Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855760 | XP_039682589.1 | 90.909 | 121 | 11 | 0 | 22 | 142 | 56 | 176 | 1.38e-76 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855760 | A0A396I230 | 91.597 | 119 | 10 | 0 | 22 | 140 | 56 | 174 | 2.60e-76 | 233 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0079380 | Msa0855760 | 0.803221 | 3.866471e-49 | -8.615850e-47 |
| Msa0610840 | Msa0855760 | -0.802376 | 5.777775e-49 | -8.615850e-47 |
| Msa0681250 | Msa0855760 | 0.815290 | 9.970908e-52 | -8.615850e-47 |
| Msa0681270 | Msa0855760 | 0.812121 | 4.971483e-51 | -8.615850e-47 |
| Msa0766630 | Msa0855760 | 0.803789 | 2.948530e-49 | -8.615850e-47 |
| Msa0802830 | Msa0855760 | 0.808022 | 3.797888e-50 | -8.615850e-47 |
| Msa0820850 | Msa0855760 | 0.813333 | 2.699892e-51 | -8.615850e-47 |
| Msa0832340 | Msa0855760 | 0.810139 | 1.336895e-50 | -8.615850e-47 |
| Msa0211150 | Msa0855760 | 0.809027 | 2.317479e-50 | -8.615850e-47 |
| Msa0218240 | Msa0855760 | 0.800815 | 1.207369e-48 | -8.615850e-47 |
| Msa0407960 | Msa0855760 | 0.813680 | 2.263768e-51 | -8.615850e-47 |
| Msa0411390 | Msa0855760 | 0.803399 | 3.551907e-49 | -8.615850e-47 |
| Msa0434180 | Msa0855760 | 0.800637 | 1.312885e-48 | -8.615850e-47 |
| Msa0454360 | Msa0855760 | 0.803702 | 3.073632e-49 | -8.615850e-47 |
| Msa0455760 | Msa0855760 | 0.804119 | 2.517365e-49 | -8.615850e-47 |
| Msa0464680 | Msa0855760 | 0.804916 | 1.716736e-49 | -8.615850e-47 |
| Msa0280090 | Msa0855760 | 0.813681 | 2.263661e-51 | -8.615850e-47 |
| Msa0531180 | Msa0855760 | 0.809474 | 1.858668e-50 | -8.615850e-47 |
| Msa0855760 | Msa0861130 | 0.819043 | 1.428341e-52 | -8.615850e-47 |
| Msa0855760 | Msa0897330 | 0.802322 | 5.926903e-49 | -8.615850e-47 |
| Msa0855760 | Msa0901400 | 0.815312 | 9.861027e-52 | -8.615850e-47 |
| Msa0855760 | Msa0929070 | 0.824668 | 7.123746e-54 | -8.615850e-47 |
| Msa0855760 | Msa0935910 | 0.841035 | 6.065251e-58 | -8.615850e-47 |
| Msa0855760 | Msa0990680 | 0.811882 | 5.606103e-51 | -8.615850e-47 |
| Msa0855760 | Msa0992050 | 0.821970 | 3.041517e-53 | -8.615850e-47 |
| Msa0855760 | Msa0993780 | 0.819993 | 8.673944e-53 | -8.615850e-47 |
| Msa0855760 | Msa1004840 | 0.813820 | 2.109333e-51 | -8.615850e-47 |
| Msa0855760 | Msa1014540 | 0.821135 | 4.742792e-53 | -8.615850e-47 |
| Msa0855760 | Msa1016320 | 0.806022 | 1.006289e-49 | -8.615850e-47 |
| Msa0855760 | Msa1023950 | 0.828330 | 9.544694e-55 | -8.615850e-47 |
| Msa0855760 | Msa1075650 | 0.808675 | 2.756372e-50 | -8.615850e-47 |
| Msa0855760 | Msa1076700 | 0.803789 | 2.948083e-49 | -8.615850e-47 |
| Msa0855760 | Msa1083840 | 0.803685 | 3.098806e-49 | -8.615850e-47 |
| Msa0855760 | Msa1108760 | 0.810723 | 1.000279e-50 | -8.615850e-47 |
| Msa0855760 | Msa1174040 | 0.803410 | 3.532569e-49 | -8.615850e-47 |
| Msa0855760 | Msa1249490 | 0.804285 | 2.325221e-49 | -8.615850e-47 |
| Msa0855760 | Msa1253000 | 0.838003 | 3.721643e-57 | -8.615850e-47 |
| Msa0855760 | Msa1277660 | 0.805459 | 1.321139e-49 | -8.615850e-47 |
| Msa0855760 | Msa1284680 | 0.825231 | 5.247905e-54 | -8.615850e-47 |
| Msa0855760 | Msa1373030 | 0.807387 | 5.180989e-50 | -8.615850e-47 |
| Msa0855760 | Msa1466540 | 0.814624 | 1.401123e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855760 | MtrunA17_Chr5g0434431 | 91.597 | 119 | 10 | 0 | 22 | 140 | 56 | 174 | 5.01e-80 | 233 |
| Msa0855760 | MtrunA17_Chr6g0469071 | 90.909 | 121 | 11 | 0 | 22 | 142 | 498 | 618 | 3.97e-77 | 239 |
| Msa0855760 | MtrunA17_Chr1g0174011 | 93.750 | 96 | 6 | 0 | 45 | 140 | 1 | 96 | 3.06e-65 | 193 |
| Msa0855760 | MtrunA17_Chr1g0153911 | 93.333 | 90 | 6 | 0 | 53 | 142 | 1 | 90 | 1.10e-59 | 179 |
| Msa0855760 | MtrunA17_Chr2g0325841 | 40.336 | 119 | 70 | 1 | 25 | 142 | 1080 | 1198 | 1.50e-27 | 106 |
| Msa0855760 | MtrunA17_Chr4g0033251 | 81.633 | 49 | 8 | 1 | 95 | 142 | 1 | 49 | 5.27e-22 | 82.8 |
| Msa0855760 | MtrunA17_Chr2g0321271 | 66.667 | 48 | 16 | 0 | 95 | 142 | 1 | 48 | 8.46e-17 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCATTAGGTTGCTTTCT+TGG | 0.248489 | 5_4:-49678827 | None:intergenic |
| GCAATAGAAAGAAGGTTAAA+TGG | 0.271188 | 5_4:+49678376 | Msa0855760:CDS |
| GTTAACATATAGAGCTTTAG+AGG | 0.328169 | 5_4:+49678335 | Msa0855760:intron |
| TCATTGCTTCATTAAGATCT+TGG | 0.330442 | 5_4:-49678214 | None:intergenic |
| TTAAGTGAAGAGTTTGATAA+TGG | 0.345649 | 5_4:+49678007 | Msa0855760:CDS |
| TATAAGTCATCATCAGTTAA+TGG | 0.351177 | 5_4:-49679041 | None:intergenic |
| TCTTGACTTGTATAAGGCTT+AGG | 0.381448 | 5_4:+49679094 | Msa0855760:CDS |
| AGAGGTTCATCAACTTGCTC+AGG | 0.406730 | 5_4:+49678353 | Msa0855760:CDS |
| GACAACTAAACTATTGTCCT+TGG | 0.409668 | 5_4:-49678177 | None:intergenic |
| TATCCACAATCATTGCCATT+AGG | 0.411955 | 5_4:-49678839 | None:intergenic |
| CTGCTAATATTACTAAGTCT+TGG | 0.472781 | 5_4:+49678894 | Msa0855760:CDS |
| ATATGATTTGCGAAACCAAT+GGG | 0.486055 | 5_4:+49679061 | Msa0855760:CDS |
| TAGCCAAGAAAGCAACCTAA+TGG | 0.495668 | 5_4:+49678824 | Msa0855760:intron |
| CAACCTAATGGCAATGATTG+TGG | 0.497368 | 5_4:+49678836 | Msa0855760:CDS |
| TCATCATCAGTTAATGGCGT+TGG | 0.497730 | 5_4:-49679035 | None:intergenic |
| CAAGAAAACAAGTTGCCCAT+TGG | 0.504204 | 5_4:-49679076 | None:intergenic |
| GTTAATAATTATTTGTCCCA+AGG | 0.509187 | 5_4:+49678160 | Msa0855760:CDS |
| ACAACTAAACTATTGTCCTT+GGG | 0.519949 | 5_4:-49678176 | None:intergenic |
| GCGTCATTATGGATCGTAGT+TGG | 0.549424 | 5_4:+49677969 | None:intergenic |
| TGCTCAGGGCAATAGAAAGA+AGG | 0.550095 | 5_4:+49678368 | Msa0855760:CDS |
| GAGGTTCATCAACTTGCTCA+GGG | 0.558482 | 5_4:+49678354 | Msa0855760:CDS |
| TATATGATTTGCGAAACCAA+TGG | 0.577102 | 5_4:+49679060 | Msa0855760:CDS |
| TAATATTACTAAGTCTTGGA+TGG | 0.604101 | 5_4:+49678898 | Msa0855760:CDS |
| GATCTTGGTGCATTGAACAA+AGG | 0.604500 | 5_4:-49678199 | None:intergenic |
| TCTACGTGTGCAGAAGACAC+TGG | 0.621651 | 5_4:+49678135 | Msa0855760:intron |
| TATTACTAAGTCTTGGATGG+AGG | 0.643493 | 5_4:+49678901 | Msa0855760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTGATGATTTTTTTAATT+TGG | + | chr5_4:49678313-49678332 | Msa0855760:intron | 15.0% |
| !! | TAAACTCAAATTATTTAGAA+AGG | + | chr5_4:49678506-49678525 | Msa0855760:intron | 15.0% |
| !! | AAACTCAAATTATTTAGAAA+GGG | + | chr5_4:49678507-49678526 | Msa0855760:intron | 15.0% |
| !! | GTATTATACAAAAGAATTAT+TGG | - | chr5_4:49678700-49678719 | None:intergenic | 15.0% |
| !! | AACTAATCACTTTATAAAAA+TGG | + | chr5_4:49678790-49678809 | Msa0855760:intron | 15.0% |
| !!! | CTTTGATGATTTTTTTAATT+TGG | + | chr5_4:49678313-49678332 | Msa0855760:intron | 15.0% |
| !! | TAAACTCAAATTATTTAGAA+AGG | + | chr5_4:49678506-49678525 | Msa0855760:intron | 15.0% |
| !! | AAACTCAAATTATTTAGAAA+GGG | + | chr5_4:49678507-49678526 | Msa0855760:intron | 15.0% |
| !! | GTATTATACAAAAGAATTAT+TGG | - | chr5_4:49678700-49678719 | None:intergenic | 15.0% |
| !! | AACTAATCACTTTATAAAAA+TGG | + | chr5_4:49678790-49678809 | Msa0855760:intron | 15.0% |
| !! | TAATACAAGAAACAATCATA+CGG | - | chr5_4:49678459-49678478 | None:intergenic | 20.0% |
| !!! | ATTGTTTCTTGTATTAAAAG+TGG | + | chr5_4:49678463-49678482 | Msa0855760:intron | 20.0% |
| !! | TAAAGTAAAAAAATTCACTG+AGG | + | chr5_4:49678538-49678557 | Msa0855760:intron | 20.0% |
| !! | TAATACAAGAAACAATCATA+CGG | - | chr5_4:49678459-49678478 | None:intergenic | 20.0% |
| !!! | ATTGTTTCTTGTATTAAAAG+TGG | + | chr5_4:49678463-49678482 | Msa0855760:intron | 20.0% |
| !! | TAAAGTAAAAAAATTCACTG+AGG | + | chr5_4:49678538-49678557 | Msa0855760:intron | 20.0% |
| ! | TTAAGTGAAGAGTTTGATAA+TGG | + | chr5_4:49678007-49678026 | Msa0855760:CDS | 25.0% |
| ! | ACGTAGAAGAACAATTATTA+AGG | - | chr5_4:49678122-49678141 | None:intergenic | 25.0% |
| ! | GTTAATAATTATTTGTCCCA+AGG | + | chr5_4:49678160-49678179 | Msa0855760:CDS | 25.0% |
| !!! | GTTATACATTTTAGTGTTGT+AGG | - | chr5_4:49678294-49678313 | None:intergenic | 25.0% |
| ! | AAATATACAGGGAACAATTA+AGG | - | chr5_4:49678435-49678454 | None:intergenic | 25.0% |
| ! | AATCATACGGAAAATATACA+GGG | - | chr5_4:49678446-49678465 | None:intergenic | 25.0% |
| ! | TTGGTTAAGTAGTGTAAAAA+AGG | - | chr5_4:49678681-49678700 | None:intergenic | 25.0% |
| ! | TAATATTACTAAGTCTTGGA+TGG | + | chr5_4:49678898-49678917 | Msa0855760:CDS | 25.0% |
| ! | TATATTAACCTACACATTGT+AGG | + | chr5_4:49679001-49679020 | Msa0855760:intron | 25.0% |
| ! | TATAAGTCATCATCAGTTAA+TGG | - | chr5_4:49679044-49679063 | None:intergenic | 25.0% |
| !!! | TTGTTTTCTTGACTTGTATA+AGG | + | chr5_4:49679088-49679107 | Msa0855760:CDS | 25.0% |
| ! | TTAAGTGAAGAGTTTGATAA+TGG | + | chr5_4:49678007-49678026 | Msa0855760:CDS | 25.0% |
| ! | ACGTAGAAGAACAATTATTA+AGG | - | chr5_4:49678122-49678141 | None:intergenic | 25.0% |
| ! | GTTAATAATTATTTGTCCCA+AGG | + | chr5_4:49678160-49678179 | Msa0855760:CDS | 25.0% |
| !!! | GTTATACATTTTAGTGTTGT+AGG | - | chr5_4:49678294-49678313 | None:intergenic | 25.0% |
| ! | AAATATACAGGGAACAATTA+AGG | - | chr5_4:49678435-49678454 | None:intergenic | 25.0% |
| ! | AATCATACGGAAAATATACA+GGG | - | chr5_4:49678446-49678465 | None:intergenic | 25.0% |
| ! | TTGGTTAAGTAGTGTAAAAA+AGG | - | chr5_4:49678681-49678700 | None:intergenic | 25.0% |
| ! | TAATATTACTAAGTCTTGGA+TGG | + | chr5_4:49678898-49678917 | Msa0855760:CDS | 25.0% |
| ! | TATATTAACCTACACATTGT+AGG | + | chr5_4:49679001-49679020 | Msa0855760:intron | 25.0% |
| ! | TATAAGTCATCATCAGTTAA+TGG | - | chr5_4:49679044-49679063 | None:intergenic | 25.0% |
| !!! | TTGTTTTCTTGACTTGTATA+AGG | + | chr5_4:49679088-49679107 | Msa0855760:CDS | 25.0% |
| ACAACTAAACTATTGTCCTT+GGG | - | chr5_4:49678179-49678198 | None:intergenic | 30.0% | |
| TCATTGCTTCATTAAGATCT+TGG | - | chr5_4:49678217-49678236 | None:intergenic | 30.0% | |
| ! | GTTAACATATAGAGCTTTAG+AGG | + | chr5_4:49678335-49678354 | Msa0855760:intron | 30.0% |
| GCAATAGAAAGAAGGTTAAA+TGG | + | chr5_4:49678376-49678395 | Msa0855760:CDS | 30.0% | |
| ACAAGAACCATACTTACTTT+GGG | - | chr5_4:49678408-49678427 | None:intergenic | 30.0% | |
| AACAAGAACCATACTTACTT+TGG | - | chr5_4:49678409-49678428 | None:intergenic | 30.0% | |
| CAATCATACGGAAAATATAC+AGG | - | chr5_4:49678447-49678466 | None:intergenic | 30.0% | |
| ATTATTTAGAAAGGGTAGTC+TGG | + | chr5_4:49678515-49678534 | Msa0855760:intron | 30.0% | |
| ! | TAGACTTAGCTTGATTACAT+TGG | + | chr5_4:49678565-49678584 | Msa0855760:intron | 30.0% |
| ACAACAGTATCTATTCATGA+AGG | - | chr5_4:49678722-49678741 | None:intergenic | 30.0% | |
| CTGCTAATATTACTAAGTCT+TGG | + | chr5_4:49678894-49678913 | Msa0855760:CDS | 30.0% | |
| ! | TATATGATTTGCGAAACCAA+TGG | + | chr5_4:49679060-49679079 | Msa0855760:CDS | 30.0% |
| ! | ATATGATTTGCGAAACCAAT+GGG | + | chr5_4:49679061-49679080 | Msa0855760:CDS | 30.0% |
| ACAACTAAACTATTGTCCTT+GGG | - | chr5_4:49678179-49678198 | None:intergenic | 30.0% | |
| TCATTGCTTCATTAAGATCT+TGG | - | chr5_4:49678217-49678236 | None:intergenic | 30.0% | |
| ! | GTTAACATATAGAGCTTTAG+AGG | + | chr5_4:49678335-49678354 | Msa0855760:intron | 30.0% |
| GCAATAGAAAGAAGGTTAAA+TGG | + | chr5_4:49678376-49678395 | Msa0855760:CDS | 30.0% | |
| ACAAGAACCATACTTACTTT+GGG | - | chr5_4:49678408-49678427 | None:intergenic | 30.0% | |
| AACAAGAACCATACTTACTT+TGG | - | chr5_4:49678409-49678428 | None:intergenic | 30.0% | |
| CAATCATACGGAAAATATAC+AGG | - | chr5_4:49678447-49678466 | None:intergenic | 30.0% | |
| ATTATTTAGAAAGGGTAGTC+TGG | + | chr5_4:49678515-49678534 | Msa0855760:intron | 30.0% | |
| ! | TAGACTTAGCTTGATTACAT+TGG | + | chr5_4:49678565-49678584 | Msa0855760:intron | 30.0% |
| ACAACAGTATCTATTCATGA+AGG | - | chr5_4:49678722-49678741 | None:intergenic | 30.0% | |
| CTGCTAATATTACTAAGTCT+TGG | + | chr5_4:49678894-49678913 | Msa0855760:CDS | 30.0% | |
| ! | TATATGATTTGCGAAACCAA+TGG | + | chr5_4:49679060-49679079 | Msa0855760:CDS | 30.0% |
| ! | ATATGATTTGCGAAACCAAT+GGG | + | chr5_4:49679061-49679080 | Msa0855760:CDS | 30.0% |
| GACAACTAAACTATTGTCCT+TGG | - | chr5_4:49678180-49678199 | None:intergenic | 35.0% | |
| GATCTAACTCTGTTCTGTAT+GGG | - | chr5_4:49678600-49678619 | None:intergenic | 35.0% | |
| AGATCTAACTCTGTTCTGTA+TGG | - | chr5_4:49678601-49678620 | None:intergenic | 35.0% | |
| TACAGAACAGAGTTAGATCT+AGG | + | chr5_4:49678601-49678620 | Msa0855760:intron | 35.0% | |
| ! | AGATCTAGGATTCCATTACA+TGG | + | chr5_4:49678615-49678634 | Msa0855760:intron | 35.0% |
| TGCTTCTGCTTATAAAAAGC+TGG | + | chr5_4:49678645-49678664 | Msa0855760:intron | 35.0% | |
| CTTTCTTGGCTACAAATGAA+TGG | - | chr5_4:49678816-49678835 | None:intergenic | 35.0% | |
| TATCCACAATCATTGCCATT+AGG | - | chr5_4:49678842-49678861 | None:intergenic | 35.0% | |
| TATTACTAAGTCTTGGATGG+AGG | + | chr5_4:49678901-49678920 | Msa0855760:CDS | 35.0% | |
| ATTGAAGACCTACAATGTGT+AGG | - | chr5_4:49679012-49679031 | None:intergenic | 35.0% | |
| GACAACTAAACTATTGTCCT+TGG | - | chr5_4:49678180-49678199 | None:intergenic | 35.0% | |
| GATCTAACTCTGTTCTGTAT+GGG | - | chr5_4:49678600-49678619 | None:intergenic | 35.0% | |
| AGATCTAACTCTGTTCTGTA+TGG | - | chr5_4:49678601-49678620 | None:intergenic | 35.0% | |
| TACAGAACAGAGTTAGATCT+AGG | + | chr5_4:49678601-49678620 | Msa0855760:intron | 35.0% | |
| ! | AGATCTAGGATTCCATTACA+TGG | + | chr5_4:49678615-49678634 | Msa0855760:intron | 35.0% |
| TGCTTCTGCTTATAAAAAGC+TGG | + | chr5_4:49678645-49678664 | Msa0855760:intron | 35.0% | |
| CTTTCTTGGCTACAAATGAA+TGG | - | chr5_4:49678816-49678835 | None:intergenic | 35.0% | |
| TATCCACAATCATTGCCATT+AGG | - | chr5_4:49678842-49678861 | None:intergenic | 35.0% | |
| TATTACTAAGTCTTGGATGG+AGG | + | chr5_4:49678901-49678920 | Msa0855760:CDS | 35.0% | |
| ATTGAAGACCTACAATGTGT+AGG | - | chr5_4:49679012-49679031 | None:intergenic | 35.0% | |
| ! | GATCTTGGTGCATTGAACAA+AGG | - | chr5_4:49678202-49678221 | None:intergenic | 40.0% |
| GTTTCGTCCCAAAGTAAGTA+TGG | + | chr5_4:49678398-49678417 | Msa0855760:intron | 40.0% | |
| AAGCATGTGAGTCCATGTAA+TGG | - | chr5_4:49678630-49678649 | None:intergenic | 40.0% | |
| TAGCCAAGAAAGCAACCTAA+TGG | + | chr5_4:49678824-49678843 | Msa0855760:intron | 40.0% | |
| ! | TTGCCATTAGGTTGCTTTCT+TGG | - | chr5_4:49678830-49678849 | None:intergenic | 40.0% |
| CAACCTAATGGCAATGATTG+TGG | + | chr5_4:49678836-49678855 | Msa0855760:CDS | 40.0% | |
| TCATCATCAGTTAATGGCGT+TGG | - | chr5_4:49679038-49679057 | None:intergenic | 40.0% | |
| CAAGAAAACAAGTTGCCCAT+TGG | - | chr5_4:49679079-49679098 | None:intergenic | 40.0% | |
| ! | GATCTTGGTGCATTGAACAA+AGG | - | chr5_4:49678202-49678221 | None:intergenic | 40.0% |
| GTTTCGTCCCAAAGTAAGTA+TGG | + | chr5_4:49678398-49678417 | Msa0855760:intron | 40.0% | |
| AAGCATGTGAGTCCATGTAA+TGG | - | chr5_4:49678630-49678649 | None:intergenic | 40.0% | |
| TAGCCAAGAAAGCAACCTAA+TGG | + | chr5_4:49678824-49678843 | Msa0855760:intron | 40.0% | |
| ! | TTGCCATTAGGTTGCTTTCT+TGG | - | chr5_4:49678830-49678849 | None:intergenic | 40.0% |
| CAACCTAATGGCAATGATTG+TGG | + | chr5_4:49678836-49678855 | Msa0855760:CDS | 40.0% | |
| TCATCATCAGTTAATGGCGT+TGG | - | chr5_4:49679038-49679057 | None:intergenic | 40.0% | |
| CAAGAAAACAAGTTGCCCAT+TGG | - | chr5_4:49679079-49679098 | None:intergenic | 40.0% | |
| ! | AGAGGTTCATCAACTTGCTC+AGG | + | chr5_4:49678353-49678372 | Msa0855760:CDS | 45.0% |
| ! | GAGGTTCATCAACTTGCTCA+GGG | + | chr5_4:49678354-49678373 | Msa0855760:CDS | 45.0% |
| TGCTCAGGGCAATAGAAAGA+AGG | + | chr5_4:49678368-49678387 | Msa0855760:CDS | 45.0% | |
| ! | AGAGGTTCATCAACTTGCTC+AGG | + | chr5_4:49678353-49678372 | Msa0855760:CDS | 45.0% |
| ! | GAGGTTCATCAACTTGCTCA+GGG | + | chr5_4:49678354-49678373 | Msa0855760:CDS | 45.0% |
| TGCTCAGGGCAATAGAAAGA+AGG | + | chr5_4:49678368-49678387 | Msa0855760:CDS | 45.0% | |
| !! | ATAAGTAATTAATATTAATA+AGG | - | chr5_4:49678984-49679003 | None:intergenic | 5.0% |
| !! | ATAAGTAATTAATATTAATA+AGG | - | chr5_4:49678984-49679003 | None:intergenic | 5.0% |
| TCTACGTGTGCAGAAGACAC+TGG | + | chr5_4:49678135-49678154 | Msa0855760:intron | 50.0% | |
| TCTACGTGTGCAGAAGACAC+TGG | + | chr5_4:49678135-49678154 | Msa0855760:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 49677977 | 49679115 | 49677977 | ID=Msa0855760;Name=Msa0855760 |
| chr5_4 | mRNA | 49677977 | 49679115 | 49677977 | ID=Msa0855760-mRNA-1;Parent=Msa0855760;Name=Msa0855760-mRNA-1;_AED=0.60;_eAED=0.60;_QI=0|0.25|0.2|0.4|1|1|5|0|142 |
| chr5_4 | exon | 49677977 | 49678047 | 49677977 | ID=Msa0855760-mRNA-1:exon:15562;Parent=Msa0855760-mRNA-1 |
| chr5_4 | exon | 49678148 | 49678252 | 49678148 | ID=Msa0855760-mRNA-1:exon:15563;Parent=Msa0855760-mRNA-1 |
| chr5_4 | exon | 49678347 | 49678410 | 49678347 | ID=Msa0855760-mRNA-1:exon:15564;Parent=Msa0855760-mRNA-1 |
| chr5_4 | exon | 49678827 | 49678922 | 49678827 | ID=Msa0855760-mRNA-1:exon:15565;Parent=Msa0855760-mRNA-1 |
| chr5_4 | exon | 49679023 | 49679115 | 49679023 | ID=Msa0855760-mRNA-1:exon:15566;Parent=Msa0855760-mRNA-1 |
| chr5_4 | CDS | 49677977 | 49678047 | 49677977 | ID=Msa0855760-mRNA-1:cds;Parent=Msa0855760-mRNA-1 |
| chr5_4 | CDS | 49678148 | 49678252 | 49678148 | ID=Msa0855760-mRNA-1:cds;Parent=Msa0855760-mRNA-1 |
| chr5_4 | CDS | 49678347 | 49678410 | 49678347 | ID=Msa0855760-mRNA-1:cds;Parent=Msa0855760-mRNA-1 |
| chr5_4 | CDS | 49678827 | 49678922 | 49678827 | ID=Msa0855760-mRNA-1:cds;Parent=Msa0855760-mRNA-1 |
| chr5_4 | CDS | 49679023 | 49679115 | 49679023 | ID=Msa0855760-mRNA-1:cds;Parent=Msa0855760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
