Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988700 | XP_039690317.1 | 44.749 | 219 | 109 | 1 | 331 | 537 | 559 | 777 | 1.70e-45 | 185 |
| Msa0988700 | XP_039690317.1 | 46.833 | 521 | 231 | 10 | 1 | 478 | 1 | 518 | 1.48e-134 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988700 | G7I2F3 | 85.520 | 221 | 30 | 1 | 320 | 540 | 29 | 247 | 8.31e-118 | 362 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0103020 | Msa0988700 | 0.820271 | 7.492011e-53 | -8.615850e-47 |
| Msa0674790 | Msa0988700 | 0.862103 | 6.421891e-64 | -8.615850e-47 |
| Msa0988700 | Msa1021760 | 0.868988 | 4.336044e-66 | -8.615850e-47 |
| Msa0284840 | Msa0988700 | 0.804431 | 2.167117e-49 | -8.615850e-47 |
| Msa0855300 | Msa0988700 | 0.843601 | 1.267797e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988700 | MtrunA17_Chr2g0318091 | 90.083 | 121 | 12 | 0 | 555 | 675 | 1 | 121 | 1.82e-75 | 238 |
| Msa0988700 | MtrunA17_Chr5g0420271 | 35.246 | 488 | 196 | 12 | 1 | 449 | 1 | 407 | 9.79e-74 | 244 |
| Msa0988700 | MtrunA17_Chr6g0466851 | 31.788 | 604 | 313 | 17 | 3 | 540 | 24 | 594 | 2.04e-71 | 247 |
| Msa0988700 | MtrunA17_Chr6g0466851 | 44.275 | 131 | 71 | 1 | 537 | 665 | 654 | 784 | 4.46e-30 | 126 |
| Msa0988700 | MtrunA17_Chr7g0239401 | 94.949 | 99 | 5 | 0 | 577 | 675 | 1 | 99 | 1.01e-63 | 206 |
| Msa0988700 | MtrunA17_Chr5g0413121 | 76.562 | 128 | 10 | 1 | 541 | 668 | 2 | 109 | 1.54e-61 | 201 |
| Msa0988700 | MtrunA17_Chr2g0307151 | 31.957 | 460 | 205 | 8 | 89 | 544 | 6 | 361 | 2.09e-60 | 206 |
| Msa0988700 | MtrunA17_Chr8g0365151 | 83.495 | 103 | 10 | 1 | 580 | 675 | 1 | 103 | 1.40e-56 | 187 |
| Msa0988700 | MtrunA17_Chr3g0091111 | 88.421 | 95 | 11 | 0 | 580 | 674 | 1 | 95 | 1.40e-52 | 176 |
| Msa0988700 | MtrunA17_Chr4g0067771 | 73.554 | 121 | 12 | 1 | 555 | 675 | 1 | 101 | 2.44e-52 | 176 |
| Msa0988700 | MtrunA17_Chr5g0419661 | 84.211 | 95 | 15 | 0 | 580 | 674 | 1 | 95 | 6.73e-49 | 166 |
| Msa0988700 | MtrunA17_Chr6g0476801 | 85.393 | 89 | 13 | 0 | 580 | 668 | 1 | 89 | 8.29e-47 | 160 |
| Msa0988700 | MtrunA17_Chr3g0094391 | 85.393 | 89 | 13 | 0 | 580 | 668 | 41 | 129 | 1.20e-46 | 161 |
| Msa0988700 | MtrunA17_Chr7g0244771 | 90.909 | 77 | 7 | 0 | 559 | 635 | 1 | 77 | 1.47e-44 | 154 |
| Msa0988700 | MtrunA17_Chr2g0305931 | 35.821 | 268 | 134 | 8 | 182 | 442 | 1 | 237 | 2.80e-33 | 128 |
| Msa0988700 | MtrunA17_Chr2g0306021 | 44.882 | 127 | 68 | 1 | 541 | 665 | 17 | 143 | 1.00e-30 | 117 |
| Msa0988700 | MtrunA17_Chr7g0227751 | 43.511 | 131 | 72 | 1 | 537 | 665 | 286 | 416 | 3.69e-30 | 123 |
| Msa0988700 | MtrunA17_Chr7g0227751 | 28.696 | 230 | 100 | 4 | 370 | 540 | 2 | 226 | 8.94e-15 | 77.0 |
| Msa0988700 | MtrunA17_Chr2g0325841 | 23.521 | 727 | 439 | 32 | 18 | 666 | 510 | 1197 | 1.35e-26 | 116 |
| Msa0988700 | MtrunA17_Chr1g0174651 | 56.757 | 74 | 32 | 0 | 590 | 663 | 22 | 95 | 2.46e-26 | 103 |
| Msa0988700 | MtrunA17_Chr4g0010671 | 25.556 | 450 | 279 | 17 | 18 | 443 | 22 | 439 | 6.00e-24 | 106 |
| Msa0988700 | MtrunA17_Chr4g0024831 | 60.526 | 76 | 30 | 0 | 65 | 140 | 1 | 76 | 1.68e-20 | 86.7 |
| Msa0988700 | MtrunA17_Chr2g0305311 | 26.642 | 274 | 171 | 11 | 15 | 277 | 149 | 403 | 1.61e-14 | 76.6 |
| Msa0988700 | MtrunA17_Chr8g0343271 | 53.226 | 62 | 29 | 0 | 381 | 442 | 2 | 63 | 2.02e-14 | 75.1 |
| Msa0988700 | MtrunA17_Chr2g0332431 | 55.556 | 45 | 20 | 0 | 618 | 662 | 1 | 45 | 1.78e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 142 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACATTGTTCATGTAAAT+TGG | 0.140695 | 6_4:+43004296 | None:intergenic |
| TACATGAACAATGTTATATT+TGG | 0.171721 | 6_4:-43004290 | Msa0988700:CDS |
| CGTGTTAGGGGTTATGGTTT+TGG | 0.202890 | 6_4:-43005254 | Msa0988700:CDS |
| CTAACACGGCCAGAGTATTT+TGG | 0.221589 | 6_4:+43005269 | None:intergenic |
| ACGTCTCACTCCTGAATTTC+AGG | 0.228088 | 6_4:-43006877 | Msa0988700:intron |
| GCAATTGAATCTTGTTAAAT+TGG | 0.231432 | 6_4:-43004585 | Msa0988700:CDS |
| CTTCTTACAACGTCAATCTT+AGG | 0.238044 | 6_4:+43003681 | None:intergenic |
| GGAGGATTGGGCAACCTTTA+TGG | 0.248877 | 6_4:-43003136 | Msa0988700:CDS |
| TCTGGCCGTGTTAGGGGTTA+TGG | 0.265442 | 6_4:-43005260 | Msa0988700:CDS |
| TTCCAATTAGTATGGAAAAT+TGG | 0.270100 | 6_4:-43007226 | Msa0988700:CDS |
| AAGAGCTTGTGCAACATAAT+TGG | 0.275099 | 6_4:-43004229 | Msa0988700:CDS |
| CAAAATACTCTGGCCGTGTT+AGG | 0.280957 | 6_4:-43005268 | Msa0988700:CDS |
| CTTTCTTTCTTCAGGTTCAA+TGG | 0.308490 | 6_4:-43007325 | Msa0988700:intron |
| TCGGCTGGTTCCAATTAGTA+TGG | 0.318264 | 6_4:-43007234 | Msa0988700:CDS |
| AACTGATTCAGCACTACGTT+GGG | 0.333670 | 6_4:+43004415 | None:intergenic |
| TCTATCCTTTGAATCAAATC+TGG | 0.335548 | 6_4:+43004979 | None:intergenic |
| ATATTATATGGCTTCATTGC+CGG | 0.338869 | 6_4:-43003712 | Msa0988700:CDS |
| AGGTCGTCTCGAAGAAAATA+TGG | 0.371889 | 6_4:-43005738 | Msa0988700:intron |
| TATTATATGGCTTCATTGCC+GGG | 0.373096 | 6_4:-43003711 | Msa0988700:CDS |
| AAGAGGGCTGCAAGAATCTT+TGG | 0.375507 | 6_4:+43004948 | None:intergenic |
| AGCTGAGATGATATATTATA+TGG | 0.378719 | 6_4:-43003724 | Msa0988700:CDS |
| AATCCCATGGATAGAAATAA+AGG | 0.380452 | 6_4:-43003505 | Msa0988700:intron |
| TCTCCTTCTTCAACAGGTAT+AGG | 0.386213 | 6_4:+43004650 | None:intergenic |
| AAAATACTCTGGCCGTGTTA+GGG | 0.386951 | 6_4:-43005267 | Msa0988700:CDS |
| AATGGAGTTACTAGAGAGAT+TGG | 0.387630 | 6_4:-43005150 | Msa0988700:CDS |
| AGAAAATCACGGATGGGATT+AGG | 0.394627 | 6_4:-43005758 | Msa0988700:CDS |
| ATTTATGAAAGAGATAATAT+TGG | 0.395197 | 6_4:-43003343 | Msa0988700:CDS |
| AATCCTAACCTTTACATATC+CGG | 0.395875 | 6_4:+43004703 | None:intergenic |
| TAACATTGTTCATGTAAATT+GGG | 0.396503 | 6_4:+43004297 | None:intergenic |
| ATCATCCCCATGCCGACATT+TGG | 0.400493 | 6_4:-43004786 | Msa0988700:CDS |
| TCGTAATGATGTTCTTCAAT+TGG | 0.418175 | 6_4:-43005306 | Msa0988700:CDS |
| TATACCTTTATTTCTATCCA+TGG | 0.418247 | 6_4:+43003501 | None:intergenic |
| CAATATAACTAACAAAACTT+TGG | 0.420769 | 6_4:+43007270 | None:intergenic |
| TGGATGCATCGTTCGTCGGC+TGG | 0.424894 | 6_4:-43007249 | Msa0988700:CDS |
| TTGACTGTTGGTGAAGCAAT+AGG | 0.427110 | 6_4:-43004623 | Msa0988700:CDS |
| CCACATTGAACCGGAGCATT+GGG | 0.436323 | 6_4:-43006916 | Msa0988700:CDS |
| CAGTGTCCTATGCAAACTAA+TGG | 0.442316 | 6_4:-43003393 | Msa0988700:CDS |
| AGTTGAGGTCGAGGAGGATT+GGG | 0.446274 | 6_4:-43003148 | Msa0988700:CDS |
| ATAATATATCATCTCAGCTC+CGG | 0.449459 | 6_4:+43003728 | None:intergenic |
| GGATGGAGTGATTGATAAAG+AGG | 0.450299 | 6_4:-43005525 | Msa0988700:CDS |
| AAGACATCTCCTTCTTCAAC+AGG | 0.451832 | 6_4:+43004644 | None:intergenic |
| CACCCGGATATGTAAAGGTT+AGG | 0.464177 | 6_4:-43004706 | Msa0988700:CDS |
| TCAAGGAATGGTACCATAGC+AGG | 0.470566 | 6_4:+43004359 | None:intergenic |
| AACTAGCTTATCTTTAGAAT+AGG | 0.471593 | 6_4:+43003167 | None:intergenic |
| ATGGATGCAGGCTAAATCAT+TGG | 0.471982 | 6_4:-43003770 | Msa0988700:intron |
| GATGGAGATACTAGAGAGAA+TGG | 0.476912 | 6_4:-43005107 | Msa0988700:CDS |
| TACGTATCCCCACATTGAAC+CGG | 0.481483 | 6_4:-43006925 | Msa0988700:CDS |
| TTGTCTTCACATAAGTATCA+AGG | 0.481642 | 6_4:+43004342 | None:intergenic |
| TAGTTGAGGTCGAGGAGGAT+TGG | 0.481735 | 6_4:-43003149 | Msa0988700:CDS |
| CCCACATTGAACCGGAGCAT+TGG | 0.482572 | 6_4:-43006917 | Msa0988700:CDS |
| ATTGGTCGATGAACATCAAA+AGG | 0.484853 | 6_4:-43004567 | Msa0988700:intron |
| ATCCTAACCTTTACATATCC+GGG | 0.487205 | 6_4:+43004704 | None:intergenic |
| ACTAAGATACTCGACCATAA+AGG | 0.493014 | 6_4:+43003122 | None:intergenic |
| ATACCTTTATTTCTATCCAT+GGG | 0.497663 | 6_4:+43003502 | None:intergenic |
| TTGCCTATACCTGTTGAAGA+AGG | 0.500655 | 6_4:-43004653 | Msa0988700:CDS |
| TACTTATGTGAAGACAATAA+TGG | 0.501635 | 6_4:-43004336 | Msa0988700:CDS |
| ATTGCATTCACTTCATCGAC+GGG | 0.508203 | 6_4:+43005194 | None:intergenic |
| TGGCAAAATGAGTAAGAGAA+TGG | 0.512688 | 6_4:-43005168 | Msa0988700:CDS |
| GATTGCTGCCCATGTTGGTA+AGG | 0.514063 | 6_4:-43005546 | Msa0988700:CDS |
| GATGAAGTGAATGCAATGTT+TGG | 0.515924 | 6_4:-43005188 | Msa0988700:CDS |
| AGATAAGCTAGTTGAGGTCG+AGG | 0.518301 | 6_4:-43003157 | Msa0988700:CDS |
| AACAACCAGATTTGATTCAA+AGG | 0.523615 | 6_4:-43004984 | Msa0988700:CDS |
| TGCCGACATTTGGTTGCTCA+TGG | 0.524359 | 6_4:-43004776 | Msa0988700:CDS |
| GTGTTGCTTGTCATCAATCC+CGG | 0.525681 | 6_4:-43003747 | Msa0988700:CDS |
| CAGGTTCAATGGAATGCTCT+AGG | 0.525756 | 6_4:-43007314 | Msa0988700:CDS |
| GAGCAACCAAATGTCGGCAT+GGG | 0.527172 | 6_4:+43004780 | None:intergenic |
| TGACTGTTGGTGAAGCAATA+GGG | 0.528262 | 6_4:-43004622 | Msa0988700:CDS |
| AGATAAATGGCTTCAAGTAA+TGG | 0.533827 | 6_4:-43007503 | None:intergenic |
| GAACATCTTCCAAAATACTC+TGG | 0.537949 | 6_4:-43005278 | Msa0988700:CDS |
| TAATATATCATCTCAGCTCC+GGG | 0.539034 | 6_4:+43003729 | None:intergenic |
| CCAATGCTCCGGTTCAATGT+GGG | 0.542094 | 6_4:+43006917 | None:intergenic |
| TGAAGCAATAGGGACATTTG+TGG | 0.543469 | 6_4:-43004612 | Msa0988700:CDS |
| CATTGCATTCACTTCATCGA+CGG | 0.547401 | 6_4:+43005193 | None:intergenic |
| ATATTGGATGCATCGTTCGT+CGG | 0.549916 | 6_4:-43007253 | Msa0988700:CDS |
| TAGAGAGATTGGTGTTAGAG+AGG | 0.553130 | 6_4:-43005139 | Msa0988700:CDS |
| GCTGCCCATGTTGGTAAGGA+TGG | 0.556998 | 6_4:-43005542 | Msa0988700:CDS |
| ACAAAGGCATCCCAATGCTC+CGG | 0.559334 | 6_4:+43006906 | None:intergenic |
| GAAAACATTTACCTTCGGAA+TGG | 0.559486 | 6_4:+43004915 | None:intergenic |
| AATGGTGGAAGTAGTTCAAG+AGG | 0.560046 | 6_4:-43007485 | Msa0988700:CDS |
| TGCACTTGACGCCATTCCGA+AGG | 0.560181 | 6_4:-43004926 | Msa0988700:intron |
| ATTACCACCCGGATATGTAA+AGG | 0.560408 | 6_4:-43004711 | Msa0988700:CDS |
| AGTCAACTTGAACAGAATGA+TGG | 0.564479 | 6_4:-43005021 | Msa0988700:intron |
| CTGTTGTAGCTGTATATGCC+AGG | 0.564555 | 6_4:-43004196 | Msa0988700:intron |
| TTGACTTGGGATGAAGGGAA+CGG | 0.567833 | 6_4:+43003544 | None:intergenic |
| TCCATATAGAAAATCACGGA+TGG | 0.568332 | 6_4:-43005765 | Msa0988700:CDS |
| CCCAATGCTCCGGTTCAATG+TGG | 0.570015 | 6_4:+43006916 | None:intergenic |
| GTGAAGACAATAATGGTCAA+AGG | 0.578657 | 6_4:-43004329 | Msa0988700:CDS |
| TTAGAGAGGCAGACTCATGA+TGG | 0.580110 | 6_4:-43005125 | Msa0988700:CDS |
| TGAGCAACCAAATGTCGGCA+TGG | 0.581831 | 6_4:+43004779 | None:intergenic |
| CAACTGATTCAGCACTACGT+TGG | 0.583155 | 6_4:+43004414 | None:intergenic |
| CACTCCATCCTTACCAACAT+GGG | 0.583925 | 6_4:+43005538 | None:intergenic |
| ATTCATAAAGCTAAAAGTCG+TGG | 0.586493 | 6_4:-43007422 | Msa0988700:CDS |
| TTTATGAATCACTCGCATGC+GGG | 0.587439 | 6_4:+43007436 | None:intergenic |
| TGGATGCAGGCTAAATCATT+GGG | 0.590068 | 6_4:-43003769 | Msa0988700:intron |
| TGGGGATACGTATCATTCGA+AGG | 0.594203 | 6_4:+43006936 | None:intergenic |
| AAATACTCTGGCCGTGTTAG+GGG | 0.594318 | 6_4:-43005266 | Msa0988700:CDS |
| TTCTAAAGATAAGCTAGTTG+AGG | 0.594623 | 6_4:-43003163 | Msa0988700:CDS |
| AGTGAGACGTTGAGCTACAA+AGG | 0.595851 | 6_4:+43006890 | None:intergenic |
| CAAAGTCAAGTATAATCCCA+TGG | 0.596399 | 6_4:-43003518 | Msa0988700:CDS |
| TTCACATAAGTATCAAGGAA+TGG | 0.596460 | 6_4:+43004347 | None:intergenic |
| CAATAGGGACATTTGTGGCA+TGG | 0.597695 | 6_4:-43004607 | Msa0988700:CDS |
| CAAAACCATAACCCCTAACA+CGG | 0.600181 | 6_4:+43005255 | None:intergenic |
| GAAAACTGTGAAGCCTGCTA+TGG | 0.600236 | 6_4:-43004372 | Msa0988700:CDS |
| CAATGCTCCGGTTCAATGTG+GGG | 0.602095 | 6_4:+43006918 | None:intergenic |
| AACAGAATGATGGTGGAGAG+AGG | 0.602687 | 6_4:-43005011 | Msa0988700:intron |
| TCACTCCATCCTTACCAACA+TGG | 0.603845 | 6_4:+43005537 | None:intergenic |
| TGCCATGAGCAACCAAATGT+CGG | 0.603911 | 6_4:+43004774 | None:intergenic |
| GATGAGAGAGGAAAAGACCT+TGG | 0.604046 | 6_4:-43005329 | Msa0988700:CDS |
| CAACTTGAACAGAATGATGG+TGG | 0.604122 | 6_4:-43005018 | Msa0988700:intron |
| TAAATGGCTTCAAGTAATGG+TGG | 0.604383 | 6_4:-43007500 | Msa0988700:CDS |
| CTTTATGAATCACTCGCATG+CGG | 0.607017 | 6_4:+43007435 | None:intergenic |
| GGCATATACAGCTACAACAG+TGG | 0.608828 | 6_4:+43004199 | None:intergenic |
| TTATATGGCTTCATTGCCGG+GGG | 0.609154 | 6_4:-43003709 | Msa0988700:CDS |
| CCATATAGAAAATCACGGAT+GGG | 0.609273 | 6_4:-43005764 | Msa0988700:CDS |
| GGATTGATGTTGCTGTTGAG+AGG | 0.609831 | 6_4:-43004685 | Msa0988700:CDS |
| GAAGGAGATGTCTTGACTGT+TGG | 0.612130 | 6_4:-43004635 | Msa0988700:CDS |
| ATTATATGGCTTCATTGCCG+GGG | 0.612169 | 6_4:-43003710 | Msa0988700:CDS |
| GGAATGGCGTCAAGTGCAAG+AGG | 0.621123 | 6_4:+43004931 | None:intergenic |
| GTGTGGATTGCTGCCCATGT+TGG | 0.622777 | 6_4:-43005551 | Msa0988700:CDS |
| GATTGATGTTGCTGTTGAGA+GGG | 0.626189 | 6_4:-43004684 | Msa0988700:CDS |
| CACAACAAGAAATTACCACC+CGG | 0.626978 | 6_4:-43004722 | Msa0988700:CDS |
| TCATGGCAAATTATATAACA+CGG | 0.629389 | 6_4:-43004759 | Msa0988700:CDS |
| GACATCCATATAGAAAATCA+CGG | 0.630310 | 6_4:-43005769 | Msa0988700:CDS |
| AGCAACCAAATGTCGGCATG+GGG | 0.630470 | 6_4:+43004781 | None:intergenic |
| CATGGCAAATTATATAACAC+GGG | 0.632665 | 6_4:-43004758 | Msa0988700:CDS |
| AGAGGAAGTTCAGAAAGTTG+CGG | 0.637868 | 6_4:-43005507 | Msa0988700:CDS |
| TCAATGCCATTAGTTTGCAT+AGG | 0.638498 | 6_4:+43003387 | None:intergenic |
| AATGCTCTAGGTCAACCAGT+TGG | 0.645736 | 6_4:-43007302 | Msa0988700:CDS |
| TGGGTAAAATGCAACACTGA+TGG | 0.656949 | 6_4:-43002949 | None:intergenic |
| ACTGATTCAGCACTACGTTG+GGG | 0.663689 | 6_4:+43004416 | None:intergenic |
| TAAGCTAGTTGAGGTCGAGG+AGG | 0.666615 | 6_4:-43003154 | Msa0988700:CDS |
| CAAACTAATGGCATTGACTG+TGG | 0.669519 | 6_4:-43003381 | Msa0988700:CDS |
| TCTTTACCTGAAGATGAGAG+AGG | 0.672970 | 6_4:-43005341 | Msa0988700:CDS |
| GAAGAACATCATTACGACCA+AGG | 0.673479 | 6_4:+43005312 | None:intergenic |
| TCGACGGGGATAGATTGTCG+TGG | 0.680143 | 6_4:+43005209 | None:intergenic |
| GAATGGCGTCAAGTGCAAGA+GGG | 0.680502 | 6_4:+43004932 | None:intergenic |
| TGATACCACGTGCATCTGTG+TGG | 0.685481 | 6_4:-43005568 | Msa0988700:CDS |
| AAGGGAACGGCAAATACACA+TGG | 0.692769 | 6_4:+43003557 | None:intergenic |
| GCAATCCACACAGATGCACG+TGG | 0.728624 | 6_4:+43005563 | None:intergenic |
| CTAACCTTTACATATCCGGG+TGG | 0.731735 | 6_4:+43004707 | None:intergenic |
| TTGCATTCACTTCATCGACG+GGG | 0.733869 | 6_4:+43005195 | None:intergenic |
| TATATGGCTTCATTGCCGGG+GGG | 0.786234 | 6_4:-43003708 | Msa0988700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATCAAATTTTATTATCA+GGG | + | chr6_4:43004211-43004230 | None:intergenic | 10.0% |
| !!! | ATAAATCAAATTTTATTATC+AGG | + | chr6_4:43004212-43004231 | None:intergenic | 10.0% |
| !!! | TATATACTTGTTTTATTATT+TGG | - | chr6_4:43005947-43005966 | Msa0988700:intron | 10.0% |
| !! | AATTATATATATATATAGCT+AGG | - | chr6_4:43007190-43007209 | Msa0988700:CDS | 10.0% |
| !! | TACTATTTATCTTCTTTAAA+AGG | - | chr6_4:43003708-43003727 | Msa0988700:CDS | 15.0% |
| !! | ATAATTATTATTCCTGATAT+TGG | + | chr6_4:43003779-43003798 | None:intergenic | 15.0% |
| !! | TAATAACTAATAAGTCAATA+TGG | + | chr6_4:43003924-43003943 | None:intergenic | 15.0% |
| !!! | AAATCAAATTTTATTATCAG+GGG | + | chr6_4:43004210-43004229 | None:intergenic | 15.0% |
| !! | TTACTCAAAAAAAAAAAACT+AGG | + | chr6_4:43004421-43004440 | None:intergenic | 15.0% |
| !! | TAAGTATATGTAAAATTGTA+GGG | - | chr6_4:43004734-43004753 | Msa0988700:CDS | 15.0% |
| !!! | TTTTCTTTTTTTTGTAGAAT+AGG | + | chr6_4:43004843-43004862 | None:intergenic | 15.0% |
| !!! | ATATAGCTTCTTTTTTTTAT+TGG | - | chr6_4:43004982-43005001 | Msa0988700:CDS | 15.0% |
| !! | GAAATATATGTAAATTATGA+TGG | - | chr6_4:43006660-43006679 | Msa0988700:intron | 15.0% |
| !! | ATTTATGAAAGAGATAATAT+TGG | - | chr6_4:43007106-43007125 | Msa0988700:intron | 15.0% |
| !! | CAATATAACTAACAAAACTT+TGG | + | chr6_4:43003182-43003201 | None:intergenic | 20.0% |
| !!! | CAAAGTTTTGTTAGTTATAT+TGG | - | chr6_4:43003180-43003199 | Msa0988700:CDS | 20.0% |
| !!! | ACCTTACAAAGAAAAATTTT+TGG | - | chr6_4:43003263-43003282 | Msa0988700:intron | 20.0% |
| !!! | TCCAAAAATTTTTCTTTGTA+AGG | + | chr6_4:43003267-43003286 | None:intergenic | 20.0% |
| !!! | AAAAATTTTTGGATGAAGTT+CGG | - | chr6_4:43003274-43003293 | Msa0988700:intron | 20.0% |
| !! | AAAGAAGATAAATAGTAGAA+GGG | + | chr6_4:43003705-43003724 | None:intergenic | 20.0% |
| !! | TAAAGAAGATAAATAGTAGA+AGG | + | chr6_4:43003706-43003725 | None:intergenic | 20.0% |
| !! | AAAAACAAGTCATGTAAAAT+TGG | - | chr6_4:43003840-43003859 | Msa0988700:intron | 20.0% |
| !! | TAATAAGTCAATATGGAAAA+AGG | + | chr6_4:43003917-43003936 | None:intergenic | 20.0% |
| !! | ATGTATGTATATATGCAAAT+TGG | - | chr6_4:43004166-43004185 | Msa0988700:intron | 20.0% |
| !! | GTAAGTATATGTAAAATTGT+AGG | - | chr6_4:43004733-43004752 | Msa0988700:CDS | 20.0% |
| !! | AAAAAAAAGAAAAAAGAGAC+TGG | - | chr6_4:43004850-43004869 | Msa0988700:intron | 20.0% |
| !! | TTAAAGAAAACATTTACCTT+CGG | + | chr6_4:43005542-43005561 | None:intergenic | 20.0% |
| !! | CTAATTAGTTACAATACTTT+AGG | + | chr6_4:43005980-43005999 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTAGATTTAGC+TGG | + | chr6_4:43006006-43006025 | None:intergenic | 20.0% |
| !! | TAACATTGTTCATGTAAATT+GGG | + | chr6_4:43006155-43006174 | None:intergenic | 20.0% |
| !! | ATAACATTGTTCATGTAAAT+TGG | + | chr6_4:43006156-43006175 | None:intergenic | 20.0% |
| !! | TACATGAACAATGTTATATT+TGG | - | chr6_4:43006159-43006178 | Msa0988700:intron | 20.0% |
| !!! | CTGTTTAATAGTTGTTATTT+AGG | - | chr6_4:43006283-43006302 | Msa0988700:intron | 20.0% |
| !! | GATGACTAAATTTAAAAATG+TGG | - | chr6_4:43006621-43006640 | Msa0988700:intron | 20.0% |
| !!! | AGAAATAAAGGTATATTCAA+TGG | - | chr6_4:43006956-43006975 | Msa0988700:CDS | 20.0% |
| !!! | AAATCACATACATACATTTT+CGG | + | chr6_4:43007150-43007169 | None:intergenic | 20.0% |
| !!! | CTTTTATATTTGAAGTACTT+TGG | - | chr6_4:43007242-43007261 | Msa0988700:CDS | 20.0% |
| !!! | GAGTTATTTTAAATCGTAAT+TGG | - | chr6_4:43007396-43007415 | Msa0988700:intron | 20.0% |
| !! | TATTGCTGAAAAACTTAAAT+TGG | - | chr6_4:43007480-43007499 | Msa0988700:CDS | 20.0% |
| !! | ATTGCTGAAAAACTTAAATT+GGG | - | chr6_4:43007481-43007500 | Msa0988700:CDS | 20.0% |
| ! | AGTTCAAGAGGAAAAAATAA+TGG | - | chr6_4:43002976-43002995 | Msa0988700:CDS | 25.0% |
| ! | AATAATCACTTTCTTTCTTC+AGG | - | chr6_4:43003116-43003135 | Msa0988700:intron | 25.0% |
| ! | TTCCAATTAGTATGGAAAAT+TGG | - | chr6_4:43003223-43003242 | Msa0988700:intron | 25.0% |
| !!! | AAAATTTTTGGATGAAGTTC+GGG | - | chr6_4:43003275-43003294 | Msa0988700:intron | 25.0% |
| !! | TTGCAGAAAGTTTTCATATT+TGG | - | chr6_4:43003378-43003397 | Msa0988700:CDS | 25.0% |
| ! | AAAAACATTACCTGAAATTC+AGG | + | chr6_4:43003585-43003604 | None:intergenic | 25.0% |
| !! | GTGAAATTATTTTCCAACAT+TGG | - | chr6_4:43004235-43004254 | Msa0988700:CDS | 25.0% |
| ! | ACATATCTGATAAACATACA+AGG | + | chr6_4:43004563-43004582 | None:intergenic | 25.0% |
| ! | GAATGAACATATACGTAATT+AGG | + | chr6_4:43005604-43005623 | None:intergenic | 25.0% |
| ! | TCATGGCAAATTATATAACA+CGG | - | chr6_4:43005690-43005709 | Msa0988700:intron | 25.0% |
| ! | GCAATTGAATCTTGTTAAAT+TGG | - | chr6_4:43005864-43005883 | Msa0988700:intron | 25.0% |
| ! | ATATCACTTATCAATCAGAA+AGG | + | chr6_4:43005930-43005949 | None:intergenic | 25.0% |
| ! | TACTTATGTGAAGACAATAA+TGG | - | chr6_4:43006113-43006132 | Msa0988700:intron | 25.0% |
| ! | ATAACAACTATTAAACAGAG+AGG | + | chr6_4:43006281-43006300 | None:intergenic | 25.0% |
| ! | AGCTGAGATGATATATTATA+TGG | - | chr6_4:43006725-43006744 | Msa0988700:intron | 25.0% |
| !!! | ATACCTTTATTTCTATCCAT+GGG | + | chr6_4:43006950-43006969 | None:intergenic | 25.0% |
| !!! | TATACCTTTATTTCTATCCA+TGG | + | chr6_4:43006951-43006970 | None:intergenic | 25.0% |
| !!! | TTTTTTGACAACGTAATCAA+TGG | - | chr6_4:43006983-43007002 | Msa0988700:CDS | 25.0% |
| !!! | GGTATTTTTAATTCATCATG+TGG | - | chr6_4:43007004-43007023 | Msa0988700:CDS | 25.0% |
| !! | AATCACATACATACATTTTC+GGG | + | chr6_4:43007149-43007168 | None:intergenic | 25.0% |
| !!! | AACTAGCTTATCTTTAGAAT+AGG | + | chr6_4:43007285-43007304 | None:intergenic | 25.0% |
| GGAAAAAATAATGGTAAACG+TGG | - | chr6_4:43002985-43003004 | Msa0988700:intron | 30.0% | |
| ATTCATAAAGCTAAAAGTCG+TGG | - | chr6_4:43003027-43003046 | Msa0988700:intron | 30.0% | |
| !!! | ATACTTTTGAGGTAACTAGT+TGG | - | chr6_4:43003052-43003071 | Msa0988700:intron | 30.0% |
| ! | CTCCAATTTTCCATACTAAT+TGG | + | chr6_4:43003228-43003247 | None:intergenic | 30.0% |
| GCATGAAAATCGTGTAAAAA+TGG | - | chr6_4:43003407-43003426 | Msa0988700:intron | 30.0% | |
| !!! | GGCATTACTACAATTTTTTC+TGG | + | chr6_4:43003619-43003638 | None:intergenic | 30.0% |
| TAAATAGTAGAAGGGTTGTT+AGG | + | chr6_4:43003697-43003716 | None:intergenic | 30.0% | |
| TGCATAATTGCGTGATATAT+AGG | - | chr6_4:43003742-43003761 | Msa0988700:CDS | 30.0% | |
| GTAAACTAAACACCAATATC+AGG | - | chr6_4:43003764-43003783 | Msa0988700:intron | 30.0% | |
| TGTTCAATTTCTATCCATGT+GGG | + | chr6_4:43003978-43003997 | None:intergenic | 30.0% | |
| ATGTTCAATTTCTATCCATG+TGG | + | chr6_4:43003979-43003998 | None:intergenic | 30.0% | |
| TGTATGTATGGGAAATACTT+TGG | - | chr6_4:43004029-43004048 | Msa0988700:intron | 30.0% | |
| !! | CTTTATTTCTTTTTGCCTCT+AGG | - | chr6_4:43004266-43004285 | Msa0988700:CDS | 30.0% |
| AGGAAAATGAATATCTGACT+TGG | + | chr6_4:43004301-43004320 | None:intergenic | 30.0% | |
| CCAAGAATCAACTAATAAGA+TGG | + | chr6_4:43004382-43004401 | None:intergenic | 30.0% | |
| ! | CCATCTTATTAGTTGATTCT+TGG | - | chr6_4:43004379-43004398 | Msa0988700:CDS | 30.0% |
| CAGTTATTGTGAACAAAACT+AGG | + | chr6_4:43004446-43004465 | None:intergenic | 30.0% | |
| ATCTGATAAACATACAAGGT+CGG | + | chr6_4:43004559-43004578 | None:intergenic | 30.0% | |
| ! | GATTTTCTATATGGATGTCT+AGG | + | chr6_4:43004679-43004698 | None:intergenic | 30.0% |
| GACATCCATATAGAAAATCA+CGG | - | chr6_4:43004680-43004699 | Msa0988700:CDS | 30.0% | |
| AAAGTTCAGAAACATGAAAG+AGG | - | chr6_4:43005037-43005056 | Msa0988700:intron | 30.0% | |
| TCGTAATGATGTTCTTCAAT+TGG | - | chr6_4:43005143-43005162 | Msa0988700:CDS | 30.0% | |
| !! | GTATTTTGGAAGATGTTCTA+AGG | + | chr6_4:43005169-43005188 | None:intergenic | 30.0% |
| AACAACCAGATTTGATTCAA+AGG | - | chr6_4:43005465-43005484 | Msa0988700:intron | 30.0% | |
| TCTATCCTTTGAATCAAATC+TGG | + | chr6_4:43005473-43005492 | None:intergenic | 30.0% | |
| CGTATATGTTCATTCACTAT+TGG | - | chr6_4:43005609-43005628 | Msa0988700:intron | 30.0% | |
| !! | TGTTCATTCACTATTGGTTT+AGG | - | chr6_4:43005615-43005634 | Msa0988700:intron | 30.0% |
| !! | GTTCATTCACTATTGGTTTA+GGG | - | chr6_4:43005616-43005635 | Msa0988700:intron | 30.0% |
| CATGGCAAATTATATAACAC+GGG | - | chr6_4:43005691-43005710 | Msa0988700:intron | 30.0% | |
| AATCCTAACCTTTACATATC+CGG | + | chr6_4:43005749-43005768 | None:intergenic | 30.0% | |
| ! | ACAGTTTTCATCTTTTTGCT+TGG | + | chr6_4:43006066-43006085 | None:intergenic | 30.0% |
| TTCACATAAGTATCAAGGAA+TGG | + | chr6_4:43006105-43006124 | None:intergenic | 30.0% | |
| TTGTCTTCACATAAGTATCA+AGG | + | chr6_4:43006110-43006129 | None:intergenic | 30.0% | |
| !! | TTGTTATTTAGGACTGTTAG+AGG | - | chr6_4:43006294-43006313 | Msa0988700:intron | 30.0% |
| ! | TGTTATTTAGGACTGTTAGA+GGG | - | chr6_4:43006295-43006314 | Msa0988700:intron | 30.0% |
| ! | TGTTCTGCTATTCCTATTTT+TGG | - | chr6_4:43006352-43006371 | Msa0988700:intron | 30.0% |
| !! | GTTCTGCTATTCCTATTTTT+GGG | - | chr6_4:43006353-43006372 | Msa0988700:intron | 30.0% |
| !! | GTGTTGTTTGTTCTATTTCA+AGG | - | chr6_4:43006408-43006427 | Msa0988700:intron | 30.0% |
| TCTTAAACTTGTGTGTCAAT+AGG | + | chr6_4:43006541-43006560 | None:intergenic | 30.0% | |
| !! | ATGTAAATTATGATGGATGC+AGG | - | chr6_4:43006667-43006686 | Msa0988700:intron | 30.0% |
| ATAATATATCATCTCAGCTC+CGG | + | chr6_4:43006724-43006743 | None:intergenic | 30.0% | |
| ATATTATATGGCTTCATTGC+CGG | - | chr6_4:43006737-43006756 | Msa0988700:intron | 30.0% | |
| !!! | CTTGACTTTGATTTTGACTT+GGG | + | chr6_4:43006921-43006940 | None:intergenic | 30.0% |
| !!! | ACTTGACTTTGATTTTGACT+TGG | + | chr6_4:43006922-43006941 | None:intergenic | 30.0% |
| AATCCCATGGATAGAAATAA+AGG | - | chr6_4:43006944-43006963 | Msa0988700:CDS | 30.0% | |
| ! | ATCACATACATACATTTTCG+GGG | + | chr6_4:43007148-43007167 | None:intergenic | 30.0% |
| ! | TTCTAAAGATAAGCTAGTTG+AGG | - | chr6_4:43007286-43007305 | Msa0988700:CDS | 30.0% |
| CGTTTCATATTACATGAATC+AGG | - | chr6_4:43007451-43007470 | Msa0988700:CDS | 30.0% | |
| ! | CTTTCTTTCTTCAGGTTCAA+TGG | - | chr6_4:43003124-43003143 | Msa0988700:CDS | 35.0% |
| AATCGTGTAAAAATGGAAGC+TGG | - | chr6_4:43003414-43003433 | Msa0988700:intron | 35.0% | |
| ! | GAAGGTTTTACAATGTCTTC+AGG | + | chr6_4:43003498-43003517 | None:intergenic | 35.0% |
| CAGCACATCATATGTTAACT+TGG | - | chr6_4:43003649-43003668 | Msa0988700:intron | 35.0% | |
| GTTCAATTTCTATCCATGTG+GGG | + | chr6_4:43003977-43003996 | None:intergenic | 35.0% | |
| TGCTGTAGACATGTATGTAT+GGG | - | chr6_4:43004018-43004037 | Msa0988700:intron | 35.0% | |
| CATTAAATCCTGGCCATTAA+TGG | + | chr6_4:43004129-43004148 | None:intergenic | 35.0% | |
| CATTAATGGCCAGGATTTAA+TGG | - | chr6_4:43004127-43004146 | Msa0988700:intron | 35.0% | |
| ACTAAGTACGACATTGTGAT+AGG | + | chr6_4:43004321-43004340 | None:intergenic | 35.0% | |
| ! | TGTAGAGCTTTGTGTAACTT+AGG | + | chr6_4:43004511-43004530 | None:intergenic | 35.0% |
| TTGTAGCTTAGTGTTCTTTC+AGG | - | chr6_4:43004587-43004606 | Msa0988700:CDS | 35.0% | |
| TCCATATAGAAAATCACGGA+TGG | - | chr6_4:43004684-43004703 | Msa0988700:CDS | 35.0% | |
| CCATATAGAAAATCACGGAT+GGG | - | chr6_4:43004685-43004704 | Msa0988700:CDS | 35.0% | |
| AAAGAAAAAAGAGACTGGAG+AGG | - | chr6_4:43004855-43004874 | Msa0988700:intron | 35.0% | |
| GAACATCTTCCAAAATACTC+TGG | - | chr6_4:43005171-43005190 | Msa0988700:CDS | 35.0% | |
| TGTCGTGGAAAAATGTCTTT+GGG | + | chr6_4:43005228-43005247 | None:intergenic | 35.0% | |
| TTGTCGTGGAAAAATGTCTT+TGG | + | chr6_4:43005229-43005248 | None:intergenic | 35.0% | |
| GATGAAGTGAATGCAATGTT+TGG | - | chr6_4:43005261-43005280 | Msa0988700:CDS | 35.0% | |
| TGGCAAAATGAGTAAGAGAA+TGG | - | chr6_4:43005281-43005300 | Msa0988700:CDS | 35.0% | |
| AATGGAGTTACTAGAGAGAT+TGG | - | chr6_4:43005299-43005318 | Msa0988700:CDS | 35.0% | |
| AGTCAACTTGAACAGAATGA+TGG | - | chr6_4:43005428-43005447 | Msa0988700:intron | 35.0% | |
| GAAAACATTTACCTTCGGAA+TGG | + | chr6_4:43005537-43005556 | None:intergenic | 35.0% | |
| ATCCTAACCTTTACATATCC+GGG | + | chr6_4:43005748-43005767 | None:intergenic | 35.0% | |
| ATTGGTCGATGAACATCAAA+AGG | - | chr6_4:43005882-43005901 | Msa0988700:intron | 35.0% | |
| GTGAAGACAATAATGGTCAA+AGG | - | chr6_4:43006120-43006139 | Msa0988700:intron | 35.0% | |
| AAGAGCTTGTGCAACATAAT+TGG | - | chr6_4:43006220-43006239 | Msa0988700:intron | 35.0% | |
| AACAACACACTCCCAAAAAT+AGG | + | chr6_4:43006367-43006386 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGGAGTGTGTTGT+TGG | - | chr6_4:43006366-43006385 | Msa0988700:intron | 35.0% |
| AAAATTTGATCAAGCCTCGT+GGG | - | chr6_4:43006441-43006460 | Msa0988700:intron | 35.0% | |
| TATCTCACGAGGATAAACAA+GGG | - | chr6_4:43006498-43006517 | Msa0988700:intron | 35.0% | |
| !! | GAATAAGCTGATTTTTGCAC+CGG | - | chr6_4:43006559-43006578 | Msa0988700:intron | 35.0% |
| !! | ATTTTTGCACCGGTCAATTT+AGG | - | chr6_4:43006569-43006588 | Msa0988700:intron | 35.0% |
| !! | TTTTTGCACCGGTCAATTTA+GGG | - | chr6_4:43006570-43006589 | Msa0988700:intron | 35.0% |
| AAAACTCACCCTAAATTGAC+CGG | + | chr6_4:43006581-43006600 | None:intergenic | 35.0% | |
| TAATATATCATCTCAGCTCC+GGG | + | chr6_4:43006723-43006742 | None:intergenic | 35.0% | |
| TATTATATGGCTTCATTGCC+GGG | - | chr6_4:43006738-43006757 | Msa0988700:intron | 35.0% | |
| CTTCTTACAACGTCAATCTT+AGG | + | chr6_4:43006771-43006790 | None:intergenic | 35.0% | |
| !!! | TGATTTTGACTTGGGATGAA+GGG | + | chr6_4:43006913-43006932 | None:intergenic | 35.0% |
| !!! | TTGATTTTGACTTGGGATGA+AGG | + | chr6_4:43006914-43006933 | None:intergenic | 35.0% |
| CAAAGTCAAGTATAATCCCA+TGG | - | chr6_4:43006931-43006950 | Msa0988700:CDS | 35.0% | |
| !! | TCAATGCCATTAGTTTGCAT+AGG | + | chr6_4:43007065-43007084 | None:intergenic | 35.0% |
| ACTAAGATACTCGACCATAA+AGG | + | chr6_4:43007330-43007349 | None:intergenic | 35.0% | |
| TAAATCGTAATTGGTTGTGC+TGG | - | chr6_4:43007405-43007424 | Msa0988700:intron | 35.0% | |
| ! | AATGGTGGAAGTAGTTCAAG+AGG | - | chr6_4:43002964-43002983 | Msa0988700:CDS | 40.0% |
| TTTATGAATCACTCGCATGC+GGG | + | chr6_4:43003016-43003035 | None:intergenic | 40.0% | |
| CTTTATGAATCACTCGCATG+CGG | + | chr6_4:43003017-43003036 | None:intergenic | 40.0% | |
| ! | AAGTCGTGGAGATACTTTTG+AGG | - | chr6_4:43003041-43003060 | Msa0988700:intron | 40.0% |
| !!! | CTTTGGCTTTCTTTTCCAAC+TGG | + | chr6_4:43003165-43003184 | None:intergenic | 40.0% |
| ATATTGGATGCATCGTTCGT+CGG | - | chr6_4:43003196-43003215 | Msa0988700:intron | 40.0% | |
| GTGTAAAAATGGAAGCTGGA+AGG | - | chr6_4:43003418-43003437 | Msa0988700:intron | 40.0% | |
| ATGATGTGCTGCAAATCACT+AGG | + | chr6_4:43003640-43003659 | None:intergenic | 40.0% | |
| ATAGTAGAAGGGTTGTTAGG+TGG | + | chr6_4:43003694-43003713 | None:intergenic | 40.0% | |
| GTGCTGTAGACATGTATGTA+TGG | - | chr6_4:43004017-43004036 | Msa0988700:intron | 40.0% | |
| GACACCATACCATTAGATCT+AGG | - | chr6_4:43004062-43004081 | Msa0988700:intron | 40.0% | |
| AATGTGTGGCCTAGATCTAA+TGG | + | chr6_4:43004074-43004093 | None:intergenic | 40.0% | |
| ACACACACTTGAACAATGTG+TGG | + | chr6_4:43004088-43004107 | None:intergenic | 40.0% | |
| TACATACATGAGCAGCACTT+GGG | + | chr6_4:43004155-43004174 | None:intergenic | 40.0% | |
| ATACATACATGAGCAGCACT+TGG | + | chr6_4:43004156-43004175 | None:intergenic | 40.0% | |
| TAAAGTGAGTGTGCCAATGT+TGG | + | chr6_4:43004251-43004270 | None:intergenic | 40.0% | |
| ! | CCCATCCGTGATTTTCTATA+TGG | + | chr6_4:43004688-43004707 | None:intergenic | 40.0% |
| AGAAAATCACGGATGGGATT+AGG | - | chr6_4:43004691-43004710 | Msa0988700:CDS | 40.0% | |
| AGGTCGTCTCGAAGAAAATA+TGG | - | chr6_4:43004711-43004730 | Msa0988700:CDS | 40.0% | |
| CAGAGAAGTCAAAGCAAAGA+AGG | + | chr6_4:43004810-43004829 | None:intergenic | 40.0% | |
| GGATGGAGTGATTGATAAAG+AGG | - | chr6_4:43004924-43004943 | Msa0988700:intron | 40.0% | |
| AGAGGAAGTTCAGAAAGTTG+CGG | - | chr6_4:43004942-43004961 | Msa0988700:CDS | 40.0% | |
| TTGCTTGTCAATGTCACAGA+AGG | - | chr6_4:43005074-43005093 | Msa0988700:intron | 40.0% | |
| TCTTTACCTGAAGATGAGAG+AGG | - | chr6_4:43005108-43005127 | Msa0988700:CDS | 40.0% | |
| ! | TCTTTTCCTCTCTCATCTTC+AGG | + | chr6_4:43005117-43005136 | None:intergenic | 40.0% |
| GAAGAACATCATTACGACCA+AGG | + | chr6_4:43005140-43005159 | None:intergenic | 40.0% | |
| AAAATACTCTGGCCGTGTTA+GGG | - | chr6_4:43005182-43005201 | Msa0988700:CDS | 40.0% | |
| CAAAACCATAACCCCTAACA+CGG | + | chr6_4:43005197-43005216 | None:intergenic | 40.0% | |
| ! | GTGTTAGGGGTTATGGTTTT+GGG | - | chr6_4:43005196-43005215 | Msa0988700:CDS | 40.0% |
| !! | TGTTAGGGGTTATGGTTTTG+GGG | - | chr6_4:43005197-43005216 | Msa0988700:CDS | 40.0% |
| ATTGCATTCACTTCATCGAC+GGG | + | chr6_4:43005258-43005277 | None:intergenic | 40.0% | |
| CATTGCATTCACTTCATCGA+CGG | + | chr6_4:43005259-43005278 | None:intergenic | 40.0% | |
| !! | TAGAGAGATTGGTGTTAGAG+AGG | - | chr6_4:43005310-43005329 | Msa0988700:CDS | 40.0% |
| GATGGAGATACTAGAGAGAA+TGG | - | chr6_4:43005342-43005361 | Msa0988700:CDS | 40.0% | |
| AGGCAACAACCAAAACTTGT+CGG | - | chr6_4:43005401-43005420 | Msa0988700:intron | 40.0% | |
| ! | TGACTTTCTCCGACAAGTTT+TGG | + | chr6_4:43005413-43005432 | None:intergenic | 40.0% |
| CAACTTGAACAGAATGATGG+TGG | - | chr6_4:43005431-43005450 | Msa0988700:intron | 40.0% | |
| CACAACAAGAAATTACCACC+CGG | - | chr6_4:43005727-43005746 | Msa0988700:intron | 40.0% | |
| ATTACCACCCGGATATGTAA+AGG | - | chr6_4:43005738-43005757 | Msa0988700:intron | 40.0% | |
| ! | GATTGATGTTGCTGTTGAGA+GGG | - | chr6_4:43005765-43005784 | Msa0988700:CDS | 40.0% |
| TTGCCTATACCTGTTGAAGA+AGG | - | chr6_4:43005796-43005815 | Msa0988700:CDS | 40.0% | |
| TCTCCTTCTTCAACAGGTAT+AGG | + | chr6_4:43005802-43005821 | None:intergenic | 40.0% | |
| AAGACATCTCCTTCTTCAAC+AGG | + | chr6_4:43005808-43005827 | None:intergenic | 40.0% | |
| ! | TTGACTGTTGGTGAAGCAAT+AGG | - | chr6_4:43005826-43005845 | Msa0988700:intron | 40.0% |
| ! | TGACTGTTGGTGAAGCAATA+GGG | - | chr6_4:43005827-43005846 | Msa0988700:intron | 40.0% |
| TGAAGCAATAGGGACATTTG+TGG | - | chr6_4:43005837-43005856 | Msa0988700:intron | 40.0% | |
| ! | AACTGATTCAGCACTACGTT+GGG | + | chr6_4:43006037-43006056 | None:intergenic | 40.0% |
| !! | CTATTAAACAGAGAGGTACC+TGG | + | chr6_4:43006274-43006293 | None:intergenic | 40.0% |
| GAAAATTTGATCAAGCCTCG+TGG | - | chr6_4:43006440-43006459 | Msa0988700:intron | 40.0% | |
| AACTTATTTACCAACCCACG+AGG | + | chr6_4:43006458-43006477 | None:intergenic | 40.0% | |
| TATCCTCGTGAGATAGATGT+GGG | + | chr6_4:43006493-43006512 | None:intergenic | 40.0% | |
| TTATCCTCGTGAGATAGATG+TGG | + | chr6_4:43006494-43006513 | None:intergenic | 40.0% | |
| CTATCTCACGAGGATAAACA+AGG | - | chr6_4:43006497-43006516 | Msa0988700:intron | 40.0% | |
| ATGGATGCAGGCTAAATCAT+TGG | - | chr6_4:43006679-43006698 | Msa0988700:intron | 40.0% | |
| TGGATGCAGGCTAAATCATT+GGG | - | chr6_4:43006680-43006699 | Msa0988700:intron | 40.0% | |
| ATTATATGGCTTCATTGCCG+GGG | - | chr6_4:43006739-43006758 | Msa0988700:intron | 40.0% | |
| !! | CATTAGTTTGCATAGGACAC+TGG | + | chr6_4:43007058-43007077 | None:intergenic | 40.0% |
| CAGTGTCCTATGCAAACTAA+TGG | - | chr6_4:43007056-43007075 | Msa0988700:CDS | 40.0% | |
| !! | CAAACTAATGGCATTGACTG+TGG | - | chr6_4:43007068-43007087 | Msa0988700:CDS | 40.0% |
| CAGGTTCAATGGAATGCTCT+AGG | - | chr6_4:43003135-43003154 | Msa0988700:CDS | 45.0% | |
| ! | AATGCTCTAGGTCAACCAGT+TGG | - | chr6_4:43003147-43003166 | Msa0988700:CDS | 45.0% |
| ! | TCGGCTGGTTCCAATTAGTA+TGG | - | chr6_4:43003215-43003234 | Msa0988700:intron | 45.0% |
| TGGGGATACGTATCATTCGA+AGG | + | chr6_4:43003516-43003535 | None:intergenic | 45.0% | |
| TACGTATCCCCACATTGAAC+CGG | - | chr6_4:43003524-43003543 | Msa0988700:CDS | 45.0% | |
| AGTGAGACGTTGAGCTACAA+AGG | + | chr6_4:43003562-43003581 | None:intergenic | 45.0% | |
| ACGTCTCACTCCTGAATTTC+AGG | - | chr6_4:43003572-43003591 | Msa0988700:intron | 45.0% | |
| AATTTAGTAGCAGCCCCACA+TGG | - | chr6_4:43003961-43003980 | Msa0988700:intron | 45.0% | |
| GTGGCCTAGATCTAATGGTA+TGG | + | chr6_4:43004069-43004088 | None:intergenic | 45.0% | |
| TGTGTGTGTGATGTGTGTGT+GGG | - | chr6_4:43004101-43004120 | Msa0988700:intron | 45.0% | |
| !! | ACTTGGGTGCCATTAAATCC+TGG | + | chr6_4:43004139-43004158 | None:intergenic | 45.0% |
| ! | ACTTGGCATCTAGAACCTAG+AGG | + | chr6_4:43004284-43004303 | None:intergenic | 45.0% |
| CACTCCATCCTTACCAACAT+GGG | + | chr6_4:43004914-43004933 | None:intergenic | 45.0% | |
| TCACTCCATCCTTACCAACA+TGG | + | chr6_4:43004915-43004934 | None:intergenic | 45.0% | |
| GATGAGAGAGGAAAAGACCT+TGG | - | chr6_4:43005120-43005139 | Msa0988700:CDS | 45.0% | |
| !! | CTAACACGGCCAGAGTATTT+TGG | + | chr6_4:43005183-43005202 | None:intergenic | 45.0% |
| CAAAATACTCTGGCCGTGTT+AGG | - | chr6_4:43005181-43005200 | Msa0988700:CDS | 45.0% | |
| AAATACTCTGGCCGTGTTAG+GGG | - | chr6_4:43005183-43005202 | Msa0988700:CDS | 45.0% | |
| ! | CGTGTTAGGGGTTATGGTTT+TGG | - | chr6_4:43005195-43005214 | Msa0988700:CDS | 45.0% |
| TTGCATTCACTTCATCGACG+GGG | + | chr6_4:43005257-43005276 | None:intergenic | 45.0% | |
| TTAGAGAGGCAGACTCATGA+TGG | - | chr6_4:43005324-43005343 | Msa0988700:CDS | 45.0% | |
| GTAGAAAGAGAGAGAGAGAG+AGG | - | chr6_4:43005381-43005400 | Msa0988700:intron | 45.0% | |
| !! | AACAGAATGATGGTGGAGAG+AGG | - | chr6_4:43005438-43005457 | Msa0988700:intron | 45.0% |
| AAGAGGGCTGCAAGAATCTT+TGG | + | chr6_4:43005504-43005523 | None:intergenic | 45.0% | |
| TGCCATGAGCAACCAAATGT+CGG | + | chr6_4:43005678-43005697 | None:intergenic | 45.0% | |
| CTAACCTTTACATATCCGGG+TGG | + | chr6_4:43005745-43005764 | None:intergenic | 45.0% | |
| CACCCGGATATGTAAAGGTT+AGG | - | chr6_4:43005743-43005762 | Msa0988700:CDS | 45.0% | |
| ! | GGATTGATGTTGCTGTTGAG+AGG | - | chr6_4:43005764-43005783 | Msa0988700:CDS | 45.0% |
| GAAGGAGATGTCTTGACTGT+TGG | - | chr6_4:43005814-43005833 | Msa0988700:intron | 45.0% | |
| CAATAGGGACATTTGTGGCA+TGG | - | chr6_4:43005842-43005861 | Msa0988700:intron | 45.0% | |
| ! | ACTGATTCAGCACTACGTTG+GGG | + | chr6_4:43006036-43006055 | None:intergenic | 45.0% |
| ! | CAACTGATTCAGCACTACGT+TGG | + | chr6_4:43006038-43006057 | None:intergenic | 45.0% |
| GAAAACTGTGAAGCCTGCTA+TGG | - | chr6_4:43006077-43006096 | Msa0988700:intron | 45.0% | |
| TCAAGGAATGGTACCATAGC+AGG | + | chr6_4:43006093-43006112 | None:intergenic | 45.0% | |
| GGCATATACAGCTACAACAG+TGG | + | chr6_4:43006253-43006272 | None:intergenic | 45.0% | |
| CTGTTGTAGCTGTATATGCC+AGG | - | chr6_4:43006253-43006272 | Msa0988700:intron | 45.0% | |
| ATCCTCGTGAGATAGATGTG+GGG | + | chr6_4:43006492-43006511 | None:intergenic | 45.0% | |
| !! | GTGTTGCTTGTCATCAATCC+CGG | - | chr6_4:43006702-43006721 | Msa0988700:intron | 45.0% |
| TTATATGGCTTCATTGCCGG+GGG | - | chr6_4:43006740-43006759 | Msa0988700:intron | 45.0% | |
| AAGGGAACGGCAAATACACA+TGG | + | chr6_4:43006895-43006914 | None:intergenic | 45.0% | |
| !! | TTGACTTGGGATGAAGGGAA+CGG | + | chr6_4:43006908-43006927 | None:intergenic | 45.0% |
| AGATAAGCTAGTTGAGGTCG+AGG | - | chr6_4:43007292-43007311 | Msa0988700:CDS | 45.0% | |
| CAATGCTCCGGTTCAATGTG+GGG | + | chr6_4:43003534-43003553 | None:intergenic | 50.0% | |
| CCAATGCTCCGGTTCAATGT+GGG | + | chr6_4:43003535-43003554 | None:intergenic | 50.0% | |
| ! | CCACATTGAACCGGAGCATT+GGG | - | chr6_4:43003533-43003552 | Msa0988700:CDS | 50.0% |
| !! | ACAAAGGCATCCCAATGCTC+CGG | + | chr6_4:43003546-43003565 | None:intergenic | 50.0% |
| GGGCTGCTACTAAATTACGC+AGG | + | chr6_4:43003957-43003976 | None:intergenic | 50.0% | |
| GTGTGTGTGTGATGTGTGTG+TGG | - | chr6_4:43004100-43004119 | Msa0988700:intron | 50.0% | |
| !! | GTGTGTGTGGGTGCCATTAA+TGG | - | chr6_4:43004113-43004132 | Msa0988700:intron | 50.0% |
| TGATACCACGTGCATCTGTG+TGG | - | chr6_4:43004881-43004900 | Msa0988700:intron | 50.0% | |
| GATTGCTGCCCATGTTGGTA+AGG | - | chr6_4:43004903-43004922 | Msa0988700:intron | 50.0% | |
| GAATGGCGTCAAGTGCAAGA+GGG | + | chr6_4:43005520-43005539 | None:intergenic | 50.0% | |
| ATCATCCCCATGCCGACATT+TGG | - | chr6_4:43005663-43005682 | Msa0988700:intron | 50.0% | |
| AGCAACCAAATGTCGGCATG+GGG | + | chr6_4:43005671-43005690 | None:intergenic | 50.0% | |
| GAGCAACCAAATGTCGGCAT+GGG | + | chr6_4:43005672-43005691 | None:intergenic | 50.0% | |
| TGAGCAACCAAATGTCGGCA+TGG | + | chr6_4:43005673-43005692 | None:intergenic | 50.0% | |
| TGCCGACATTTGGTTGCTCA+TGG | - | chr6_4:43005673-43005692 | Msa0988700:intron | 50.0% | |
| TTTGATCAAGCCTCGTGGGT+TGG | - | chr6_4:43006445-43006464 | Msa0988700:intron | 50.0% | |
| ATCCCCACATCTATCTCACG+AGG | - | chr6_4:43006487-43006506 | Msa0988700:intron | 50.0% | |
| TATATGGCTTCATTGCCGGG+GGG | - | chr6_4:43006741-43006760 | Msa0988700:intron | 50.0% | |
| TCAATCTTAGGATGTCCCCC+CGG | + | chr6_4:43006759-43006778 | None:intergenic | 50.0% | |
| TAAGCTAGTTGAGGTCGAGG+AGG | - | chr6_4:43007295-43007314 | Msa0988700:CDS | 50.0% | |
| TAGTTGAGGTCGAGGAGGAT+TGG | - | chr6_4:43007300-43007319 | Msa0988700:CDS | 50.0% | |
| AGTTGAGGTCGAGGAGGATT+GGG | - | chr6_4:43007301-43007320 | Msa0988700:CDS | 50.0% | |
| GGAGGATTGGGCAACCTTTA+TGG | - | chr6_4:43007313-43007332 | Msa0988700:CDS | 50.0% | |
| CCCACATTGAACCGGAGCAT+TGG | - | chr6_4:43003532-43003551 | Msa0988700:CDS | 55.0% | |
| CCCAATGCTCCGGTTCAATG+TGG | + | chr6_4:43003536-43003555 | None:intergenic | 55.0% | |
| !! | TGTGGGTGCCATTAATGGCC+AGG | - | chr6_4:43004118-43004137 | Msa0988700:intron | 55.0% |
| GCAATCCACACAGATGCACG+TGG | + | chr6_4:43004889-43004908 | None:intergenic | 55.0% | |
| ! | GTGTGGATTGCTGCCCATGT+TGG | - | chr6_4:43004898-43004917 | Msa0988700:intron | 55.0% |
| ! | GCTGCCCATGTTGGTAAGGA+TGG | - | chr6_4:43004907-43004926 | Msa0988700:intron | 55.0% |
| TCTGGCCGTGTTAGGGGTTA+TGG | - | chr6_4:43005189-43005208 | Msa0988700:CDS | 55.0% | |
| TCGACGGGGATAGATTGTCG+TGG | + | chr6_4:43005243-43005262 | None:intergenic | 55.0% | |
| GGAATGGCGTCAAGTGCAAG+AGG | + | chr6_4:43005521-43005540 | None:intergenic | 55.0% | |
| TGCACTTGACGCCATTCCGA+AGG | - | chr6_4:43005523-43005542 | Msa0988700:CDS | 55.0% | |
| TGGATGCATCGTTCGTCGGC+TGG | - | chr6_4:43003200-43003219 | Msa0988700:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 43002952 | 43007519 | 43002952 | ID=Msa0988700;Name=Msa0988700 |
| chr6_4 | mRNA | 43002952 | 43007519 | 43002952 | ID=Msa0988700-mRNA-1;Parent=Msa0988700;Name=Msa0988700-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|0.42|1|1|14|0|680 |
| chr6_4 | exon | 43007409 | 43007519 | 43007409 | ID=Msa0988700-mRNA-1:exon:10025;Parent=Msa0988700-mRNA-1 |
| chr6_4 | exon | 43007175 | 43007333 | 43007175 | ID=Msa0988700-mRNA-1:exon:10024;Parent=Msa0988700-mRNA-1 |
| chr6_4 | exon | 43006878 | 43007087 | 43006878 | ID=Msa0988700-mRNA-1:exon:10023;Parent=Msa0988700-mRNA-1 |
| chr6_4 | exon | 43005739 | 43005831 | 43005739 | ID=Msa0988700-mRNA-1:exon:10022;Parent=Msa0988700-mRNA-1 |
| chr6_4 | exon | 43005499 | 43005612 | 43005499 | ID=Msa0988700-mRNA-1:exon:10021;Parent=Msa0988700-mRNA-1 |
| chr6_4 | exon | 43005091 | 43005378 | 43005091 | ID=Msa0988700-mRNA-1:exon:10020;Parent=Msa0988700-mRNA-1 |
| chr6_4 | exon | 43004927 | 43005028 | 43004927 | ID=Msa0988700-mRNA-1:exon:10019;Parent=Msa0988700-mRNA-1 |
| chr6_4 | exon | 43004568 | 43004834 | 43004568 | ID=Msa0988700-mRNA-1:exon:10018;Parent=Msa0988700-mRNA-1 |
| chr6_4 | exon | 43004197 | 43004471 | 43004197 | ID=Msa0988700-mRNA-1:exon:10017;Parent=Msa0988700-mRNA-1 |
| chr6_4 | exon | 43003669 | 43003782 | 43003669 | ID=Msa0988700-mRNA-1:exon:10016;Parent=Msa0988700-mRNA-1 |
| chr6_4 | exon | 43003506 | 43003581 | 43003506 | ID=Msa0988700-mRNA-1:exon:10015;Parent=Msa0988700-mRNA-1 |
| chr6_4 | exon | 43003317 | 43003412 | 43003317 | ID=Msa0988700-mRNA-1:exon:10014;Parent=Msa0988700-mRNA-1 |
| chr6_4 | exon | 43003124 | 43003214 | 43003124 | ID=Msa0988700-mRNA-1:exon:10013;Parent=Msa0988700-mRNA-1 |
| chr6_4 | exon | 43002952 | 43002998 | 43002952 | ID=Msa0988700-mRNA-1:exon:10012;Parent=Msa0988700-mRNA-1 |
| chr6_4 | CDS | 43007409 | 43007519 | 43007409 | ID=Msa0988700-mRNA-1:cds;Parent=Msa0988700-mRNA-1 |
| chr6_4 | CDS | 43007175 | 43007333 | 43007175 | ID=Msa0988700-mRNA-1:cds;Parent=Msa0988700-mRNA-1 |
| chr6_4 | CDS | 43006878 | 43007087 | 43006878 | ID=Msa0988700-mRNA-1:cds;Parent=Msa0988700-mRNA-1 |
| chr6_4 | CDS | 43005739 | 43005831 | 43005739 | ID=Msa0988700-mRNA-1:cds;Parent=Msa0988700-mRNA-1 |
| chr6_4 | CDS | 43005499 | 43005612 | 43005499 | ID=Msa0988700-mRNA-1:cds;Parent=Msa0988700-mRNA-1 |
| chr6_4 | CDS | 43005091 | 43005378 | 43005091 | ID=Msa0988700-mRNA-1:cds;Parent=Msa0988700-mRNA-1 |
| chr6_4 | CDS | 43004927 | 43005028 | 43004927 | ID=Msa0988700-mRNA-1:cds;Parent=Msa0988700-mRNA-1 |
| chr6_4 | CDS | 43004568 | 43004834 | 43004568 | ID=Msa0988700-mRNA-1:cds;Parent=Msa0988700-mRNA-1 |
| chr6_4 | CDS | 43004197 | 43004471 | 43004197 | ID=Msa0988700-mRNA-1:cds;Parent=Msa0988700-mRNA-1 |
| chr6_4 | CDS | 43003669 | 43003782 | 43003669 | ID=Msa0988700-mRNA-1:cds;Parent=Msa0988700-mRNA-1 |
| chr6_4 | CDS | 43003506 | 43003581 | 43003506 | ID=Msa0988700-mRNA-1:cds;Parent=Msa0988700-mRNA-1 |
| chr6_4 | CDS | 43003317 | 43003412 | 43003317 | ID=Msa0988700-mRNA-1:cds;Parent=Msa0988700-mRNA-1 |
| chr6_4 | CDS | 43003124 | 43003214 | 43003124 | ID=Msa0988700-mRNA-1:cds;Parent=Msa0988700-mRNA-1 |
| chr6_4 | CDS | 43002952 | 43002998 | 43002952 | ID=Msa0988700-mRNA-1:cds;Parent=Msa0988700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
