AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1181090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1181090 MtrunA17_Chr8g0339761 93.287 581 36 3 1 579 1 580 0.0 1054
Msa1181090 MtrunA17_Chr5g0428711 47.449 196 100 2 376 570 731 924 9.33e-52 191
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1181090 AT4G27860.2 48.469 196 88 4 378 563 396 588 4.87e-49 180
Msa1181090 AT4G27860.1 48.469 196 88 4 378 563 411 603 5.81e-49 180
Msa1181090 AT4G27860.3 48.469 196 88 4 378 563 421 613 9.82e-49 179
Msa1181090 AT4G27870.1 43.254 252 120 5 330 561 484 732 1.62e-47 177
Msa1181090 AT4G27870.2 43.254 252 120 5 330 561 504 752 1.80e-47 177
Msa1181090 AT4G27860.4 43.379 219 88 5 378 563 396 611 4.43e-44 166
Msa1181090 AT5G24290.2 42.473 186 97 2 378 559 328 507 4.60e-40 153
Msa1181090 AT5G24290.1 42.473 186 97 2 378 559 344 523 5.30e-40 154

Find 94 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATCAATATCCTCATTT+TGG 0.149878 8_1:+15396416 None:intergenic
AAAACAAAGCAACCCGAAAA+TGG 0.274129 8_1:-15395166 Msa1181090:CDS
CAGTGATTTCAGGATTTCTT+TGG 0.275317 8_1:+15395437 None:intergenic
TGGATACAAACATTACAATT+AGG 0.279341 8_1:+15396217 None:intergenic
TGGAGTGATTGGGGTGTAAT+AGG 0.283592 8_1:-15395211 Msa1181090:CDS
AAAGTTTGTTCAGTGATTTC+AGG 0.283616 8_1:+15395427 None:intergenic
AATAGTGATTGGAAAGTTAT+AGG 0.292428 8_1:-15395133 Msa1181090:CDS
TTTATCTCCACTTCAAATTT+CGG 0.295346 8_1:+15396463 None:intergenic
TTGCAGAATCAACCCAGATT+TGG 0.318544 8_1:-15393763 Msa1181090:CDS
TTATTAATATGATCCAAATC+TGG 0.328310 8_1:+15393750 None:intergenic
GATGAGCATCTTATTGTATC+AGG 0.344877 8_1:+15396151 None:intergenic
TCCAATGGCTTGTTACTTGC+TGG 0.347085 8_1:+15394736 None:intergenic
GTCTCATAAAATTGTGAAAC+AGG 0.347154 8_1:+15393608 None:intergenic
AGTGGTGTTCCTAAAGTTAC+AGG 0.362601 8_1:+15394784 None:intergenic
TTGTTACTTGCTGGTGCAGC+TGG 0.369987 8_1:+15394745 None:intergenic
CTGGCTATTGCAAACTTGAT+TGG 0.370075 8_1:-15394426 Msa1181090:CDS
ATCCACCACTTCTTCTGTGT+TGG 0.375790 8_1:+15394146 None:intergenic
ATAGTTCCACCTGTAACTTT+AGG 0.377093 8_1:-15394793 Msa1181090:CDS
TGCAGTGAATATTGTTGCTC+TGG 0.383118 8_1:-15394445 Msa1181090:intron
CTAATACCACCAGTTGTATA+CGG 0.387447 8_1:-15394042 Msa1181090:CDS
GATTGGAAAGTTATAGGTTC+TGG 0.390582 8_1:-15395127 Msa1181090:CDS
TTCAAGCTAGCAGCAGTTGC+AGG 0.392812 8_1:-15393988 Msa1181090:CDS
AAATATGTTAAGTAACTGTT+TGG 0.395633 8_1:+15393910 None:intergenic
CAAGAAGCTGATTCAATACT+TGG 0.397976 8_1:-15395388 Msa1181090:CDS
ATTGTAGTAGATAAAGAAAA+TGG 0.403796 8_1:-15396307 Msa1181090:CDS
CTTTGTCTTGAACAGGTAGC+TGG 0.413242 8_1:-15395956 Msa1181090:intron
CAATAAACAGTCAGACTTTG+TGG 0.435540 8_1:-15395059 Msa1181090:CDS
ACAGTGCTTTCTTACTTAGC+TGG 0.439244 8_1:-15393847 Msa1181090:CDS
TTCAGTTTCCTCATTCCAAT+AGG 0.442324 8_1:-15396124 Msa1181090:intron
ATTGTATCAGGTTGTTGCAC+AGG 0.445546 8_1:+15396163 None:intergenic
TCTCTATTAGATACCAATCC+AGG 0.445716 8_1:+15395927 None:intergenic
GATCTACCGAAAATAGTGAT+TGG 0.447424 8_1:-15395144 Msa1181090:CDS
TACTGCTGCTGCTACTATGC+TGG 0.455808 8_1:+15397158 None:intergenic
AAGAAACTCATTGAAAAGCT+TGG 0.456552 8_1:-15393814 Msa1181090:CDS
GAAGAATGAAATTCTTCCTC+TGG 0.461453 8_1:+15394103 None:intergenic
TTGTAATGTTTGTATCCAAA+AGG 0.462711 8_1:-15396212 Msa1181090:CDS
TAGCTGGTTATTCCCTGGAT+TGG 0.474620 8_1:-15395940 Msa1181090:CDS
AATGTGAAGCCGTATACAAC+TGG 0.482570 8_1:+15394033 None:intergenic
ACAGGTAGCTGGTTATTCCC+TGG 0.484078 8_1:-15395945 Msa1181090:intron
AAAGCTTGGATGGTTTGAAC+CGG 0.486009 8_1:-15393800 Msa1181090:CDS
AATAATTACATAGAAGCAAA+AGG 0.492762 8_1:-15397121 Msa1181090:intron
GATGGAGAATTAAATGATCA+AGG 0.498438 8_1:-15395906 Msa1181090:intron
TCTCAGATTCAATGAAGTCT+AGG 0.499179 8_1:+15396491 None:intergenic
AACTCATTGAAAAGCTTGGA+TGG 0.503586 8_1:-15393810 Msa1181090:CDS
CACATCTTCAATGATTTGCA+TGG 0.511729 8_1:+15395285 None:intergenic
TATTAATATGATCCAAATCT+GGG 0.514241 8_1:+15393751 None:intergenic
GAAGTAGAATCCTCAGGAAG+AGG 0.514514 8_1:+15396364 None:intergenic
TATAACTCACACTGTGACCA+AGG 0.515850 8_1:+15394391 None:intergenic
CAGTAGAATCCATGTGTTGG+TGG 0.518221 8_1:+15396241 None:intergenic
GCTATTGCAAACTTGATTGG+TGG 0.525773 8_1:-15394423 Msa1181090:CDS
AAGTTATTAATGTAAATCAA+TGG 0.528959 8_1:-15397240 Msa1181090:CDS
ATTCCGTGAGAACGATGAAA+AGG 0.537822 8_1:-15394013 Msa1181090:CDS
ACTAAAATTGTAGATGACTC+AGG 0.540600 8_1:-15395316 Msa1181090:CDS
CATGCAAATCATTGAAGATG+TGG 0.543711 8_1:-15395284 Msa1181090:CDS
ATCAAAGAAGTAGAATCCTC+AGG 0.544680 8_1:+15396358 None:intergenic
GACAAAACCGAAATTTGAAG+TGG 0.545708 8_1:-15396470 Msa1181090:CDS
TTCTGATCCTCCTCTTCCTG+AGG 0.546296 8_1:-15396374 Msa1181090:CDS
GGAAGAGGAGGATCAGAAGC+AGG 0.547406 8_1:+15396379 None:intergenic
CTGAAAAGTATTGTGTATGG+TGG 0.548477 8_1:-15394709 Msa1181090:CDS
ATAAACATGAACAAGAAGAA+AGG 0.549764 8_1:+15393689 None:intergenic
TGAAATGATCATCCAAAATG+AGG 0.550471 8_1:-15396428 Msa1181090:CDS
TTCAGGTTGTTTGGACAAAG+TGG 0.553634 8_1:+15395096 None:intergenic
TTGAAGTGGAGATAAAAGAA+AGG 0.559509 8_1:-15396456 Msa1181090:CDS
CATAAAATTGTGAAACAGGA+AGG 0.564450 8_1:+15393612 None:intergenic
TGCAAGGAGAAACTTGATGC+CGG 0.565108 8_1:+15393781 None:intergenic
ATTCTGAAAAGTATTGTGTA+TGG 0.572009 8_1:-15394712 Msa1181090:CDS
GATCAATACAATGAAGTGCT+AGG 0.572816 8_1:-15394126 Msa1181090:CDS
ATGGACTGTTGAATTTGTTG+TGG 0.573161 8_1:-15393726 Msa1181090:three_prime_UTR
TGTTAAACAGGATCTGCTGA+GGG 0.576528 8_1:-15394817 Msa1181090:intron
GTCGAGGGATCATCGTCCAC+AGG 0.585440 8_1:-15395028 Msa1181090:intron
GTAGAATCCTCAGGAAGAGG+AGG 0.587376 8_1:+15396367 None:intergenic
TTTGAGAAACCACCAACACA+TGG 0.588713 8_1:-15396250 Msa1181090:CDS
AAGATCCAACACAGAAGAAG+TGG 0.588966 8_1:-15394151 Msa1181090:CDS
GTCATTGTTAGACCTCAAAA+CGG 0.594790 8_1:-15395262 Msa1181090:CDS
TTGTTAAACAGGATCTGCTG+AGG 0.598859 8_1:-15394818 Msa1181090:intron
TTTGTGGAAGTTAAAGTCGA+GGG 0.600800 8_1:-15395043 Msa1181090:CDS
ATCCAACACAGAAGAAGTGG+TGG 0.603295 8_1:-15394148 Msa1181090:CDS
GGATTGGTATCTAATAGAGA+TGG 0.603899 8_1:-15395924 Msa1181090:CDS
CTCTATTAGATACCAATCCA+GGG 0.606380 8_1:+15395928 None:intergenic
ACCAGCAAGTAACAAGCCAT+TGG 0.606425 8_1:-15394737 Msa1181090:CDS
GTGAATCAATCTGTAACAAG+AGG 0.607829 8_1:-15395352 Msa1181090:CDS
TTTGGATCATATTAATAACA+TGG 0.613984 8_1:-15393745 Msa1181090:exon
AAATCTGGGTTGATTCTGCA+AGG 0.616830 8_1:+15393765 None:intergenic
GGACAGTAGAATCCATGTGT+TGG 0.619611 8_1:+15396238 None:intergenic
CTTTGTGGAAGTTAAAGTCG+AGG 0.620583 8_1:-15395044 Msa1181090:CDS
TTCAATACTTGGTCAATCTG+AGG 0.630325 8_1:-15395377 Msa1181090:CDS
ATAACTCACACTGTGACCAA+GGG 0.650029 8_1:+15394392 None:intergenic
GGATTACTATGAGTAAGAAG+TGG 0.657845 8_1:+15394766 None:intergenic
AATAGGTGGTACTAGTTCCG+AGG 0.663470 8_1:-15395194 Msa1181090:CDS
GGTGTTCCTAAAGTTACAGG+TGG 0.673280 8_1:+15394787 None:intergenic
GTGAAGCCGTATACAACTGG+TGG 0.674718 8_1:+15394036 None:intergenic
ACAATGAAGTGCTAGGCCAG+AGG 0.682248 8_1:-15394119 Msa1181090:CDS
AGTGATTGGGGTGTAATAGG+TGG 0.713833 8_1:-15395208 Msa1181090:CDS
AGCTAAGTAAGAAAGCACTG+TGG 0.821689 8_1:+15393849 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATATAAGTCTATTT+AGG + chr8_1:15394262-15394281 None:intergenic 10.0%
!!! TATTAATTTTATGTTATCAA+AGG - chr8_1:15394273-15394292 Msa1181090:intron 10.0%
!! AAGTTATTAATGTAAATCAA+TGG - chr8_1:15393553-15393572 Msa1181090:three_prime_UTR 15.0%
!!! TTTTATTAGTAAATAAGAGT+TGG - chr8_1:15393959-15393978 Msa1181090:CDS 15.0%
!! TTAACAAAATACTTTCTAAT+CGG + chr8_1:15393991-15394010 None:intergenic 15.0%
!! TAGTGATTTATTAAATGAAT+CGG + chr8_1:15395111-15395130 None:intergenic 15.0%
!! TTAGTTTATGATATAAATAG+TGG - chr8_1:15395174-15395193 Msa1181090:CDS 15.0%
!!! ATATAAATAGTGGATTATTA+CGG - chr8_1:15395184-15395203 Msa1181090:CDS 15.0%
!!! TAACAAAAAAGAAACATTTT+TGG - chr8_1:15395562-15395581 Msa1181090:intron 15.0%
!!! ATCACTTGATAATATTTTTA+AGG - chr8_1:15396240-15396259 Msa1181090:CDS 15.0%
!!! ATCTTATCATTCATTATTTT+TGG - chr8_1:15396727-15396746 Msa1181090:intron 15.0%
!!! TTTATCTTTACATTTTGTTT+TGG - chr8_1:15397122-15397141 Msa1181090:CDS 15.0%
!!! AATTTCAATTTTTGTTAACT+AGG - chr8_1:15397150-15397169 Msa1181090:CDS 15.0%
!!! ATTTCAATTTTTGTTAACTA+GGG - chr8_1:15397151-15397170 Msa1181090:CDS 15.0%
!! AATAATTACATAGAAGCAAA+AGG - chr8_1:15393672-15393691 Msa1181090:three_prime_UTR 20.0%
!! ATGAAAAAAAATCTCTTCAT+AGG - chr8_1:15393734-15393753 Msa1181090:exon 20.0%
!! TATTAAATGATTATCGATGT+CGG - chr8_1:15394143-15394162 Msa1181090:CDS 20.0%
!! TCATATTACAAAATCAAAGA+TGG - chr8_1:15394233-15394252 Msa1181090:intron 20.0%
!!! TAATTTTATGTTATCAAAGG+TGG - chr8_1:15394276-15394295 Msa1181090:intron 20.0%
!! ATTGTAGTAGATAAAGAAAA+TGG - chr8_1:15394486-15394505 Msa1181090:intron 20.0%
!!! AGAAAGACAAGAATTTTATT+TGG - chr8_1:15394512-15394531 Msa1181090:intron 20.0%
!!! ACAAGAATTTTATTTGGAAA+AGG - chr8_1:15394518-15394537 Msa1181090:intron 20.0%
!!! AAACTAAAAAAAGTACCTAT+TGG + chr8_1:15394687-15394706 None:intergenic 20.0%
!! TTAAAAACTAGACTGAATAT+TGG - chr8_1:15394725-15394744 Msa1181090:CDS 20.0%
!!! TTGTATTAAGTTTTTTATCG+TGG + chr8_1:15395022-15395041 None:intergenic 20.0%
!! AGTGATTTATTAAATGAATC+GGG + chr8_1:15395110-15395129 None:intergenic 20.0%
!! ATTTAATAAATCACTACCTA+AGG - chr8_1:15395115-15395134 Msa1181090:CDS 20.0%
!!! TATAAATAGTGGATTATTAC+GGG - chr8_1:15395185-15395204 Msa1181090:CDS 20.0%
!!! TCAATCTAATTTTGTTAAAC+AGG - chr8_1:15395964-15395983 Msa1181090:intron 20.0%
!!! TAAATTTAAAGTCTTACATG+TGG + chr8_1:15396169-15396188 None:intergenic 20.0%
!!! ATTTAGTTAAGTGAAAGTAT+TGG + chr8_1:15396564-15396583 None:intergenic 20.0%
!! AAATATGTTAAGTAACTGTT+TGG + chr8_1:15396886-15396905 None:intergenic 20.0%
!! TATTAATATGATCCAAATCT+GGG + chr8_1:15397045-15397064 None:intergenic 20.0%
!! TTATTAATATGATCCAAATC+TGG + chr8_1:15397046-15397065 None:intergenic 20.0%
!! TTTGGATCATATTAATAACA+TGG - chr8_1:15397048-15397067 Msa1181090:intron 20.0%
! GAACATAAATGCATAATTCT+AGG + chr8_1:15393800-15393819 None:intergenic 25.0%
! ATTTATGTTCATGTCAACTA+AGG - chr8_1:15393810-15393829 Msa1181090:CDS 25.0%
! TTTATGTTCATGTCAACTAA+GGG - chr8_1:15393811-15393830 Msa1181090:CDS 25.0%
! TATTATTGATGCATTTGTCT+CGG + chr8_1:15393888-15393907 None:intergenic 25.0%
!!! AGAAAGTATTTTGTTAACGA+TGG - chr8_1:15393994-15394013 Msa1181090:CDS 25.0%
!!! GAAAGTATTTTGTTAACGAT+GGG - chr8_1:15393995-15394014 Msa1181090:CDS 25.0%
! TATTACAAAATCAAAGATGG+AGG - chr8_1:15394236-15394255 Msa1181090:intron 25.0%
! TTTATCTCCACTTCAAATTT+CGG + chr8_1:15394333-15394352 None:intergenic 25.0%
!! TTTCATCAATATCCTCATTT+TGG + chr8_1:15394380-15394399 None:intergenic 25.0%
! TGGATACAAACATTACAATT+AGG + chr8_1:15394579-15394598 None:intergenic 25.0%
! TTGTAATGTTTGTATCCAAA+AGG - chr8_1:15394581-15394600 Msa1181090:intron 25.0%
!!! GTATTTTGTTTATCGAATCA+TGG - chr8_1:15394959-15394978 Msa1181090:intron 25.0%
! AATGAATCAAAATCTCATCA+TGG - chr8_1:15395040-15395059 Msa1181090:CDS 25.0%
!!! ATAAATAGTGGATTATTACG+GGG - chr8_1:15395186-15395205 Msa1181090:CDS 25.0%
!!! TACAATTTTAGTGACTGTTT+TGG + chr8_1:15395469-15395488 None:intergenic 25.0%
!! AACTTTCCAATCACTATTTT+CGG + chr8_1:15395658-15395677 None:intergenic 25.0%
! AATAGTGATTGGAAAGTTAT+AGG - chr8_1:15395660-15395679 Msa1181090:intron 25.0%
!!! AAAGTTATTTTCAGGTTGTT+TGG + chr8_1:15395709-15395728 None:intergenic 25.0%
!!! TTGTCTTCAAAGTTATTTTC+AGG + chr8_1:15395717-15395736 None:intergenic 25.0%
! TCATTTATCAAGAGTTAATC+AGG + chr8_1:15395909-15395928 None:intergenic 25.0%
! TAACTCTTGATAAATGACTT+TGG - chr8_1:15395912-15395931 Msa1181090:CDS 25.0%
!!! ATTCTGAAAAGTATTGTGTA+TGG - chr8_1:15396081-15396100 Msa1181090:intron 25.0%
! GTGATGCAACAAAAATATTT+AGG + chr8_1:15396225-15396244 None:intergenic 25.0%
!! GAATTGATGCATCAATTTTT+GGG - chr8_1:15396288-15396307 Msa1181090:CDS 25.0%
! TATGTATATATTTGCAGCTT+AGG - chr8_1:15396596-15396615 Msa1181090:intron 25.0%
! ATGTATATATTTGCAGCTTA+GGG - chr8_1:15396597-15396616 Msa1181090:intron 25.0%
! ATAAACATGAACAAGAAGAA+AGG + chr8_1:15397107-15397126 None:intergenic 25.0%
! GTAATTATTTTCTGAACTGC+TGG + chr8_1:15393661-15393680 None:intergenic 30.0%
TTATGTTCATGTCAACTAAG+GGG - chr8_1:15393812-15393831 Msa1181090:CDS 30.0%
! TATAATCATAAGTGTCGTGT+CGG + chr8_1:15394107-15394126 None:intergenic 30.0%
! TTTTATGTTATCAAAGGTGG+AGG - chr8_1:15394279-15394298 Msa1181090:intron 30.0%
TTGAAGTGGAGATAAAAGAA+AGG - chr8_1:15394337-15394356 Msa1181090:intron 30.0%
TGAAATGATCATCCAAAATG+AGG - chr8_1:15394365-15394384 Msa1181090:intron 30.0%
! TCTTTTGAATGTACACCTTT+TGG + chr8_1:15394599-15394618 None:intergenic 30.0%
!! AAAAAGTACCTATTGGAATG+AGG + chr8_1:15394680-15394699 None:intergenic 30.0%
AAACTAGACTGAATATTGGA+CGG - chr8_1:15394729-15394748 Msa1181090:CDS 30.0%
AATTTCTCTTTGTCTTGAAC+AGG - chr8_1:15394830-15394849 Msa1181090:intron 30.0%
GATGGAGAATTAAATGATCA+AGG - chr8_1:15394887-15394906 Msa1181090:intron 30.0%
GTTTATCGAATCATGGTTAT+CGG - chr8_1:15394966-15394985 Msa1181090:intron 30.0%
GATTCACGATTCTCAAAAAT+AGG - chr8_1:15395321-15395340 Msa1181090:CDS 30.0%
! AAAGTTTGTTCAGTGATTTC+AGG + chr8_1:15395369-15395388 None:intergenic 30.0%
ACTAAAATTGTAGATGACTC+AGG - chr8_1:15395477-15395496 Msa1181090:intron 30.0%
!!! AGAAACATTTTTGGAGTGAT+TGG - chr8_1:15395571-15395590 Msa1181090:intron 30.0%
!!! GAAACATTTTTGGAGTGATT+GGG - chr8_1:15395572-15395591 Msa1181090:intron 30.0%
!!! AAACATTTTTGGAGTGATTG+GGG - chr8_1:15395573-15395592 Msa1181090:intron 30.0%
! ATTTTCGGTAGATCCATTTT+CGG + chr8_1:15395643-15395662 None:intergenic 30.0%
TAAGCGTCATTTATCGTTTA+AGG - chr8_1:15395816-15395835 Msa1181090:intron 30.0%
! ATACTTTTCAGAATCTCCAA+TGG + chr8_1:15396075-15396094 None:intergenic 30.0%
! AAGGTTGTTTCCTACAAAAA+AGG - chr8_1:15396259-15396278 Msa1181090:CDS 30.0%
TTTCCTACAAAAAAGGAAAG+AGG - chr8_1:15396266-15396285 Msa1181090:CDS 30.0%
!!! ATTCCTCTTTCCTTTTTTGT+AGG + chr8_1:15396272-15396291 None:intergenic 30.0%
! GGAATTGATGCATCAATTTT+TGG - chr8_1:15396287-15396306 Msa1181090:CDS 30.0%
TAGTCTCATTAGATGAGATA+TGG + chr8_1:15396507-15396526 None:intergenic 30.0%
AAGAAACTCATTGAAAAGCT+TGG - chr8_1:15396979-15396998 Msa1181090:intron 30.0%
CATAAAATTGTGAAACAGGA+AGG + chr8_1:15397184-15397203 None:intergenic 30.0%
GTCTCATAAAATTGTGAAAC+AGG + chr8_1:15397188-15397207 None:intergenic 30.0%
TGAACGTGTGTCTTAAAAAC+CGG + chr8_1:15393928-15393947 None:intergenic 35.0%
GCACATACACTTCTTAGATT+AGG - chr8_1:15394039-15394058 Msa1181090:CDS 35.0%
!! TTCTTAGATTAGGAGTGTCT+AGG - chr8_1:15394049-15394068 Msa1181090:CDS 35.0%
TCTCAGATTCAATGAAGTCT+AGG + chr8_1:15394305-15394324 None:intergenic 35.0%
GACAAAACCGAAATTTGAAG+TGG - chr8_1:15394323-15394342 Msa1181090:intron 35.0%
ATCAAAGAAGTAGAATCCTC+AGG + chr8_1:15394438-15394457 None:intergenic 35.0%
GATGAGCATCTTATTGTATC+AGG + chr8_1:15394645-15394664 None:intergenic 35.0%
TTCAGTTTCCTCATTCCAAT+AGG - chr8_1:15394669-15394688 Msa1181090:CDS 35.0%
CTCTATTAGATACCAATCCA+GGG + chr8_1:15394868-15394887 None:intergenic 35.0%
TCTCTATTAGATACCAATCC+AGG + chr8_1:15394869-15394888 None:intergenic 35.0%
! GGATTGGTATCTAATAGAGA+TGG - chr8_1:15394869-15394888 Msa1181090:intron 35.0%
! ACTATATTATGCTTGGCCTT+AGG + chr8_1:15395134-15395153 None:intergenic 35.0%
GTAGACGACTATATTATGCT+TGG + chr8_1:15395141-15395160 None:intergenic 35.0%
CAGTGATTTCAGGATTTCTT+TGG + chr8_1:15395359-15395378 None:intergenic 35.0%
! CAAGAAGCTGATTCAATACT+TGG - chr8_1:15395405-15395424 Msa1181090:CDS 35.0%
TTCAATACTTGGTCAATCTG+AGG - chr8_1:15395416-15395435 Msa1181090:CDS 35.0%
GTGAATCAATCTGTAACAAG+AGG - chr8_1:15395441-15395460 Msa1181090:CDS 35.0%
! CACATCTTCAATGATTTGCA+TGG + chr8_1:15395511-15395530 None:intergenic 35.0%
CATGCAAATCATTGAAGATG+TGG - chr8_1:15395509-15395528 Msa1181090:intron 35.0%
GTCATTGTTAGACCTCAAAA+CGG - chr8_1:15395531-15395550 Msa1181090:intron 35.0%
!!! TTGCTTTGTTTTTGGAACCT+CGG + chr8_1:15395619-15395638 None:intergenic 35.0%
!!! TTTTCGGGTTGCTTTGTTTT+TGG + chr8_1:15395627-15395646 None:intergenic 35.0%
AAAACAAAGCAACCCGAAAA+TGG - chr8_1:15395627-15395646 Msa1181090:intron 35.0%
! TTTTCGGTAGATCCATTTTC+GGG + chr8_1:15395642-15395661 None:intergenic 35.0%
GATCTACCGAAAATAGTGAT+TGG - chr8_1:15395649-15395668 Msa1181090:intron 35.0%
GATTGGAAAGTTATAGGTTC+TGG - chr8_1:15395666-15395685 Msa1181090:intron 35.0%
CAATAAACAGTCAGACTTTG+TGG - chr8_1:15395734-15395753 Msa1181090:intron 35.0%
TTTGTGGAAGTTAAAGTCGA+GGG - chr8_1:15395750-15395769 Msa1181090:intron 35.0%
ACGAGTATGATATTTACCTG+TGG + chr8_1:15395784-15395803 None:intergenic 35.0%
ATAGTTCCACCTGTAACTTT+AGG - chr8_1:15396000-15396019 Msa1181090:intron 35.0%
GGATTACTATGAGTAAGAAG+TGG + chr8_1:15396030-15396049 None:intergenic 35.0%
!! CTGAAAAGTATTGTGTATGG+TGG - chr8_1:15396084-15396103 Msa1181090:intron 35.0%
! TCTTCTGTGTTGGATCTTTT+TGG + chr8_1:15396640-15396659 None:intergenic 35.0%
! GATCAATACAATGAAGTGCT+AGG - chr8_1:15396667-15396686 Msa1181090:intron 35.0%
GAAGAATGAAATTCTTCCTC+TGG + chr8_1:15396693-15396712 None:intergenic 35.0%
CTAATACCACCAGTTGTATA+CGG - chr8_1:15396751-15396770 Msa1181090:intron 35.0%
! AATCCTTTTCATCGTTCTCA+CGG + chr8_1:15396786-15396805 None:intergenic 35.0%
! GTGTTTTACTATGTTAGCAC+TGG - chr8_1:15396913-15396932 Msa1181090:intron 35.0%
AACTCATTGAAAAGCTTGGA+TGG - chr8_1:15396983-15397002 Msa1181090:intron 35.0%
!! ATGGACTGTTGAATTTGTTG+TGG - chr8_1:15397067-15397086 Msa1181090:intron 35.0%
TAAGCAGTGTGTTAAGAGTC+CGG - chr8_1:15393906-15393925 Msa1181090:CDS 40.0%
!! GATTAGGAGTGTCTAGGTAT+TGG - chr8_1:15394055-15394074 Msa1181090:CDS 40.0%
TTTGAGAAACCACCAACACA+TGG - chr8_1:15394543-15394562 Msa1181090:intron 40.0%
! ATTGTATCAGGTTGTTGCAC+AGG + chr8_1:15394633-15394652 None:intergenic 40.0%
TGAATATTGGACGGTTCAAC+TGG - chr8_1:15394738-15394757 Msa1181090:CDS 40.0%
TGCTTTGATCCCGATTACAT+TGG - chr8_1:15394790-15394809 Msa1181090:CDS 40.0%
AACCAGACTCCAATGTAATC+GGG + chr8_1:15394802-15394821 None:intergenic 40.0%
CAACCAGACTCCAATGTAAT+CGG + chr8_1:15394803-15394822 None:intergenic 40.0%
! GTTACAACTTCACCGTTTTG+AGG + chr8_1:15395546-15395565 None:intergenic 40.0%
!! TTCAGGTTGTTTGGACAAAG+TGG + chr8_1:15395700-15395719 None:intergenic 40.0%
CTTTGTGGAAGTTAAAGTCG+AGG - chr8_1:15395749-15395768 Msa1181090:intron 40.0%
TTGTTAAACAGGATCTGCTG+AGG - chr8_1:15395975-15395994 Msa1181090:intron 40.0%
TGTTAAACAGGATCTGCTGA+GGG - chr8_1:15395976-15395995 Msa1181090:intron 40.0%
AGTGGTGTTCCTAAAGTTAC+AGG + chr8_1:15396012-15396031 None:intergenic 40.0%
TGCAGTGAATATTGTTGCTC+TGG - chr8_1:15396348-15396367 Msa1181090:CDS 40.0%
CTGGCTATTGCAAACTTGAT+TGG - chr8_1:15396367-15396386 Msa1181090:CDS 40.0%
GCTATTGCAAACTTGATTGG+TGG - chr8_1:15396370-15396389 Msa1181090:CDS 40.0%
ATAACTCACACTGTGACCAA+GGG + chr8_1:15396404-15396423 None:intergenic 40.0%
TATAACTCACACTGTGACCA+AGG + chr8_1:15396405-15396424 None:intergenic 40.0%
AAGATCCAACACAGAAGAAG+TGG - chr8_1:15396642-15396661 Msa1181090:intron 40.0%
AATGTGAAGCCGTATACAAC+TGG + chr8_1:15396763-15396782 None:intergenic 40.0%
ATTCCGTGAGAACGATGAAA+AGG - chr8_1:15396780-15396799 Msa1181090:intron 40.0%
!! AGCTAAGTAAGAAAGCACTG+TGG + chr8_1:15396947-15396966 None:intergenic 40.0%
ACAGTGCTTTCTTACTTAGC+TGG - chr8_1:15396946-15396965 Msa1181090:intron 40.0%
AAAGCTTGGATGGTTTGAAC+CGG - chr8_1:15396993-15397012 Msa1181090:intron 40.0%
!! AAATCTGGGTTGATTCTGCA+AGG + chr8_1:15397031-15397050 None:intergenic 40.0%
TTGCAGAATCAACCCAGATT+TGG - chr8_1:15397030-15397049 Msa1181090:intron 40.0%
TGTCTGTGTCATGTTGTGTC+CGG - chr8_1:15394174-15394193 Msa1181090:CDS 45.0%
CTGAAGCACGGATACTAACA+CGG + chr8_1:15394203-15394222 None:intergenic 45.0%
GAAGTAGAATCCTCAGGAAG+AGG + chr8_1:15394432-15394451 None:intergenic 45.0%
CAGTAGAATCCATGTGTTGG+TGG + chr8_1:15394555-15394574 None:intergenic 45.0%
GGACAGTAGAATCCATGTGT+TGG + chr8_1:15394558-15394577 None:intergenic 45.0%
CAACTGGATGAACTGAGAAC+TGG - chr8_1:15394754-15394773 Msa1181090:CDS 45.0%
GTAATCGGGATCAAAGCAAC+TGG + chr8_1:15394788-15394807 None:intergenic 45.0%
ATCCCGATTACATTGGAGTC+TGG - chr8_1:15394797-15394816 Msa1181090:CDS 45.0%
CTTTGTCTTGAACAGGTAGC+TGG - chr8_1:15394837-15394856 Msa1181090:intron 45.0%
TAGCTGGTTATTCCCTGGAT+TGG - chr8_1:15394853-15394872 Msa1181090:intron 45.0%
TGGAGTGATTGGGGTGTAAT+AGG - chr8_1:15395582-15395601 Msa1181090:intron 45.0%
AGTGATTGGGGTGTAATAGG+TGG - chr8_1:15395585-15395604 Msa1181090:intron 45.0%
AATAGGTGGTACTAGTTCCG+AGG - chr8_1:15395599-15395618 Msa1181090:intron 45.0%
GGTGTTCCTAAAGTTACAGG+TGG + chr8_1:15396009-15396028 None:intergenic 45.0%
ACCAGCAAGTAACAAGCCAT+TGG - chr8_1:15396056-15396075 Msa1181090:intron 45.0%
!! TCCAATGGCTTGTTACTTGC+TGG + chr8_1:15396060-15396079 None:intergenic 45.0%
!!! ATTGGTGGACTTTTTGCCCT+TGG - chr8_1:15396385-15396404 Msa1181090:CDS 45.0%
ATCCAACACAGAAGAAGTGG+TGG - chr8_1:15396645-15396664 Msa1181090:intron 45.0%
ATCCACCACTTCTTCTGTGT+TGG + chr8_1:15396650-15396669 None:intergenic 45.0%
TGCAAGGAGAAACTTGATGC+CGG + chr8_1:15397015-15397034 None:intergenic 45.0%
TACTGCTGCTGCTACTATGC+TGG + chr8_1:15393638-15393657 None:intergenic 50.0%
! CATAAGTGTCGTGTCGGTGT+CGG + chr8_1:15394101-15394120 None:intergenic 50.0%
ACGGATACTAACACGGACAC+CGG + chr8_1:15394196-15394215 None:intergenic 50.0%
!! GACTCATGAGCTCTGAAGCA+CGG + chr8_1:15394215-15394234 None:intergenic 50.0%
TTCTGATCCTCCTCTTCCTG+AGG - chr8_1:15394419-15394438 Msa1181090:CDS 50.0%
GTAGAATCCTCAGGAAGAGG+AGG + chr8_1:15394429-15394448 None:intergenic 50.0%
ACAGGTAGCTGGTTATTCCC+TGG - chr8_1:15394848-15394867 Msa1181090:intron 50.0%
! TTGTTACTTGCTGGTGCAGC+TGG + chr8_1:15396051-15396070 None:intergenic 50.0%
! ACAATGAAGTGCTAGGCCAG+AGG - chr8_1:15396674-15396693 Msa1181090:intron 50.0%
GTGAAGCCGTATACAACTGG+TGG + chr8_1:15396760-15396779 None:intergenic 50.0%
TTCAAGCTAGCAGCAGTTGC+AGG - chr8_1:15396805-15396824 Msa1181090:intron 50.0%
GTCTCGGACGACGTCACATA+TGG + chr8_1:15393872-15393891 None:intergenic 55.0%
GGAAGAGGAGGATCAGAAGC+AGG + chr8_1:15394417-15394436 None:intergenic 55.0%
GTCGAGGGATCATCGTCCAC+AGG - chr8_1:15395765-15395784 Msa1181090:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 15393549 15397266 15393549 ID=Msa1181090;Name=Msa1181090
chr8_1 mRNA 15393549 15397266 15393549 ID=Msa1181090-mRNA-1;Parent=Msa1181090;Name=Msa1181090-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.71|1|1|1|7|204|579
chr8_1 exon 15393549 15394202 15393549 ID=Msa1181090-mRNA-1:exon:5803;Parent=Msa1181090-mRNA-1
chr8_1 exon 15394401 15394462 15394401 ID=Msa1181090-mRNA-1:exon:5802;Parent=Msa1181090-mRNA-1
chr8_1 exon 15394644 15394829 15394644 ID=Msa1181090-mRNA-1:exon:5801;Parent=Msa1181090-mRNA-1
chr8_1 exon 15395029 15395472 15395029 ID=Msa1181090-mRNA-1:exon:5800;Parent=Msa1181090-mRNA-1
chr8_1 exon 15395907 15395963 15395907 ID=Msa1181090-mRNA-1:exon:5799;Parent=Msa1181090-mRNA-1
chr8_1 exon 15396125 15396520 15396125 ID=Msa1181090-mRNA-1:exon:5798;Parent=Msa1181090-mRNA-1
chr8_1 exon 15397122 15397266 15397122 ID=Msa1181090-mRNA-1:exon:5797;Parent=Msa1181090-mRNA-1
chr8_1 CDS 15397122 15397266 15397122 ID=Msa1181090-mRNA-1:cds;Parent=Msa1181090-mRNA-1
chr8_1 CDS 15396125 15396520 15396125 ID=Msa1181090-mRNA-1:cds;Parent=Msa1181090-mRNA-1
chr8_1 CDS 15395907 15395963 15395907 ID=Msa1181090-mRNA-1:cds;Parent=Msa1181090-mRNA-1
chr8_1 CDS 15395029 15395472 15395029 ID=Msa1181090-mRNA-1:cds;Parent=Msa1181090-mRNA-1
chr8_1 CDS 15394644 15394829 15394644 ID=Msa1181090-mRNA-1:cds;Parent=Msa1181090-mRNA-1
chr8_1 CDS 15394401 15394462 15394401 ID=Msa1181090-mRNA-1:cds;Parent=Msa1181090-mRNA-1
chr8_1 CDS 15393753 15394202 15393753 ID=Msa1181090-mRNA-1:cds;Parent=Msa1181090-mRNA-1
chr8_1 three_prime_UTR 15393549 15393752 15393549 ID=Msa1181090-mRNA-1:three_prime_utr;Parent=Msa1181090-mRNA-1
Gene Sequence

>Msa1181090

ATGGAAGTTATTAATGTAAATCAATGGAACAATGAAGCTGATAATGATGAAGTTGAAGAAATCAGCTTGCAACGAAAGAGTGTTGTCCAGCATAGTAGCAGCAGCAGTACCAGCAGTTCAGAAAATAATTACATAGAAGCAAAAGGTGGAGGCCTAGACTTCATTGAATCTGAGACAAAACCGAAATTTGAAGTGGAGATAAAAGAAAGGAATGCTGAAATGATCATCCAAAATGAGGATATTGATGAAAATGACACAATTTTACCTGCTTCTGATCCTCCTCTTCCTGAGGATTCTACTTCTTTGATCAATGTGACAAATGAAAGTGACACAGTTATTGTAGTAGATAAAGAAAATGGTCAAGAAAGACAAGAATTTTATTTGGAAAAGGTGTTTGAGAAACCACCAACACATGGATTCTACTGTCCTAATTGTAATGTTTGTATCCAAAAGGTGTACATTCAAAAGATCTACATTCAACCTGTGCAACAACCTGATACAATAAGATGCTCATCATGCTTCAGTTTCCTCATTCCAATAGGTAGCTGGTTATTCCCTGGATTGGTATCTAATAGAGATGGAGAATTAAATGATCAAGGTTTATCAAGTAACCAAAGAAATCCTGAAATCACTGAACAAACTTTCAAAGTTGCATCACAACAAGAAGCTGATTCAATACTTGGTCAATCTGAGGAAGTGAATCAATCTGTAACAAGAGGTACCAAAACAGTCACTAAAATTGTAGATGACTCAGGAAAACAAACCATGCAAATCATTGAAGATGTGGTCATTGTTAGACCTCAAAACGGTGAAGTTGTAACAAAAAAGAAACATTTTTGGAGTGATTGGGGTGTAATAGGTGGTACTAGTTCCGAGGTTCCAAAAACAAAGCAACCCGAAAATGGATCTACCGAAAATAGTGATTGGAAAGTTATAGGTTCTGGTTCTCAGTCCACTTTGTCCAAACAACCTGAAAATAACTTTGAAGACAATAAACAGTCAGACTTTGTGGAAGTTAAAGTCGAGGGATCATCGTCCACAGGATCTGCTGAGGGAATAGTTCCACCTGTAACTTTAGGAACACCACTTCTTACTCATAGTAATCCAGCTGCACCAGCAAGTAACAAGCCATTGGAGATTCTGAAAAGTATTGTGTATGGTGGTTTGACTGAATCATTAGCAAGTCTTAGTGTTGTGACATCTGCAGCAAGTGCTGATGCTGCCACATTGAATATTGTTGCTCTGGCTATTGCAAACTTGATTGGTGGACTTTTTGCCCTTGGTCACAGTCTTAGGGAACTAAAAGCTAATGAACCAAAAAGATCCAACACAGAAGAAGTGGTGGATCAATACAATGAAGTGCTAGGCCAGAGGAAGAATTTCATTCTTCATGCATTCATTGCAATCTTATCATTCATTATTTTTGGACTAATACCACCAGTTGTATACGGCTTCACATTCCGTGAGAACGATGAAAAGGATTTCAAGCTAGCAGCAGTTGCAGGAGCTTCACTTATATGCATCACATTGCTTTCTATTGCAAAAGCTTATATCAAGAGACCAAACAGTTACTTAACATATTTTCAAACAGTGTTTTACTATGTTAGCACTGGTGCTGTTGCCACAGTGCTTTCTTACTTAGCTGGTGATATGATGAAGAAACTCATTGAAAAGCTTGGATGGTTTGAACCGGCATCAAGTTTCTCCTTGCAGAATCAACCCAGATTTGGATCATATTAA

Protein sequence

>Msa1181090

MEVINVNQWNNEADNDEVEEISLQRKSVVQHSSSSSTSSSENNYIEAKGGGLDFIESETKPKFEVEIKERNAEMIIQNEDIDENDTILPASDPPLPEDSTSLINVTNESDTVIVVDKENGQERQEFYLEKVFEKPPTHGFYCPNCNVCIQKVYIQKIYIQPVQQPDTIRCSSCFSFLIPIGSWLFPGLVSNRDGELNDQGLSSNQRNPEITEQTFKVASQQEADSILGQSEEVNQSVTRGTKTVTKIVDDSGKQTMQIIEDVVIVRPQNGEVVTKKKHFWSDWGVIGGTSSEVPKTKQPENGSTENSDWKVIGSGSQSTLSKQPENNFEDNKQSDFVEVKVEGSSSTGSAEGIVPPVTLGTPLLTHSNPAAPASNKPLEILKSIVYGGLTESLASLSVVTSAASADAATLNIVALAIANLIGGLFALGHSLRELKANEPKRSNTEEVVDQYNEVLGQRKNFILHAFIAILSFIIFGLIPPVVYGFTFRENDEKDFKLAAVAGASLICITLLSIAKAYIKRPNSYLTYFQTVFYYVSTGAVATVLSYLAGDMMKKLIEKLGWFEPASSFSLQNQPRFGSY*