Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103020 | AES60129.2 | 81.884 | 138 | 17 | 1 | 48 | 177 | 112 | 249 | 1.23e-63 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103020 | G7I2F3 | 81.884 | 138 | 17 | 1 | 48 | 177 | 112 | 249 | 5.88e-64 | 209 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0103020 | Msa0284840 | 0.873467 | 1.437528e-67 | -8.615850e-47 |
| Msa0103020 | Msa0479340 | 0.804665 | 1.936871e-49 | -8.615850e-47 |
| Msa0103020 | Msa0674790 | 0.904370 | 1.318221e-79 | -8.615850e-47 |
| Msa0103020 | Msa0729800 | 0.803694 | 3.084974e-49 | -8.615850e-47 |
| Msa0103020 | Msa0733290 | 0.805245 | 1.465117e-49 | -8.615850e-47 |
| Msa0103020 | Msa0855300 | 0.842004 | 3.368372e-58 | -8.615850e-47 |
| Msa0103020 | Msa0888370 | 0.804943 | 1.694510e-49 | -8.615850e-47 |
| Msa0103020 | Msa0988700 | 0.820271 | 7.492011e-53 | -8.615850e-47 |
| Msa0103020 | Msa1021760 | 0.902799 | 6.695439e-79 | -8.615850e-47 |
| Msa0103020 | Msa1121490 | 0.806666 | 7.361969e-50 | -8.615850e-47 |
| Msa0103020 | Msa1340590 | 0.803799 | 2.933788e-49 | -8.615850e-47 |
| Msa0103020 | Msa1397580 | 0.803827 | 2.894376e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103020 | MtrunA17_Chr5g0420281 | 51.724 | 58 | 27 | 1 | 172 | 228 | 2 | 59 | 2.04e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACATTGTTCATGTAAAT+TGG | 0.140695 | 1_3:-9955364 | None:intergenic |
| TACATGAACAATGTTATATT+TGG | 0.171721 | 1_3:+9955370 | Msa0103020:CDS |
| TGTTCATTCACTATTGGTTT+AGG | 0.188630 | 1_3:+9954826 | Msa0103020:CDS |
| GCAATTGAATCTTGTTAAAT+TGG | 0.231432 | 1_3:+9955075 | Msa0103020:CDS |
| AAGAGCTTGTGCAACATAAT+TGG | 0.275099 | 1_3:+9955431 | Msa0103020:CDS |
| GTTCATTCACTATTGGTTTA+GGG | 0.275600 | 1_3:+9954827 | Msa0103020:CDS |
| CGTATATGTTCATTCACTAT+TGG | 0.318536 | 1_3:+9954820 | None:intergenic |
| TCTTAAACTTGTGTGTCAAT+AGG | 0.329336 | 1_3:-9955749 | None:intergenic |
| AACTGATTCAGCACTACGTT+GGG | 0.333670 | 1_3:-9955245 | None:intergenic |
| AATCCCATGGATAGAAATAA+AGG | 0.380452 | 1_3:+9956155 | Msa0103020:CDS |
| TCTCCTTCTTCAACAGGTAT+AGG | 0.386213 | 1_3:-9955010 | None:intergenic |
| AATCCTAACCTTTACATATC+CGG | 0.395875 | 1_3:-9954957 | None:intergenic |
| TAACATTGTTCATGTAAATT+GGG | 0.396503 | 1_3:-9955363 | None:intergenic |
| ATCATCCCCATGCCGACATT+TGG | 0.400493 | 1_3:+9954874 | Msa0103020:CDS |
| TATACCTTTATTTCTATCCA+TGG | 0.418247 | 1_3:-9956159 | None:intergenic |
| TTGACTGTTGGTGAAGCAAT+AGG | 0.427110 | 1_3:+9955037 | Msa0103020:CDS |
| AAGACATCTCCTTCTTCAAC+AGG | 0.451832 | 1_3:-9955016 | None:intergenic |
| TCAAGGAATGGTACCATAGC+AGG | 0.470566 | 1_3:-9955301 | None:intergenic |
| TTGTCTTCACATAAGTATCA+AGG | 0.481642 | 1_3:-9955318 | None:intergenic |
| ATTGGTCGATGAACATCAAA+AGG | 0.484853 | 1_3:+9955093 | Msa0103020:CDS |
| ATCCTAACCTTTACATATCC+GGG | 0.487205 | 1_3:-9954956 | None:intergenic |
| ATACCTTTATTTCTATCCAT+GGG | 0.497663 | 1_3:-9956158 | None:intergenic |
| TTGCCTATACCTGTTGAAGA+AGG | 0.500655 | 1_3:+9955007 | Msa0103020:CDS |
| TACTTATGTGAAGACAATAA+TGG | 0.501635 | 1_3:+9955324 | Msa0103020:CDS |
| TGCCGACATTTGGTTGCTCA+TGG | 0.524359 | 1_3:+9954884 | Msa0103020:CDS |
| GAGCAACCAAATGTCGGCAT+GGG | 0.527172 | 1_3:-9954880 | None:intergenic |
| TGACTGTTGGTGAAGCAATA+GGG | 0.528262 | 1_3:+9955038 | Msa0103020:CDS |
| TGAAGCAATAGGGACATTTG+TGG | 0.543469 | 1_3:+9955048 | Msa0103020:CDS |
| TTTGATCAAGCCTCGTGGGT+TGG | 0.562858 | 1_3:+9955656 | Msa0103020:CDS |
| CTGTTGTAGCTGTATATGCC+AGG | 0.564555 | 1_3:+9955464 | Msa0103020:CDS |
| TATCCTCGTGAGATAGATGT+GGG | 0.573842 | 1_3:-9955701 | None:intergenic |
| GTGAAGACAATAATGGTCAA+AGG | 0.578657 | 1_3:+9955331 | Msa0103020:CDS |
| TGAGCAACCAAATGTCGGCA+TGG | 0.581831 | 1_3:-9954881 | None:intergenic |
| CAACTGATTCAGCACTACGT+TGG | 0.583155 | 1_3:-9955246 | None:intergenic |
| CTATCTCACGAGGATAAACA+AGG | 0.584696 | 1_3:+9955708 | Msa0103020:CDS |
| AAAATTTGATCAAGCCTCGT+GGG | 0.588114 | 1_3:+9955652 | Msa0103020:CDS |
| GAAAATTTGATCAAGCCTCG+TGG | 0.594365 | 1_3:+9955651 | Msa0103020:CDS |
| CAAAGTCAAGTATAATCCCA+TGG | 0.596399 | 1_3:+9956142 | Msa0103020:CDS |
| TTCACATAAGTATCAAGGAA+TGG | 0.596460 | 1_3:-9955313 | None:intergenic |
| CAATAGGGACATTTGTGGCA+TGG | 0.597695 | 1_3:+9955053 | Msa0103020:CDS |
| GAAAACTGTGAAGCCTGCTA+TGG | 0.600236 | 1_3:+9955288 | Msa0103020:CDS |
| TGCCATGAGCAACCAAATGT+CGG | 0.603911 | 1_3:-9954886 | None:intergenic |
| GGCATATACAGCTACAACAG+TGG | 0.608828 | 1_3:-9955461 | None:intergenic |
| GGATTGATGTTGCTGTTGAG+AGG | 0.609831 | 1_3:+9954975 | Msa0103020:intron |
| GAAGGAGATGTCTTGACTGT+TGG | 0.612130 | 1_3:+9955025 | Msa0103020:CDS |
| GATTGATGTTGCTGTTGAGA+GGG | 0.626189 | 1_3:+9954976 | Msa0103020:CDS |
| CACAACAAGAAATTACCACC+CGG | 0.626978 | 1_3:+9954938 | Msa0103020:CDS |
| TCATGGCAAATTATATAACA+CGG | 0.629389 | 1_3:+9954901 | Msa0103020:CDS |
| AGCAACCAAATGTCGGCATG+GGG | 0.630470 | 1_3:-9954879 | None:intergenic |
| CATGGCAAATTATATAACAC+GGG | 0.632665 | 1_3:+9954902 | Msa0103020:CDS |
| TTATCCTCGTGAGATAGATG+TGG | 0.636482 | 1_3:-9955702 | None:intergenic |
| ACTGATTCAGCACTACGTTG+GGG | 0.663689 | 1_3:-9955244 | None:intergenic |
| AACTTATTTACCAACCCACG+AGG | 0.672003 | 1_3:-9955666 | None:intergenic |
| ATCCCCACATCTATCTCACG+AGG | 0.676403 | 1_3:+9955698 | Msa0103020:CDS |
| TATCTCACGAGGATAAACAA+GGG | 0.704904 | 1_3:+9955709 | Msa0103020:CDS |
| AAGGGAACGACAAATACACA+TGG | 0.724556 | 1_3:-9956103 | None:intergenic |
| CTAACCTTTACATATCCGGG+TGG | 0.731735 | 1_3:-9954953 | None:intergenic |
| ATCCTCGTGAGATAGATGTG+GGG | 0.745850 | 1_3:-9955700 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATACTTGTTTTATTATT+TGG | + | chr1_3:9955158-9955177 | Msa0103020:intron | 10.0% |
| !!! | TATATACTTGTTTTATTATT+TGG | + | chr1_3:9955158-9955177 | Msa0103020:intron | 10.0% |
| !! | GAAATATATGTAAATTATGA+TGG | + | chr1_3:9955871-9955890 | Msa0103020:intron | 15.0% |
| !! | ATTTATGAAAGAGATAATAT+TGG | + | chr1_3:9956316-9956335 | Msa0103020:intron | 15.0% |
| !! | GTAATTATATATATATAGCT+AGG | + | chr1_3:9956398-9956417 | Msa0103020:intron | 15.0% |
| !!! | TTTCACAAATTAATACTTTT+TGG | + | chr1_3:9956923-9956942 | Msa0103020:intron | 15.0% |
| !! | GAAATATATGTAAATTATGA+TGG | + | chr1_3:9955871-9955890 | Msa0103020:intron | 15.0% |
| !! | ATTTATGAAAGAGATAATAT+TGG | + | chr1_3:9956316-9956335 | Msa0103020:intron | 15.0% |
| !! | GTAATTATATATATATAGCT+AGG | + | chr1_3:9956398-9956417 | Msa0103020:intron | 15.0% |
| !!! | TTTCACAAATTAATACTTTT+TGG | + | chr1_3:9956923-9956942 | Msa0103020:intron | 15.0% |
| !! | CTAATTAGTTACAATACTTT+AGG | - | chr1_3:9955191-9955210 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTAGATTTAGC+TGG | - | chr1_3:9955217-9955236 | None:intergenic | 20.0% |
| !! | TAACATTGTTCATGTAAATT+GGG | - | chr1_3:9955366-9955385 | None:intergenic | 20.0% |
| !! | ATAACATTGTTCATGTAAAT+TGG | - | chr1_3:9955367-9955386 | None:intergenic | 20.0% |
| !! | TACATGAACAATGTTATATT+TGG | + | chr1_3:9955370-9955389 | Msa0103020:CDS | 20.0% |
| !!! | CTGTTTAATAGTTGTTATTT+AGG | + | chr1_3:9955494-9955513 | Msa0103020:intron | 20.0% |
| !! | GATGACTAAATTTAAAAATG+TGG | + | chr1_3:9955832-9955851 | Msa0103020:intron | 20.0% |
| !!! | AGAAATAAAGGTATATTCAA+TGG | + | chr1_3:9956167-9956186 | Msa0103020:intron | 20.0% |
| !!! | AAATCACATACATACATTTT+CGG | - | chr1_3:9956360-9956379 | None:intergenic | 20.0% |
| !!! | CTTTTATATTTGAAGTACTT+TGG | + | chr1_3:9956450-9956469 | Msa0103020:intron | 20.0% |
| !!! | GAGTTATTTTAAATCGTAAT+TGG | + | chr1_3:9956604-9956623 | Msa0103020:intron | 20.0% |
| !! | TATTGCTGAAAAACTTAAAT+TGG | + | chr1_3:9956688-9956707 | Msa0103020:intron | 20.0% |
| !! | ATTGCTGAAAAACTTAAATT+GGG | + | chr1_3:9956689-9956708 | Msa0103020:intron | 20.0% |
| !!! | ACAAATTAATACTTTTTGGA+GGG | + | chr1_3:9956927-9956946 | Msa0103020:intron | 20.0% |
| !! | AAAATAAAGATGAAAATGAG+GGG | - | chr1_3:9956969-9956988 | None:intergenic | 20.0% |
| !! | CAAAATAAAGATGAAAATGA+GGG | - | chr1_3:9956970-9956989 | None:intergenic | 20.0% |
| !! | ACAAAATAAAGATGAAAATG+AGG | - | chr1_3:9956971-9956990 | None:intergenic | 20.0% |
| !! | CTAATTAGTTACAATACTTT+AGG | - | chr1_3:9955191-9955210 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTAGATTTAGC+TGG | - | chr1_3:9955217-9955236 | None:intergenic | 20.0% |
| !! | TAACATTGTTCATGTAAATT+GGG | - | chr1_3:9955366-9955385 | None:intergenic | 20.0% |
| !! | ATAACATTGTTCATGTAAAT+TGG | - | chr1_3:9955367-9955386 | None:intergenic | 20.0% |
| !! | TACATGAACAATGTTATATT+TGG | + | chr1_3:9955370-9955389 | Msa0103020:CDS | 20.0% |
| !!! | CTGTTTAATAGTTGTTATTT+AGG | + | chr1_3:9955494-9955513 | Msa0103020:intron | 20.0% |
| !! | GATGACTAAATTTAAAAATG+TGG | + | chr1_3:9955832-9955851 | Msa0103020:intron | 20.0% |
| !!! | AGAAATAAAGGTATATTCAA+TGG | + | chr1_3:9956167-9956186 | Msa0103020:intron | 20.0% |
| !!! | AAATCACATACATACATTTT+CGG | - | chr1_3:9956360-9956379 | None:intergenic | 20.0% |
| !!! | CTTTTATATTTGAAGTACTT+TGG | + | chr1_3:9956450-9956469 | Msa0103020:intron | 20.0% |
| !!! | GAGTTATTTTAAATCGTAAT+TGG | + | chr1_3:9956604-9956623 | Msa0103020:intron | 20.0% |
| !! | TATTGCTGAAAAACTTAAAT+TGG | + | chr1_3:9956688-9956707 | Msa0103020:intron | 20.0% |
| !! | ATTGCTGAAAAACTTAAATT+GGG | + | chr1_3:9956689-9956708 | Msa0103020:intron | 20.0% |
| !!! | ACAAATTAATACTTTTTGGA+GGG | + | chr1_3:9956927-9956946 | Msa0103020:intron | 20.0% |
| !! | AAAATAAAGATGAAAATGAG+GGG | - | chr1_3:9956969-9956988 | None:intergenic | 20.0% |
| !! | CAAAATAAAGATGAAAATGA+GGG | - | chr1_3:9956970-9956989 | None:intergenic | 20.0% |
| !! | ACAAAATAAAGATGAAAATG+AGG | - | chr1_3:9956971-9956990 | None:intergenic | 20.0% |
| ! | TCATGGCAAATTATATAACA+CGG | + | chr1_3:9954901-9954920 | Msa0103020:CDS | 25.0% |
| ! | GCAATTGAATCTTGTTAAAT+TGG | + | chr1_3:9955075-9955094 | Msa0103020:CDS | 25.0% |
| ! | ATATCACTTATCAATCAGAA+AGG | - | chr1_3:9955141-9955160 | None:intergenic | 25.0% |
| ! | TACTTATGTGAAGACAATAA+TGG | + | chr1_3:9955324-9955343 | Msa0103020:CDS | 25.0% |
| ! | ATAACAACTATTAAACAGAG+AGG | - | chr1_3:9955492-9955511 | None:intergenic | 25.0% |
| ! | AGCTGAGATGATATATTATA+TGG | + | chr1_3:9955936-9955955 | Msa0103020:intron | 25.0% |
| ! | ATATTATATGGATTCATTGC+CGG | + | chr1_3:9955948-9955967 | Msa0103020:intron | 25.0% |
| !!! | ATACCTTTATTTCTATCCAT+GGG | - | chr1_3:9956161-9956180 | None:intergenic | 25.0% |
| !!! | TATACCTTTATTTCTATCCA+TGG | - | chr1_3:9956162-9956181 | None:intergenic | 25.0% |
| !!! | TTTTTTGACAACGTAATCAA+TGG | + | chr1_3:9956193-9956212 | Msa0103020:intron | 25.0% |
| !!! | GGTATTTTTAATTCATCATG+TGG | + | chr1_3:9956214-9956233 | Msa0103020:intron | 25.0% |
| !! | AATCACATACATACATTTTC+GGG | - | chr1_3:9956359-9956378 | None:intergenic | 25.0% |
| !!! | AACTAGCTTATCTTTAGAAT+AGG | - | chr1_3:9956493-9956512 | None:intergenic | 25.0% |
| ! | TTATTTACAAATTCTGACTC+AGG | + | chr1_3:9956757-9956776 | Msa0103020:intron | 25.0% |
| ! | TTGACCAATATTGATACTAA+AGG | - | chr1_3:9956794-9956813 | None:intergenic | 25.0% |
| ! | TGTAGAATTAATAGTAGCAA+TGG | + | chr1_3:9956828-9956847 | Msa0103020:intron | 25.0% |
| !!! | CACAAATTAATACTTTTTGG+AGG | + | chr1_3:9956926-9956945 | Msa0103020:intron | 25.0% |
| ! | AAATAAAGATGAAAATGAGG+GGG | - | chr1_3:9956968-9956987 | None:intergenic | 25.0% |
| ! | TCATGGCAAATTATATAACA+CGG | + | chr1_3:9954901-9954920 | Msa0103020:CDS | 25.0% |
| ! | GCAATTGAATCTTGTTAAAT+TGG | + | chr1_3:9955075-9955094 | Msa0103020:CDS | 25.0% |
| ! | ATATCACTTATCAATCAGAA+AGG | - | chr1_3:9955141-9955160 | None:intergenic | 25.0% |
| ! | TACTTATGTGAAGACAATAA+TGG | + | chr1_3:9955324-9955343 | Msa0103020:CDS | 25.0% |
| ! | ATAACAACTATTAAACAGAG+AGG | - | chr1_3:9955492-9955511 | None:intergenic | 25.0% |
| ! | AGCTGAGATGATATATTATA+TGG | + | chr1_3:9955936-9955955 | Msa0103020:intron | 25.0% |
| ! | ATATTATATGGATTCATTGC+CGG | + | chr1_3:9955948-9955967 | Msa0103020:intron | 25.0% |
| !!! | ATACCTTTATTTCTATCCAT+GGG | - | chr1_3:9956161-9956180 | None:intergenic | 25.0% |
| !!! | TATACCTTTATTTCTATCCA+TGG | - | chr1_3:9956162-9956181 | None:intergenic | 25.0% |
| !!! | TTTTTTGACAACGTAATCAA+TGG | + | chr1_3:9956193-9956212 | Msa0103020:intron | 25.0% |
| !!! | GGTATTTTTAATTCATCATG+TGG | + | chr1_3:9956214-9956233 | Msa0103020:intron | 25.0% |
| !! | AATCACATACATACATTTTC+GGG | - | chr1_3:9956359-9956378 | None:intergenic | 25.0% |
| !!! | AACTAGCTTATCTTTAGAAT+AGG | - | chr1_3:9956493-9956512 | None:intergenic | 25.0% |
| ! | TTATTTACAAATTCTGACTC+AGG | + | chr1_3:9956757-9956776 | Msa0103020:intron | 25.0% |
| ! | TTGACCAATATTGATACTAA+AGG | - | chr1_3:9956794-9956813 | None:intergenic | 25.0% |
| ! | TGTAGAATTAATAGTAGCAA+TGG | + | chr1_3:9956828-9956847 | Msa0103020:intron | 25.0% |
| !!! | CACAAATTAATACTTTTTGG+AGG | + | chr1_3:9956926-9956945 | Msa0103020:intron | 25.0% |
| ! | AAATAAAGATGAAAATGAGG+GGG | - | chr1_3:9956968-9956987 | None:intergenic | 25.0% |
| !! | TGTTCATTCACTATTGGTTT+AGG | + | chr1_3:9954826-9954845 | Msa0103020:CDS | 30.0% |
| !! | GTTCATTCACTATTGGTTTA+GGG | + | chr1_3:9954827-9954846 | Msa0103020:CDS | 30.0% |
| CATGGCAAATTATATAACAC+GGG | + | chr1_3:9954902-9954921 | Msa0103020:CDS | 30.0% | |
| AATCCTAACCTTTACATATC+CGG | - | chr1_3:9954960-9954979 | None:intergenic | 30.0% | |
| ! | ACAGTTTTCATCTTTTTGCT+TGG | - | chr1_3:9955277-9955296 | None:intergenic | 30.0% |
| TTCACATAAGTATCAAGGAA+TGG | - | chr1_3:9955316-9955335 | None:intergenic | 30.0% | |
| TTGTCTTCACATAAGTATCA+AGG | - | chr1_3:9955321-9955340 | None:intergenic | 30.0% | |
| !! | TTGTTATTTAGGACTGTTAG+AGG | + | chr1_3:9955505-9955524 | Msa0103020:intron | 30.0% |
| ! | TGTTATTTAGGACTGTTAGA+GGG | + | chr1_3:9955506-9955525 | Msa0103020:intron | 30.0% |
| ! | TGTTCTGCTATTCCTATTTT+TGG | + | chr1_3:9955563-9955582 | Msa0103020:intron | 30.0% |
| !! | GTTCTGCTATTCCTATTTTT+GGG | + | chr1_3:9955564-9955583 | Msa0103020:intron | 30.0% |
| !! | GTGTTGTTTGTTCTATTTCA+AGG | + | chr1_3:9955619-9955638 | Msa0103020:intron | 30.0% |
| TCTTAAACTTGTGTGTCAAT+AGG | - | chr1_3:9955752-9955771 | None:intergenic | 30.0% | |
| !! | ATGTAAATTATGATGGATGC+AGG | + | chr1_3:9955878-9955897 | Msa0103020:intron | 30.0% |
| ATAATATATCATCTCAGCTC+CGG | - | chr1_3:9955935-9955954 | None:intergenic | 30.0% | |
| TATTATATGGATTCATTGCC+GGG | + | chr1_3:9955949-9955968 | Msa0103020:intron | 30.0% | |
| !!! | CTTGACTTTGATTTTGACTT+GGG | - | chr1_3:9956132-9956151 | None:intergenic | 30.0% |
| !!! | ACTTGACTTTGATTTTGACT+TGG | - | chr1_3:9956133-9956152 | None:intergenic | 30.0% |
| AATCCCATGGATAGAAATAA+AGG | + | chr1_3:9956155-9956174 | Msa0103020:CDS | 30.0% | |
| ! | ATCACATACATACATTTTCG+GGG | - | chr1_3:9956358-9956377 | None:intergenic | 30.0% |
| ! | TTCTAAAGATAAGCTAGTTG+AGG | + | chr1_3:9956494-9956513 | Msa0103020:intron | 30.0% |
| CGTTTCATATTACATGAATC+AGG | + | chr1_3:9956659-9956678 | Msa0103020:intron | 30.0% | |
| !!! | AATTCTGACTCAGGTTTTTT+AGG | + | chr1_3:9956766-9956785 | Msa0103020:intron | 30.0% |
| !! | TAATACTTTTTGGAGGGTTT+TGG | + | chr1_3:9956933-9956952 | Msa0103020:intron | 30.0% |
| AATAAAGATGAAAATGAGGG+GGG | - | chr1_3:9956967-9956986 | None:intergenic | 30.0% | |
| !! | TGTTCATTCACTATTGGTTT+AGG | + | chr1_3:9954826-9954845 | Msa0103020:CDS | 30.0% |
| !! | GTTCATTCACTATTGGTTTA+GGG | + | chr1_3:9954827-9954846 | Msa0103020:CDS | 30.0% |
| CATGGCAAATTATATAACAC+GGG | + | chr1_3:9954902-9954921 | Msa0103020:CDS | 30.0% | |
| AATCCTAACCTTTACATATC+CGG | - | chr1_3:9954960-9954979 | None:intergenic | 30.0% | |
| ! | ACAGTTTTCATCTTTTTGCT+TGG | - | chr1_3:9955277-9955296 | None:intergenic | 30.0% |
| TTCACATAAGTATCAAGGAA+TGG | - | chr1_3:9955316-9955335 | None:intergenic | 30.0% | |
| TTGTCTTCACATAAGTATCA+AGG | - | chr1_3:9955321-9955340 | None:intergenic | 30.0% | |
| !! | TTGTTATTTAGGACTGTTAG+AGG | + | chr1_3:9955505-9955524 | Msa0103020:intron | 30.0% |
| ! | TGTTATTTAGGACTGTTAGA+GGG | + | chr1_3:9955506-9955525 | Msa0103020:intron | 30.0% |
| ! | TGTTCTGCTATTCCTATTTT+TGG | + | chr1_3:9955563-9955582 | Msa0103020:intron | 30.0% |
| !! | GTTCTGCTATTCCTATTTTT+GGG | + | chr1_3:9955564-9955583 | Msa0103020:intron | 30.0% |
| !! | GTGTTGTTTGTTCTATTTCA+AGG | + | chr1_3:9955619-9955638 | Msa0103020:intron | 30.0% |
| TCTTAAACTTGTGTGTCAAT+AGG | - | chr1_3:9955752-9955771 | None:intergenic | 30.0% | |
| !! | ATGTAAATTATGATGGATGC+AGG | + | chr1_3:9955878-9955897 | Msa0103020:intron | 30.0% |
| ATAATATATCATCTCAGCTC+CGG | - | chr1_3:9955935-9955954 | None:intergenic | 30.0% | |
| TATTATATGGATTCATTGCC+GGG | + | chr1_3:9955949-9955968 | Msa0103020:intron | 30.0% | |
| !!! | CTTGACTTTGATTTTGACTT+GGG | - | chr1_3:9956132-9956151 | None:intergenic | 30.0% |
| !!! | ACTTGACTTTGATTTTGACT+TGG | - | chr1_3:9956133-9956152 | None:intergenic | 30.0% |
| AATCCCATGGATAGAAATAA+AGG | + | chr1_3:9956155-9956174 | Msa0103020:CDS | 30.0% | |
| ! | ATCACATACATACATTTTCG+GGG | - | chr1_3:9956358-9956377 | None:intergenic | 30.0% |
| ! | TTCTAAAGATAAGCTAGTTG+AGG | + | chr1_3:9956494-9956513 | Msa0103020:intron | 30.0% |
| CGTTTCATATTACATGAATC+AGG | + | chr1_3:9956659-9956678 | Msa0103020:intron | 30.0% | |
| !!! | AATTCTGACTCAGGTTTTTT+AGG | + | chr1_3:9956766-9956785 | Msa0103020:intron | 30.0% |
| !! | TAATACTTTTTGGAGGGTTT+TGG | + | chr1_3:9956933-9956952 | Msa0103020:intron | 30.0% |
| AATAAAGATGAAAATGAGGG+GGG | - | chr1_3:9956967-9956986 | None:intergenic | 30.0% | |
| ATCCTAACCTTTACATATCC+GGG | - | chr1_3:9954959-9954978 | None:intergenic | 35.0% | |
| ATTGGTCGATGAACATCAAA+AGG | + | chr1_3:9955093-9955112 | Msa0103020:CDS | 35.0% | |
| GTGAAGACAATAATGGTCAA+AGG | + | chr1_3:9955331-9955350 | Msa0103020:CDS | 35.0% | |
| AAGAGCTTGTGCAACATAAT+TGG | + | chr1_3:9955431-9955450 | Msa0103020:CDS | 35.0% | |
| AACAACACACTCCCAAAAAT+AGG | - | chr1_3:9955578-9955597 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGGAGTGTGTTGT+TGG | + | chr1_3:9955577-9955596 | Msa0103020:intron | 35.0% |
| AAAATTTGATCAAGCCTCGT+GGG | + | chr1_3:9955652-9955671 | Msa0103020:CDS | 35.0% | |
| TATCTCACGAGGATAAACAA+GGG | + | chr1_3:9955709-9955728 | Msa0103020:CDS | 35.0% | |
| !! | GAATAAGCTGATTTTTGCAC+CGG | + | chr1_3:9955770-9955789 | Msa0103020:CDS | 35.0% |
| !! | ATTTTTGCACCGGTCAATTT+AGG | + | chr1_3:9955780-9955799 | Msa0103020:intron | 35.0% |
| !! | TTTTTGCACCGGTCAATTTA+GGG | + | chr1_3:9955781-9955800 | Msa0103020:intron | 35.0% |
| AAAACTCACCCTAAATTGAC+CGG | - | chr1_3:9955792-9955811 | None:intergenic | 35.0% | |
| TAATATATCATCTCAGCTCC+GGG | - | chr1_3:9955934-9955953 | None:intergenic | 35.0% | |
| ATTATATGGATTCATTGCCG+GGG | + | chr1_3:9955950-9955969 | Msa0103020:intron | 35.0% | |
| CTTCTTACAACGTCAATCTT+AGG | - | chr1_3:9955982-9956001 | None:intergenic | 35.0% | |
| !!! | TGATTTTGACTTGGGATGAA+GGG | - | chr1_3:9956124-9956143 | None:intergenic | 35.0% |
| !!! | TTGATTTTGACTTGGGATGA+AGG | - | chr1_3:9956125-9956144 | None:intergenic | 35.0% |
| CAAAGTCAAGTATAATCCCA+TGG | + | chr1_3:9956142-9956161 | Msa0103020:CDS | 35.0% | |
| !! | TCAATGCCATTAGTTTGCAT+AGG | - | chr1_3:9956275-9956294 | None:intergenic | 35.0% |
| ACTAAGATACTCGACCATAA+AGG | - | chr1_3:9956538-9956557 | None:intergenic | 35.0% | |
| TAAATCGTAATTGGTTGTGC+TGG | + | chr1_3:9956613-9956632 | Msa0103020:intron | 35.0% | |
| ! | CTGTCAGCTTTGATAAAGTT+GGG | + | chr1_3:9956733-9956752 | Msa0103020:intron | 35.0% |
| GGTGCCTTTAGTATCAATAT+TGG | + | chr1_3:9956787-9956806 | Msa0103020:intron | 35.0% | |
| !! | ATGGTTTGCATCTCAGATTT+TGG | + | chr1_3:9956870-9956889 | Msa0103020:intron | 35.0% |
| !! | AGATTTTGGCAGAATTTGCT+AGG | + | chr1_3:9956884-9956903 | Msa0103020:intron | 35.0% |
| ATCCTAACCTTTACATATCC+GGG | - | chr1_3:9954959-9954978 | None:intergenic | 35.0% | |
| ATTGGTCGATGAACATCAAA+AGG | + | chr1_3:9955093-9955112 | Msa0103020:CDS | 35.0% | |
| GTGAAGACAATAATGGTCAA+AGG | + | chr1_3:9955331-9955350 | Msa0103020:CDS | 35.0% | |
| AAGAGCTTGTGCAACATAAT+TGG | + | chr1_3:9955431-9955450 | Msa0103020:CDS | 35.0% | |
| AACAACACACTCCCAAAAAT+AGG | - | chr1_3:9955578-9955597 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGGAGTGTGTTGT+TGG | + | chr1_3:9955577-9955596 | Msa0103020:intron | 35.0% |
| AAAATTTGATCAAGCCTCGT+GGG | + | chr1_3:9955652-9955671 | Msa0103020:CDS | 35.0% | |
| TATCTCACGAGGATAAACAA+GGG | + | chr1_3:9955709-9955728 | Msa0103020:CDS | 35.0% | |
| !! | GAATAAGCTGATTTTTGCAC+CGG | + | chr1_3:9955770-9955789 | Msa0103020:CDS | 35.0% |
| !! | ATTTTTGCACCGGTCAATTT+AGG | + | chr1_3:9955780-9955799 | Msa0103020:intron | 35.0% |
| !! | TTTTTGCACCGGTCAATTTA+GGG | + | chr1_3:9955781-9955800 | Msa0103020:intron | 35.0% |
| AAAACTCACCCTAAATTGAC+CGG | - | chr1_3:9955792-9955811 | None:intergenic | 35.0% | |
| TAATATATCATCTCAGCTCC+GGG | - | chr1_3:9955934-9955953 | None:intergenic | 35.0% | |
| ATTATATGGATTCATTGCCG+GGG | + | chr1_3:9955950-9955969 | Msa0103020:intron | 35.0% | |
| CTTCTTACAACGTCAATCTT+AGG | - | chr1_3:9955982-9956001 | None:intergenic | 35.0% | |
| !!! | TGATTTTGACTTGGGATGAA+GGG | - | chr1_3:9956124-9956143 | None:intergenic | 35.0% |
| !!! | TTGATTTTGACTTGGGATGA+AGG | - | chr1_3:9956125-9956144 | None:intergenic | 35.0% |
| CAAAGTCAAGTATAATCCCA+TGG | + | chr1_3:9956142-9956161 | Msa0103020:CDS | 35.0% | |
| !! | TCAATGCCATTAGTTTGCAT+AGG | - | chr1_3:9956275-9956294 | None:intergenic | 35.0% |
| ACTAAGATACTCGACCATAA+AGG | - | chr1_3:9956538-9956557 | None:intergenic | 35.0% | |
| TAAATCGTAATTGGTTGTGC+TGG | + | chr1_3:9956613-9956632 | Msa0103020:intron | 35.0% | |
| ! | CTGTCAGCTTTGATAAAGTT+GGG | + | chr1_3:9956733-9956752 | Msa0103020:intron | 35.0% |
| GGTGCCTTTAGTATCAATAT+TGG | + | chr1_3:9956787-9956806 | Msa0103020:intron | 35.0% | |
| !! | ATGGTTTGCATCTCAGATTT+TGG | + | chr1_3:9956870-9956889 | Msa0103020:intron | 35.0% |
| !! | AGATTTTGGCAGAATTTGCT+AGG | + | chr1_3:9956884-9956903 | Msa0103020:intron | 35.0% |
| CACAACAAGAAATTACCACC+CGG | + | chr1_3:9954938-9954957 | Msa0103020:CDS | 40.0% | |
| ATTACCACCCGGATATGTAA+AGG | + | chr1_3:9954949-9954968 | Msa0103020:intron | 40.0% | |
| ! | GATTGATGTTGCTGTTGAGA+GGG | + | chr1_3:9954976-9954995 | Msa0103020:CDS | 40.0% |
| TTGCCTATACCTGTTGAAGA+AGG | + | chr1_3:9955007-9955026 | Msa0103020:CDS | 40.0% | |
| TCTCCTTCTTCAACAGGTAT+AGG | - | chr1_3:9955013-9955032 | None:intergenic | 40.0% | |
| AAGACATCTCCTTCTTCAAC+AGG | - | chr1_3:9955019-9955038 | None:intergenic | 40.0% | |
| ! | TTGACTGTTGGTGAAGCAAT+AGG | + | chr1_3:9955037-9955056 | Msa0103020:CDS | 40.0% |
| ! | TGACTGTTGGTGAAGCAATA+GGG | + | chr1_3:9955038-9955057 | Msa0103020:CDS | 40.0% |
| TGAAGCAATAGGGACATTTG+TGG | + | chr1_3:9955048-9955067 | Msa0103020:CDS | 40.0% | |
| ! | AACTGATTCAGCACTACGTT+GGG | - | chr1_3:9955248-9955267 | None:intergenic | 40.0% |
| !! | CTATTAAACAGAGAGGTACC+TGG | - | chr1_3:9955485-9955504 | None:intergenic | 40.0% |
| GAAAATTTGATCAAGCCTCG+TGG | + | chr1_3:9955651-9955670 | Msa0103020:CDS | 40.0% | |
| AACTTATTTACCAACCCACG+AGG | - | chr1_3:9955669-9955688 | None:intergenic | 40.0% | |
| TATCCTCGTGAGATAGATGT+GGG | - | chr1_3:9955704-9955723 | None:intergenic | 40.0% | |
| TTATCCTCGTGAGATAGATG+TGG | - | chr1_3:9955705-9955724 | None:intergenic | 40.0% | |
| CTATCTCACGAGGATAAACA+AGG | + | chr1_3:9955708-9955727 | Msa0103020:CDS | 40.0% | |
| ATGGATGCAGGCTAAATCAT+TGG | + | chr1_3:9955890-9955909 | Msa0103020:intron | 40.0% | |
| TGGATGCAGGCTAAATCATT+GGG | + | chr1_3:9955891-9955910 | Msa0103020:intron | 40.0% | |
| TTATATGGATTCATTGCCGG+GGG | + | chr1_3:9955951-9955970 | Msa0103020:intron | 40.0% | |
| AAGGGAACGACAAATACACA+TGG | - | chr1_3:9956106-9956125 | None:intergenic | 40.0% | |
| !! | CATTAGTTTGCATAGGACAC+TGG | - | chr1_3:9956268-9956287 | None:intergenic | 40.0% |
| CAGTGTCCTATGCAAACTAA+TGG | + | chr1_3:9956266-9956285 | Msa0103020:intron | 40.0% | |
| !! | CAAACTAATGGCATTGACTG+TGG | + | chr1_3:9956278-9956297 | Msa0103020:intron | 40.0% |
| TGGGTAAAATGCAACACTGA+TGG | + | chr1_3:9956708-9956727 | Msa0103020:intron | 40.0% | |
| ! | GCTGTCAGCTTTGATAAAGT+TGG | + | chr1_3:9956732-9956751 | Msa0103020:intron | 40.0% |
| AAACCATTGTACCAGCTCTA+TGG | - | chr1_3:9956857-9956876 | None:intergenic | 40.0% | |
| CACAACAAGAAATTACCACC+CGG | + | chr1_3:9954938-9954957 | Msa0103020:CDS | 40.0% | |
| ATTACCACCCGGATATGTAA+AGG | + | chr1_3:9954949-9954968 | Msa0103020:intron | 40.0% | |
| ! | GATTGATGTTGCTGTTGAGA+GGG | + | chr1_3:9954976-9954995 | Msa0103020:CDS | 40.0% |
| TTGCCTATACCTGTTGAAGA+AGG | + | chr1_3:9955007-9955026 | Msa0103020:CDS | 40.0% | |
| TCTCCTTCTTCAACAGGTAT+AGG | - | chr1_3:9955013-9955032 | None:intergenic | 40.0% | |
| AAGACATCTCCTTCTTCAAC+AGG | - | chr1_3:9955019-9955038 | None:intergenic | 40.0% | |
| ! | TTGACTGTTGGTGAAGCAAT+AGG | + | chr1_3:9955037-9955056 | Msa0103020:CDS | 40.0% |
| ! | TGACTGTTGGTGAAGCAATA+GGG | + | chr1_3:9955038-9955057 | Msa0103020:CDS | 40.0% |
| TGAAGCAATAGGGACATTTG+TGG | + | chr1_3:9955048-9955067 | Msa0103020:CDS | 40.0% | |
| ! | AACTGATTCAGCACTACGTT+GGG | - | chr1_3:9955248-9955267 | None:intergenic | 40.0% |
| !! | CTATTAAACAGAGAGGTACC+TGG | - | chr1_3:9955485-9955504 | None:intergenic | 40.0% |
| GAAAATTTGATCAAGCCTCG+TGG | + | chr1_3:9955651-9955670 | Msa0103020:CDS | 40.0% | |
| AACTTATTTACCAACCCACG+AGG | - | chr1_3:9955669-9955688 | None:intergenic | 40.0% | |
| TATCCTCGTGAGATAGATGT+GGG | - | chr1_3:9955704-9955723 | None:intergenic | 40.0% | |
| TTATCCTCGTGAGATAGATG+TGG | - | chr1_3:9955705-9955724 | None:intergenic | 40.0% | |
| CTATCTCACGAGGATAAACA+AGG | + | chr1_3:9955708-9955727 | Msa0103020:CDS | 40.0% | |
| ATGGATGCAGGCTAAATCAT+TGG | + | chr1_3:9955890-9955909 | Msa0103020:intron | 40.0% | |
| TGGATGCAGGCTAAATCATT+GGG | + | chr1_3:9955891-9955910 | Msa0103020:intron | 40.0% | |
| TTATATGGATTCATTGCCGG+GGG | + | chr1_3:9955951-9955970 | Msa0103020:intron | 40.0% | |
| AAGGGAACGACAAATACACA+TGG | - | chr1_3:9956106-9956125 | None:intergenic | 40.0% | |
| !! | CATTAGTTTGCATAGGACAC+TGG | - | chr1_3:9956268-9956287 | None:intergenic | 40.0% |
| CAGTGTCCTATGCAAACTAA+TGG | + | chr1_3:9956266-9956285 | Msa0103020:intron | 40.0% | |
| !! | CAAACTAATGGCATTGACTG+TGG | + | chr1_3:9956278-9956297 | Msa0103020:intron | 40.0% |
| TGGGTAAAATGCAACACTGA+TGG | + | chr1_3:9956708-9956727 | Msa0103020:intron | 40.0% | |
| ! | GCTGTCAGCTTTGATAAAGT+TGG | + | chr1_3:9956732-9956751 | Msa0103020:intron | 40.0% |
| AAACCATTGTACCAGCTCTA+TGG | - | chr1_3:9956857-9956876 | None:intergenic | 40.0% | |
| TGCCATGAGCAACCAAATGT+CGG | - | chr1_3:9954889-9954908 | None:intergenic | 45.0% | |
| CTAACCTTTACATATCCGGG+TGG | - | chr1_3:9954956-9954975 | None:intergenic | 45.0% | |
| CACCCGGATATGTAAAGGTT+AGG | + | chr1_3:9954954-9954973 | Msa0103020:intron | 45.0% | |
| ! | GGATTGATGTTGCTGTTGAG+AGG | + | chr1_3:9954975-9954994 | Msa0103020:intron | 45.0% |
| GAAGGAGATGTCTTGACTGT+TGG | + | chr1_3:9955025-9955044 | Msa0103020:CDS | 45.0% | |
| CAATAGGGACATTTGTGGCA+TGG | + | chr1_3:9955053-9955072 | Msa0103020:CDS | 45.0% | |
| ! | ACTGATTCAGCACTACGTTG+GGG | - | chr1_3:9955247-9955266 | None:intergenic | 45.0% |
| ! | CAACTGATTCAGCACTACGT+TGG | - | chr1_3:9955249-9955268 | None:intergenic | 45.0% |
| GAAAACTGTGAAGCCTGCTA+TGG | + | chr1_3:9955288-9955307 | Msa0103020:CDS | 45.0% | |
| TCAAGGAATGGTACCATAGC+AGG | - | chr1_3:9955304-9955323 | None:intergenic | 45.0% | |
| GGCATATACAGCTACAACAG+TGG | - | chr1_3:9955464-9955483 | None:intergenic | 45.0% | |
| CTGTTGTAGCTGTATATGCC+AGG | + | chr1_3:9955464-9955483 | Msa0103020:CDS | 45.0% | |
| ATCCTCGTGAGATAGATGTG+GGG | - | chr1_3:9955703-9955722 | None:intergenic | 45.0% | |
| !! | GTGTTGCTTGTCATCAATCC+CGG | + | chr1_3:9955913-9955932 | Msa0103020:intron | 45.0% |
| TATATGGATTCATTGCCGGG+GGG | + | chr1_3:9955952-9955971 | Msa0103020:intron | 45.0% | |
| AGATAAGCTAGTTGAGGTCG+AGG | + | chr1_3:9956500-9956519 | Msa0103020:intron | 45.0% | |
| TAGCCATAGAGCTGGTACAA+TGG | + | chr1_3:9956851-9956870 | Msa0103020:intron | 45.0% | |
| !! | TTGGCAGAATTTGCTAGGCT+AGG | + | chr1_3:9956889-9956908 | Msa0103020:intron | 45.0% |
| TGCTAGGCTAGGAACAAGAA+TGG | + | chr1_3:9956900-9956919 | Msa0103020:intron | 45.0% | |
| TGCCATGAGCAACCAAATGT+CGG | - | chr1_3:9954889-9954908 | None:intergenic | 45.0% | |
| CTAACCTTTACATATCCGGG+TGG | - | chr1_3:9954956-9954975 | None:intergenic | 45.0% | |
| CACCCGGATATGTAAAGGTT+AGG | + | chr1_3:9954954-9954973 | Msa0103020:intron | 45.0% | |
| ! | GGATTGATGTTGCTGTTGAG+AGG | + | chr1_3:9954975-9954994 | Msa0103020:intron | 45.0% |
| GAAGGAGATGTCTTGACTGT+TGG | + | chr1_3:9955025-9955044 | Msa0103020:CDS | 45.0% | |
| CAATAGGGACATTTGTGGCA+TGG | + | chr1_3:9955053-9955072 | Msa0103020:CDS | 45.0% | |
| ! | ACTGATTCAGCACTACGTTG+GGG | - | chr1_3:9955247-9955266 | None:intergenic | 45.0% |
| ! | CAACTGATTCAGCACTACGT+TGG | - | chr1_3:9955249-9955268 | None:intergenic | 45.0% |
| GAAAACTGTGAAGCCTGCTA+TGG | + | chr1_3:9955288-9955307 | Msa0103020:CDS | 45.0% | |
| TCAAGGAATGGTACCATAGC+AGG | - | chr1_3:9955304-9955323 | None:intergenic | 45.0% | |
| GGCATATACAGCTACAACAG+TGG | - | chr1_3:9955464-9955483 | None:intergenic | 45.0% | |
| CTGTTGTAGCTGTATATGCC+AGG | + | chr1_3:9955464-9955483 | Msa0103020:CDS | 45.0% | |
| ATCCTCGTGAGATAGATGTG+GGG | - | chr1_3:9955703-9955722 | None:intergenic | 45.0% | |
| !! | GTGTTGCTTGTCATCAATCC+CGG | + | chr1_3:9955913-9955932 | Msa0103020:intron | 45.0% |
| TATATGGATTCATTGCCGGG+GGG | + | chr1_3:9955952-9955971 | Msa0103020:intron | 45.0% | |
| AGATAAGCTAGTTGAGGTCG+AGG | + | chr1_3:9956500-9956519 | Msa0103020:intron | 45.0% | |
| TAGCCATAGAGCTGGTACAA+TGG | + | chr1_3:9956851-9956870 | Msa0103020:intron | 45.0% | |
| !! | TTGGCAGAATTTGCTAGGCT+AGG | + | chr1_3:9956889-9956908 | Msa0103020:intron | 45.0% |
| TGCTAGGCTAGGAACAAGAA+TGG | + | chr1_3:9956900-9956919 | Msa0103020:intron | 45.0% | |
| ATCATCCCCATGCCGACATT+TGG | + | chr1_3:9954874-9954893 | Msa0103020:CDS | 50.0% | |
| AGCAACCAAATGTCGGCATG+GGG | - | chr1_3:9954882-9954901 | None:intergenic | 50.0% | |
| GAGCAACCAAATGTCGGCAT+GGG | - | chr1_3:9954883-9954902 | None:intergenic | 50.0% | |
| TGAGCAACCAAATGTCGGCA+TGG | - | chr1_3:9954884-9954903 | None:intergenic | 50.0% | |
| TGCCGACATTTGGTTGCTCA+TGG | + | chr1_3:9954884-9954903 | Msa0103020:CDS | 50.0% | |
| TTTGATCAAGCCTCGTGGGT+TGG | + | chr1_3:9955656-9955675 | Msa0103020:CDS | 50.0% | |
| ATCCCCACATCTATCTCACG+AGG | + | chr1_3:9955698-9955717 | Msa0103020:CDS | 50.0% | |
| TCAATCTTAGGATGTCCCCC+CGG | - | chr1_3:9955970-9955989 | None:intergenic | 50.0% | |
| TAAGCTAGTTGAGGTCGAGG+AGG | + | chr1_3:9956503-9956522 | Msa0103020:intron | 50.0% | |
| TAGTTGAGGTCGAGGAGGAT+TGG | + | chr1_3:9956508-9956527 | Msa0103020:intron | 50.0% | |
| AGTTGAGGTCGAGGAGGATT+GGG | + | chr1_3:9956509-9956528 | Msa0103020:intron | 50.0% | |
| GGAGGATTGGGCAACCTTTA+TGG | + | chr1_3:9956521-9956540 | Msa0103020:intron | 50.0% | |
| AGCAATGGTAGCCATAGAGC+TGG | + | chr1_3:9956843-9956862 | Msa0103020:intron | 50.0% | |
| ATCATCCCCATGCCGACATT+TGG | + | chr1_3:9954874-9954893 | Msa0103020:CDS | 50.0% | |
| AGCAACCAAATGTCGGCATG+GGG | - | chr1_3:9954882-9954901 | None:intergenic | 50.0% | |
| GAGCAACCAAATGTCGGCAT+GGG | - | chr1_3:9954883-9954902 | None:intergenic | 50.0% | |
| TGAGCAACCAAATGTCGGCA+TGG | - | chr1_3:9954884-9954903 | None:intergenic | 50.0% | |
| TGCCGACATTTGGTTGCTCA+TGG | + | chr1_3:9954884-9954903 | Msa0103020:CDS | 50.0% | |
| TTTGATCAAGCCTCGTGGGT+TGG | + | chr1_3:9955656-9955675 | Msa0103020:CDS | 50.0% | |
| ATCCCCACATCTATCTCACG+AGG | + | chr1_3:9955698-9955717 | Msa0103020:CDS | 50.0% | |
| TCAATCTTAGGATGTCCCCC+CGG | - | chr1_3:9955970-9955989 | None:intergenic | 50.0% | |
| TAAGCTAGTTGAGGTCGAGG+AGG | + | chr1_3:9956503-9956522 | Msa0103020:intron | 50.0% | |
| TAGTTGAGGTCGAGGAGGAT+TGG | + | chr1_3:9956508-9956527 | Msa0103020:intron | 50.0% | |
| AGTTGAGGTCGAGGAGGATT+GGG | + | chr1_3:9956509-9956528 | Msa0103020:intron | 50.0% | |
| GGAGGATTGGGCAACCTTTA+TGG | + | chr1_3:9956521-9956540 | Msa0103020:intron | 50.0% | |
| AGCAATGGTAGCCATAGAGC+TGG | + | chr1_3:9956843-9956862 | Msa0103020:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 9954825 | 9957035 | 9954825 | ID=Msa0103020;Name=Msa0103020 |
| chr1_3 | mRNA | 9954825 | 9957035 | 9954825 | ID=Msa0103020-mRNA-1;Parent=Msa0103020;Name=Msa0103020-mRNA-1;_AED=0.23;_eAED=0.37;_QI=0|0|0|0.66|0.2|0.16|6|0|262 |
| chr1_3 | exon | 9954825 | 9954964 | 9954825 | ID=Msa0103020-mRNA-1:exon:4070;Parent=Msa0103020-mRNA-1 |
| chr1_3 | exon | 9954976 | 9955114 | 9954976 | ID=Msa0103020-mRNA-1:exon:4071;Parent=Msa0103020-mRNA-1 |
| chr1_3 | exon | 9955241 | 9955485 | 9955241 | ID=Msa0103020-mRNA-1:exon:4072;Parent=Msa0103020-mRNA-1 |
| chr1_3 | exon | 9955641 | 9955791 | 9955641 | ID=Msa0103020-mRNA-1:exon:4073;Parent=Msa0103020-mRNA-1 |
| chr1_3 | exon | 9956101 | 9956176 | 9956101 | ID=Msa0103020-mRNA-1:exon:4074;Parent=Msa0103020-mRNA-1 |
| chr1_3 | exon | 9957001 | 9957035 | 9957001 | ID=Msa0103020-mRNA-1:exon:4075;Parent=Msa0103020-mRNA-1 |
| chr1_3 | CDS | 9954825 | 9954964 | 9954825 | ID=Msa0103020-mRNA-1:cds;Parent=Msa0103020-mRNA-1 |
| chr1_3 | CDS | 9954976 | 9955114 | 9954976 | ID=Msa0103020-mRNA-1:cds;Parent=Msa0103020-mRNA-1 |
| chr1_3 | CDS | 9955241 | 9955485 | 9955241 | ID=Msa0103020-mRNA-1:cds;Parent=Msa0103020-mRNA-1 |
| chr1_3 | CDS | 9955641 | 9955791 | 9955641 | ID=Msa0103020-mRNA-1:cds;Parent=Msa0103020-mRNA-1 |
| chr1_3 | CDS | 9956101 | 9956176 | 9956101 | ID=Msa0103020-mRNA-1:cds;Parent=Msa0103020-mRNA-1 |
| chr1_3 | CDS | 9957001 | 9957035 | 9957001 | ID=Msa0103020-mRNA-1:cds;Parent=Msa0103020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
