Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910890 | XP_013443336.1 | 98.256 | 172 | 3 | 0 | 1 | 172 | 1 | 172 | 4.04e-121 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910890 | sp|Q9XH44|CET1_TOBAC | 74.419 | 172 | 43 | 1 | 2 | 172 | 3 | 174 | 2.42e-93 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0910890 | 0.808558 | 2.919966e-50 | -8.615850e-47 |
| Msa0631700 | Msa0910890 | 0.800548 | 1.368537e-48 | -8.615850e-47 |
| Msa0670360 | Msa0910890 | 0.809228 | 2.099093e-50 | -8.615850e-47 |
| Msa0735140 | Msa0910890 | 0.814431 | 1.545802e-51 | -8.615850e-47 |
| Msa0768720 | Msa0910890 | 0.811781 | 5.897488e-51 | -8.615850e-47 |
| Msa0777070 | Msa0910890 | 0.803889 | 2.810635e-49 | -8.615850e-47 |
| Msa0786940 | Msa0910890 | 0.830193 | 3.370986e-55 | -8.615850e-47 |
| Msa0814160 | Msa0910890 | 0.823564 | 1.294183e-53 | -8.615850e-47 |
| Msa0822410 | Msa0910890 | 0.814867 | 1.238186e-51 | -8.615850e-47 |
| Msa0140270 | Msa0910890 | 0.805154 | 1.531158e-49 | -8.615850e-47 |
| Msa0143150 | Msa0910890 | 0.805332 | 1.405272e-49 | -8.615850e-47 |
| Msa0150910 | Msa0910890 | 0.818917 | 1.526204e-52 | -8.615850e-47 |
| Msa0380680 | Msa0910890 | 0.800139 | 1.658269e-48 | -8.615850e-47 |
| Msa0261400 | Msa0910890 | 0.807992 | 3.854443e-50 | -8.615850e-47 |
| Msa0307040 | Msa0910890 | 0.812348 | 4.435519e-51 | -8.615850e-47 |
| Msa0349910 | Msa0910890 | 0.806843 | 6.756780e-50 | -8.615850e-47 |
| Msa0535570 | Msa0910890 | 0.802186 | 6.321376e-49 | -8.615850e-47 |
| Msa0854840 | Msa0910890 | 0.807351 | 5.274111e-50 | -8.615850e-47 |
| Msa0861730 | Msa0910890 | 0.815122 | 1.086551e-51 | -8.615850e-47 |
| Msa0910890 | Msa0913550 | 0.805932 | 1.051286e-49 | -8.615850e-47 |
| Msa0910890 | Msa0946010 | 0.806237 | 9.068684e-50 | -8.615850e-47 |
| Msa0910890 | Msa0946310 | 0.808004 | 3.831749e-50 | -8.615850e-47 |
| Msa0910890 | Msa0956450 | 0.874611 | 5.897453e-68 | -8.615850e-47 |
| Msa0910890 | Msa0987640 | 0.815804 | 7.663162e-52 | -8.615850e-47 |
| Msa0910890 | Msa0991710 | 0.862294 | 5.611143e-64 | -8.615850e-47 |
| Msa0910890 | Msa1006220 | 0.815740 | 7.917515e-52 | -8.615850e-47 |
| Msa0910890 | Msa1015560 | 0.806756 | 7.047114e-50 | -8.615850e-47 |
| Msa0910890 | Msa1030320 | 0.805027 | 1.627422e-49 | -8.615850e-47 |
| Msa0910890 | Msa1069350 | 0.803256 | 3.801770e-49 | -8.615850e-47 |
| Msa0910890 | Msa1156240 | 0.819185 | 1.326464e-52 | -8.615850e-47 |
| Msa0910890 | Msa1157210 | 0.806990 | 6.287939e-50 | -8.615850e-47 |
| Msa0910890 | Msa1164690 | 0.818802 | 1.620522e-52 | -8.615850e-47 |
| Msa0910890 | Msa1181090 | 0.805603 | 1.232730e-49 | -8.615850e-47 |
| Msa0910890 | Msa1225850 | 0.806422 | 8.289576e-50 | -8.615850e-47 |
| Msa0910890 | Msa1323080 | 0.813966 | 1.958965e-51 | -8.615850e-47 |
| Msa0910890 | Msa1343590 | 0.856026 | 4.248116e-62 | -8.615850e-47 |
| Msa0910890 | Msa1386120 | 0.808785 | 2.611353e-50 | -8.615850e-47 |
| Msa0910890 | Msa1421130 | 0.803585 | 3.249991e-49 | -8.615850e-47 |
| Msa0910890 | Msa1427670 | 0.808499 | 3.006181e-50 | -8.615850e-47 |
| Msa0910890 | Msa1459610 | 0.800649 | 1.305215e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910890 | MtrunA17_Chr6g0472451 | 98.256 | 172 | 3 | 0 | 1 | 172 | 1 | 172 | 3.72e-125 | 348 |
| Msa0910890 | MtrunA17_Chr7g0266201 | 70.833 | 168 | 48 | 1 | 6 | 172 | 7 | 174 | 8.13e-88 | 254 |
| Msa0910890 | MtrunA17_Chr2g0321301 | 66.474 | 173 | 57 | 1 | 1 | 172 | 1 | 173 | 9.88e-87 | 251 |
| Msa0910890 | MtrunA17_Chr1g0178751 | 62.264 | 159 | 58 | 1 | 6 | 162 | 7 | 165 | 4.61e-75 | 222 |
| Msa0910890 | MtrunA17_Chr7g0252784 | 59.036 | 166 | 68 | 0 | 7 | 172 | 8 | 173 | 9.14e-74 | 219 |
| Msa0910890 | MtrunA17_Chr6g0461711 | 58.084 | 167 | 70 | 0 | 6 | 172 | 7 | 173 | 1.67e-69 | 208 |
| Msa0910890 | MtrunA17_Chr7g0214771 | 57.485 | 167 | 70 | 1 | 7 | 172 | 8 | 174 | 2.13e-67 | 203 |
| Msa0910890 | MtrunA17_Chr7g0252800 | 57.895 | 171 | 71 | 1 | 2 | 172 | 5 | 174 | 2.62e-67 | 202 |
| Msa0910890 | MtrunA17_Chr7g0214761 | 55.556 | 171 | 75 | 1 | 3 | 172 | 4 | 174 | 1.11e-66 | 201 |
| Msa0910890 | MtrunA17_Chr8g0392741 | 53.757 | 173 | 78 | 2 | 1 | 172 | 2 | 173 | 1.14e-63 | 193 |
| Msa0910890 | MtrunA17_Chr7g0252811 | 53.750 | 160 | 73 | 1 | 13 | 172 | 36 | 194 | 3.14e-59 | 183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910890 | AT5G62040.1 | 68.966 | 174 | 52 | 2 | 1 | 172 | 1 | 174 | 7.46e-85 | 247 |
| Msa0910890 | AT2G27550.1 | 69.822 | 169 | 49 | 2 | 6 | 172 | 7 | 175 | 1.43e-82 | 241 |
| Msa0910890 | AT5G03840.1 | 62.791 | 172 | 63 | 1 | 2 | 172 | 6 | 177 | 2.76e-81 | 238 |
| Msa0910890 | AT1G65480.1 | 62.275 | 167 | 63 | 0 | 6 | 172 | 7 | 173 | 6.74e-76 | 224 |
| Msa0910890 | AT1G65480.2 | 62.275 | 167 | 63 | 0 | 6 | 172 | 51 | 217 | 1.09e-75 | 226 |
| Msa0910890 | AT4G20370.1 | 58.683 | 167 | 69 | 0 | 6 | 172 | 7 | 173 | 7.78e-69 | 207 |
| Msa0910890 | AT1G18100.1 | 52.299 | 174 | 80 | 2 | 1 | 172 | 1 | 173 | 2.89e-61 | 187 |
Find 46 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCTAGTGATCCACATTTA+AGG | 0.192828 | 6_2:+15994561 | Msa0910890:CDS |
| CTTTCTGTGGGAAGAGTAAT+AGG | 0.309571 | 6_2:+15993831 | Msa0910890:CDS |
| TGGATTCCAATCACTGGCTT+TGG | 0.338572 | 6_2:-15995151 | None:intergenic |
| GGTACCACAGATGTCTCTTT+TGG | 0.356770 | 6_2:+15994714 | Msa0910890:CDS |
| TCACTAGGACTAGGAGCATC+TGG | 0.365823 | 6_2:-15994548 | None:intergenic |
| CATGAGATCTGCTTATACTT+TGG | 0.379247 | 6_2:+15993986 | Msa0910890:CDS |
| AACAAACCAAGGGTTGATAT+TGG | 0.388670 | 6_2:+15993954 | Msa0910890:CDS |
| ACAAGATGAAGACATATCTA+TGG | 0.389834 | 6_2:-15995171 | None:intergenic |
| TCCTAGTGATCCACATTTAA+GGG | 0.415346 | 6_2:+15994562 | Msa0910890:CDS |
| GAGAATCCAAAGCCAGTGAT+TGG | 0.439509 | 6_2:+15995145 | Msa0910890:CDS |
| TTGAAGTAAACTGCAGCAAC+AGG | 0.458327 | 6_2:-15995286 | None:intergenic |
| ATGACCATTTGCAACTTGCT+TGG | 0.464272 | 6_2:-15993907 | None:intergenic |
| GTCACATTCATTCTTACACT+TGG | 0.469107 | 6_2:-15993876 | None:intergenic |
| ATTACTCTTCCCACAGAAAG+TGG | 0.479666 | 6_2:-15993828 | None:intergenic |
| CCCTTGGTTTGTTCATAACA+AGG | 0.487572 | 6_2:-15993944 | None:intergenic |
| AGTTATCATGTCTAGGCCAT+TGG | 0.492357 | 6_2:+15993803 | None:intergenic |
| GAGAAACTGCAGCAAGAAGA+AGG | 0.495118 | 6_2:+15995317 | Msa0910890:CDS |
| TTGAAATTGTCTCTAGAAGA+TGG | 0.510509 | 6_2:-15995226 | None:intergenic |
| TCAACCAAGCAAGTTGCAAA+TGG | 0.516791 | 6_2:+15993903 | Msa0910890:CDS |
| TTCTCACAGGAGAATAACCT+TGG | 0.519597 | 6_2:+15995259 | Msa0910890:CDS |
| GCCATTGGAACCACTTTCTG+TGG | 0.523027 | 6_2:+15993818 | Msa0910890:CDS |
| TCATCTTGTTCAAGCAGAGA+AGG | 0.540166 | 6_2:+15995185 | Msa0910890:CDS |
| TGAAATTGTCTCTAGAAGAT+GGG | 0.541509 | 6_2:-15995225 | None:intergenic |
| AAATGTGGATCACTAGGACT+AGG | 0.546629 | 6_2:-15994557 | None:intergenic |
| CACTAGGACTAGGAGCATCT+GGG | 0.549402 | 6_2:-15994547 | None:intergenic |
| CCCTTGTTATGAACAAACCA+AGG | 0.549899 | 6_2:+15993943 | Msa0910890:CDS |
| AGGATGGTTACAGATATTCC+AGG | 0.555677 | 6_2:+15994693 | Msa0910890:intron |
| TCACCACCAATATCAACCCT+TGG | 0.557340 | 6_2:-15993960 | None:intergenic |
| AAAGAGACATCTGTGGTACC+TGG | 0.563172 | 6_2:-15994711 | None:intergenic |
| CAACACAAGGAGATTCTCAC+AGG | 0.564893 | 6_2:+15995246 | Msa0910890:CDS |
| GGTTTGTTCATAACAAGGGA+AGG | 0.566450 | 6_2:-15993939 | None:intergenic |
| TATCTATGGATTCCAATCAC+TGG | 0.569156 | 6_2:-15995157 | None:intergenic |
| AAACCAAGGGTTGATATTGG+TGG | 0.571568 | 6_2:+15993957 | Msa0910890:CDS |
| ATTTAAGGGAACATCTCCAC+TGG | 0.572031 | 6_2:+15994576 | Msa0910890:CDS |
| CATTGTGAGTTATCATGTCT+AGG | 0.573768 | 6_2:+15993796 | None:intergenic |
| CCCACAGAAAGTGGTTCCAA+TGG | 0.583192 | 6_2:-15993819 | None:intergenic |
| CTAGAGACAATTTCAACACA+AGG | 0.589107 | 6_2:+15995233 | Msa0910890:CDS |
| CCTTGTTATGAACAAACCAA+GGG | 0.593072 | 6_2:+15993944 | Msa0910890:CDS |
| TCCCTTAAATGTGGATCACT+AGG | 0.597152 | 6_2:-15994563 | None:intergenic |
| CCATTGGAACCACTTTCTGT+GGG | 0.604977 | 6_2:+15993819 | Msa0910890:CDS |
| TGGAGATGTTCCCTTAAATG+TGG | 0.614063 | 6_2:-15994572 | None:intergenic |
| GAAATTGTCTCTAGAAGATG+GGG | 0.619592 | 6_2:-15995224 | None:intergenic |
| CCTTGGTTTGTTCATAACAA+GGG | 0.622038 | 6_2:-15993943 | None:intergenic |
| TGATGCAGGAAATGAGATTG+TGG | 0.645531 | 6_2:+15995117 | Msa0910890:intron |
| CTGCAGCAACAGGTAAACCA+AGG | 0.708296 | 6_2:-15995276 | None:intergenic |
| CTAACCAAAAGAGACATCTG+TGG | 0.754543 | 6_2:-15994718 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAAAAAATAATAACAAA+AGG | + | chr6_2:15994255-15994274 | Msa0910890:intron | 10.0% |
| !!! | TTATATATTGATAATAACAT+AGG | + | chr6_2:15994484-15994503 | Msa0910890:intron | 10.0% |
| !! | ATATAGAGAATAATTAATTA+AGG | - | chr6_2:15994773-15994792 | None:intergenic | 10.0% |
| !! | GTAAAAAAAATAATAACAAA+AGG | + | chr6_2:15994255-15994274 | Msa0910890:intron | 10.0% |
| !!! | TTATATATTGATAATAACAT+AGG | + | chr6_2:15994484-15994503 | Msa0910890:intron | 10.0% |
| !! | ATATAGAGAATAATTAATTA+AGG | - | chr6_2:15994773-15994792 | None:intergenic | 10.0% |
| !! | TTCATATGTTTCAAAATATA+AGG | + | chr6_2:15994024-15994043 | Msa0910890:intron | 15.0% |
| !! | GGAAATAAATATACTAATAA+AGG | - | chr6_2:15994129-15994148 | None:intergenic | 15.0% |
| !!! | TATTTAGTTTTTTTACTTGA+AGG | - | chr6_2:15994210-15994229 | None:intergenic | 15.0% |
| !!! | ATAACAAATGTTTTAGAAAT+CGG | - | chr6_2:15994419-15994438 | None:intergenic | 15.0% |
| !! | ATGTAACTTAATTAAAAGAA+TGG | + | chr6_2:15995056-15995075 | Msa0910890:intron | 15.0% |
| !! | TTCATATGTTTCAAAATATA+AGG | + | chr6_2:15994024-15994043 | Msa0910890:intron | 15.0% |
| !! | GGAAATAAATATACTAATAA+AGG | - | chr6_2:15994129-15994148 | None:intergenic | 15.0% |
| !!! | TATTTAGTTTTTTTACTTGA+AGG | - | chr6_2:15994210-15994229 | None:intergenic | 15.0% |
| !!! | ATAACAAATGTTTTAGAAAT+CGG | - | chr6_2:15994419-15994438 | None:intergenic | 15.0% |
| !! | ATGTAACTTAATTAAAAGAA+TGG | + | chr6_2:15995056-15995075 | Msa0910890:intron | 15.0% |
| !! | CAATGATAAAAAACATGATT+TGG | - | chr6_2:15994150-15994169 | None:intergenic | 20.0% |
| !!! | TTCTAAAACATTTGTTATAG+TGG | + | chr6_2:15994421-15994440 | Msa0910890:intron | 20.0% |
| !!! | TCTCTATATTTGTTAATCTA+AGG | + | chr6_2:15994784-15994803 | Msa0910890:intron | 20.0% |
| !! | TAATTTATTACATATGTGCA+TGG | + | chr6_2:15994905-15994924 | Msa0910890:intron | 20.0% |
| !! | CAATGATAAAAAACATGATT+TGG | - | chr6_2:15994150-15994169 | None:intergenic | 20.0% |
| !!! | TTCTAAAACATTTGTTATAG+TGG | + | chr6_2:15994421-15994440 | Msa0910890:intron | 20.0% |
| !!! | TCTCTATATTTGTTAATCTA+AGG | + | chr6_2:15994784-15994803 | Msa0910890:intron | 20.0% |
| !! | TAATTTATTACATATGTGCA+TGG | + | chr6_2:15994905-15994924 | Msa0910890:intron | 20.0% |
| ! | ACTAATAAAGGTAGTTAGTT+AGG | - | chr6_2:15994117-15994136 | None:intergenic | 25.0% |
| ! | AGTTAGTTCAAACAATTAAG+CGG | - | chr6_2:15994388-15994407 | None:intergenic | 25.0% |
| ! | AGGATTAATATACCAAATGA+TGG | + | chr6_2:15994504-15994523 | Msa0910890:intron | 25.0% |
| !!! | AGTTTTATTATACAAACCAG+TGG | - | chr6_2:15994595-15994614 | None:intergenic | 25.0% |
| ! | ATTAAGGTTATATTGATCCT+AGG | - | chr6_2:15994757-15994776 | None:intergenic | 25.0% |
| ! | TTAAACAACTTGAGTTCAAT+TGG | + | chr6_2:15994851-15994870 | Msa0910890:intron | 25.0% |
| ! | TGAAAATGTTAAAATCCTCA+TGG | - | chr6_2:15994885-15994904 | None:intergenic | 25.0% |
| ! | TTACATGTATGGTTGTAAAA+AGG | - | chr6_2:15995021-15995040 | None:intergenic | 25.0% |
| ! | ACTAATAAAGGTAGTTAGTT+AGG | - | chr6_2:15994117-15994136 | None:intergenic | 25.0% |
| ! | AGTTAGTTCAAACAATTAAG+CGG | - | chr6_2:15994388-15994407 | None:intergenic | 25.0% |
| ! | AGGATTAATATACCAAATGA+TGG | + | chr6_2:15994504-15994523 | Msa0910890:intron | 25.0% |
| !!! | AGTTTTATTATACAAACCAG+TGG | - | chr6_2:15994595-15994614 | None:intergenic | 25.0% |
| ! | ATTAAGGTTATATTGATCCT+AGG | - | chr6_2:15994757-15994776 | None:intergenic | 25.0% |
| ! | TTAAACAACTTGAGTTCAAT+TGG | + | chr6_2:15994851-15994870 | Msa0910890:intron | 25.0% |
| ! | TGAAAATGTTAAAATCCTCA+TGG | - | chr6_2:15994885-15994904 | None:intergenic | 25.0% |
| ! | TTACATGTATGGTTGTAAAA+AGG | - | chr6_2:15995021-15995040 | None:intergenic | 25.0% |
| TACTTCGCTAATGTAACATA+TGG | - | chr6_2:15994068-15994087 | None:intergenic | 30.0% | |
| ! | TACATTAGCGAAGTATCTAT+CGG | + | chr6_2:15994073-15994092 | Msa0910890:intron | 30.0% |
| AATCCAGTTCAATGAGAATA+AGG | + | chr6_2:15994322-15994341 | Msa0910890:intron | 30.0% | |
| ATACCTTATTCTCATTGAAC+TGG | - | chr6_2:15994328-15994347 | None:intergenic | 30.0% | |
| GTTAGTTCAAACAATTAAGC+GGG | - | chr6_2:15994387-15994406 | None:intergenic | 30.0% | |
| GCTTAATTGTTTGAACTAAC+TGG | + | chr6_2:15994387-15994406 | Msa0910890:intron | 30.0% | |
| ATTGTTTGAACTAACTGGTT+CGG | + | chr6_2:15994392-15994411 | Msa0910890:intron | 30.0% | |
| TTTATTCCCTCTTATCAACT+TGG | + | chr6_2:15994655-15994674 | Msa0910890:intron | 30.0% | |
| !! | ATAACACCAAGTTGATAAGA+GGG | - | chr6_2:15994664-15994683 | None:intergenic | 30.0% |
| TTAAATCCTCAAGTTCTTAG+TGG | - | chr6_2:15994835-15994854 | None:intergenic | 30.0% | |
| TGTGATGCAATTTACATGTA+TGG | - | chr6_2:15995032-15995051 | None:intergenic | 30.0% | |
| ACAAGATGAAGACATATCTA+TGG | - | chr6_2:15995174-15995193 | None:intergenic | 30.0% | |
| ! | TGAAATTGTCTCTAGAAGAT+GGG | - | chr6_2:15995228-15995247 | None:intergenic | 30.0% |
| ! | TTGAAATTGTCTCTAGAAGA+TGG | - | chr6_2:15995229-15995248 | None:intergenic | 30.0% |
| TACTTCGCTAATGTAACATA+TGG | - | chr6_2:15994068-15994087 | None:intergenic | 30.0% | |
| ! | TACATTAGCGAAGTATCTAT+CGG | + | chr6_2:15994073-15994092 | Msa0910890:intron | 30.0% |
| AATCCAGTTCAATGAGAATA+AGG | + | chr6_2:15994322-15994341 | Msa0910890:intron | 30.0% | |
| ATACCTTATTCTCATTGAAC+TGG | - | chr6_2:15994328-15994347 | None:intergenic | 30.0% | |
| GTTAGTTCAAACAATTAAGC+GGG | - | chr6_2:15994387-15994406 | None:intergenic | 30.0% | |
| GCTTAATTGTTTGAACTAAC+TGG | + | chr6_2:15994387-15994406 | Msa0910890:intron | 30.0% | |
| ATTGTTTGAACTAACTGGTT+CGG | + | chr6_2:15994392-15994411 | Msa0910890:intron | 30.0% | |
| TTTATTCCCTCTTATCAACT+TGG | + | chr6_2:15994655-15994674 | Msa0910890:intron | 30.0% | |
| !! | ATAACACCAAGTTGATAAGA+GGG | - | chr6_2:15994664-15994683 | None:intergenic | 30.0% |
| TTAAATCCTCAAGTTCTTAG+TGG | - | chr6_2:15994835-15994854 | None:intergenic | 30.0% | |
| TGTGATGCAATTTACATGTA+TGG | - | chr6_2:15995032-15995051 | None:intergenic | 30.0% | |
| ACAAGATGAAGACATATCTA+TGG | - | chr6_2:15995174-15995193 | None:intergenic | 30.0% | |
| ! | TGAAATTGTCTCTAGAAGAT+GGG | - | chr6_2:15995228-15995247 | None:intergenic | 30.0% |
| ! | TTGAAATTGTCTCTAGAAGA+TGG | - | chr6_2:15995229-15995248 | None:intergenic | 30.0% |
| GTCACATTCATTCTTACACT+TGG | - | chr6_2:15993879-15993898 | None:intergenic | 35.0% | |
| !! | CCTTGGTTTGTTCATAACAA+GGG | - | chr6_2:15993946-15993965 | None:intergenic | 35.0% |
| ! | CCTTGTTATGAACAAACCAA+GGG | + | chr6_2:15993944-15993963 | Msa0910890:CDS | 35.0% |
| !! | AACAAACCAAGGGTTGATAT+TGG | + | chr6_2:15993954-15993973 | Msa0910890:CDS | 35.0% |
| CATGAGATCTGCTTATACTT+TGG | + | chr6_2:15993986-15994005 | Msa0910890:CDS | 35.0% | |
| !! | ATCTATCGGCTTTGATGATT+TGG | + | chr6_2:15994087-15994106 | Msa0910890:intron | 35.0% |
| TCATTGAACTGGATTTAACC+AGG | - | chr6_2:15994317-15994336 | None:intergenic | 35.0% | |
| ATCGTAATCAAATCAAACCG+AGG | + | chr6_2:15994349-15994368 | Msa0910890:intron | 35.0% | |
| GATCTACAAGTTCCATCATT+TGG | - | chr6_2:15994519-15994538 | None:intergenic | 35.0% | |
| TCCTAGTGATCCACATTTAA+GGG | + | chr6_2:15994562-15994581 | Msa0910890:CDS | 35.0% | |
| !! | GATAACACCAAGTTGATAAG+AGG | - | chr6_2:15994665-15994684 | None:intergenic | 35.0% |
| ! | CTTTTACCACTAAGAACTTG+AGG | + | chr6_2:15994826-15994845 | Msa0910890:intron | 35.0% |
| CAATTGGAAAATCAACCATG+AGG | + | chr6_2:15994867-15994886 | Msa0910890:intron | 35.0% | |
| AAGGGAATTAACTTTGATGC+AGG | + | chr6_2:15995103-15995122 | Msa0910890:intron | 35.0% | |
| TATCTATGGATTCCAATCAC+TGG | - | chr6_2:15995160-15995179 | None:intergenic | 35.0% | |
| ! | GAAATTGTCTCTAGAAGATG+GGG | - | chr6_2:15995227-15995246 | None:intergenic | 35.0% |
| CTAGAGACAATTTCAACACA+AGG | + | chr6_2:15995233-15995252 | Msa0910890:CDS | 35.0% | |
| GTCACATTCATTCTTACACT+TGG | - | chr6_2:15993879-15993898 | None:intergenic | 35.0% | |
| !! | CCTTGGTTTGTTCATAACAA+GGG | - | chr6_2:15993946-15993965 | None:intergenic | 35.0% |
| ! | CCTTGTTATGAACAAACCAA+GGG | + | chr6_2:15993944-15993963 | Msa0910890:CDS | 35.0% |
| !! | AACAAACCAAGGGTTGATAT+TGG | + | chr6_2:15993954-15993973 | Msa0910890:CDS | 35.0% |
| CATGAGATCTGCTTATACTT+TGG | + | chr6_2:15993986-15994005 | Msa0910890:CDS | 35.0% | |
| !! | ATCTATCGGCTTTGATGATT+TGG | + | chr6_2:15994087-15994106 | Msa0910890:intron | 35.0% |
| TCATTGAACTGGATTTAACC+AGG | - | chr6_2:15994317-15994336 | None:intergenic | 35.0% | |
| ATCGTAATCAAATCAAACCG+AGG | + | chr6_2:15994349-15994368 | Msa0910890:intron | 35.0% | |
| GATCTACAAGTTCCATCATT+TGG | - | chr6_2:15994519-15994538 | None:intergenic | 35.0% | |
| TCCTAGTGATCCACATTTAA+GGG | + | chr6_2:15994562-15994581 | Msa0910890:CDS | 35.0% | |
| !! | GATAACACCAAGTTGATAAG+AGG | - | chr6_2:15994665-15994684 | None:intergenic | 35.0% |
| ! | CTTTTACCACTAAGAACTTG+AGG | + | chr6_2:15994826-15994845 | Msa0910890:intron | 35.0% |
| CAATTGGAAAATCAACCATG+AGG | + | chr6_2:15994867-15994886 | Msa0910890:intron | 35.0% | |
| AAGGGAATTAACTTTGATGC+AGG | + | chr6_2:15995103-15995122 | Msa0910890:intron | 35.0% | |
| TATCTATGGATTCCAATCAC+TGG | - | chr6_2:15995160-15995179 | None:intergenic | 35.0% | |
| ! | GAAATTGTCTCTAGAAGATG+GGG | - | chr6_2:15995227-15995246 | None:intergenic | 35.0% |
| CTAGAGACAATTTCAACACA+AGG | + | chr6_2:15995233-15995252 | Msa0910890:CDS | 35.0% | |
| ATTACTCTTCCCACAGAAAG+TGG | - | chr6_2:15993831-15993850 | None:intergenic | 40.0% | |
| CTTTCTGTGGGAAGAGTAAT+AGG | + | chr6_2:15993831-15993850 | Msa0910890:CDS | 40.0% | |
| TCAACCAAGCAAGTTGCAAA+TGG | + | chr6_2:15993903-15993922 | Msa0910890:CDS | 40.0% | |
| ! | ATGACCATTTGCAACTTGCT+TGG | - | chr6_2:15993910-15993929 | None:intergenic | 40.0% |
| ! | GGTTTGTTCATAACAAGGGA+AGG | - | chr6_2:15993942-15993961 | None:intergenic | 40.0% |
| ! | CCCTTGTTATGAACAAACCA+AGG | + | chr6_2:15993943-15993962 | Msa0910890:CDS | 40.0% |
| !! | CCCTTGGTTTGTTCATAACA+AGG | - | chr6_2:15993947-15993966 | None:intergenic | 40.0% |
| !! | AAACCAAGGGTTGATATTGG+TGG | + | chr6_2:15993957-15993976 | Msa0910890:CDS | 40.0% |
| CAAAAGGCAAAGATGAGAAC+CGG | + | chr6_2:15994271-15994290 | Msa0910890:intron | 40.0% | |
| AAATGTGGATCACTAGGACT+AGG | - | chr6_2:15994560-15994579 | None:intergenic | 40.0% | |
| GTCCTAGTGATCCACATTTA+AGG | + | chr6_2:15994561-15994580 | Msa0910890:CDS | 40.0% | |
| TCCCTTAAATGTGGATCACT+AGG | - | chr6_2:15994566-15994585 | None:intergenic | 40.0% | |
| TGGAGATGTTCCCTTAAATG+TGG | - | chr6_2:15994575-15994594 | None:intergenic | 40.0% | |
| ATTTAAGGGAACATCTCCAC+TGG | + | chr6_2:15994576-15994595 | Msa0910890:CDS | 40.0% | |
| !! | CTTGGTGTTATCAATTTGCC+AGG | + | chr6_2:15994673-15994692 | Msa0910890:intron | 40.0% |
| GTGTTATCAATTTGCCAGGA+TGG | + | chr6_2:15994677-15994696 | Msa0910890:intron | 40.0% | |
| TGGAATATCTGTAACCATCC+TGG | - | chr6_2:15994694-15994713 | None:intergenic | 40.0% | |
| AGGATGGTTACAGATATTCC+AGG | + | chr6_2:15994693-15994712 | Msa0910890:intron | 40.0% | |
| CTAACCAAAAGAGACATCTG+TGG | - | chr6_2:15994721-15994740 | None:intergenic | 40.0% | |
| TTGATCCTAGGATAGAGAGA+GGG | - | chr6_2:15994745-15994764 | None:intergenic | 40.0% | |
| ATTGATCCTAGGATAGAGAG+AGG | - | chr6_2:15994746-15994765 | None:intergenic | 40.0% | |
| TGATGCAGGAAATGAGATTG+TGG | + | chr6_2:15995117-15995136 | Msa0910890:intron | 40.0% | |
| TCATCTTGTTCAAGCAGAGA+AGG | + | chr6_2:15995185-15995204 | Msa0910890:CDS | 40.0% | |
| TTCTCACAGGAGAATAACCT+TGG | + | chr6_2:15995259-15995278 | Msa0910890:CDS | 40.0% | |
| TTGAAGTAAACTGCAGCAAC+AGG | - | chr6_2:15995289-15995308 | None:intergenic | 40.0% | |
| ATTACTCTTCCCACAGAAAG+TGG | - | chr6_2:15993831-15993850 | None:intergenic | 40.0% | |
| CTTTCTGTGGGAAGAGTAAT+AGG | + | chr6_2:15993831-15993850 | Msa0910890:CDS | 40.0% | |
| TCAACCAAGCAAGTTGCAAA+TGG | + | chr6_2:15993903-15993922 | Msa0910890:CDS | 40.0% | |
| ! | ATGACCATTTGCAACTTGCT+TGG | - | chr6_2:15993910-15993929 | None:intergenic | 40.0% |
| ! | GGTTTGTTCATAACAAGGGA+AGG | - | chr6_2:15993942-15993961 | None:intergenic | 40.0% |
| ! | CCCTTGTTATGAACAAACCA+AGG | + | chr6_2:15993943-15993962 | Msa0910890:CDS | 40.0% |
| !! | CCCTTGGTTTGTTCATAACA+AGG | - | chr6_2:15993947-15993966 | None:intergenic | 40.0% |
| !! | AAACCAAGGGTTGATATTGG+TGG | + | chr6_2:15993957-15993976 | Msa0910890:CDS | 40.0% |
| CAAAAGGCAAAGATGAGAAC+CGG | + | chr6_2:15994271-15994290 | Msa0910890:intron | 40.0% | |
| AAATGTGGATCACTAGGACT+AGG | - | chr6_2:15994560-15994579 | None:intergenic | 40.0% | |
| GTCCTAGTGATCCACATTTA+AGG | + | chr6_2:15994561-15994580 | Msa0910890:CDS | 40.0% | |
| TCCCTTAAATGTGGATCACT+AGG | - | chr6_2:15994566-15994585 | None:intergenic | 40.0% | |
| TGGAGATGTTCCCTTAAATG+TGG | - | chr6_2:15994575-15994594 | None:intergenic | 40.0% | |
| ATTTAAGGGAACATCTCCAC+TGG | + | chr6_2:15994576-15994595 | Msa0910890:CDS | 40.0% | |
| !! | CTTGGTGTTATCAATTTGCC+AGG | + | chr6_2:15994673-15994692 | Msa0910890:intron | 40.0% |
| GTGTTATCAATTTGCCAGGA+TGG | + | chr6_2:15994677-15994696 | Msa0910890:intron | 40.0% | |
| TGGAATATCTGTAACCATCC+TGG | - | chr6_2:15994694-15994713 | None:intergenic | 40.0% | |
| AGGATGGTTACAGATATTCC+AGG | + | chr6_2:15994693-15994712 | Msa0910890:intron | 40.0% | |
| CTAACCAAAAGAGACATCTG+TGG | - | chr6_2:15994721-15994740 | None:intergenic | 40.0% | |
| TTGATCCTAGGATAGAGAGA+GGG | - | chr6_2:15994745-15994764 | None:intergenic | 40.0% | |
| ATTGATCCTAGGATAGAGAG+AGG | - | chr6_2:15994746-15994765 | None:intergenic | 40.0% | |
| TGATGCAGGAAATGAGATTG+TGG | + | chr6_2:15995117-15995136 | Msa0910890:intron | 40.0% | |
| TCATCTTGTTCAAGCAGAGA+AGG | + | chr6_2:15995185-15995204 | Msa0910890:CDS | 40.0% | |
| TTCTCACAGGAGAATAACCT+TGG | + | chr6_2:15995259-15995278 | Msa0910890:CDS | 40.0% | |
| TTGAAGTAAACTGCAGCAAC+AGG | - | chr6_2:15995289-15995308 | None:intergenic | 40.0% | |
| CCATTGGAACCACTTTCTGT+GGG | + | chr6_2:15993819-15993838 | Msa0910890:CDS | 45.0% | |
| TCACCACCAATATCAACCCT+TGG | - | chr6_2:15993963-15993982 | None:intergenic | 45.0% | |
| ! | TAAACCGCAGTTGGTTCAAC+CGG | - | chr6_2:15994293-15994312 | None:intergenic | 45.0% |
| TAACCAGGTTAAACCGCAGT+TGG | - | chr6_2:15994302-15994321 | None:intergenic | 45.0% | |
| AAAGAGACATCTGTGGTACC+TGG | - | chr6_2:15994714-15994733 | None:intergenic | 45.0% | |
| ! | GGTACCACAGATGTCTCTTT+TGG | + | chr6_2:15994714-15994733 | Msa0910890:CDS | 45.0% |
| TTAGTCCCTCTCTCTATCCT+AGG | + | chr6_2:15994737-15994756 | Msa0910890:intron | 45.0% | |
| GAGAATCCAAAGCCAGTGAT+TGG | + | chr6_2:15995145-15995164 | Msa0910890:CDS | 45.0% | |
| !! | TGGATTCCAATCACTGGCTT+TGG | - | chr6_2:15995154-15995173 | None:intergenic | 45.0% |
| CAACACAAGGAGATTCTCAC+AGG | + | chr6_2:15995246-15995265 | Msa0910890:CDS | 45.0% | |
| GAGAAACTGCAGCAAGAAGA+AGG | + | chr6_2:15995317-15995336 | Msa0910890:CDS | 45.0% | |
| CCATTGGAACCACTTTCTGT+GGG | + | chr6_2:15993819-15993838 | Msa0910890:CDS | 45.0% | |
| TCACCACCAATATCAACCCT+TGG | - | chr6_2:15993963-15993982 | None:intergenic | 45.0% | |
| ! | TAAACCGCAGTTGGTTCAAC+CGG | - | chr6_2:15994293-15994312 | None:intergenic | 45.0% |
| TAACCAGGTTAAACCGCAGT+TGG | - | chr6_2:15994302-15994321 | None:intergenic | 45.0% | |
| AAAGAGACATCTGTGGTACC+TGG | - | chr6_2:15994714-15994733 | None:intergenic | 45.0% | |
| ! | GGTACCACAGATGTCTCTTT+TGG | + | chr6_2:15994714-15994733 | Msa0910890:CDS | 45.0% |
| TTAGTCCCTCTCTCTATCCT+AGG | + | chr6_2:15994737-15994756 | Msa0910890:intron | 45.0% | |
| GAGAATCCAAAGCCAGTGAT+TGG | + | chr6_2:15995145-15995164 | Msa0910890:CDS | 45.0% | |
| !! | TGGATTCCAATCACTGGCTT+TGG | - | chr6_2:15995154-15995173 | None:intergenic | 45.0% |
| CAACACAAGGAGATTCTCAC+AGG | + | chr6_2:15995246-15995265 | Msa0910890:CDS | 45.0% | |
| GAGAAACTGCAGCAAGAAGA+AGG | + | chr6_2:15995317-15995336 | Msa0910890:CDS | 45.0% | |
| !!! | ATAATTTAATTTTTTAACAA+AGG | + | chr6_2:15995084-15995103 | Msa0910890:intron | 5.0% |
| !!! | TAATTTAATTTTTTAACAAA+GGG | + | chr6_2:15995085-15995104 | Msa0910890:intron | 5.0% |
| !!! | ATAATTTAATTTTTTAACAA+AGG | + | chr6_2:15995084-15995103 | Msa0910890:intron | 5.0% |
| !!! | TAATTTAATTTTTTAACAAA+GGG | + | chr6_2:15995085-15995104 | Msa0910890:intron | 5.0% |
| GCCATTGGAACCACTTTCTG+TGG | + | chr6_2:15993818-15993837 | Msa0910890:CDS | 50.0% | |
| CCCACAGAAAGTGGTTCCAA+TGG | - | chr6_2:15993822-15993841 | None:intergenic | 50.0% | |
| AGAACCGGTTGAACCAACTG+CGG | + | chr6_2:15994286-15994305 | Msa0910890:intron | 50.0% | |
| GAACCAACTGCGGTTTAACC+TGG | + | chr6_2:15994296-15994315 | Msa0910890:intron | 50.0% | |
| !! | CACTAGGACTAGGAGCATCT+GGG | - | chr6_2:15994550-15994569 | None:intergenic | 50.0% |
| !! | TCACTAGGACTAGGAGCATC+TGG | - | chr6_2:15994551-15994570 | None:intergenic | 50.0% |
| CTGCAGCAACAGGTAAACCA+AGG | - | chr6_2:15995279-15995298 | None:intergenic | 50.0% | |
| GCCATTGGAACCACTTTCTG+TGG | + | chr6_2:15993818-15993837 | Msa0910890:CDS | 50.0% | |
| CCCACAGAAAGTGGTTCCAA+TGG | - | chr6_2:15993822-15993841 | None:intergenic | 50.0% | |
| AGAACCGGTTGAACCAACTG+CGG | + | chr6_2:15994286-15994305 | Msa0910890:intron | 50.0% | |
| GAACCAACTGCGGTTTAACC+TGG | + | chr6_2:15994296-15994315 | Msa0910890:intron | 50.0% | |
| !! | CACTAGGACTAGGAGCATCT+GGG | - | chr6_2:15994550-15994569 | None:intergenic | 50.0% |
| !! | TCACTAGGACTAGGAGCATC+TGG | - | chr6_2:15994551-15994570 | None:intergenic | 50.0% |
| CTGCAGCAACAGGTAAACCA+AGG | - | chr6_2:15995279-15995298 | None:intergenic | 50.0% | |
| GCGGGAAGCAGTAAGTTCCT+CGG | - | chr6_2:15994369-15994388 | None:intergenic | 55.0% | |
| GCGGGAAGCAGTAAGTTCCT+CGG | - | chr6_2:15994369-15994388 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 15993810 | 15995342 | 15993810 | ID=Msa0910890;Name=Msa0910890 |
| chr6_2 | mRNA | 15993810 | 15995342 | 15993810 | ID=Msa0910890-mRNA-1;Parent=Msa0910890;Name=Msa0910890-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|4|0|172 |
| chr6_2 | exon | 15993810 | 15994007 | 15993810 | ID=Msa0910890-mRNA-1:exon:3533;Parent=Msa0910890-mRNA-1 |
| chr6_2 | exon | 15994536 | 15994597 | 15994536 | ID=Msa0910890-mRNA-1:exon:3534;Parent=Msa0910890-mRNA-1 |
| chr6_2 | exon | 15994695 | 15994735 | 15994695 | ID=Msa0910890-mRNA-1:exon:3535;Parent=Msa0910890-mRNA-1 |
| chr6_2 | exon | 15995125 | 15995342 | 15995125 | ID=Msa0910890-mRNA-1:exon:3536;Parent=Msa0910890-mRNA-1 |
| chr6_2 | CDS | 15993810 | 15994007 | 15993810 | ID=Msa0910890-mRNA-1:cds;Parent=Msa0910890-mRNA-1 |
| chr6_2 | CDS | 15994536 | 15994597 | 15994536 | ID=Msa0910890-mRNA-1:cds;Parent=Msa0910890-mRNA-1 |
| chr6_2 | CDS | 15994695 | 15994735 | 15994695 | ID=Msa0910890-mRNA-1:cds;Parent=Msa0910890-mRNA-1 |
| chr6_2 | CDS | 15995125 | 15995342 | 15995125 | ID=Msa0910890-mRNA-1:cds;Parent=Msa0910890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
