Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992050 | XP_024630669.2 | 92.857 | 98 | 7 | 0 | 1 | 98 | 79 | 176 | 2.82e-62 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992050 | A0A396JWR6 | 92.708 | 96 | 7 | 0 | 1 | 96 | 1 | 96 | 2.77e-62 | 193 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0117710 | Msa0992050 | 0.803417 | 3.520771e-49 | -8.615850e-47 |
| Msa0766630 | Msa0992050 | 0.801096 | 1.057644e-48 | -8.615850e-47 |
| Msa0992050 | Msa0993780 | 0.984025 | 2.238299e-159 | -8.615850e-47 |
| Msa0992050 | Msa1136090 | 0.808569 | 2.903864e-50 | -8.615850e-47 |
| Msa0992050 | Msa1160670 | 0.802831 | 4.655891e-49 | -8.615850e-47 |
| Msa0992050 | Msa1284680 | 0.808610 | 2.845871e-50 | -8.615850e-47 |
| Msa0855760 | Msa0992050 | 0.821970 | 3.041517e-53 | -8.615850e-47 |
| Msa0929070 | Msa0992050 | 0.948997 | 3.091703e-107 | -8.615850e-47 |
| Msa0954910 | Msa0992050 | 0.805270 | 1.447827e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992050 | MtrunA17_Chr1g0174011 | 92.708 | 96 | 7 | 0 | 1 | 96 | 1 | 96 | 5.33e-66 | 193 |
| Msa0992050 | MtrunA17_Chr5g0434431 | 92.708 | 96 | 7 | 0 | 1 | 96 | 79 | 174 | 5.57e-65 | 193 |
| Msa0992050 | MtrunA17_Chr6g0469071 | 91.837 | 98 | 8 | 0 | 1 | 98 | 521 | 618 | 5.45e-62 | 198 |
| Msa0992050 | MtrunA17_Chr1g0153911 | 92.222 | 90 | 7 | 0 | 9 | 98 | 1 | 90 | 2.31e-60 | 179 |
| Msa0992050 | MtrunA17_Chr4g0033251 | 79.592 | 49 | 9 | 1 | 51 | 98 | 1 | 49 | 1.10e-22 | 82.8 |
| Msa0992050 | MtrunA17_Chr2g0321271 | 68.750 | 48 | 15 | 0 | 51 | 98 | 1 | 48 | 1.24e-17 | 70.1 |
| Msa0992050 | MtrunA17_Chr2g0325841 | 36.170 | 94 | 59 | 1 | 6 | 98 | 1105 | 1198 | 1.38e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCATTAGGTTGCTTTCT+TGG | 0.248489 | 6_4:-58818480 | None:intergenic |
| GCAATAGAAAGAAGGTTAAA+TGG | 0.271188 | 6_4:+58817650 | Msa0992050:CDS |
| TTGCTTGATGTGAGAATATA+AGG | 0.310732 | 6_4:-58816297 | None:intergenic |
| GTTAACATATAGAGCTTTAG+AGG | 0.328169 | 6_4:+58817609 | Msa0992050:intron |
| TCATTGCTTCATTAAGATCT+TGG | 0.330442 | 6_4:-58817488 | None:intergenic |
| TATAAGTCATCATCAGTTAA+TGG | 0.351177 | 6_4:-58818694 | None:intergenic |
| TCTTGACTTGTATAAGGCTT+AGG | 0.381448 | 6_4:+58818747 | Msa0992050:CDS |
| AGAGGTTCATCAACTTGCTC+AGG | 0.406730 | 6_4:+58817627 | Msa0992050:CDS |
| GACAACTAAACTATTGTCCT+TGG | 0.409668 | 6_4:-58817451 | None:intergenic |
| TATCCACAATCATTGCCATT+AGG | 0.411955 | 6_4:-58818492 | None:intergenic |
| TATACTTACTTATATAGATA+TGG | 0.415179 | 6_4:-58817330 | None:intergenic |
| CTGCTAATATTACTAAGTCT+TGG | 0.472781 | 6_4:+58818547 | Msa0992050:CDS |
| ATATGATTTGCGAAACCAAT+GGG | 0.486055 | 6_4:+58818714 | Msa0992050:CDS |
| TAGCCAAGAAAGCAACCTAA+TGG | 0.495668 | 6_4:+58818477 | Msa0992050:intron |
| CAACCTAATGGCAATGATTG+TGG | 0.497368 | 6_4:+58818489 | Msa0992050:CDS |
| TCATCATCAGTTAATGGCGT+TGG | 0.497730 | 6_4:-58818688 | None:intergenic |
| CAAGAAAACAAGTTGCCCAT+TGG | 0.504204 | 6_4:-58818729 | None:intergenic |
| GTTAATAATTATTTGTCCCA+AGG | 0.509187 | 6_4:+58817434 | Msa0992050:five_prime_UTR |
| ACAACTAAACTATTGTCCTT+GGG | 0.519949 | 6_4:-58817450 | None:intergenic |
| CTGATACTCCTTTCTCGTAC+AGG | 0.525727 | 6_4:-58816261 | None:intergenic |
| AGCAAGTATCAACTCAGATA+AGG | 0.542459 | 6_4:+58816315 | Msa0992050:five_prime_UTR |
| TGCTCAGGGCAATAGAAAGA+AGG | 0.550095 | 6_4:+58817642 | Msa0992050:CDS |
| GAGGTTCATCAACTTGCTCA+GGG | 0.558482 | 6_4:+58817628 | Msa0992050:CDS |
| GAGCACTACCTGTACGAGAA+AGG | 0.562293 | 6_4:+58816253 | Msa0992050:five_prime_UTR |
| TATATGATTTGCGAAACCAA+TGG | 0.577102 | 6_4:+58818713 | Msa0992050:CDS |
| TAATATTACTAAGTCTTGGA+TGG | 0.604101 | 6_4:+58818551 | Msa0992050:CDS |
| GATCTTGGTGCATTGAACAA+AGG | 0.604500 | 6_4:-58817473 | None:intergenic |
| TCTACGTGTGCAGAAGACAC+TGG | 0.621651 | 6_4:+58817409 | Msa0992050:intron |
| TATTACTAAGTCTTGGATGG+AGG | 0.643493 | 6_4:+58818554 | Msa0992050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTTTTAATTACATA+GGG | - | chr6_4:58817085-58817104 | None:intergenic | 10.0% |
| !!! | AAGTTTTTTTTTAATTACAT+AGG | - | chr6_4:58817086-58817105 | None:intergenic | 10.0% |
| !!! | GAAAGAGAATTTTTTTTTAT+TGG | + | chr6_4:58816782-58816801 | Msa0992050:intron | 15.0% |
| !!! | AAATTTGTTTCTTTACTTAT+TGG | + | chr6_4:58816875-58816894 | Msa0992050:intron | 15.0% |
| !! | TATACTTACTTATATAGATA+TGG | - | chr6_4:58817333-58817352 | None:intergenic | 15.0% |
| !!! | CTTTGATGATTTTTTTAATT+TGG | + | chr6_4:58817587-58817606 | Msa0992050:intron | 15.0% |
| !!! | AGAAGATTGTAAATTTTTTA+TGG | - | chr6_4:58817926-58817945 | None:intergenic | 15.0% |
| !! | TAAACTCAAATTATTTAGAA+AGG | + | chr6_4:58818152-58818171 | Msa0992050:intron | 15.0% |
| !! | AAACTCAAATTATTTAGAAA+GGG | + | chr6_4:58818153-58818172 | Msa0992050:intron | 15.0% |
| !! | GTATTATACAAAAGAATTAT+TGG | - | chr6_4:58818351-58818370 | None:intergenic | 15.0% |
| !! | AACTAATCACTTTATAAAAA+TGG | + | chr6_4:58818443-58818462 | Msa0992050:intron | 15.0% |
| !!! | GAATTTTTTGTAAATTGAGA+AGG | - | chr6_4:58816224-58816243 | None:intergenic | 20.0% |
| !!! | TATTTTGCATATTTTCAGTT+TGG | + | chr6_4:58816704-58816723 | Msa0992050:intron | 20.0% |
| !! | AAGATGTATCAATTTAGATT+AGG | + | chr6_4:58816836-58816855 | Msa0992050:intron | 20.0% |
| !!! | GTTTTAGTATTATGATCTTT+TGG | - | chr6_4:58817249-58817268 | None:intergenic | 20.0% |
| !! | TAATACTAAAACTAAAGTTC+AGG | + | chr6_4:58817257-58817276 | Msa0992050:intron | 20.0% |
| !! | AATACTAAAACTAAAGTTCA+GGG | + | chr6_4:58817258-58817277 | Msa0992050:intron | 20.0% |
| !! | TAATACAAGAAACAATCATA+CGG | - | chr6_4:58817733-58817752 | None:intergenic | 20.0% |
| !!! | ATTGTTTCTTGTATTAAAAG+TGG | + | chr6_4:58817737-58817756 | Msa0992050:intron | 20.0% |
| !!! | AGATTGTAAATTTTTTATGG+AGG | - | chr6_4:58817923-58817942 | None:intergenic | 20.0% |
| !!! | TAAACCTATATGTTTTCAAT+TGG | - | chr6_4:58817986-58818005 | None:intergenic | 20.0% |
| !! | AATTGAAAACATATAGGTTT+AGG | + | chr6_4:58817985-58818004 | Msa0992050:intron | 20.0% |
| !! | ATTGAAAACATATAGGTTTA+GGG | + | chr6_4:58817986-58818005 | Msa0992050:intron | 20.0% |
| !! | TAAAGTAAAAAAATTCACTG+AGG | + | chr6_4:58818184-58818203 | Msa0992050:intron | 20.0% |
| !! | TTTTTGTAAATTGAGAAGGA+CGG | - | chr6_4:58816220-58816239 | None:intergenic | 25.0% |
| ! | ATGCAAAATAAACTTTGACA+TGG | - | chr6_4:58816694-58816713 | None:intergenic | 25.0% |
| ! | ACAATCAAAAACAAAGAGTA+AGG | - | chr6_4:58816917-58816936 | None:intergenic | 25.0% |
| !!! | TTTAGTTTGTCTTCTTTTTC+AGG | + | chr6_4:58817053-58817072 | Msa0992050:intron | 25.0% |
| ! | ACGTAGAAGAACAATTATTA+AGG | - | chr6_4:58817396-58817415 | None:intergenic | 25.0% |
| ! | GTTAATAATTATTTGTCCCA+AGG | + | chr6_4:58817434-58817453 | Msa0992050:five_prime_UTR | 25.0% |
| !!! | GTTATACATTTTAGTGTTGT+AGG | - | chr6_4:58817568-58817587 | None:intergenic | 25.0% |
| ! | AAATATACAGGGAACAATTA+AGG | - | chr6_4:58817709-58817728 | None:intergenic | 25.0% |
| ! | AATCATACGGAAAATATACA+GGG | - | chr6_4:58817720-58817739 | None:intergenic | 25.0% |
| ! | GTAGTGAAACAATATAATCT+TGG | + | chr6_4:58817839-58817858 | Msa0992050:intron | 25.0% |
| !! | TAGCTTAATTGATTTAGTAG+TGG | - | chr6_4:58818058-58818077 | None:intergenic | 25.0% |
| ! | TAAAAAAATTCACTGAGGTA+CGG | + | chr6_4:58818189-58818208 | Msa0992050:intron | 25.0% |
| ! | TTGGTTAAGTAGTGTAAAAA+AGG | - | chr6_4:58818332-58818351 | None:intergenic | 25.0% |
| ! | TAATATTACTAAGTCTTGGA+TGG | + | chr6_4:58818551-58818570 | Msa0992050:CDS | 25.0% |
| ! | TATATTAACCTACACATTGT+AGG | + | chr6_4:58818654-58818673 | Msa0992050:intron | 25.0% |
| ! | TATAAGTCATCATCAGTTAA+TGG | - | chr6_4:58818697-58818716 | None:intergenic | 25.0% |
| !!! | TTGTTTTCTTGACTTGTATA+AGG | + | chr6_4:58818741-58818760 | Msa0992050:CDS | 25.0% |
| TTGCTTGATGTGAGAATATA+AGG | - | chr6_4:58816300-58816319 | None:intergenic | 30.0% | |
| !! | TGCTTGCTATGTTAAAATGT+GGG | + | chr6_4:58816631-58816650 | Msa0992050:intron | 30.0% |
| GAAACAAATTTCTACCACAA+TGG | - | chr6_4:58816866-58816885 | None:intergenic | 30.0% | |
| ATAAACAATATCAGCAGTCA+AGG | - | chr6_4:58816962-58816981 | None:intergenic | 30.0% | |
| AAAGAAGACAAACTAAACGT+CGG | - | chr6_4:58817050-58817069 | None:intergenic | 30.0% | |
| !! | ACAAATAGATCGAAAGTGTT+TGG | + | chr6_4:58817192-58817211 | Msa0992050:intron | 30.0% |
| !! | CAAATAGATCGAAAGTGTTT+GGG | + | chr6_4:58817193-58817212 | Msa0992050:intron | 30.0% |
| ACAACTAAACTATTGTCCTT+GGG | - | chr6_4:58817453-58817472 | None:intergenic | 30.0% | |
| TCATTGCTTCATTAAGATCT+TGG | - | chr6_4:58817491-58817510 | None:intergenic | 30.0% | |
| ! | GTTAACATATAGAGCTTTAG+AGG | + | chr6_4:58817609-58817628 | Msa0992050:intron | 30.0% |
| GCAATAGAAAGAAGGTTAAA+TGG | + | chr6_4:58817650-58817669 | Msa0992050:CDS | 30.0% | |
| ACAAGAACCATACTTACTTT+GGG | - | chr6_4:58817682-58817701 | None:intergenic | 30.0% | |
| AACAAGAACCATACTTACTT+TGG | - | chr6_4:58817683-58817702 | None:intergenic | 30.0% | |
| CAATCATACGGAAAATATAC+AGG | - | chr6_4:58817721-58817740 | None:intergenic | 30.0% | |
| GGAGGATAAACAAGAATAAA+AGG | - | chr6_4:58817905-58817924 | None:intergenic | 30.0% | |
| GTAGCCAATTGAAAACATAT+AGG | + | chr6_4:58817979-58817998 | Msa0992050:intron | 30.0% | |
| ATTATTTAGAAAGGGTAGTC+TGG | + | chr6_4:58818161-58818180 | Msa0992050:intron | 30.0% | |
| ! | TAGACTTAGCTTGATTACAT+TGG | + | chr6_4:58818216-58818235 | Msa0992050:intron | 30.0% |
| ACAACAGTATCTATTCATGA+AGG | - | chr6_4:58818373-58818392 | None:intergenic | 30.0% | |
| CTGCTAATATTACTAAGTCT+TGG | + | chr6_4:58818547-58818566 | Msa0992050:CDS | 30.0% | |
| ! | TATATGATTTGCGAAACCAA+TGG | + | chr6_4:58818713-58818732 | Msa0992050:CDS | 30.0% |
| ! | ATATGATTTGCGAAACCAAT+GGG | + | chr6_4:58818714-58818733 | Msa0992050:CDS | 30.0% |
| AGCAAGTATCAACTCAGATA+AGG | + | chr6_4:58816315-58816334 | Msa0992050:five_prime_UTR | 35.0% | |
| ! | TAGTCGATTTCCTTGAACAT+GGG | - | chr6_4:58816389-58816408 | None:intergenic | 35.0% |
| AGCAATACTTGAAACACACA+AGG | - | chr6_4:58816412-58816431 | None:intergenic | 35.0% | |
| ATAACTGTTCTGTGCTTTCA+CGG | + | chr6_4:58816569-58816588 | Msa0992050:intron | 35.0% | |
| !! | GTGCTTGCTATGTTAAAATG+TGG | + | chr6_4:58816630-58816649 | Msa0992050:intron | 35.0% |
| GATTGTCACATTGTGAATCT+CGG | + | chr6_4:58816931-58816950 | Msa0992050:intron | 35.0% | |
| !! | TTTTGGTTGATGCTGATGTT+AGG | + | chr6_4:58817013-58817032 | Msa0992050:intron | 35.0% |
| ! | TTTGGTTGATGCTGATGTTA+GGG | + | chr6_4:58817014-58817033 | Msa0992050:intron | 35.0% |
| AAGAAGACAAACTAAACGTC+GGG | - | chr6_4:58817049-58817068 | None:intergenic | 35.0% | |
| TATTTGTCGAGATACAGAGA+CGG | - | chr6_4:58817179-58817198 | None:intergenic | 35.0% | |
| !!! | ATCGAAAGTGTTTGGGATTT+TGG | + | chr6_4:58817200-58817219 | Msa0992050:intron | 35.0% |
| GACTAAAATCCAAGCATACT+GGG | - | chr6_4:58817227-58817246 | None:intergenic | 35.0% | |
| GACAACTAAACTATTGTCCT+TGG | - | chr6_4:58817454-58817473 | None:intergenic | 35.0% | |
| CCATGTGAATGTACAGTAAA+AGG | - | chr6_4:58817820-58817839 | None:intergenic | 35.0% | |
| ! | CCTTTTACTGTACATTCACA+TGG | + | chr6_4:58817817-58817836 | Msa0992050:intron | 35.0% |
| AAAGCAAATTGTTGTCACCA+AGG | + | chr6_4:58818010-58818029 | Msa0992050:intron | 35.0% | |
| AAGCAAATTGTTGTCACCAA+GGG | + | chr6_4:58818011-58818030 | Msa0992050:intron | 35.0% | |
| GATCTAACTCTGTTCTGTAT+GGG | - | chr6_4:58818251-58818270 | None:intergenic | 35.0% | |
| AGATCTAACTCTGTTCTGTA+TGG | - | chr6_4:58818252-58818271 | None:intergenic | 35.0% | |
| TACAGAACAGAGTTAGATCT+AGG | + | chr6_4:58818252-58818271 | Msa0992050:intron | 35.0% | |
| ! | AGATCTAGGATTCCATTACA+TGG | + | chr6_4:58818266-58818285 | Msa0992050:intron | 35.0% |
| TGCTTCTGCTTATAAAAAGC+TGG | + | chr6_4:58818296-58818315 | Msa0992050:intron | 35.0% | |
| CTTTCTTGGCTACAAATGAA+TGG | - | chr6_4:58818469-58818488 | None:intergenic | 35.0% | |
| TATCCACAATCATTGCCATT+AGG | - | chr6_4:58818495-58818514 | None:intergenic | 35.0% | |
| TATTACTAAGTCTTGGATGG+AGG | + | chr6_4:58818554-58818573 | Msa0992050:CDS | 35.0% | |
| ATTGAAGACCTACAATGTGT+AGG | - | chr6_4:58818665-58818684 | None:intergenic | 35.0% | |
| TCTCACTTCACCATGTATGT+TGG | + | chr6_4:58816355-58816374 | Msa0992050:intron | 40.0% | |
| ! | GTAGTCGATTTCCTTGAACA+TGG | - | chr6_4:58816390-58816409 | None:intergenic | 40.0% |
| TTTGTAAGCACAACAGTGGT+GGG | - | chr6_4:58816509-58816528 | None:intergenic | 40.0% | |
| ACACTTTGTAAGCACAACAG+TGG | - | chr6_4:58816513-58816532 | None:intergenic | 40.0% | |
| TAACTGTTCTGTGCTTTCAC+GGG | + | chr6_4:58816570-58816589 | Msa0992050:intron | 40.0% | |
| TTAGATTAGGAGCTCCATTG+TGG | + | chr6_4:58816849-58816868 | Msa0992050:intron | 40.0% | |
| ! | TCCAGCTCAATTCTCTCTTT+TGG | + | chr6_4:58816996-58817015 | Msa0992050:intron | 40.0% |
| ACCAAAAGAGAGAATTGAGC+TGG | - | chr6_4:58817000-58817019 | None:intergenic | 40.0% | |
| ! | TTGGTTGATGCTGATGTTAG+GGG | + | chr6_4:58817015-58817034 | Msa0992050:intron | 40.0% |
| AAAACTGTCACTGAGTATGG+TGG | - | chr6_4:58817111-58817130 | None:intergenic | 40.0% | |
| GCAAAAACTGTCACTGAGTA+TGG | - | chr6_4:58817114-58817133 | None:intergenic | 40.0% | |
| GGACTAAAATCCAAGCATAC+TGG | - | chr6_4:58817228-58817247 | None:intergenic | 40.0% | |
| TTCAGGGACACATACAAACT+AGG | + | chr6_4:58817274-58817293 | Msa0992050:intron | 40.0% | |
| ! | GATCTTGGTGCATTGAACAA+AGG | - | chr6_4:58817476-58817495 | None:intergenic | 40.0% |
| GTTTCGTCCCAAAGTAAGTA+TGG | + | chr6_4:58817672-58817691 | Msa0992050:intron | 40.0% | |
| AAGCATGTGAGTCCATGTAA+TGG | - | chr6_4:58818281-58818300 | None:intergenic | 40.0% | |
| TAGCCAAGAAAGCAACCTAA+TGG | + | chr6_4:58818477-58818496 | Msa0992050:intron | 40.0% | |
| ! | TTGCCATTAGGTTGCTTTCT+TGG | - | chr6_4:58818483-58818502 | None:intergenic | 40.0% |
| CAACCTAATGGCAATGATTG+TGG | + | chr6_4:58818489-58818508 | Msa0992050:CDS | 40.0% | |
| TCATCATCAGTTAATGGCGT+TGG | - | chr6_4:58818691-58818710 | None:intergenic | 40.0% | |
| CAAGAAAACAAGTTGCCCAT+TGG | - | chr6_4:58818732-58818751 | None:intergenic | 40.0% | |
| CTGATACTCCTTTCTCGTAC+AGG | - | chr6_4:58816264-58816283 | None:intergenic | 45.0% | |
| GGTAACTGCTCCAACATACA+TGG | - | chr6_4:58816368-58816387 | None:intergenic | 45.0% | |
| ! | AGTGGTGGGACTCAAAGAAA+TGG | - | chr6_4:58816495-58816514 | None:intergenic | 45.0% |
| CTTTGTAAGCACAACAGTGG+TGG | - | chr6_4:58816510-58816529 | None:intergenic | 45.0% | |
| AGATACGTATCCACCAGTCA+AGG | + | chr6_4:58816745-58816764 | Msa0992050:intron | 45.0% | |
| ! | GATTTTGGACCCAGTATGCT+TGG | + | chr6_4:58817215-58817234 | Msa0992050:intron | 45.0% |
| ! | AGAGGTTCATCAACTTGCTC+AGG | + | chr6_4:58817627-58817646 | Msa0992050:CDS | 45.0% |
| ! | GAGGTTCATCAACTTGCTCA+GGG | + | chr6_4:58817628-58817647 | Msa0992050:CDS | 45.0% |
| TGCTCAGGGCAATAGAAAGA+AGG | + | chr6_4:58817642-58817661 | Msa0992050:CDS | 45.0% | |
| CTAAGAAACGAACACACCCT+TGG | - | chr6_4:58818030-58818049 | None:intergenic | 45.0% | |
| !! | ATAAGTAATTAATATTAATA+AGG | - | chr6_4:58818637-58818656 | None:intergenic | 5.0% |
| GAGCACTACCTGTACGAGAA+AGG | + | chr6_4:58816253-58816272 | Msa0992050:five_prime_UTR | 50.0% | |
| GGAGCAGTTACCCATGTTCA+AGG | + | chr6_4:58816376-58816395 | Msa0992050:intron | 50.0% | |
| AAGTCGTGAACCTTGACTGG+TGG | - | chr6_4:58816758-58816777 | None:intergenic | 50.0% | |
| TCGAAGTCGTGAACCTTGAC+TGG | - | chr6_4:58816761-58816780 | None:intergenic | 50.0% | |
| TTGTCGAGATACAGAGACGG+AGG | - | chr6_4:58817176-58817195 | None:intergenic | 50.0% | |
| TCTACGTGTGCAGAAGACAC+TGG | + | chr6_4:58817409-58817428 | Msa0992050:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 58816182 | 58818768 | 58816182 | ID=Msa0992050;Name=Msa0992050 |
| chr6_4 | mRNA | 58816182 | 58818768 | 58816182 | ID=Msa0992050-mRNA-1;Parent=Msa0992050;Name=Msa0992050-mRNA-1;_AED=0.18;_eAED=0.18;_QI=257|0.66|0.57|0.71|0.5|0.42|7|0|98 |
| chr6_4 | exon | 58816182 | 58816336 | 58816182 | ID=Msa0992050-mRNA-1:exon:11623;Parent=Msa0992050-mRNA-1 |
| chr6_4 | exon | 58817075 | 58817087 | 58817075 | ID=Msa0992050-mRNA-1:exon:11624;Parent=Msa0992050-mRNA-1 |
| chr6_4 | exon | 58817316 | 58817343 | 58817316 | ID=Msa0992050-mRNA-1:exon:11625;Parent=Msa0992050-mRNA-1 |
| chr6_4 | exon | 58817422 | 58817526 | 58817422 | ID=Msa0992050-mRNA-1:exon:11626;Parent=Msa0992050-mRNA-1 |
| chr6_4 | exon | 58817621 | 58817684 | 58817621 | ID=Msa0992050-mRNA-1:exon:11627;Parent=Msa0992050-mRNA-1 |
| chr6_4 | exon | 58818480 | 58818575 | 58818480 | ID=Msa0992050-mRNA-1:exon:11628;Parent=Msa0992050-mRNA-1 |
| chr6_4 | exon | 58818676 | 58818768 | 58818676 | ID=Msa0992050-mRNA-1:exon:11629;Parent=Msa0992050-mRNA-1 |
| chr6_4 | five_prime_UTR | 58816182 | 58816336 | 58816182 | ID=Msa0992050-mRNA-1:five_prime_utr;Parent=Msa0992050-mRNA-1 |
| chr6_4 | five_prime_UTR | 58817075 | 58817087 | 58817075 | ID=Msa0992050-mRNA-1:five_prime_utr;Parent=Msa0992050-mRNA-1 |
| chr6_4 | five_prime_UTR | 58817316 | 58817343 | 58817316 | ID=Msa0992050-mRNA-1:five_prime_utr;Parent=Msa0992050-mRNA-1 |
| chr6_4 | five_prime_UTR | 58817422 | 58817482 | 58817422 | ID=Msa0992050-mRNA-1:five_prime_utr;Parent=Msa0992050-mRNA-1 |
| chr6_4 | CDS | 58817483 | 58817526 | 58817483 | ID=Msa0992050-mRNA-1:cds;Parent=Msa0992050-mRNA-1 |
| chr6_4 | CDS | 58817621 | 58817684 | 58817621 | ID=Msa0992050-mRNA-1:cds;Parent=Msa0992050-mRNA-1 |
| chr6_4 | CDS | 58818480 | 58818575 | 58818480 | ID=Msa0992050-mRNA-1:cds;Parent=Msa0992050-mRNA-1 |
| chr6_4 | CDS | 58818676 | 58818768 | 58818676 | ID=Msa0992050-mRNA-1:cds;Parent=Msa0992050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
