Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983970 | KAG2323189.1 | 61.702 | 141 | 38 | 3 | 62 | 186 | 84 | 224 | 4.23e-44 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983970 | sp|Q9GFM6|RR7_CALFL | 56.604 | 106 | 37 | 2 | 90 | 186 | 8 | 113 | 4.52e-32 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983970 | A0A444Y4V9 | 56.688 | 157 | 36 | 3 | 62 | 186 | 70 | 226 | 3.08e-43 | 154 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0762280 | Msa0983970 | 0.809372 | 1.955285e-50 | -8.615850e-47 |
| Msa0366560 | Msa0983970 | 0.834181 | 3.477437e-56 | -8.615850e-47 |
| Msa0459360 | Msa0983970 | 0.811917 | 5.508825e-51 | -8.615850e-47 |
| Msa0506110 | Msa0983970 | 0.858100 | 1.038301e-62 | -8.615850e-47 |
| Msa0590170 | Msa0983970 | 0.810350 | 1.204336e-50 | -8.615850e-47 |
| Msa0893330 | Msa0983970 | 0.987601 | 7.532767e-171 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983970 | MtrunA17_CPg0492421 | 53.704 | 108 | 39 | 2 | 90 | 186 | 8 | 115 | 2.58e-28 | 103 |
| Msa0983970 | MtrunA17_Chr4g0016101 | 53.704 | 108 | 39 | 2 | 90 | 186 | 8 | 115 | 2.58e-28 | 103 |
| Msa0983970 | MtrunA17_Chr3g0090841 | 53.704 | 108 | 39 | 2 | 90 | 186 | 8 | 115 | 2.58e-28 | 103 |
| Msa0983970 | MtrunA17_CPg0492401 | 97.222 | 36 | 1 | 0 | 1 | 36 | 1 | 36 | 2.23e-18 | 74.7 |
| Msa0983970 | MtrunA17_Chr7g0234981 | 81.250 | 32 | 6 | 0 | 62 | 93 | 54 | 85 | 7.90e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983970 | ATCG00900.1 | 55.660 | 106 | 38 | 2 | 90 | 186 | 8 | 113 | 9.92e-31 | 110 |
| Msa0983970 | ATCG01240.1 | 55.660 | 106 | 38 | 2 | 90 | 186 | 8 | 113 | 9.92e-31 | 110 |
| Msa0983970 | ATCG00905.1 | 90.625 | 32 | 3 | 0 | 62 | 93 | 46 | 77 | 2.89e-13 | 62.8 |
| Msa0983970 | ATCG01230.1 | 90.625 | 32 | 3 | 0 | 62 | 93 | 46 | 77 | 2.89e-13 | 62.8 |
Find 40 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCCATTCATTGGTTATT+AGG | 0.196458 | 6_4:-27503546 | Msa0983970:CDS |
| ACTAATCGATTACGATAAAT+TGG | 0.238141 | 6_4:+27503787 | None:intergenic |
| AGCGAGGATCTTTCACAAAA+AGG | 0.268396 | 6_4:-27504531 | Msa0983970:CDS |
| TTAATATACAACATAGGTTT+TGG | 0.282037 | 6_4:+27504936 | None:intergenic |
| CATCAAGTTCCCGTTGAAAT+AGG | 0.307921 | 6_4:-27503588 | Msa0983970:CDS |
| AGATCCTCGCTTTCGTGCTT+TGG | 0.320306 | 6_4:+27504543 | None:intergenic |
| CTTGGCCCACAGCGACAAAA+TGG | 0.333426 | 6_4:-27504861 | Msa0983970:CDS |
| GAAAAGAACTTGCCATTCAT+TGG | 0.351357 | 6_4:-27503554 | Msa0983970:CDS |
| CCTTTACTCCGACAACATCT+AGG | 0.354094 | 6_4:+27503951 | None:intergenic |
| GCTCTTGCTGCCTTTCTCCT+TGG | 0.365194 | 6_4:-27504879 | Msa0983970:CDS |
| AACCTATGTTGTATATTAAG+AGG | 0.368497 | 6_4:-27504932 | Msa0983970:exon |
| AAAAGGATTCCTATTCTAAA+GGG | 0.399720 | 6_4:-27504514 | Msa0983970:intron |
| CATATTTAGAACGACCTTGT+TGG | 0.411865 | 6_4:+27503924 | None:intergenic |
| TCCTCGCTTTCGTGCTTTGG+TGG | 0.419337 | 6_4:+27504546 | None:intergenic |
| GCTTGACATAAAACAGATAG+TGG | 0.428818 | 6_4:+27503660 | None:intergenic |
| AGGCGCATCCCGAAAACGTC+CGG | 0.430208 | 6_4:-27503526 | Msa0983970:CDS |
| GGTTATGCACCCTTTAGAAT+AGG | 0.446599 | 6_4:+27504505 | None:intergenic |
| TCGCTGTGGGCCAAGGAGAA+AGG | 0.470568 | 6_4:+27504869 | None:intergenic |
| TGTGTGGATCCTATTTCAAC+GGG | 0.470768 | 6_4:+27503579 | None:intergenic |
| CCTCGCTTTCGTGCTTTGGT+GGG | 0.472377 | 6_4:+27504547 | None:intergenic |
| CCTAGATGTTGTCGGAGTAA+AGG | 0.507642 | 6_4:-27503951 | Msa0983970:CDS |
| TTATCTATCGAGCTATGAAA+AGG | 0.512086 | 6_4:-27503707 | Msa0983970:CDS |
| TAATCGATTAGTTAACATGT+TGG | 0.538486 | 6_4:-27503776 | Msa0983970:CDS |
| CTTTACTCCGACAACATCTA+GGG | 0.546562 | 6_4:+27503952 | None:intergenic |
| TTGTGTGGATCCTATTTCAA+CGG | 0.548545 | 6_4:+27503578 | None:intergenic |
| TGCGCCTAATAACCAATGAA+TGG | 0.550997 | 6_4:+27503542 | None:intergenic |
| CGAGGAACCCTAGATGTTGT+CGG | 0.555041 | 6_4:-27503959 | Msa0983970:CDS |
| GGCGCATCCCGAAAACGTCC+GGG | 0.561163 | 6_4:-27503525 | Msa0983970:CDS |
| GTGAGATATCACATTGTTCG+AGG | 0.586809 | 6_4:-27503977 | Msa0983970:CDS |
| ACAGCGACAAAATGGAAGAC+TGG | 0.588097 | 6_4:-27504853 | Msa0983970:CDS |
| AACCTCTTAATATACAACAT+AGG | 0.594876 | 6_4:+27504930 | None:intergenic |
| GGAGTAAAGGATCGCCAACA+AGG | 0.599055 | 6_4:-27503938 | Msa0983970:intron |
| CCCACCAAAGCACGAAAGCG+AGG | 0.615376 | 6_4:-27504547 | Msa0983970:CDS |
| ATTGTACCATCCTAAAAGCA+AGG | 0.638231 | 6_4:+27504902 | None:intergenic |
| GGAAGGGTTAAGGATTTACC+TGG | 0.642987 | 6_4:-27504001 | Msa0983970:CDS |
| GTTAACCGTATTATGAAACA+CGG | 0.650772 | 6_4:-27503754 | Msa0983970:CDS |
| ACAATGTGATATCTCACACC+AGG | 0.678462 | 6_4:+27503983 | None:intergenic |
| TTTATGTCAAGCAATATGTG+GGG | 0.713803 | 6_4:-27503649 | Msa0983970:intron |
| GTTGAAATAGGATCCACACA+AGG | 0.731975 | 6_4:-27503576 | Msa0983970:CDS |
| GTACCATCCTAAAAGCAAGG+AGG | 0.785957 | 6_4:+27504905 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAGAATAGAAAATATTAA+TGG | - | chr6_4:27503781-27503800 | Msa0983970:CDS | 15.0% |
| !!! | CATATTTTTCTTGTAAATTA+TGG | + | chr6_4:27504442-27504461 | None:intergenic | 15.0% |
| !!! | CATTTTTTTATAACTTATAG+GGG | + | chr6_4:27504612-27504631 | None:intergenic | 15.0% |
| !!! | CCATTTTTTTATAACTTATA+GGG | + | chr6_4:27504613-27504632 | None:intergenic | 15.0% |
| !!! | TCCATTTTTTTATAACTTAT+AGG | + | chr6_4:27504614-27504633 | None:intergenic | 15.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | chr6_4:27503781-27503800 | Msa0983970:CDS | 15.0% |
| !!! | CATATTTTTCTTGTAAATTA+TGG | + | chr6_4:27504442-27504461 | None:intergenic | 15.0% |
| !!! | CATTTTTTTATAACTTATAG+GGG | + | chr6_4:27504612-27504631 | None:intergenic | 15.0% |
| !!! | CCATTTTTTTATAACTTATA+GGG | + | chr6_4:27504613-27504632 | None:intergenic | 15.0% |
| !!! | TCCATTTTTTTATAACTTAT+AGG | + | chr6_4:27504614-27504633 | None:intergenic | 15.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | chr6_4:27503547-27503566 | None:intergenic | 20.0% |
| !!! | AAAGATTATTCTTTTTCTTC+TGG | + | chr6_4:27504107-27504126 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | chr6_4:27504143-27504162 | Msa0983970:intron | 20.0% |
| !!! | AATTAGTTCTCGTTATTTTT+CGG | - | chr6_4:27504188-27504207 | Msa0983970:intron | 20.0% |
| !!! | TTCAATTCTTTTGAAGTAAT+TGG | + | chr6_4:27504243-27504262 | None:intergenic | 20.0% |
| !! | CCCTATAAGTTATAAAAAAA+TGG | - | chr6_4:27504610-27504629 | Msa0983970:intron | 20.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | chr6_4:27503547-27503566 | None:intergenic | 20.0% |
| !!! | AAAGATTATTCTTTTTCTTC+TGG | + | chr6_4:27504107-27504126 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | chr6_4:27504143-27504162 | Msa0983970:intron | 20.0% |
| !!! | AATTAGTTCTCGTTATTTTT+CGG | - | chr6_4:27504188-27504207 | Msa0983970:intron | 20.0% |
| !!! | TTCAATTCTTTTGAAGTAAT+TGG | + | chr6_4:27504243-27504262 | None:intergenic | 20.0% |
| !! | CCCTATAAGTTATAAAAAAA+TGG | - | chr6_4:27504610-27504629 | Msa0983970:intron | 20.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | chr6_4:27503548-27503567 | Msa0983970:CDS | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | chr6_4:27503553-27503572 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | chr6_4:27503690-27503709 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | chr6_4:27503889-27503908 | Msa0983970:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | chr6_4:27503965-27503984 | Msa0983970:CDS | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | chr6_4:27503966-27503985 | Msa0983970:CDS | 25.0% |
| !!! | TCAAATTGGGGATTTTATTT+AGG | - | chr6_4:27504034-27504053 | Msa0983970:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | chr6_4:27504044-27504063 | Msa0983970:intron | 25.0% |
| !!! | ATTAGTTCTCGTTATTTTTC+GGG | - | chr6_4:27504189-27504208 | Msa0983970:intron | 25.0% |
| !! | AAATATGTAGTCTTAGTAAG+AGG | - | chr6_4:27504455-27504474 | Msa0983970:intron | 25.0% |
| !! | AATATGTAGTCTTAGTAAGA+GGG | - | chr6_4:27504456-27504475 | Msa0983970:intron | 25.0% |
| !! | GGGGCTAAAATAATTTATTT+TGG | + | chr6_4:27504593-27504612 | None:intergenic | 25.0% |
| !! | ATAAATTGGATCAGATTTTG+CGG | + | chr6_4:27504682-27504701 | None:intergenic | 25.0% |
| ! | ACTAATCGATTACGATAAAT+TGG | + | chr6_4:27504696-27504715 | None:intergenic | 25.0% |
| !! | TAATCGATTAGTTAACATGT+TGG | - | chr6_4:27504704-27504723 | Msa0983970:intron | 25.0% |
| !! | TTTTTCCGTGTTTCATAATA+CGG | + | chr6_4:27504734-27504753 | None:intergenic | 25.0% |
| ! | AAACACGGAAAAAAAATCAT+TGG | - | chr6_4:27504741-27504760 | Msa0983970:intron | 25.0% |
| !! | TTTTATGTCAAGCAATATGT+GGG | - | chr6_4:27504830-27504849 | Msa0983970:intron | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | chr6_4:27503548-27503567 | Msa0983970:CDS | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | chr6_4:27503553-27503572 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | chr6_4:27503690-27503709 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | chr6_4:27503889-27503908 | Msa0983970:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | chr6_4:27503965-27503984 | Msa0983970:CDS | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | chr6_4:27503966-27503985 | Msa0983970:CDS | 25.0% |
| !!! | TCAAATTGGGGATTTTATTT+AGG | - | chr6_4:27504034-27504053 | Msa0983970:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | chr6_4:27504044-27504063 | Msa0983970:intron | 25.0% |
| !!! | ATTAGTTCTCGTTATTTTTC+GGG | - | chr6_4:27504189-27504208 | Msa0983970:intron | 25.0% |
| !! | AAATATGTAGTCTTAGTAAG+AGG | - | chr6_4:27504455-27504474 | Msa0983970:intron | 25.0% |
| !! | AATATGTAGTCTTAGTAAGA+GGG | - | chr6_4:27504456-27504475 | Msa0983970:intron | 25.0% |
| !! | GGGGCTAAAATAATTTATTT+TGG | + | chr6_4:27504593-27504612 | None:intergenic | 25.0% |
| !! | ATAAATTGGATCAGATTTTG+CGG | + | chr6_4:27504682-27504701 | None:intergenic | 25.0% |
| ! | ACTAATCGATTACGATAAAT+TGG | + | chr6_4:27504696-27504715 | None:intergenic | 25.0% |
| !! | TAATCGATTAGTTAACATGT+TGG | - | chr6_4:27504704-27504723 | Msa0983970:intron | 25.0% |
| !! | TTTTTCCGTGTTTCATAATA+CGG | + | chr6_4:27504734-27504753 | None:intergenic | 25.0% |
| ! | AAACACGGAAAAAAAATCAT+TGG | - | chr6_4:27504741-27504760 | Msa0983970:intron | 25.0% |
| !! | TTTTATGTCAAGCAATATGT+GGG | - | chr6_4:27504830-27504849 | Msa0983970:intron | 25.0% |
| CAATTTGATCTAATGTTGAC+GGG | + | chr6_4:27504022-27504041 | None:intergenic | 30.0% | |
| CCAATTTGATCTAATGTTGA+CGG | + | chr6_4:27504023-27504042 | None:intergenic | 30.0% | |
| CGTCAACATTAGATCAAATT+GGG | - | chr6_4:27504021-27504040 | Msa0983970:intron | 30.0% | |
| GTCAACATTAGATCAAATTG+GGG | - | chr6_4:27504022-27504041 | Msa0983970:intron | 30.0% | |
| !! | AATTGGGGATTTTATTTAGG+AGG | - | chr6_4:27504037-27504056 | Msa0983970:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | chr6_4:27504043-27504062 | Msa0983970:intron | 30.0% |
| TACTTCAAAAGAATTGAACG+AGG | - | chr6_4:27504245-27504264 | Msa0983970:intron | 30.0% | |
| TGTAAATTATGGCAAATGTC+AGG | + | chr6_4:27504431-27504450 | None:intergenic | 30.0% | |
| ! | ATATGTAGTCTTAGTAAGAG+GGG | - | chr6_4:27504457-27504476 | Msa0983970:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | chr6_4:27504558-27504577 | Msa0983970:CDS | 30.0% |
| GTTAACCGTATTATGAAACA+CGG | - | chr6_4:27504726-27504745 | Msa0983970:intron | 30.0% | |
| TTATCTATCGAGCTATGAAA+AGG | - | chr6_4:27504773-27504792 | Msa0983970:intron | 30.0% | |
| ! | GTTTTATGTCAAGCAATATG+TGG | - | chr6_4:27504829-27504848 | Msa0983970:intron | 30.0% |
| TTTATGTCAAGCAATATGTG+GGG | - | chr6_4:27504831-27504850 | Msa0983970:intron | 30.0% | |
| CAATTTGATCTAATGTTGAC+GGG | + | chr6_4:27504022-27504041 | None:intergenic | 30.0% | |
| CCAATTTGATCTAATGTTGA+CGG | + | chr6_4:27504023-27504042 | None:intergenic | 30.0% | |
| CGTCAACATTAGATCAAATT+GGG | - | chr6_4:27504021-27504040 | Msa0983970:intron | 30.0% | |
| GTCAACATTAGATCAAATTG+GGG | - | chr6_4:27504022-27504041 | Msa0983970:intron | 30.0% | |
| !! | AATTGGGGATTTTATTTAGG+AGG | - | chr6_4:27504037-27504056 | Msa0983970:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | chr6_4:27504043-27504062 | Msa0983970:intron | 30.0% |
| TACTTCAAAAGAATTGAACG+AGG | - | chr6_4:27504245-27504264 | Msa0983970:intron | 30.0% | |
| TGTAAATTATGGCAAATGTC+AGG | + | chr6_4:27504431-27504450 | None:intergenic | 30.0% | |
| ! | ATATGTAGTCTTAGTAAGAG+GGG | - | chr6_4:27504457-27504476 | Msa0983970:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | chr6_4:27504558-27504577 | Msa0983970:CDS | 30.0% |
| GTTAACCGTATTATGAAACA+CGG | - | chr6_4:27504726-27504745 | Msa0983970:intron | 30.0% | |
| TTATCTATCGAGCTATGAAA+AGG | - | chr6_4:27504773-27504792 | Msa0983970:intron | 30.0% | |
| ! | GTTTTATGTCAAGCAATATG+TGG | - | chr6_4:27504829-27504848 | Msa0983970:intron | 30.0% |
| TTTATGTCAAGCAATATGTG+GGG | - | chr6_4:27504831-27504850 | Msa0983970:intron | 30.0% | |
| ATTGTACCATCCTAAAAGCA+AGG | + | chr6_4:27503581-27503600 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | chr6_4:27503820-27503839 | Msa0983970:intron | 35.0% |
| CCGTCAACATTAGATCAAAT+TGG | - | chr6_4:27504020-27504039 | Msa0983970:intron | 35.0% | |
| !! | AGGAGGTATTGGGAATAAAT+TGG | - | chr6_4:27504054-27504073 | Msa0983970:intron | 35.0% |
| ! | CATGAGATTTTCACCTCATA+CGG | + | chr6_4:27504273-27504292 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | chr6_4:27504275-27504294 | Msa0983970:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | chr6_4:27504343-27504362 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | chr6_4:27504353-27504372 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | chr6_4:27504354-27504373 | None:intergenic | 35.0% |
| AAGCAGTGATTTCAAATCCA+GGG | + | chr6_4:27504403-27504422 | None:intergenic | 35.0% | |
| TAAGCAGTGATTTCAAATCC+AGG | + | chr6_4:27504404-27504423 | None:intergenic | 35.0% | |
| ! | TATGTAGTCTTAGTAAGAGG+GGG | - | chr6_4:27504458-27504477 | Msa0983970:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | chr6_4:27504559-27504578 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | chr6_4:27504557-27504576 | Msa0983970:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | chr6_4:27504559-27504578 | Msa0983970:CDS | 35.0% |
| GCTTGACATAAAACAGATAG+TGG | + | chr6_4:27504823-27504842 | None:intergenic | 35.0% | |
| TTGTGTGGATCCTATTTCAA+CGG | + | chr6_4:27504905-27504924 | None:intergenic | 35.0% | |
| GAAAAGAACTTGCCATTCAT+TGG | - | chr6_4:27504926-27504945 | Msa0983970:CDS | 35.0% | |
| ! | CTTGCCATTCATTGGTTATT+AGG | - | chr6_4:27504934-27504953 | Msa0983970:exon | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | chr6_4:27503581-27503600 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | chr6_4:27503820-27503839 | Msa0983970:intron | 35.0% |
| CCGTCAACATTAGATCAAAT+TGG | - | chr6_4:27504020-27504039 | Msa0983970:intron | 35.0% | |
| !! | AGGAGGTATTGGGAATAAAT+TGG | - | chr6_4:27504054-27504073 | Msa0983970:intron | 35.0% |
| ! | CATGAGATTTTCACCTCATA+CGG | + | chr6_4:27504273-27504292 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | chr6_4:27504275-27504294 | Msa0983970:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | chr6_4:27504343-27504362 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | chr6_4:27504353-27504372 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | chr6_4:27504354-27504373 | None:intergenic | 35.0% |
| AAGCAGTGATTTCAAATCCA+GGG | + | chr6_4:27504403-27504422 | None:intergenic | 35.0% | |
| TAAGCAGTGATTTCAAATCC+AGG | + | chr6_4:27504404-27504423 | None:intergenic | 35.0% | |
| ! | TATGTAGTCTTAGTAAGAGG+GGG | - | chr6_4:27504458-27504477 | Msa0983970:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | chr6_4:27504559-27504578 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | chr6_4:27504557-27504576 | Msa0983970:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | chr6_4:27504559-27504578 | Msa0983970:CDS | 35.0% |
| GCTTGACATAAAACAGATAG+TGG | + | chr6_4:27504823-27504842 | None:intergenic | 35.0% | |
| TTGTGTGGATCCTATTTCAA+CGG | + | chr6_4:27504905-27504924 | None:intergenic | 35.0% | |
| GAAAAGAACTTGCCATTCAT+TGG | - | chr6_4:27504926-27504945 | Msa0983970:CDS | 35.0% | |
| ! | CTTGCCATTCATTGGTTATT+AGG | - | chr6_4:27504934-27504953 | Msa0983970:exon | 35.0% |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | chr6_4:27503530-27503549 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | chr6_4:27503534-27503553 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | chr6_4:27503655-27503674 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | chr6_4:27503654-27503673 | Msa0983970:CDS | 40.0% | |
| TGTAAAGCGTGTGATAGCAA+CGG | + | chr6_4:27503848-27503867 | None:intergenic | 40.0% | |
| AGCGAGGATCTTTCACAAAA+AGG | - | chr6_4:27503949-27503968 | Msa0983970:CDS | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | chr6_4:27503978-27503997 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | chr6_4:27503999-27504018 | None:intergenic | 40.0% | |
| !!! | GTTCTCGTTATTTTTCGGGA+AGG | - | chr6_4:27504193-27504212 | Msa0983970:intron | 40.0% |
| !! | TCATGTACGGTTTTGTAGAG+TGG | - | chr6_4:27504288-27504307 | Msa0983970:intron | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | chr6_4:27504352-27504371 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | chr6_4:27504363-27504382 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | chr6_4:27504373-27504392 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+GGG | + | chr6_4:27504402-27504421 | None:intergenic | 40.0% | |
| ACAATGTGATATCTCACACC+AGG | + | chr6_4:27504500-27504519 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | chr6_4:27504503-27504522 | Msa0983970:intron | 40.0% | |
| CTTTACTCCGACAACATCTA+GGG | + | chr6_4:27504531-27504550 | None:intergenic | 40.0% | |
| CATCAAGTTCCCGTTGAAAT+AGG | - | chr6_4:27504892-27504911 | Msa0983970:CDS | 40.0% | |
| TGTGTGGATCCTATTTCAAC+GGG | + | chr6_4:27504904-27504923 | None:intergenic | 40.0% | |
| GTTGAAATAGGATCCACACA+AGG | - | chr6_4:27504904-27504923 | Msa0983970:CDS | 40.0% | |
| TGCGCCTAATAACCAATGAA+TGG | + | chr6_4:27504941-27504960 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | chr6_4:27503530-27503549 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | chr6_4:27503534-27503553 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | chr6_4:27503655-27503674 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | chr6_4:27503654-27503673 | Msa0983970:CDS | 40.0% | |
| TGTAAAGCGTGTGATAGCAA+CGG | + | chr6_4:27503848-27503867 | None:intergenic | 40.0% | |
| AGCGAGGATCTTTCACAAAA+AGG | - | chr6_4:27503949-27503968 | Msa0983970:CDS | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | chr6_4:27503978-27503997 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | chr6_4:27503999-27504018 | None:intergenic | 40.0% | |
| !!! | GTTCTCGTTATTTTTCGGGA+AGG | - | chr6_4:27504193-27504212 | Msa0983970:intron | 40.0% |
| !! | TCATGTACGGTTTTGTAGAG+TGG | - | chr6_4:27504288-27504307 | Msa0983970:intron | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | chr6_4:27504352-27504371 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | chr6_4:27504363-27504382 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | chr6_4:27504373-27504392 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+GGG | + | chr6_4:27504402-27504421 | None:intergenic | 40.0% | |
| ACAATGTGATATCTCACACC+AGG | + | chr6_4:27504500-27504519 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | chr6_4:27504503-27504522 | Msa0983970:intron | 40.0% | |
| CTTTACTCCGACAACATCTA+GGG | + | chr6_4:27504531-27504550 | None:intergenic | 40.0% | |
| CATCAAGTTCCCGTTGAAAT+AGG | - | chr6_4:27504892-27504911 | Msa0983970:CDS | 40.0% | |
| TGTGTGGATCCTATTTCAAC+GGG | + | chr6_4:27504904-27504923 | None:intergenic | 40.0% | |
| GTTGAAATAGGATCCACACA+AGG | - | chr6_4:27504904-27504923 | Msa0983970:CDS | 40.0% | |
| TGCGCCTAATAACCAATGAA+TGG | + | chr6_4:27504941-27504960 | None:intergenic | 40.0% | |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | chr6_4:27503568-27503587 | Msa0983970:CDS | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | chr6_4:27503572-27503591 | Msa0983970:CDS | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | chr6_4:27503578-27503597 | None:intergenic | 45.0% | |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | chr6_4:27503627-27503646 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | chr6_4:27503628-27503647 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | chr6_4:27503627-27503646 | Msa0983970:intron | 45.0% | |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | chr6_4:27504198-27504217 | Msa0983970:intron | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | chr6_4:27504215-27504234 | Msa0983970:intron | 45.0% | |
| ATTGAACGAGGATCCGTATG+AGG | - | chr6_4:27504257-27504276 | Msa0983970:intron | 45.0% | |
| !! | GGTTTTGTAGAGTGGCAGTA+AGG | - | chr6_4:27504296-27504315 | Msa0983970:intron | 45.0% |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | chr6_4:27504462-27504481 | Msa0983970:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | chr6_4:27504463-27504482 | Msa0983970:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | chr6_4:27504479-27504498 | Msa0983970:intron | 45.0% | |
| CCTTTACTCCGACAACATCT+AGG | + | chr6_4:27504532-27504551 | None:intergenic | 45.0% | |
| CCTAGATGTTGTCGGAGTAA+AGG | - | chr6_4:27504529-27504548 | Msa0983970:CDS | 45.0% | |
| ! | TCCCTTTTACGCTCATGTCA+CGG | - | chr6_4:27504637-27504656 | Msa0983970:intron | 45.0% |
| ! | GGCAAGTTCTTTTCCTTGTG+TGG | + | chr6_4:27504920-27504939 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | chr6_4:27503568-27503587 | Msa0983970:CDS | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | chr6_4:27503572-27503591 | Msa0983970:CDS | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | chr6_4:27503578-27503597 | None:intergenic | 45.0% | |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | chr6_4:27503627-27503646 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | chr6_4:27503628-27503647 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | chr6_4:27503627-27503646 | Msa0983970:intron | 45.0% | |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | chr6_4:27504198-27504217 | Msa0983970:intron | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | chr6_4:27504215-27504234 | Msa0983970:intron | 45.0% | |
| ATTGAACGAGGATCCGTATG+AGG | - | chr6_4:27504257-27504276 | Msa0983970:intron | 45.0% | |
| !! | GGTTTTGTAGAGTGGCAGTA+AGG | - | chr6_4:27504296-27504315 | Msa0983970:intron | 45.0% |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | chr6_4:27504462-27504481 | Msa0983970:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | chr6_4:27504463-27504482 | Msa0983970:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | chr6_4:27504479-27504498 | Msa0983970:intron | 45.0% | |
| CCTTTACTCCGACAACATCT+AGG | + | chr6_4:27504532-27504551 | None:intergenic | 45.0% | |
| CCTAGATGTTGTCGGAGTAA+AGG | - | chr6_4:27504529-27504548 | Msa0983970:CDS | 45.0% | |
| ! | TCCCTTTTACGCTCATGTCA+CGG | - | chr6_4:27504637-27504656 | Msa0983970:intron | 45.0% |
| ! | GGCAAGTTCTTTTCCTTGTG+TGG | + | chr6_4:27504920-27504939 | None:intergenic | 45.0% |
| AGATCCTCGCTTTCGTGCTT+TGG | + | chr6_4:27503940-27503959 | None:intergenic | 50.0% | |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | chr6_4:27503981-27504000 | Msa0983970:CDS | 50.0% |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | chr6_4:27504469-27504488 | Msa0983970:intron | 50.0% | |
| CGAGGAACCCTAGATGTTGT+CGG | - | chr6_4:27504521-27504540 | Msa0983970:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | chr6_4:27504542-27504561 | Msa0983970:CDS | 50.0% | |
| GCCGTGACATGAGCGTAAAA+GGG | + | chr6_4:27504641-27504660 | None:intergenic | 50.0% | |
| AGATCCTCGCTTTCGTGCTT+TGG | + | chr6_4:27503940-27503959 | None:intergenic | 50.0% | |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | chr6_4:27503981-27504000 | Msa0983970:CDS | 50.0% |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | chr6_4:27504469-27504488 | Msa0983970:intron | 50.0% | |
| CGAGGAACCCTAGATGTTGT+CGG | - | chr6_4:27504521-27504540 | Msa0983970:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | chr6_4:27504542-27504561 | Msa0983970:CDS | 50.0% | |
| GCCGTGACATGAGCGTAAAA+GGG | + | chr6_4:27504641-27504660 | None:intergenic | 50.0% | |
| GCTCTTGCTGCCTTTCTCCT+TGG | - | chr6_4:27503601-27503620 | Msa0983970:CDS | 55.0% | |
| ! | CATTTTGTCGCTGTGGGCCA+AGG | + | chr6_4:27503621-27503640 | None:intergenic | 55.0% |
| CTTGGCCCACAGCGACAAAA+TGG | - | chr6_4:27503619-27503638 | Msa0983970:intron | 55.0% | |
| CCTCGCTTTCGTGCTTTGGT+GGG | + | chr6_4:27503936-27503955 | None:intergenic | 55.0% | |
| TCCTCGCTTTCGTGCTTTGG+TGG | + | chr6_4:27503937-27503956 | None:intergenic | 55.0% | |
| ATCCAGGGGTAAGCGTACTC+TGG | + | chr6_4:27504388-27504407 | None:intergenic | 55.0% | |
| CGCCGTGACATGAGCGTAAA+AGG | + | chr6_4:27504642-27504661 | None:intergenic | 55.0% | |
| TTTACGCTCATGTCACGGCG+AGG | - | chr6_4:27504642-27504661 | Msa0983970:intron | 55.0% | |
| GCTCTTGCTGCCTTTCTCCT+TGG | - | chr6_4:27503601-27503620 | Msa0983970:CDS | 55.0% | |
| ! | CATTTTGTCGCTGTGGGCCA+AGG | + | chr6_4:27503621-27503640 | None:intergenic | 55.0% |
| CTTGGCCCACAGCGACAAAA+TGG | - | chr6_4:27503619-27503638 | Msa0983970:intron | 55.0% | |
| CCTCGCTTTCGTGCTTTGGT+GGG | + | chr6_4:27503936-27503955 | None:intergenic | 55.0% | |
| TCCTCGCTTTCGTGCTTTGG+TGG | + | chr6_4:27503937-27503956 | None:intergenic | 55.0% | |
| ATCCAGGGGTAAGCGTACTC+TGG | + | chr6_4:27504388-27504407 | None:intergenic | 55.0% | |
| CGCCGTGACATGAGCGTAAA+AGG | + | chr6_4:27504642-27504661 | None:intergenic | 55.0% | |
| TTTACGCTCATGTCACGGCG+AGG | - | chr6_4:27504642-27504661 | Msa0983970:intron | 55.0% | |
| TCGCTGTGGGCCAAGGAGAA+AGG | + | chr6_4:27503614-27503633 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+AGG | - | chr6_4:27503933-27503952 | Msa0983970:intron | 60.0% | |
| TGCCAGAGTACGCTTACCCC+TGG | - | chr6_4:27504383-27504402 | Msa0983970:intron | 60.0% | |
| AGGCGCATCCCGAAAACGTC+CGG | - | chr6_4:27504954-27504973 | Msa0983970:five_prime_UTR | 60.0% | |
| TCGCTGTGGGCCAAGGAGAA+AGG | + | chr6_4:27503614-27503633 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+AGG | - | chr6_4:27503933-27503952 | Msa0983970:intron | 60.0% | |
| TGCCAGAGTACGCTTACCCC+TGG | - | chr6_4:27504383-27504402 | Msa0983970:intron | 60.0% | |
| AGGCGCATCCCGAAAACGTC+CGG | - | chr6_4:27504954-27504973 | Msa0983970:five_prime_UTR | 60.0% | |
| GGCGCATCCCGAAAACGTCC+GGG | - | chr6_4:27504955-27504974 | Msa0983970:five_prime_UTR | 65.0% | |
| GGCGCATCCCGAAAACGTCC+GGG | - | chr6_4:27504955-27504974 | Msa0983970:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 27503524 | 27504978 | 27503524 | ID=Msa0983970;Name=Msa0983970 |
| chr6_4 | mRNA | 27503524 | 27504978 | 27503524 | ID=Msa0983970-mRNA-1;Parent=Msa0983970;Name=Msa0983970-mRNA-1;_AED=0.34;_eAED=0.57;_QI=29|0|0|1|0|0|5|0|186 |
| chr6_4 | exon | 27504845 | 27504978 | 27504845 | ID=Msa0983970-mRNA-1:exon:7797;Parent=Msa0983970-mRNA-1 |
| chr6_4 | exon | 27504515 | 27504591 | 27504515 | ID=Msa0983970-mRNA-1:exon:7796;Parent=Msa0983970-mRNA-1 |
| chr6_4 | exon | 27503939 | 27504027 | 27503939 | ID=Msa0983970-mRNA-1:exon:7795;Parent=Msa0983970-mRNA-1 |
| chr6_4 | exon | 27503650 | 27503829 | 27503650 | ID=Msa0983970-mRNA-1:exon:7794;Parent=Msa0983970-mRNA-1 |
| chr6_4 | exon | 27503524 | 27503630 | 27503524 | ID=Msa0983970-mRNA-1:exon:7793;Parent=Msa0983970-mRNA-1 |
| chr6_4 | five_prime_UTR | 27504950 | 27504978 | 27504950 | ID=Msa0983970-mRNA-1:five_prime_utr;Parent=Msa0983970-mRNA-1 |
| chr6_4 | CDS | 27504845 | 27504949 | 27504845 | ID=Msa0983970-mRNA-1:cds;Parent=Msa0983970-mRNA-1 |
| chr6_4 | CDS | 27504515 | 27504591 | 27504515 | ID=Msa0983970-mRNA-1:cds;Parent=Msa0983970-mRNA-1 |
| chr6_4 | CDS | 27503939 | 27504027 | 27503939 | ID=Msa0983970-mRNA-1:cds;Parent=Msa0983970-mRNA-1 |
| chr6_4 | CDS | 27503650 | 27503829 | 27503650 | ID=Msa0983970-mRNA-1:cds;Parent=Msa0983970-mRNA-1 |
| chr6_4 | CDS | 27503524 | 27503630 | 27503524 | ID=Msa0983970-mRNA-1:cds;Parent=Msa0983970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
