Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991710 | XP_013443336.1 | 98.734 | 158 | 2 | 0 | 1 | 158 | 1 | 158 | 3.40e-109 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991710 | sp|Q9XH44|CET1_TOBAC | 72.785 | 158 | 42 | 1 | 2 | 158 | 3 | 160 | 1.76e-82 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991710 | G7ZV36 | 98.734 | 158 | 2 | 0 | 1 | 158 | 1 | 158 | 1.62e-109 | 320 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0374040 | Msa0991710 | 0.805979 | 1.027520e-49 | -8.615850e-47 |
| Msa0448190 | Msa0991710 | 0.807652 | 4.553198e-50 | -8.615850e-47 |
| Msa0991710 | Msa1069350 | 0.809977 | 1.449313e-50 | -8.615850e-47 |
| Msa0991710 | Msa1108560 | 0.815323 | 9.804505e-52 | -8.615850e-47 |
| Msa0991710 | Msa1181090 | 0.815714 | 8.025580e-52 | -8.615850e-47 |
| Msa0991710 | Msa1322500 | 0.808449 | 3.081127e-50 | -8.615850e-47 |
| Msa0991710 | Msa1343590 | 0.800898 | 1.161134e-48 | -8.615850e-47 |
| Msa0873880 | Msa0991710 | 0.809995 | 1.436044e-50 | -8.615850e-47 |
| Msa0910890 | Msa0991710 | 0.862294 | 5.611143e-64 | -8.615850e-47 |
| Msa0956450 | Msa0991710 | 0.840913 | 6.530818e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991710 | MtrunA17_Chr6g0472451 | 98.734 | 158 | 2 | 0 | 1 | 158 | 1 | 158 | 3.13e-113 | 320 |
| Msa0991710 | MtrunA17_Chr7g0266201 | 68.182 | 154 | 48 | 1 | 6 | 158 | 7 | 160 | 7.06e-76 | 226 |
| Msa0991710 | MtrunA17_Chr2g0321301 | 62.048 | 166 | 62 | 1 | 1 | 165 | 1 | 166 | 1.75e-75 | 224 |
| Msa0991710 | MtrunA17_Chr1g0178751 | 61.538 | 156 | 58 | 1 | 6 | 159 | 7 | 162 | 1.07e-71 | 215 |
| Msa0991710 | MtrunA17_Chr7g0252784 | 59.868 | 152 | 61 | 0 | 7 | 158 | 8 | 159 | 3.59e-66 | 201 |
| Msa0991710 | MtrunA17_Chr6g0461711 | 57.792 | 154 | 65 | 0 | 6 | 159 | 7 | 160 | 2.36e-62 | 191 |
| Msa0991710 | MtrunA17_Chr7g0214771 | 56.688 | 157 | 67 | 1 | 3 | 158 | 4 | 160 | 5.88e-60 | 185 |
| Msa0991710 | MtrunA17_Chr7g0214761 | 56.051 | 157 | 68 | 1 | 3 | 158 | 4 | 160 | 2.80e-59 | 184 |
| Msa0991710 | MtrunA17_Chr7g0252800 | 57.895 | 152 | 64 | 0 | 7 | 158 | 9 | 160 | 6.55e-59 | 182 |
| Msa0991710 | MtrunA17_Chr8g0392741 | 52.830 | 159 | 73 | 2 | 1 | 158 | 2 | 159 | 9.04e-55 | 172 |
| Msa0991710 | MtrunA17_Chr7g0252811 | 53.571 | 140 | 65 | 0 | 13 | 152 | 36 | 175 | 8.34e-52 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991710 | AT5G62040.1 | 66.250 | 160 | 52 | 2 | 1 | 158 | 1 | 160 | 3.45e-74 | 222 |
| Msa0991710 | AT2G27550.1 | 68.387 | 155 | 47 | 2 | 6 | 158 | 7 | 161 | 1.59e-71 | 215 |
| Msa0991710 | AT5G03840.1 | 60.759 | 158 | 61 | 1 | 2 | 158 | 6 | 163 | 2.14e-70 | 212 |
| Msa0991710 | AT1G65480.1 | 64.706 | 153 | 54 | 0 | 6 | 158 | 7 | 159 | 1.80e-69 | 210 |
| Msa0991710 | AT1G65480.2 | 64.706 | 153 | 54 | 0 | 6 | 158 | 51 | 203 | 3.23e-69 | 211 |
| Msa0991710 | AT4G20370.1 | 58.824 | 153 | 63 | 0 | 6 | 158 | 7 | 159 | 2.30e-61 | 189 |
| Msa0991710 | AT1G18100.1 | 50.314 | 159 | 76 | 2 | 1 | 157 | 1 | 158 | 9.79e-52 | 165 |
Find 51 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCTAGTGATCCACATTTA+AGG | 0.192828 | 6_4:-57369408 | Msa0991710:CDS |
| ATTTACAATGTCTAGGCATT+TGG | 0.294305 | 6_4:-57370916 | None:intergenic |
| TGGATTCCAATCACTGGCTT+TGG | 0.338572 | 6_4:+57368817 | None:intergenic |
| GGTACCACAGATGTCTCTTT+TGG | 0.356770 | 6_4:-57369254 | Msa0991710:intron |
| TCACTAGGACTAGGAGCATC+TGG | 0.365823 | 6_4:+57369421 | None:intergenic |
| GGCTTGTTCATAACAATAGA+AGG | 0.369931 | 6_4:+57370780 | None:intergenic |
| CATGAGATCTGCTTATACTT+TGG | 0.378259 | 6_4:-57370733 | Msa0991710:intron |
| ACAAGATGAAGACATATCTA+TGG | 0.389834 | 6_4:+57368797 | None:intergenic |
| AACAAGCCAAGGGTTGATAT+TGG | 0.406612 | 6_4:-57370765 | Msa0991710:CDS |
| TCCTAGTGATCCACATTTAA+GGG | 0.415346 | 6_4:-57369407 | Msa0991710:CDS |
| TGCGATCACGATTGTTTACA+AGG | 0.418377 | 6_4:-57368219 | Msa0991710:CDS |
| CTTTCTGTAGGAAGAGTGAT+TGG | 0.436842 | 6_4:-57370888 | Msa0991710:CDS |
| GAGAATCCAAAGCCAGTGAT+TGG | 0.439509 | 6_4:-57368823 | Msa0991710:CDS |
| TTGAAGTAAACTGCAGCAAC+AGG | 0.458327 | 6_4:+57368682 | None:intergenic |
| ATGACCATTTGCAACTTGCT+TGG | 0.464272 | 6_4:+57370812 | None:intergenic |
| GTCACATTCATTCTTACACT+TGG | 0.469107 | 6_4:+57370843 | None:intergenic |
| AAGCGGTTTGAGGTTACGAT+TGG | 0.494428 | 6_4:-57368327 | Msa0991710:CDS |
| ACCATTTGCAACTTGCTTGG+TGG | 0.494743 | 6_4:+57370815 | None:intergenic |
| ATCACTCTTCCTACAGAAAG+TGG | 0.502508 | 6_4:+57370891 | None:intergenic |
| TTGAAATTGTCTCTAGAAGA+TGG | 0.510509 | 6_4:+57368742 | None:intergenic |
| TTCTCACAGGAGAATAACCT+TGG | 0.519597 | 6_4:-57368709 | Msa0991710:CDS |
| CTATTGTTATGAACAAGCCA+AGG | 0.525548 | 6_4:-57370776 | Msa0991710:CDS |
| TCCACCAAGCAAGTTGCAAA+TGG | 0.526204 | 6_4:-57370816 | Msa0991710:CDS |
| AGGGTTTGCGAAGCGGTTTG+AGG | 0.527761 | 6_4:-57368337 | Msa0991710:CDS |
| AGCGGTTTGAGGTTACGATT+GGG | 0.527803 | 6_4:-57368326 | Msa0991710:CDS |
| CATTGTGATTTACAATGTCT+AGG | 0.539949 | 6_4:-57370923 | None:intergenic |
| TCATCTTGTTCAAGCAGAGA+AGG | 0.540166 | 6_4:-57368783 | Msa0991710:CDS |
| TGAAATTGTCTCTAGAAGAT+GGG | 0.541509 | 6_4:+57368743 | None:intergenic |
| TTACGATTGGGACTGTATTG+TGG | 0.546096 | 6_4:-57368314 | Msa0991710:CDS |
| AAATGTGGATCACTAGGACT+AGG | 0.546629 | 6_4:+57369412 | None:intergenic |
| CACTAGGACTAGGAGCATCT+GGG | 0.555253 | 6_4:+57369422 | None:intergenic |
| AGGATGGTTACAGATATTCC+AGG | 0.555677 | 6_4:-57369275 | Msa0991710:CDS |
| AAAGAGACATCTGTGGTACC+TGG | 0.563172 | 6_4:+57369257 | None:intergenic |
| AAGCCAAGGGTTGATATTGG+CGG | 0.564130 | 6_4:-57370762 | Msa0991710:CDS |
| CAACACAAGGAGATTCTCAC+AGG | 0.564893 | 6_4:-57368722 | Msa0991710:CDS |
| TCACCGCCAATATCAACCCT+TGG | 0.569065 | 6_4:+57370759 | None:intergenic |
| TATCTATGGATTCCAATCAC+TGG | 0.569156 | 6_4:+57368811 | None:intergenic |
| TAAATTCGCGATTATAGTTG+CGG | 0.569642 | 6_4:+57368291 | None:intergenic |
| ATTTAAGGGAACATCTCCAC+TGG | 0.572031 | 6_4:-57369393 | Msa0991710:intron |
| CATTTGGAACCACTTTCTGT+AGG | 0.583166 | 6_4:-57370900 | Msa0991710:CDS |
| TATTGTTATGAACAAGCCAA+GGG | 0.586275 | 6_4:-57370775 | Msa0991710:CDS |
| CTAGAGACAATTTCAACACA+AGG | 0.589107 | 6_4:-57368735 | Msa0991710:CDS |
| TCCCTTAAATGTGGATCACT+AGG | 0.597152 | 6_4:+57369406 | None:intergenic |
| TATTCTTAGGGTTTGCGAAG+CGG | 0.604398 | 6_4:-57368344 | Msa0991710:intron |
| TGGAGATGTTCCCTTAAATG+TGG | 0.614063 | 6_4:+57369397 | None:intergenic |
| GAAATTGTCTCTAGAAGATG+GGG | 0.619592 | 6_4:+57368744 | None:intergenic |
| TGATGCAGGAAATGAGATTG+TGG | 0.645531 | 6_4:-57368851 | Msa0991710:intron |
| AAGGGTTGATATTGGCGGTG+AGG | 0.670278 | 6_4:-57370757 | Msa0991710:CDS |
| CTGCAGCAACAGGTAAACCA+AGG | 0.708296 | 6_4:+57368692 | None:intergenic |
| TAATATTAAGAATTGTGACG+TGG | 0.734510 | 6_4:-57368243 | Msa0991710:CDS |
| CTAACCAAAAGAGACATCTG+TGG | 0.754543 | 6_4:+57369250 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr6_4:57369410-57369429 | Msa0991710:CDS | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr6_4:57369410-57369429 | None:intergenic | 0.0% |
| !! | ATATAGAGAATAATTAATTA+AGG | + | chr6_4:57369925-57369944 | None:intergenic | 10.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr6_4:57369135-57369154 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr6_4:57369134-57369153 | None:intergenic | 15.0% |
| !!! | AATTTTGCAATAATTTTTTG+CGG | + | chr6_4:57368878-57368897 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr6_4:57368913-57368932 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr6_4:57369044-57369063 | Msa0991710:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr6_4:57369134-57369153 | Msa0991710:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr6_4:57369135-57369154 | Msa0991710:intron | 15.0% |
| !!! | ACCTTTTGTTATATTTTTTT+GGG | + | chr6_4:57369209-57369228 | None:intergenic | 15.0% |
| !!! | TACCTTTTGTTATATTTTTT+TGG | + | chr6_4:57369210-57369229 | None:intergenic | 15.0% |
| !! | AAAAAATATAACAAAAGGTA+AGG | - | chr6_4:57369210-57369229 | Msa0991710:intron | 15.0% |
| !! | ATGTAACTTAATTAAAAGAA+TGG | - | chr6_4:57370208-57370227 | Msa0991710:intron | 15.0% |
| !! | ATTAATAAAGGTTGTTAGTT+AGG | + | chr6_4:57368522-57368541 | None:intergenic | 20.0% |
| !! | GGAAATCAACATATTAATAA+AGG | + | chr6_4:57368534-57368553 | None:intergenic | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr6_4:57368783-57368802 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr6_4:57368784-57368803 | None:intergenic | 20.0% |
| !!! | TGTCAGAAAATTCTAAATTT+TGG | - | chr6_4:57368976-57368995 | Msa0991710:intron | 20.0% |
| !! | ACCCAAAAAAATATAACAAA+AGG | - | chr6_4:57369205-57369224 | Msa0991710:intron | 20.0% |
| !!! | ATTACGATTGTAACTTATTT+TGG | + | chr6_4:57369287-57369306 | None:intergenic | 20.0% |
| !!! | CTAACCAATGTTTTAAAAAT+CGG | + | chr6_4:57369369-57369388 | None:intergenic | 20.0% |
| !!! | ATTTTTAAAACATTGGTTAG+TGG | - | chr6_4:57369369-57369388 | Msa0991710:intron | 20.0% |
| !! | TATATATATATTCATGTCTC+AGG | + | chr6_4:57369401-57369420 | None:intergenic | 20.0% |
| !! | ATGATTAATATACCAAATGA+TGG | - | chr6_4:57369655-57369674 | Msa0991710:intron | 20.0% |
| !!! | TCTCTATATTTGTTAATCTA+AGG | - | chr6_4:57369936-57369955 | Msa0991710:intron | 20.0% |
| !! | TAATTTATTACATATGTGCA+TGG | - | chr6_4:57370057-57370076 | Msa0991710:intron | 20.0% |
| !! | AAGGTAATCAATGAAAAAAT+GGG | - | chr6_4:57370488-57370507 | Msa0991710:intron | 20.0% |
| !!! | TTAAAATTAGTTTACACCAA+CGG | + | chr6_4:57370521-57370540 | None:intergenic | 20.0% |
| !!! | TCAGCATAATATATTTTCTT+AGG | - | chr6_4:57370687-57370706 | Msa0991710:intron | 20.0% |
| !!! | CAGCATAATATATTTTCTTA+GGG | - | chr6_4:57370688-57370707 | Msa0991710:intron | 20.0% |
| !!! | TCATTTTTTTTCTCACTAGA+AGG | + | chr6_4:57368615-57368634 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr6_4:57368750-57368769 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr6_4:57369072-57369091 | Msa0991710:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr6_4:57369073-57369092 | Msa0991710:intron | 25.0% |
| ! | GCAAAGTTATAACTAAAAAG+TGG | + | chr6_4:57369525-57369544 | None:intergenic | 25.0% |
| !!! | AGTTTTATTATACAAACCAG+TGG | + | chr6_4:57369746-57369765 | None:intergenic | 25.0% |
| ! | ATTAAGGTTATATTGATCCT+AGG | + | chr6_4:57369909-57369928 | None:intergenic | 25.0% |
| ! | TTAAACAACTTGAGTTCAAT+TGG | - | chr6_4:57370003-57370022 | Msa0991710:intron | 25.0% |
| ! | TGAAAATGTTAAAATCCTCA+TGG | + | chr6_4:57370037-57370056 | None:intergenic | 25.0% |
| ! | TTACATGTATGGTTGTAAAA+AGG | + | chr6_4:57370173-57370192 | None:intergenic | 25.0% |
| ! | GAAGGTAATCAATGAAAAAA+TGG | - | chr6_4:57370487-57370506 | Msa0991710:intron | 25.0% |
| ! | ATAAAATGTTGGATTCTCAT+TGG | + | chr6_4:57370552-57370571 | None:intergenic | 25.0% |
| ! | GAACTCACATTATAAAATGT+TGG | + | chr6_4:57370563-57370582 | None:intergenic | 25.0% |
| ! | TTTATAATGTGAGTTCTCAT+TGG | - | chr6_4:57370567-57370586 | Msa0991710:intron | 25.0% |
| !! | GAAACTATATTTTACACCAA+CGG | - | chr6_4:57370600-57370619 | Msa0991710:intron | 25.0% |
| !! | CATTTTTGTGTCTATTCTTA+GGG | - | chr6_4:57370764-57370783 | Msa0991710:CDS | 25.0% |
| ! | TAATATTAAGAATTGTGACG+TGG | - | chr6_4:57370877-57370896 | Msa0991710:CDS | 25.0% |
| TATTGTTATGAACAAGCCAA+GGG | - | chr6_4:57368345-57368364 | Msa0991710:intron | 30.0% | |
| TACTTCGCTAATGTAACATA+TGG | + | chr6_4:57368473-57368492 | None:intergenic | 30.0% | |
| ! | TACATTAGCGAAGTATCAAT+CGG | - | chr6_4:57368478-57368497 | Msa0991710:intron | 30.0% |
| !!! | CCAAATCACGTTTTTTATCA+CGG | - | chr6_4:57368552-57368571 | Msa0991710:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr6_4:57369166-57369185 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr6_4:57369165-57369184 | None:intergenic | 30.0% |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr6_4:57368751-57368770 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr6_4:57369010-57369029 | None:intergenic | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr6_4:57369165-57369184 | Msa0991710:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr6_4:57369166-57369185 | Msa0991710:intron | 30.0% |
| !!! | GTAACTTATTTTGGTTGAAG+TGG | + | chr6_4:57369278-57369297 | None:intergenic | 30.0% |
| ATTGTTTGAACTAACTGGTT+CGG | - | chr6_4:57369342-57369361 | Msa0991710:intron | 30.0% | |
| CTAAAAGACACCTTCATAAA+AGG | - | chr6_4:57369544-57369563 | Msa0991710:intron | 30.0% | |
| GATCTACAAATTCCATCATT+TGG | + | chr6_4:57369670-57369689 | None:intergenic | 30.0% | |
| TTAAATCCTCAAGTTCTTAG+TGG | + | chr6_4:57369987-57370006 | None:intergenic | 30.0% | |
| TGTGATGCAATTTACATGTA+TGG | + | chr6_4:57370184-57370203 | None:intergenic | 30.0% | |
| ACAAGATGAAGACATATCTA+TGG | + | chr6_4:57370326-57370345 | None:intergenic | 30.0% | |
| ! | TGAAATTGTCTCTAGAAGAT+GGG | + | chr6_4:57370380-57370399 | None:intergenic | 30.0% |
| ! | TTGAAATTGTCTCTAGAAGA+TGG | + | chr6_4:57370381-57370400 | None:intergenic | 30.0% |
| TATCAATTTGTGAAGCTGAA+AGG | - | chr6_4:57370643-57370662 | Msa0991710:intron | 30.0% | |
| CCTAAGAATAGACACAAAAA+TGG | + | chr6_4:57370766-57370785 | None:intergenic | 30.0% | |
| !! | CCATTTTTGTGTCTATTCTT+AGG | - | chr6_4:57370763-57370782 | Msa0991710:CDS | 30.0% |
| TAAATTCGCGATTATAGTTG+CGG | + | chr6_4:57370832-57370851 | None:intergenic | 30.0% | |
| GTCACATTCATTCTTACACT+TGG | + | chr6_4:57368280-57368299 | None:intergenic | 35.0% | |
| ! | GGCTTGTTCATAACAATAGA+AGG | + | chr6_4:57368343-57368362 | None:intergenic | 35.0% |
| CTATTGTTATGAACAAGCCA+AGG | - | chr6_4:57368344-57368363 | Msa0991710:intron | 35.0% | |
| CATGAGATCTGCTTATACTT+TGG | - | chr6_4:57368387-57368406 | Msa0991710:intron | 35.0% | |
| CCGTGATAAAAAACGTGATT+TGG | + | chr6_4:57368555-57368574 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr6_4:57369150-57369169 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr6_4:57369150-57369169 | Msa0991710:intron | 35.0% | |
| GTTAGTTCAAACAATTACGC+AGG | + | chr6_4:57369337-57369356 | None:intergenic | 35.0% | |
| GCGTAATTGTTTGAACTAAC+TGG | - | chr6_4:57369337-57369356 | Msa0991710:intron | 35.0% | |
| !!! | CGGTCCGATTTTTAAAACAT+TGG | - | chr6_4:57369362-57369381 | Msa0991710:intron | 35.0% |
| TTGCTAAAAGACACCTTCAT+GGG | + | chr6_4:57369541-57369560 | None:intergenic | 35.0% | |
| AAAGTGGAAATCACAACTTG+AGG | + | chr6_4:57369509-57369528 | None:intergenic | 35.0% | |
| ! | CTAGAAGACACCTTTTATGA+AGG | + | chr6_4:57369557-57369576 | None:intergenic | 35.0% |
| TCCTAGTGATCCACATTTAA+GGG | - | chr6_4:57369713-57369732 | Msa0991710:intron | 35.0% | |
| TTTATTCCCTCTTACCAACT+TGG | - | chr6_4:57369807-57369826 | Msa0991710:intron | 35.0% | |
| !! | ATGATACCAAGTTGGTAAGA+GGG | + | chr6_4:57369816-57369835 | None:intergenic | 35.0% |
| ! | GCAAATTGATGATACCAAGT+TGG | + | chr6_4:57369824-57369843 | None:intergenic | 35.0% |
| ! | CTTTTACCACTAAGAACTTG+AGG | - | chr6_4:57369978-57369997 | Msa0991710:intron | 35.0% |
| CAATTGGAAAATCAACCATG+AGG | - | chr6_4:57370019-57370038 | Msa0991710:intron | 35.0% | |
| AAGGGAATTAACTTTGATGC+AGG | - | chr6_4:57370255-57370274 | Msa0991710:intron | 35.0% | |
| TATCTATGGATTCCAATCAC+TGG | + | chr6_4:57370312-57370331 | None:intergenic | 35.0% | |
| ! | GAAATTGTCTCTAGAAGATG+GGG | + | chr6_4:57370379-57370398 | None:intergenic | 35.0% |
| CTAGAGACAATTTCAACACA+AGG | - | chr6_4:57370385-57370404 | Msa0991710:intron | 35.0% | |
| GGGTTTGTCATTGTTGAATA+AGG | - | chr6_4:57370708-57370727 | Msa0991710:intron | 35.0% | |
| GAATAGACACAAAAATGGTG+TGG | + | chr6_4:57370761-57370780 | None:intergenic | 35.0% | |
| ! | CATTTGGAACCACTTTCTGT+AGG | - | chr6_4:57368220-57368239 | Msa0991710:CDS | 40.0% |
| ATCACTCTTCCTACAGAAAG+TGG | + | chr6_4:57368232-57368251 | None:intergenic | 40.0% | |
| CTTTCTGTAGGAAGAGTGAT+TGG | - | chr6_4:57368232-57368251 | Msa0991710:CDS | 40.0% | |
| ! | ATGACCATTTGCAACTTGCT+TGG | + | chr6_4:57368311-57368330 | None:intergenic | 40.0% |
| !! | AACAAGCCAAGGGTTGATAT+TGG | - | chr6_4:57368355-57368374 | Msa0991710:intron | 40.0% |
| ! | ATCAATCGGCTTTGACGATT+TGG | - | chr6_4:57368492-57368511 | Msa0991710:intron | 40.0% |
| CAAAAGGTAAGGATGAGAAC+CGG | - | chr6_4:57369221-57369240 | Msa0991710:intron | 40.0% | |
| ! | TGGTTGAAGTGGATTTAACC+AGG | + | chr6_4:57369267-57369286 | None:intergenic | 40.0% |
| CTTGCTAAAAGACACCTTCA+TGG | + | chr6_4:57369481-57369500 | None:intergenic | 40.0% | |
| GGAAATCACAACTTGAGGTA+GGG | + | chr6_4:57369504-57369523 | None:intergenic | 40.0% | |
| TGGAAATCACAACTTGAGGT+AGG | + | chr6_4:57369505-57369524 | None:intergenic | 40.0% | |
| AAATGTGGATCACTAGGACT+AGG | + | chr6_4:57369711-57369730 | None:intergenic | 40.0% | |
| GTCCTAGTGATCCACATTTA+AGG | - | chr6_4:57369712-57369731 | Msa0991710:intron | 40.0% | |
| TCCCTTAAATGTGGATCACT+AGG | + | chr6_4:57369717-57369736 | None:intergenic | 40.0% | |
| TGGAGATGTTCCCTTAAATG+TGG | + | chr6_4:57369726-57369745 | None:intergenic | 40.0% | |
| ATTTAAGGGAACATCTCCAC+TGG | - | chr6_4:57369727-57369746 | Msa0991710:intron | 40.0% | |
| !! | GATGATACCAAGTTGGTAAG+AGG | + | chr6_4:57369817-57369836 | None:intergenic | 40.0% |
| CTTGGTATCATCAATTTGCC+AGG | - | chr6_4:57369825-57369844 | Msa0991710:intron | 40.0% | |
| GTATCATCAATTTGCCAGGA+TGG | - | chr6_4:57369829-57369848 | Msa0991710:intron | 40.0% | |
| TGGAATATCTGTAACCATCC+TGG | + | chr6_4:57369846-57369865 | None:intergenic | 40.0% | |
| AGGATGGTTACAGATATTCC+AGG | - | chr6_4:57369845-57369864 | Msa0991710:intron | 40.0% | |
| CTAACCAAAAGAGACATCTG+TGG | + | chr6_4:57369873-57369892 | None:intergenic | 40.0% | |
| TTGATCCTAGGATAGAGAGA+GGG | + | chr6_4:57369897-57369916 | None:intergenic | 40.0% | |
| ATTGATCCTAGGATAGAGAG+AGG | + | chr6_4:57369898-57369917 | None:intergenic | 40.0% | |
| TGATGCAGGAAATGAGATTG+TGG | - | chr6_4:57370269-57370288 | Msa0991710:intron | 40.0% | |
| TCATCTTGTTCAAGCAGAGA+AGG | - | chr6_4:57370337-57370356 | Msa0991710:intron | 40.0% | |
| TTCTCACAGGAGAATAACCT+TGG | - | chr6_4:57370411-57370430 | Msa0991710:intron | 40.0% | |
| TTGAAGTAAACTGCAGCAAC+AGG | + | chr6_4:57370441-57370460 | None:intergenic | 40.0% | |
| TGTGAGTTCTCATTGGATGT+CGG | - | chr6_4:57370574-57370593 | Msa0991710:intron | 40.0% | |
| GTTTAATAGAGATGCACCGT+TGG | + | chr6_4:57370619-57370638 | None:intergenic | 40.0% | |
| TTTGTGAAGCTGAAAGGATG+CGG | - | chr6_4:57370649-57370668 | Msa0991710:intron | 40.0% | |
| TATTCTTAGGGTTTGCGAAG+CGG | - | chr6_4:57370776-57370795 | Msa0991710:CDS | 40.0% | |
| TTACGATTGGGACTGTATTG+TGG | - | chr6_4:57370806-57370825 | Msa0991710:CDS | 40.0% | |
| TGCGATCACGATTGTTTACA+AGG | - | chr6_4:57370901-57370920 | Msa0991710:CDS | 40.0% | |
| TCCACCAAGCAAGTTGCAAA+TGG | - | chr6_4:57368304-57368323 | Msa0991710:CDS | 45.0% | |
| ! | ACCATTTGCAACTTGCTTGG+TGG | + | chr6_4:57368308-57368327 | None:intergenic | 45.0% |
| !! | AAGCCAAGGGTTGATATTGG+CGG | - | chr6_4:57368358-57368377 | Msa0991710:intron | 45.0% |
| ! | TAAACCGCAGTTGGTTCAAC+CGG | + | chr6_4:57369243-57369262 | None:intergenic | 45.0% |
| TAACCAGGTTAAACCGCAGT+TGG | + | chr6_4:57369252-57369271 | None:intergenic | 45.0% | |
| GCAGGAAGCAGTAAGTTCAT+TGG | + | chr6_4:57369319-57369338 | None:intergenic | 45.0% | |
| CTAAAAGACACCTTCATGGG+TGG | + | chr6_4:57369477-57369496 | None:intergenic | 45.0% | |
| AAAGAGACATCTGTGGTACC+TGG | + | chr6_4:57369866-57369885 | None:intergenic | 45.0% | |
| ! | GGTACCACAGATGTCTCTTT+TGG | - | chr6_4:57369866-57369885 | Msa0991710:intron | 45.0% |
| TTAGTCCCTCTCTCTATCCT+AGG | - | chr6_4:57369889-57369908 | Msa0991710:intron | 45.0% | |
| GAGAATCCAAAGCCAGTGAT+TGG | - | chr6_4:57370297-57370316 | Msa0991710:intron | 45.0% | |
| !! | TGGATTCCAATCACTGGCTT+TGG | + | chr6_4:57370306-57370325 | None:intergenic | 45.0% |
| CAACACAAGGAGATTCTCAC+AGG | - | chr6_4:57370398-57370417 | Msa0991710:intron | 45.0% | |
| GAGAAACTGCAGCAAGAAGA+AGG | - | chr6_4:57370469-57370488 | Msa0991710:intron | 45.0% | |
| AAAAATGGGACATGCACCGT+TGG | - | chr6_4:57370502-57370521 | Msa0991710:intron | 45.0% | |
| ! | AAGCGGTTTGAGGTTACGAT+TGG | - | chr6_4:57370793-57370812 | Msa0991710:CDS | 45.0% |
| ! | AGCGGTTTGAGGTTACGATT+GGG | - | chr6_4:57370794-57370813 | Msa0991710:CDS | 45.0% |
| !!! | ATTTTAAAAGTAAAAAAAAT+AGG | - | chr6_4:57368646-57368665 | Msa0991710:intron | 5.0% |
| !!! | TTTTAAAAGTAAAAAAAATA+GGG | - | chr6_4:57368647-57368666 | Msa0991710:intron | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr6_4:57369105-57369124 | Msa0991710:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr6_4:57369106-57369125 | Msa0991710:intron | 5.0% |
| !!! | ATAATTTAATTTTTTAACAA+AGG | - | chr6_4:57370236-57370255 | Msa0991710:intron | 5.0% |
| !!! | TAATTTAATTTTTTAACAAA+GGG | - | chr6_4:57370237-57370256 | Msa0991710:intron | 5.0% |
| TCACCGCCAATATCAACCCT+TGG | + | chr6_4:57368364-57368383 | None:intergenic | 50.0% | |
| !! | AAGGGTTGATATTGGCGGTG+AGG | - | chr6_4:57368363-57368382 | Msa0991710:intron | 50.0% |
| AGAACCGGTTGAACCAACTG+CGG | - | chr6_4:57369236-57369255 | Msa0991710:intron | 50.0% | |
| GAACCAACTGCGGTTTAACC+TGG | - | chr6_4:57369246-57369265 | Msa0991710:intron | 50.0% | |
| TTGCTAGAAGCCACCCATGA+AGG | - | chr6_4:57369464-57369483 | Msa0991710:intron | 50.0% | |
| !! | CACTAGGACTAGGAGCATCT+GGG | + | chr6_4:57369701-57369720 | None:intergenic | 50.0% |
| !! | TCACTAGGACTAGGAGCATC+TGG | + | chr6_4:57369702-57369721 | None:intergenic | 50.0% |
| CTGCAGCAACAGGTAAACCA+AGG | + | chr6_4:57370431-57370450 | None:intergenic | 50.0% | |
| AGGGTTTGCGAAGCGGTTTG+AGG | - | chr6_4:57370783-57370802 | Msa0991710:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 57368211 | 57370931 | 57368211 | ID=Msa0991710;Name=Msa0991710 |
| chr6_4 | mRNA | 57368211 | 57370931 | 57368211 | ID=Msa0991710-mRNA-1;Parent=Msa0991710;Name=Msa0991710-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|0.8|0.75|0.6|5|0|206 |
| chr6_4 | exon | 57370734 | 57370931 | 57370734 | ID=Msa0991710-mRNA-1:exon:11480;Parent=Msa0991710-mRNA-1 |
| chr6_4 | exon | 57369394 | 57369455 | 57369394 | ID=Msa0991710-mRNA-1:exon:11479;Parent=Msa0991710-mRNA-1 |
| chr6_4 | exon | 57369255 | 57369295 | 57369255 | ID=Msa0991710-mRNA-1:exon:11478;Parent=Msa0991710-mRNA-1 |
| chr6_4 | exon | 57368693 | 57368865 | 57368693 | ID=Msa0991710-mRNA-1:exon:11477;Parent=Msa0991710-mRNA-1 |
| chr6_4 | exon | 57368211 | 57368357 | 57368211 | ID=Msa0991710-mRNA-1:exon:11476;Parent=Msa0991710-mRNA-1 |
| chr6_4 | CDS | 57370734 | 57370931 | 57370734 | ID=Msa0991710-mRNA-1:cds;Parent=Msa0991710-mRNA-1 |
| chr6_4 | CDS | 57369394 | 57369455 | 57369394 | ID=Msa0991710-mRNA-1:cds;Parent=Msa0991710-mRNA-1 |
| chr6_4 | CDS | 57369255 | 57369295 | 57369255 | ID=Msa0991710-mRNA-1:cds;Parent=Msa0991710-mRNA-1 |
| chr6_4 | CDS | 57368693 | 57368865 | 57368693 | ID=Msa0991710-mRNA-1:cds;Parent=Msa0991710-mRNA-1 |
| chr6_4 | CDS | 57368211 | 57368357 | 57368211 | ID=Msa0991710-mRNA-1:cds;Parent=Msa0991710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
