AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0284840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0284840 MtrunA17_Chr5g0420281 51.724 58 27 1 64 120 2 59 8.38e-15 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 39 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAACATTGTTCATGTAAAT+TGG 0.140695 2_3:+23822481 None:intergenic
TACATGAACAATGTTATATT+TGG 0.171721 2_3:-23822475 Msa0284840:CDS
AAGAGCTTGTGCAACATAAT+TGG 0.275099 2_3:-23822414 Msa0284840:CDS
TCTTAAACTTGTGTGTCAAT+AGG 0.329336 2_3:+23822096 None:intergenic
ATGGTTTGCATCTCAGATTT+TGG 0.344185 2_3:-23820974 Msa0284840:CDS
GGTGCCTTTAGTATCAATAT+TGG 0.377689 2_3:-23821057 Msa0284840:CDS
AATCCCATGGATAGAAATAA+AGG 0.380452 2_3:-23821690 Msa0284840:intron
GATTTAGGTGTCTGAAACAT+TGG 0.389467 2_3:+23820274 Msa0284830:intron
TAACATTGTTCATGTAAATT+GGG 0.396503 2_3:+23822482 None:intergenic
AAACCATTGTACCAGCTCTA+TGG 0.401548 2_3:+23820990 None:intergenic
TATACCTTTATTTCTATCCA+TGG 0.418247 2_3:+23821686 None:intergenic
TCAAGGAATGGTACCATAGC+AGG 0.470566 2_3:+23822544 None:intergenic
TGCTAGGCTAGGAACAAGAA+TGG 0.478657 2_3:-23820944 Msa0284840:intron
TTGTCTTCACATAAGTATCA+AGG 0.481642 2_3:+23822527 None:intergenic
ATACCTTTATTTCTATCCAT+GGG 0.497663 2_3:+23821687 None:intergenic
TACTTATGTGAAGACAATAA+TGG 0.501635 2_3:-23822521 Msa0284840:CDS
TTGACCAATATTGATACTAA+AGG 0.538289 2_3:+23821053 None:intergenic
TTGGCAGAATTTGCTAGGCT+AGG 0.538785 2_3:-23820955 Msa0284840:CDS
TGTAGAATTAATAGTAGCAA+TGG 0.548900 2_3:-23821016 Msa0284840:CDS
TTTGATCAAGCCTCGTGGGT+TGG 0.562858 2_3:-23822189 Msa0284840:CDS
CTGTTGTAGCTGTATATGCC+AGG 0.564555 2_3:-23822381 Msa0284840:intron
TTGACTTGGGATGAAGGGAA+CGG 0.567833 2_3:+23821729 None:intergenic
TATCCTCGTGAGATAGATGT+GGG 0.573842 2_3:+23822144 None:intergenic
GTGAAGACAATAATGGTCAA+AGG 0.578657 2_3:-23822514 Msa0284840:CDS
CTATCTCACGAGGATAAACA+AGG 0.584696 2_3:-23822137 Msa0284840:CDS
AAAATTTGATCAAGCCTCGT+GGG 0.588114 2_3:-23822193 Msa0284840:CDS
GAAAATTTGATCAAGCCTCG+TGG 0.594365 2_3:-23822194 Msa0284840:CDS
CAAAGTCAAGTATAATCCCA+TGG 0.596399 2_3:-23821703 Msa0284840:CDS
TTCACATAAGTATCAAGGAA+TGG 0.596460 2_3:+23822532 None:intergenic
AGCAATGGTAGCCATAGAGC+TGG 0.598223 2_3:-23821001 Msa0284840:CDS
GAAAACTGTGAAGCCTGCTA+TGG 0.600236 2_3:-23822557 Msa0284840:CDS
TAGCCATAGAGCTGGTACAA+TGG 0.603698 2_3:-23820993 Msa0284840:CDS
GGCATATACAGCTACAACAG+TGG 0.608828 2_3:+23822384 None:intergenic
TTATCCTCGTGAGATAGATG+TGG 0.636482 2_3:+23822143 None:intergenic
AACTTATTTACCAACCCACG+AGG 0.672003 2_3:+23822179 None:intergenic
ATCCCCACATCTATCTCACG+AGG 0.676403 2_3:-23822147 Msa0284840:CDS
AAGGGAACGGCAAATACACA+TGG 0.692769 2_3:+23821742 None:intergenic
TATCTCACGAGGATAAACAA+GGG 0.704904 2_3:-23822136 Msa0284840:CDS
ATCCTCGTGAGATAGATGTG+GGG 0.745850 2_3:+23822145 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATATATGTAAATTATGA+TGG - chr2_3:23820849-23820868 Msa0284840:intron 15.0%
!! ATTTATGAAAGAGATAATAT+TGG - chr2_3:23821295-23821314 Msa0284840:intron 15.0%
!! GTAATTATATATATATAGCT+AGG - chr2_3:23821377-23821396 Msa0284840:intron 15.0%
!!! TTTCACAAATTAATACTTTT+TGG - chr2_3:23821902-23821921 Msa0284840:intron 15.0%
!! GAAATATATGTAAATTATGA+TGG - chr2_3:23820849-23820868 Msa0284840:intron 15.0%
!! ATTTATGAAAGAGATAATAT+TGG - chr2_3:23821295-23821314 Msa0284840:intron 15.0%
!! GTAATTATATATATATAGCT+AGG - chr2_3:23821377-23821396 Msa0284840:intron 15.0%
!!! TTTCACAAATTAATACTTTT+TGG - chr2_3:23821902-23821921 Msa0284840:intron 15.0%
!! TAACATTGTTCATGTAAATT+GGG + chr2_3:23820344-23820363 Msa0284830:CDS 20.0%
!! ATAACATTGTTCATGTAAAT+TGG + chr2_3:23820345-23820364 Msa0284830:CDS 20.0%
!! TACATGAACAATGTTATATT+TGG - chr2_3:23820348-23820367 Msa0284840:intron 20.0%
!!! CTGTTTAATAGTTGTTATTT+AGG - chr2_3:23820472-23820491 Msa0284840:intron 20.0%
!! GATGACTAAATTTAAAAATG+TGG - chr2_3:23820810-23820829 Msa0284840:intron 20.0%
!!! AGAAATAAAGGTATATTCAA+TGG - chr2_3:23821145-23821164 Msa0284840:intron 20.0%
!!! AAATCACATACATACATTTT+CGG + chr2_3:23821339-23821358 None:intergenic 20.0%
!!! CTTTTATATTTGAAGTACTT+TGG - chr2_3:23821429-23821448 Msa0284840:intron 20.0%
!!! GAGTTATTTTAAATCGTAAT+TGG - chr2_3:23821583-23821602 Msa0284840:intron 20.0%
!! TATTGCTGAAAAACTTAAAT+TGG - chr2_3:23821667-23821686 Msa0284840:intron 20.0%
!! ATTGCTGAAAAACTTAAATT+GGG - chr2_3:23821668-23821687 Msa0284840:intron 20.0%
!!! ACAAATTAATACTTTTTGGA+GGG - chr2_3:23821906-23821925 Msa0284840:intron 20.0%
!! AAAATAAAGATGAAAATGAG+GGG + chr2_3:23821948-23821967 None:intergenic 20.0%
!! CAAAATAAAGATGAAAATGA+GGG + chr2_3:23821949-23821968 None:intergenic 20.0%
!! ACAAAATAAAGATGAAAATG+AGG + chr2_3:23821950-23821969 None:intergenic 20.0%
!! TAACATTGTTCATGTAAATT+GGG + chr2_3:23820344-23820363 Msa0284830:CDS 20.0%
!! ATAACATTGTTCATGTAAAT+TGG + chr2_3:23820345-23820364 Msa0284830:CDS 20.0%
!! TACATGAACAATGTTATATT+TGG - chr2_3:23820348-23820367 Msa0284840:intron 20.0%
!!! CTGTTTAATAGTTGTTATTT+AGG - chr2_3:23820472-23820491 Msa0284840:intron 20.0%
!! GATGACTAAATTTAAAAATG+TGG - chr2_3:23820810-23820829 Msa0284840:intron 20.0%
!!! AGAAATAAAGGTATATTCAA+TGG - chr2_3:23821145-23821164 Msa0284840:intron 20.0%
!!! AAATCACATACATACATTTT+CGG + chr2_3:23821339-23821358 None:intergenic 20.0%
!!! CTTTTATATTTGAAGTACTT+TGG - chr2_3:23821429-23821448 Msa0284840:intron 20.0%
!!! GAGTTATTTTAAATCGTAAT+TGG - chr2_3:23821583-23821602 Msa0284840:intron 20.0%
!! TATTGCTGAAAAACTTAAAT+TGG - chr2_3:23821667-23821686 Msa0284840:intron 20.0%
!! ATTGCTGAAAAACTTAAATT+GGG - chr2_3:23821668-23821687 Msa0284840:intron 20.0%
!!! ACAAATTAATACTTTTTGGA+GGG - chr2_3:23821906-23821925 Msa0284840:intron 20.0%
!! AAAATAAAGATGAAAATGAG+GGG + chr2_3:23821948-23821967 None:intergenic 20.0%
!! CAAAATAAAGATGAAAATGA+GGG + chr2_3:23821949-23821968 None:intergenic 20.0%
!! ACAAAATAAAGATGAAAATG+AGG + chr2_3:23821950-23821969 None:intergenic 20.0%
! TACTTATGTGAAGACAATAA+TGG - chr2_3:23820302-23820321 Msa0284840:intron 25.0%
! ATAACAACTATTAAACAGAG+AGG + chr2_3:23820470-23820489 Msa0284830:three_prime_UTR 25.0%
! AGCTGAGATGATATATTATA+TGG - chr2_3:23820914-23820933 Msa0284840:intron 25.0%
! ATATTATATGGATTCATTGC+CGG - chr2_3:23820926-23820945 Msa0284840:intron 25.0%
!!! ATACCTTTATTTCTATCCAT+GGG + chr2_3:23821139-23821158 None:intergenic 25.0%
!!! TATACCTTTATTTCTATCCA+TGG + chr2_3:23821140-23821159 None:intergenic 25.0%
!!! TTTTTTGACAACGTAATCAA+TGG - chr2_3:23821172-23821191 Msa0284840:intron 25.0%
!!! GGTATTTTTAATTCATCATG+TGG - chr2_3:23821193-23821212 Msa0284840:intron 25.0%
!! AATCACATACATACATTTTC+GGG + chr2_3:23821338-23821357 None:intergenic 25.0%
!!! AACTAGCTTATCTTTAGAAT+AGG + chr2_3:23821472-23821491 None:intergenic 25.0%
! TTATTTACAAATTCTGACTC+AGG - chr2_3:23821736-23821755 Msa0284840:CDS 25.0%
! TTGACCAATATTGATACTAA+AGG + chr2_3:23821773-23821792 None:intergenic 25.0%
! TGTAGAATTAATAGTAGCAA+TGG - chr2_3:23821807-23821826 Msa0284840:intron 25.0%
!!! CACAAATTAATACTTTTTGG+AGG - chr2_3:23821905-23821924 Msa0284840:intron 25.0%
! AAATAAAGATGAAAATGAGG+GGG + chr2_3:23821947-23821966 None:intergenic 25.0%
!! GCGTTTAATTATAGCATTTT+TGG - chr2_3:23822052-23822071 Msa0284840:intron 25.0%
!! ATTAAAGTAGCTTTTCTAAC+AGG + chr2_3:23822200-23822219 None:intergenic 25.0%
!!! TGTTGCTATTTAATAGCTTT+TGG - chr2_3:23822269-23822288 Msa0284840:intron 25.0%
!! CCAAAATAAGTGCTATTAAA+GGG - chr2_3:23822363-23822382 Msa0284840:intron 25.0%
!! CAAAATAAGTGCTATTAAAG+GGG - chr2_3:23822364-23822383 Msa0284840:intron 25.0%
!! AAAATAAGTGCTATTAAAGG+GGG - chr2_3:23822365-23822384 Msa0284840:intron 25.0%
! TACTTATGTGAAGACAATAA+TGG - chr2_3:23820302-23820321 Msa0284840:intron 25.0%
! ATAACAACTATTAAACAGAG+AGG + chr2_3:23820470-23820489 Msa0284830:three_prime_UTR 25.0%
! AGCTGAGATGATATATTATA+TGG - chr2_3:23820914-23820933 Msa0284840:intron 25.0%
! ATATTATATGGATTCATTGC+CGG - chr2_3:23820926-23820945 Msa0284840:intron 25.0%
!!! ATACCTTTATTTCTATCCAT+GGG + chr2_3:23821139-23821158 None:intergenic 25.0%
!!! TATACCTTTATTTCTATCCA+TGG + chr2_3:23821140-23821159 None:intergenic 25.0%
!!! TTTTTTGACAACGTAATCAA+TGG - chr2_3:23821172-23821191 Msa0284840:intron 25.0%
!!! GGTATTTTTAATTCATCATG+TGG - chr2_3:23821193-23821212 Msa0284840:intron 25.0%
!! AATCACATACATACATTTTC+GGG + chr2_3:23821338-23821357 None:intergenic 25.0%
!!! AACTAGCTTATCTTTAGAAT+AGG + chr2_3:23821472-23821491 None:intergenic 25.0%
! TTATTTACAAATTCTGACTC+AGG - chr2_3:23821736-23821755 Msa0284840:CDS 25.0%
! TTGACCAATATTGATACTAA+AGG + chr2_3:23821773-23821792 None:intergenic 25.0%
! TGTAGAATTAATAGTAGCAA+TGG - chr2_3:23821807-23821826 Msa0284840:intron 25.0%
!!! CACAAATTAATACTTTTTGG+AGG - chr2_3:23821905-23821924 Msa0284840:intron 25.0%
! AAATAAAGATGAAAATGAGG+GGG + chr2_3:23821947-23821966 None:intergenic 25.0%
!! GCGTTTAATTATAGCATTTT+TGG - chr2_3:23822052-23822071 Msa0284840:intron 25.0%
!! ATTAAAGTAGCTTTTCTAAC+AGG + chr2_3:23822200-23822219 None:intergenic 25.0%
!!! TGTTGCTATTTAATAGCTTT+TGG - chr2_3:23822269-23822288 Msa0284840:intron 25.0%
!! CCAAAATAAGTGCTATTAAA+GGG - chr2_3:23822363-23822382 Msa0284840:intron 25.0%
!! CAAAATAAGTGCTATTAAAG+GGG - chr2_3:23822364-23822383 Msa0284840:intron 25.0%
!! AAAATAAGTGCTATTAAAGG+GGG - chr2_3:23822365-23822384 Msa0284840:intron 25.0%
TTCACATAAGTATCAAGGAA+TGG + chr2_3:23820294-23820313 Msa0284830:CDS 30.0%
TTGTCTTCACATAAGTATCA+AGG + chr2_3:23820299-23820318 Msa0284830:CDS 30.0%
!! TTGTTATTTAGGACTGTTAG+AGG - chr2_3:23820483-23820502 Msa0284840:intron 30.0%
! TGTTATTTAGGACTGTTAGA+GGG - chr2_3:23820484-23820503 Msa0284840:intron 30.0%
! TGTTCTGCTATTCCTATTTT+TGG - chr2_3:23820541-23820560 Msa0284840:intron 30.0%
!! GTTCTGCTATTCCTATTTTT+GGG - chr2_3:23820542-23820561 Msa0284840:intron 30.0%
!! GTGTTGTTTGTTCTATTTCA+AGG - chr2_3:23820597-23820616 Msa0284840:intron 30.0%
TCTTAAACTTGTGTGTCAAT+AGG + chr2_3:23820730-23820749 None:intergenic 30.0%
!! ATGTAAATTATGATGGATGC+AGG - chr2_3:23820856-23820875 Msa0284840:intron 30.0%
ATAATATATCATCTCAGCTC+CGG + chr2_3:23820913-23820932 None:intergenic 30.0%
TATTATATGGATTCATTGCC+GGG - chr2_3:23820927-23820946 Msa0284840:intron 30.0%
!!! CTTGACTTTGATTTTGACTT+GGG + chr2_3:23821110-23821129 None:intergenic 30.0%
!!! ACTTGACTTTGATTTTGACT+TGG + chr2_3:23821111-23821130 None:intergenic 30.0%
AATCCCATGGATAGAAATAA+AGG - chr2_3:23821133-23821152 Msa0284840:intron 30.0%
! ATCACATACATACATTTTCG+GGG + chr2_3:23821337-23821356 None:intergenic 30.0%
! TTCTAAAGATAAGCTAGTTG+AGG - chr2_3:23821473-23821492 Msa0284840:intron 30.0%
CGTTTCATATTACATGAATC+AGG - chr2_3:23821638-23821657 Msa0284840:intron 30.0%
!!! AATTCTGACTCAGGTTTTTT+AGG - chr2_3:23821745-23821764 Msa0284840:CDS 30.0%
!! TAATACTTTTTGGAGGGTTT+TGG - chr2_3:23821912-23821931 Msa0284840:intron 30.0%
AATAAAGATGAAAATGAGGG+GGG + chr2_3:23821946-23821965 None:intergenic 30.0%
AAACCTCTATTTGAGTAGAA+AGG - chr2_3:23822139-23822158 Msa0284840:CDS 30.0%
! AAAAGCTACTTTAATAGCAC+TGG - chr2_3:23822205-23822224 Msa0284840:CDS 30.0%
! ACTTTAATAGCACTGGAATA+AGG - chr2_3:23822212-23822231 Msa0284840:intron 30.0%
! GCCAAAATAAGTGCTATTAA+AGG - chr2_3:23822362-23822381 Msa0284840:intron 30.0%
! CCCTTTAATAGCACTTATTT+TGG + chr2_3:23822366-23822385 None:intergenic 30.0%
!! TGGCTAAAAGGTATTAACAA+AGG + chr2_3:23822532-23822551 None:intergenic 30.0%
TTCACATAAGTATCAAGGAA+TGG + chr2_3:23820294-23820313 Msa0284830:CDS 30.0%
TTGTCTTCACATAAGTATCA+AGG + chr2_3:23820299-23820318 Msa0284830:CDS 30.0%
!! TTGTTATTTAGGACTGTTAG+AGG - chr2_3:23820483-23820502 Msa0284840:intron 30.0%
! TGTTATTTAGGACTGTTAGA+GGG - chr2_3:23820484-23820503 Msa0284840:intron 30.0%
! TGTTCTGCTATTCCTATTTT+TGG - chr2_3:23820541-23820560 Msa0284840:intron 30.0%
!! GTTCTGCTATTCCTATTTTT+GGG - chr2_3:23820542-23820561 Msa0284840:intron 30.0%
!! GTGTTGTTTGTTCTATTTCA+AGG - chr2_3:23820597-23820616 Msa0284840:intron 30.0%
TCTTAAACTTGTGTGTCAAT+AGG + chr2_3:23820730-23820749 None:intergenic 30.0%
!! ATGTAAATTATGATGGATGC+AGG - chr2_3:23820856-23820875 Msa0284840:intron 30.0%
ATAATATATCATCTCAGCTC+CGG + chr2_3:23820913-23820932 None:intergenic 30.0%
TATTATATGGATTCATTGCC+GGG - chr2_3:23820927-23820946 Msa0284840:intron 30.0%
!!! CTTGACTTTGATTTTGACTT+GGG + chr2_3:23821110-23821129 None:intergenic 30.0%
!!! ACTTGACTTTGATTTTGACT+TGG + chr2_3:23821111-23821130 None:intergenic 30.0%
AATCCCATGGATAGAAATAA+AGG - chr2_3:23821133-23821152 Msa0284840:intron 30.0%
! ATCACATACATACATTTTCG+GGG + chr2_3:23821337-23821356 None:intergenic 30.0%
! TTCTAAAGATAAGCTAGTTG+AGG - chr2_3:23821473-23821492 Msa0284840:intron 30.0%
CGTTTCATATTACATGAATC+AGG - chr2_3:23821638-23821657 Msa0284840:intron 30.0%
!!! AATTCTGACTCAGGTTTTTT+AGG - chr2_3:23821745-23821764 Msa0284840:CDS 30.0%
!! TAATACTTTTTGGAGGGTTT+TGG - chr2_3:23821912-23821931 Msa0284840:intron 30.0%
AATAAAGATGAAAATGAGGG+GGG + chr2_3:23821946-23821965 None:intergenic 30.0%
AAACCTCTATTTGAGTAGAA+AGG - chr2_3:23822139-23822158 Msa0284840:CDS 30.0%
! AAAAGCTACTTTAATAGCAC+TGG - chr2_3:23822205-23822224 Msa0284840:CDS 30.0%
! ACTTTAATAGCACTGGAATA+AGG - chr2_3:23822212-23822231 Msa0284840:intron 30.0%
! GCCAAAATAAGTGCTATTAA+AGG - chr2_3:23822362-23822381 Msa0284840:intron 30.0%
! CCCTTTAATAGCACTTATTT+TGG + chr2_3:23822366-23822385 None:intergenic 30.0%
!! TGGCTAAAAGGTATTAACAA+AGG + chr2_3:23822532-23822551 None:intergenic 30.0%
GTGAAGACAATAATGGTCAA+AGG - chr2_3:23820309-23820328 Msa0284840:intron 35.0%
AAGAGCTTGTGCAACATAAT+TGG - chr2_3:23820409-23820428 Msa0284840:intron 35.0%
AACAACACACTCCCAAAAAT+AGG + chr2_3:23820556-23820575 None:intergenic 35.0%
!!! TATTTTTGGGAGTGTGTTGT+TGG - chr2_3:23820555-23820574 Msa0284840:intron 35.0%
AAAATTTGATCAAGCCTCGT+GGG - chr2_3:23820630-23820649 Msa0284840:intron 35.0%
TATCTCACGAGGATAAACAA+GGG - chr2_3:23820687-23820706 Msa0284840:intron 35.0%
!! GAATAAGCTGATTTTTGCAC+CGG - chr2_3:23820748-23820767 Msa0284840:intron 35.0%
!! ATTTTTGCACCGGTCAATTT+AGG - chr2_3:23820758-23820777 Msa0284840:intron 35.0%
!! TTTTTGCACCGGTCAATTTA+GGG - chr2_3:23820759-23820778 Msa0284840:intron 35.0%
AAAACTCACCCTAAATTGAC+CGG + chr2_3:23820770-23820789 None:intergenic 35.0%
TAATATATCATCTCAGCTCC+GGG + chr2_3:23820912-23820931 None:intergenic 35.0%
ATTATATGGATTCATTGCCG+GGG - chr2_3:23820928-23820947 Msa0284840:intron 35.0%
CTTCTTACAACGTCAATCTT+AGG + chr2_3:23820960-23820979 None:intergenic 35.0%
!!! TGATTTTGACTTGGGATGAA+GGG + chr2_3:23821102-23821121 None:intergenic 35.0%
!!! TTGATTTTGACTTGGGATGA+AGG + chr2_3:23821103-23821122 None:intergenic 35.0%
CAAAGTCAAGTATAATCCCA+TGG - chr2_3:23821120-23821139 Msa0284840:intron 35.0%
!! TCAATGCCATTAGTTTGCAT+AGG + chr2_3:23821254-23821273 None:intergenic 35.0%
ACTAAGATACTCGACCATAA+AGG + chr2_3:23821517-23821536 None:intergenic 35.0%
TAAATCGTAATTGGTTGTGC+TGG - chr2_3:23821592-23821611 Msa0284840:intron 35.0%
GGTGCCTTTAGTATCAATAT+TGG - chr2_3:23821766-23821785 Msa0284840:intron 35.0%
!! ATGGTTTGCATCTCAGATTT+TGG - chr2_3:23821849-23821868 Msa0284840:intron 35.0%
!! AGATTTTGGCAGAATTTGCT+AGG - chr2_3:23821863-23821882 Msa0284840:intron 35.0%
TAGCCTTTCTACTCAAATAG+AGG + chr2_3:23822145-23822164 None:intergenic 35.0%
!!! CTTTTGGAAAGCGCTATTAT+AGG - chr2_3:23822285-23822304 Msa0284840:intron 35.0%
ATTCTGGATCGCTTTAATTC+AGG + chr2_3:23822440-23822459 None:intergenic 35.0%
AACATTAATCTTGCTCCTGA+TGG + chr2_3:23822466-23822485 None:intergenic 35.0%
GGAGCAAGATTAATGTTATC+AGG - chr2_3:23822469-23822488 Msa0284840:CDS 35.0%
TTTATTGAAAACCTTCCAGC+TGG + chr2_3:23822496-23822515 None:intergenic 35.0%
! TGTCTGAAACATTGGCTAAA+AGG + chr2_3:23822544-23822563 None:intergenic 35.0%
! GATTTAGGTGTCTGAAACAT+TGG + chr2_3:23822552-23822571 None:intergenic 35.0%
GTGAAGACAATAATGGTCAA+AGG - chr2_3:23820309-23820328 Msa0284840:intron 35.0%
AAGAGCTTGTGCAACATAAT+TGG - chr2_3:23820409-23820428 Msa0284840:intron 35.0%
AACAACACACTCCCAAAAAT+AGG + chr2_3:23820556-23820575 None:intergenic 35.0%
!!! TATTTTTGGGAGTGTGTTGT+TGG - chr2_3:23820555-23820574 Msa0284840:intron 35.0%
AAAATTTGATCAAGCCTCGT+GGG - chr2_3:23820630-23820649 Msa0284840:intron 35.0%
TATCTCACGAGGATAAACAA+GGG - chr2_3:23820687-23820706 Msa0284840:intron 35.0%
!! GAATAAGCTGATTTTTGCAC+CGG - chr2_3:23820748-23820767 Msa0284840:intron 35.0%
!! ATTTTTGCACCGGTCAATTT+AGG - chr2_3:23820758-23820777 Msa0284840:intron 35.0%
!! TTTTTGCACCGGTCAATTTA+GGG - chr2_3:23820759-23820778 Msa0284840:intron 35.0%
AAAACTCACCCTAAATTGAC+CGG + chr2_3:23820770-23820789 None:intergenic 35.0%
TAATATATCATCTCAGCTCC+GGG + chr2_3:23820912-23820931 None:intergenic 35.0%
ATTATATGGATTCATTGCCG+GGG - chr2_3:23820928-23820947 Msa0284840:intron 35.0%
CTTCTTACAACGTCAATCTT+AGG + chr2_3:23820960-23820979 None:intergenic 35.0%
!!! TGATTTTGACTTGGGATGAA+GGG + chr2_3:23821102-23821121 None:intergenic 35.0%
!!! TTGATTTTGACTTGGGATGA+AGG + chr2_3:23821103-23821122 None:intergenic 35.0%
CAAAGTCAAGTATAATCCCA+TGG - chr2_3:23821120-23821139 Msa0284840:intron 35.0%
!! TCAATGCCATTAGTTTGCAT+AGG + chr2_3:23821254-23821273 None:intergenic 35.0%
ACTAAGATACTCGACCATAA+AGG + chr2_3:23821517-23821536 None:intergenic 35.0%
TAAATCGTAATTGGTTGTGC+TGG - chr2_3:23821592-23821611 Msa0284840:intron 35.0%
GGTGCCTTTAGTATCAATAT+TGG - chr2_3:23821766-23821785 Msa0284840:intron 35.0%
!! ATGGTTTGCATCTCAGATTT+TGG - chr2_3:23821849-23821868 Msa0284840:intron 35.0%
!! AGATTTTGGCAGAATTTGCT+AGG - chr2_3:23821863-23821882 Msa0284840:intron 35.0%
TAGCCTTTCTACTCAAATAG+AGG + chr2_3:23822145-23822164 None:intergenic 35.0%
!!! CTTTTGGAAAGCGCTATTAT+AGG - chr2_3:23822285-23822304 Msa0284840:intron 35.0%
ATTCTGGATCGCTTTAATTC+AGG + chr2_3:23822440-23822459 None:intergenic 35.0%
AACATTAATCTTGCTCCTGA+TGG + chr2_3:23822466-23822485 None:intergenic 35.0%
GGAGCAAGATTAATGTTATC+AGG - chr2_3:23822469-23822488 Msa0284840:CDS 35.0%
TTTATTGAAAACCTTCCAGC+TGG + chr2_3:23822496-23822515 None:intergenic 35.0%
! TGTCTGAAACATTGGCTAAA+AGG + chr2_3:23822544-23822563 None:intergenic 35.0%
! GATTTAGGTGTCTGAAACAT+TGG + chr2_3:23822552-23822571 None:intergenic 35.0%
!! CTATTAAACAGAGAGGTACC+TGG + chr2_3:23820463-23820482 Msa0284830:three_prime_UTR 40.0%
GAAAATTTGATCAAGCCTCG+TGG - chr2_3:23820629-23820648 Msa0284840:intron 40.0%
AACTTATTTACCAACCCACG+AGG + chr2_3:23820647-23820666 None:intergenic 40.0%
TATCCTCGTGAGATAGATGT+GGG + chr2_3:23820682-23820701 None:intergenic 40.0%
TTATCCTCGTGAGATAGATG+TGG + chr2_3:23820683-23820702 None:intergenic 40.0%
CTATCTCACGAGGATAAACA+AGG - chr2_3:23820686-23820705 Msa0284840:intron 40.0%
ATGGATGCAGGCTAAATCAT+TGG - chr2_3:23820868-23820887 Msa0284840:intron 40.0%
TGGATGCAGGCTAAATCATT+GGG - chr2_3:23820869-23820888 Msa0284840:intron 40.0%
TTATATGGATTCATTGCCGG+GGG - chr2_3:23820929-23820948 Msa0284840:intron 40.0%
!! CATTAGTTTGCATAGGACAC+TGG + chr2_3:23821247-23821266 None:intergenic 40.0%
CAGTGTCCTATGCAAACTAA+TGG - chr2_3:23821245-23821264 Msa0284840:intron 40.0%
!! CAAACTAATGGCATTGACTG+TGG - chr2_3:23821257-23821276 Msa0284840:intron 40.0%
TGGGTAAAATGCAACACTGA+TGG - chr2_3:23821687-23821706 Msa0284840:intron 40.0%
! CTGTCAGCTTTGATAAAGCT+GGG - chr2_3:23821712-23821731 Msa0284840:CDS 40.0%
AAACCATTGTACCAGCTCTA+TGG + chr2_3:23821836-23821855 None:intergenic 40.0%
TTAATGTTATCAGGTCCAGC+TGG - chr2_3:23822478-23822497 Msa0284840:CDS 40.0%
!! CTATTAAACAGAGAGGTACC+TGG + chr2_3:23820463-23820482 Msa0284830:three_prime_UTR 40.0%
GAAAATTTGATCAAGCCTCG+TGG - chr2_3:23820629-23820648 Msa0284840:intron 40.0%
AACTTATTTACCAACCCACG+AGG + chr2_3:23820647-23820666 None:intergenic 40.0%
TATCCTCGTGAGATAGATGT+GGG + chr2_3:23820682-23820701 None:intergenic 40.0%
TTATCCTCGTGAGATAGATG+TGG + chr2_3:23820683-23820702 None:intergenic 40.0%
CTATCTCACGAGGATAAACA+AGG - chr2_3:23820686-23820705 Msa0284840:intron 40.0%
ATGGATGCAGGCTAAATCAT+TGG - chr2_3:23820868-23820887 Msa0284840:intron 40.0%
TGGATGCAGGCTAAATCATT+GGG - chr2_3:23820869-23820888 Msa0284840:intron 40.0%
TTATATGGATTCATTGCCGG+GGG - chr2_3:23820929-23820948 Msa0284840:intron 40.0%
!! CATTAGTTTGCATAGGACAC+TGG + chr2_3:23821247-23821266 None:intergenic 40.0%
CAGTGTCCTATGCAAACTAA+TGG - chr2_3:23821245-23821264 Msa0284840:intron 40.0%
!! CAAACTAATGGCATTGACTG+TGG - chr2_3:23821257-23821276 Msa0284840:intron 40.0%
TGGGTAAAATGCAACACTGA+TGG - chr2_3:23821687-23821706 Msa0284840:intron 40.0%
! CTGTCAGCTTTGATAAAGCT+GGG - chr2_3:23821712-23821731 Msa0284840:CDS 40.0%
AAACCATTGTACCAGCTCTA+TGG + chr2_3:23821836-23821855 None:intergenic 40.0%
TTAATGTTATCAGGTCCAGC+TGG - chr2_3:23822478-23822497 Msa0284840:CDS 40.0%
GAAAACTGTGAAGCCTGCTA+TGG - chr2_3:23820266-23820285 Msa0284840:CDS 45.0%
TCAAGGAATGGTACCATAGC+AGG + chr2_3:23820282-23820301 Msa0284830:CDS 45.0%
GGCATATACAGCTACAACAG+TGG + chr2_3:23820442-23820461 Msa0284830:three_prime_UTR 45.0%
CTGTTGTAGCTGTATATGCC+AGG - chr2_3:23820442-23820461 Msa0284840:intron 45.0%
ATCCTCGTGAGATAGATGTG+GGG + chr2_3:23820681-23820700 None:intergenic 45.0%
!! GTGTTGCTTCTCATCAATCC+CGG - chr2_3:23820891-23820910 Msa0284840:intron 45.0%
TATATGGATTCATTGCCGGG+GGG - chr2_3:23820930-23820949 Msa0284840:intron 45.0%
AAGGGAACGGCAAATACACA+TGG + chr2_3:23821084-23821103 None:intergenic 45.0%
!! TTGACTTGGGATGAAGGGAA+CGG + chr2_3:23821097-23821116 None:intergenic 45.0%
AGATAAGCTAGTTGAGGTCG+AGG - chr2_3:23821479-23821498 Msa0284840:intron 45.0%
! GCTGTCAGCTTTGATAAAGC+TGG - chr2_3:23821711-23821730 Msa0284840:CDS 45.0%
TAGCCATAGAGCTGGTACAA+TGG - chr2_3:23821830-23821849 Msa0284840:intron 45.0%
!! TTGGCAGAATTTGCTAGGCT+AGG - chr2_3:23821868-23821887 Msa0284840:intron 45.0%
TGCTAGGCTAGGAACAAGAA+TGG - chr2_3:23821879-23821898 Msa0284840:intron 45.0%
! AGGCTCCTCACCTTTTATAG+CGG - chr2_3:23822305-23822324 Msa0284840:intron 45.0%
AAGAAAGCCCCCGCTATAAA+AGG + chr2_3:23822318-23822337 None:intergenic 45.0%
GAAAACTGTGAAGCCTGCTA+TGG - chr2_3:23820266-23820285 Msa0284840:CDS 45.0%
TCAAGGAATGGTACCATAGC+AGG + chr2_3:23820282-23820301 Msa0284830:CDS 45.0%
GGCATATACAGCTACAACAG+TGG + chr2_3:23820442-23820461 Msa0284830:three_prime_UTR 45.0%
CTGTTGTAGCTGTATATGCC+AGG - chr2_3:23820442-23820461 Msa0284840:intron 45.0%
ATCCTCGTGAGATAGATGTG+GGG + chr2_3:23820681-23820700 None:intergenic 45.0%
!! GTGTTGCTTCTCATCAATCC+CGG - chr2_3:23820891-23820910 Msa0284840:intron 45.0%
TATATGGATTCATTGCCGGG+GGG - chr2_3:23820930-23820949 Msa0284840:intron 45.0%
AAGGGAACGGCAAATACACA+TGG + chr2_3:23821084-23821103 None:intergenic 45.0%
!! TTGACTTGGGATGAAGGGAA+CGG + chr2_3:23821097-23821116 None:intergenic 45.0%
AGATAAGCTAGTTGAGGTCG+AGG - chr2_3:23821479-23821498 Msa0284840:intron 45.0%
! GCTGTCAGCTTTGATAAAGC+TGG - chr2_3:23821711-23821730 Msa0284840:CDS 45.0%
TAGCCATAGAGCTGGTACAA+TGG - chr2_3:23821830-23821849 Msa0284840:intron 45.0%
!! TTGGCAGAATTTGCTAGGCT+AGG - chr2_3:23821868-23821887 Msa0284840:intron 45.0%
TGCTAGGCTAGGAACAAGAA+TGG - chr2_3:23821879-23821898 Msa0284840:intron 45.0%
! AGGCTCCTCACCTTTTATAG+CGG - chr2_3:23822305-23822324 Msa0284840:intron 45.0%
AAGAAAGCCCCCGCTATAAA+AGG + chr2_3:23822318-23822337 None:intergenic 45.0%
TTTGATCAAGCCTCGTGGGT+TGG - chr2_3:23820634-23820653 Msa0284840:intron 50.0%
ATCCCCACATCTATCTCACG+AGG - chr2_3:23820676-23820695 Msa0284840:intron 50.0%
TCAATCTTAGGATGTCCCCC+CGG + chr2_3:23820948-23820967 None:intergenic 50.0%
TAAGCTAGTTGAGGTCGAGG+AGG - chr2_3:23821482-23821501 Msa0284840:intron 50.0%
TAGTTGAGGTCGAGGAGGAT+TGG - chr2_3:23821487-23821506 Msa0284840:intron 50.0%
AGTTGAGGTCGAGGAGGATT+GGG - chr2_3:23821488-23821507 Msa0284840:intron 50.0%
GGAGGATTGGGCAACCTTTA+TGG - chr2_3:23821500-23821519 Msa0284840:intron 50.0%
AGCAATGGTAGCCATAGAGC+TGG - chr2_3:23821822-23821841 Msa0284840:intron 50.0%
! GGCTCCTCACCTTTTATAGC+GGG - chr2_3:23822306-23822325 Msa0284840:intron 50.0%
! GCTCCTCACCTTTTATAGCG+GGG - chr2_3:23822307-23822326 Msa0284840:intron 50.0%
! CTCCTCACCTTTTATAGCGG+GGG - chr2_3:23822308-23822327 Msa0284840:intron 50.0%
TTGCTCCTGATGGCTCATTC+TGG + chr2_3:23822456-23822475 None:intergenic 50.0%
TGTTATCAGGTCCAGCTGGA+AGG - chr2_3:23822482-23822501 Msa0284840:CDS 50.0%
TTTGATCAAGCCTCGTGGGT+TGG - chr2_3:23820634-23820653 Msa0284840:intron 50.0%
ATCCCCACATCTATCTCACG+AGG - chr2_3:23820676-23820695 Msa0284840:intron 50.0%
TCAATCTTAGGATGTCCCCC+CGG + chr2_3:23820948-23820967 None:intergenic 50.0%
TAAGCTAGTTGAGGTCGAGG+AGG - chr2_3:23821482-23821501 Msa0284840:intron 50.0%
TAGTTGAGGTCGAGGAGGAT+TGG - chr2_3:23821487-23821506 Msa0284840:intron 50.0%
AGTTGAGGTCGAGGAGGATT+GGG - chr2_3:23821488-23821507 Msa0284840:intron 50.0%
GGAGGATTGGGCAACCTTTA+TGG - chr2_3:23821500-23821519 Msa0284840:intron 50.0%
AGCAATGGTAGCCATAGAGC+TGG - chr2_3:23821822-23821841 Msa0284840:intron 50.0%
! GGCTCCTCACCTTTTATAGC+GGG - chr2_3:23822306-23822325 Msa0284840:intron 50.0%
! GCTCCTCACCTTTTATAGCG+GGG - chr2_3:23822307-23822326 Msa0284840:intron 50.0%
! CTCCTCACCTTTTATAGCGG+GGG - chr2_3:23822308-23822327 Msa0284840:intron 50.0%
TTGCTCCTGATGGCTCATTC+TGG + chr2_3:23822456-23822475 None:intergenic 50.0%
TGTTATCAGGTCCAGCTGGA+AGG - chr2_3:23822482-23822501 Msa0284840:CDS 50.0%
AGCCCCCGCTATAAAAGGTG+AGG + chr2_3:23822313-23822332 None:intergenic 55.0%
GCGATCCAGAATGAGCCATC+AGG - chr2_3:23822448-23822467 Msa0284840:CDS 55.0%
AGCCCCCGCTATAAAAGGTG+AGG + chr2_3:23822313-23822332 None:intergenic 55.0%
GCGATCCAGAATGAGCCATC+AGG - chr2_3:23822448-23822467 Msa0284840:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 23820264 23822581 23820264 ID=Msa0284840;Name=Msa0284840
chr2_3 mRNA 23820264 23822581 23820264 ID=Msa0284840-mRNA-1;Parent=Msa0284840;Name=Msa0284840-mRNA-1;_AED=0.60;_eAED=0.60;_QI=0|0|0|0.4|0.25|0.2|5|0|197
chr2_3 exon 23822382 23822581 23822382 ID=Msa0284840-mRNA-1:exon:9078;Parent=Msa0284840-mRNA-1
chr2_3 exon 23822076 23822226 23822076 ID=Msa0284840-mRNA-1:exon:9077;Parent=Msa0284840-mRNA-1
chr2_3 exon 23821691 23821766 23821691 ID=Msa0284840-mRNA-1:exon:9076;Parent=Msa0284840-mRNA-1
chr2_3 exon 23820945 23821078 23820945 ID=Msa0284840-mRNA-1:exon:9075;Parent=Msa0284840-mRNA-1
chr2_3 exon 23820264 23820296 23820264 ID=Msa0284840-mRNA-1:exon:9074;Parent=Msa0284840-mRNA-1
chr2_3 CDS 23822382 23822581 23822382 ID=Msa0284840-mRNA-1:cds;Parent=Msa0284840-mRNA-1
chr2_3 CDS 23822076 23822226 23822076 ID=Msa0284840-mRNA-1:cds;Parent=Msa0284840-mRNA-1
chr2_3 CDS 23821691 23821766 23821691 ID=Msa0284840-mRNA-1:cds;Parent=Msa0284840-mRNA-1
chr2_3 CDS 23820945 23821078 23820945 ID=Msa0284840-mRNA-1:cds;Parent=Msa0284840-mRNA-1
chr2_3 CDS 23820264 23820296 23820264 ID=Msa0284840-mRNA-1:cds;Parent=Msa0284840-mRNA-1
Gene Sequence

>Msa0284840

ATGAAAACTGTGAAGCCTGCTATGGTACCATTCCTTGATACTTATGTGAAGACAATAATGGTCAAAGGACAATCAGTCCCAATTTACATGAACAATGTTATATTTGGCAAAAGCTATACAGACGAAATAGAAATAGAGAATATAGAAGAGCTTGTGCAACATAATTGGTTAAGTGCCACTGTTGTAGCTGTATATGCCAGGTTCTTGTTTGAAAATTTGATCAAGCCTCGTGGGTTGGTAAATAAGTTCTCATTTTTATCCCCACATCTATCTCACGAGGATAAACAAGGGCAACAAATAGCAGACATCCTATTGACACACAAGTTTAAGAATAAGCTGATTTTTGCACCGTGCCATGTGTATTTGCCGTTCCCTTCATCCCAAGTCAAAATCAAAGTCAAGTATAATCCCATGGATAGAAATAAAGGTGCCTTTAGTATCAATATTGGTCAATGTTCAGCTTTGAATGTAGAATTAATAGTAGCAATGGTAGCCATAGAGCTGGTACAATGGTTTGCATCTCAGATTTTGGCAGAATTTGCTAGGCTAGGAACAAGAATGCCAATGTTTCAGACACCTAAATCTGATTCATGA

Protein sequence

>Msa0284840

MKTVKPAMVPFLDTYVKTIMVKGQSVPIYMNNVIFGKSYTDEIEIENIEELVQHNWLSATVVAVYARFLFENLIKPRGLVNKFSFLSPHLSHEDKQGQQIADILLTHKFKNKLIFAPCHVYLPFPSSQVKIKVKYNPMDRNKGAFSINIGQCSALNVELIVAMVAIELVQWFASQILAEFARLGTRMPMFQTPKSDS*