Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993780 | XP_024630669.2 | 92.857 | 98 | 7 | 0 | 1 | 98 | 79 | 176 | 2.82e-62 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993780 | A0A396JWR6 | 92.708 | 96 | 7 | 0 | 1 | 96 | 1 | 96 | 2.77e-62 | 193 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0117710 | Msa0993780 | 0.803380 | 3.584587e-49 | -8.615850e-47 |
| Msa0766630 | Msa0993780 | 0.801392 | 9.200929e-49 | -8.615850e-47 |
| Msa0153910 | Msa0993780 | 0.802708 | 4.933960e-49 | -8.615850e-47 |
| Msa0992050 | Msa0993780 | 0.984025 | 2.238299e-159 | -8.615850e-47 |
| Msa0993780 | Msa1136090 | 0.808628 | 2.821315e-50 | -8.615850e-47 |
| Msa0993780 | Msa1160670 | 0.802065 | 6.693420e-49 | -8.615850e-47 |
| Msa0993780 | Msa1284680 | 0.810158 | 1.324673e-50 | -8.615850e-47 |
| Msa0855760 | Msa0993780 | 0.819993 | 8.673944e-53 | -8.615850e-47 |
| Msa0929070 | Msa0993780 | 0.960305 | 2.086391e-118 | -8.615850e-47 |
| Msa0954910 | Msa0993780 | 0.811325 | 7.407810e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993780 | MtrunA17_Chr1g0174011 | 92.708 | 96 | 7 | 0 | 1 | 96 | 1 | 96 | 5.33e-66 | 193 |
| Msa0993780 | MtrunA17_Chr5g0434431 | 92.708 | 96 | 7 | 0 | 1 | 96 | 79 | 174 | 5.57e-65 | 193 |
| Msa0993780 | MtrunA17_Chr6g0469071 | 91.837 | 98 | 8 | 0 | 1 | 98 | 521 | 618 | 5.45e-62 | 198 |
| Msa0993780 | MtrunA17_Chr1g0153911 | 92.222 | 90 | 7 | 0 | 9 | 98 | 1 | 90 | 2.31e-60 | 179 |
| Msa0993780 | MtrunA17_Chr4g0033251 | 79.592 | 49 | 9 | 1 | 51 | 98 | 1 | 49 | 1.10e-22 | 82.8 |
| Msa0993780 | MtrunA17_Chr2g0321271 | 68.750 | 48 | 15 | 0 | 51 | 98 | 1 | 48 | 1.24e-17 | 70.1 |
| Msa0993780 | MtrunA17_Chr2g0325841 | 36.170 | 94 | 59 | 1 | 6 | 98 | 1105 | 1198 | 1.38e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCATTAGGTTGCTTTCT+TGG | 0.248489 | 6_4:-66926106 | None:intergenic |
| GCAATAGAAAGAAGGTTAAA+TGG | 0.271188 | 6_4:+66925276 | Msa0993780:CDS |
| TTGCTTGATGTGAGAATATA+AGG | 0.310732 | 6_4:-66923923 | None:intergenic |
| GTTAACATATAGAGCTTTAG+AGG | 0.328169 | 6_4:+66925235 | Msa0993780:intron |
| TCATTGCTTCATTAAGATCT+TGG | 0.330442 | 6_4:-66925114 | None:intergenic |
| TATAAGTCATCATCAGTTAA+TGG | 0.351177 | 6_4:-66926320 | None:intergenic |
| TCTTGACTTGTATAAGGCTT+AGG | 0.381448 | 6_4:+66926373 | Msa0993780:CDS |
| AGAGGTTCATCAACTTGCTC+AGG | 0.406730 | 6_4:+66925253 | Msa0993780:CDS |
| GACAACTAAACTATTGTCCT+TGG | 0.409668 | 6_4:-66925077 | None:intergenic |
| TATCCACAATCATTGCCATT+AGG | 0.411955 | 6_4:-66926118 | None:intergenic |
| TATACTTACTTATATAGATA+TGG | 0.415179 | 6_4:-66924956 | None:intergenic |
| CTGCTAATATTACTAAGTCT+TGG | 0.472781 | 6_4:+66926173 | Msa0993780:CDS |
| ATATGATTTGCGAAACCAAT+GGG | 0.486055 | 6_4:+66926340 | Msa0993780:CDS |
| TAGCCAAGAAAGCAACCTAA+TGG | 0.495668 | 6_4:+66926103 | Msa0993780:intron |
| CAACCTAATGGCAATGATTG+TGG | 0.497368 | 6_4:+66926115 | Msa0993780:CDS |
| TCATCATCAGTTAATGGCGT+TGG | 0.497730 | 6_4:-66926314 | None:intergenic |
| CAAGAAAACAAGTTGCCCAT+TGG | 0.504204 | 6_4:-66926355 | None:intergenic |
| GTTAATAATTATTTGTCCCA+AGG | 0.509187 | 6_4:+66925060 | Msa0993780:five_prime_UTR |
| ACAACTAAACTATTGTCCTT+GGG | 0.519949 | 6_4:-66925076 | None:intergenic |
| CTGATACTCCTTTCTCGTAC+AGG | 0.525727 | 6_4:-66923887 | None:intergenic |
| AGCAAGTATCAACTCAGATA+AGG | 0.542459 | 6_4:+66923941 | Msa0993780:five_prime_UTR |
| TGCTCAGGGCAATAGAAAGA+AGG | 0.550095 | 6_4:+66925268 | Msa0993780:CDS |
| GAGGTTCATCAACTTGCTCA+GGG | 0.558482 | 6_4:+66925254 | Msa0993780:CDS |
| GAGCACTACCTGTACGAGAA+AGG | 0.562293 | 6_4:+66923879 | Msa0993780:five_prime_UTR |
| TATATGATTTGCGAAACCAA+TGG | 0.577102 | 6_4:+66926339 | Msa0993780:CDS |
| TAATATTACTAAGTCTTGGA+TGG | 0.604101 | 6_4:+66926177 | Msa0993780:CDS |
| GATCTTGGTGCATTGAACAA+AGG | 0.604500 | 6_4:-66925099 | None:intergenic |
| TCTACGTGTGCAGAAGACAC+TGG | 0.621651 | 6_4:+66925035 | Msa0993780:intron |
| TATTACTAAGTCTTGGATGG+AGG | 0.643493 | 6_4:+66926180 | Msa0993780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTTTTAATTACATA+GGG | - | chr6_4:66924711-66924730 | None:intergenic | 10.0% |
| !!! | AAGTTTTTTTTTAATTACAT+AGG | - | chr6_4:66924712-66924731 | None:intergenic | 10.0% |
| !!! | GAAAGAGAATTTTTTTTTAT+TGG | + | chr6_4:66924408-66924427 | Msa0993780:intron | 15.0% |
| !!! | AAATTTGTTTCTTTACTTAT+TGG | + | chr6_4:66924501-66924520 | Msa0993780:intron | 15.0% |
| !! | TATACTTACTTATATAGATA+TGG | - | chr6_4:66924959-66924978 | None:intergenic | 15.0% |
| !!! | CTTTGATGATTTTTTTAATT+TGG | + | chr6_4:66925213-66925232 | Msa0993780:intron | 15.0% |
| !!! | AGAAGATTGTAAATTTTTTA+TGG | - | chr6_4:66925552-66925571 | None:intergenic | 15.0% |
| !! | TAAACTCAAATTATTTAGAA+AGG | + | chr6_4:66925778-66925797 | Msa0993780:intron | 15.0% |
| !! | AAACTCAAATTATTTAGAAA+GGG | + | chr6_4:66925779-66925798 | Msa0993780:intron | 15.0% |
| !! | GTATTATACAAAAGAATTAT+TGG | - | chr6_4:66925977-66925996 | None:intergenic | 15.0% |
| !! | AACTAATCACTTTATAAAAA+TGG | + | chr6_4:66926069-66926088 | Msa0993780:intron | 15.0% |
| !!! | GAATTTTTTGTAAATTGAGA+AGG | - | chr6_4:66923850-66923869 | None:intergenic | 20.0% |
| !!! | TATTTTGCATATTTTCAGTT+TGG | + | chr6_4:66924330-66924349 | Msa0993780:intron | 20.0% |
| !! | AAGATGTATCAATTTAGATT+AGG | + | chr6_4:66924462-66924481 | Msa0993780:intron | 20.0% |
| !!! | GTTTTAGTATTATGATCTTT+TGG | - | chr6_4:66924875-66924894 | None:intergenic | 20.0% |
| !! | TAATACTAAAACTAAAGTTC+AGG | + | chr6_4:66924883-66924902 | Msa0993780:intron | 20.0% |
| !! | AATACTAAAACTAAAGTTCA+GGG | + | chr6_4:66924884-66924903 | Msa0993780:intron | 20.0% |
| !! | TAATACAAGAAACAATCATA+CGG | - | chr6_4:66925359-66925378 | None:intergenic | 20.0% |
| !!! | ATTGTTTCTTGTATTAAAAG+TGG | + | chr6_4:66925363-66925382 | Msa0993780:intron | 20.0% |
| !!! | AGATTGTAAATTTTTTATGG+AGG | - | chr6_4:66925549-66925568 | None:intergenic | 20.0% |
| !!! | TAAACCTATATGTTTTCAAT+TGG | - | chr6_4:66925612-66925631 | None:intergenic | 20.0% |
| !! | AATTGAAAACATATAGGTTT+AGG | + | chr6_4:66925611-66925630 | Msa0993780:intron | 20.0% |
| !! | ATTGAAAACATATAGGTTTA+GGG | + | chr6_4:66925612-66925631 | Msa0993780:intron | 20.0% |
| !! | TAAAGTAAAAAAATTCACTG+AGG | + | chr6_4:66925810-66925829 | Msa0993780:intron | 20.0% |
| !! | TTTTTGTAAATTGAGAAGGA+CGG | - | chr6_4:66923846-66923865 | None:intergenic | 25.0% |
| ! | ATGCAAAATAAACTTTGACA+TGG | - | chr6_4:66924320-66924339 | None:intergenic | 25.0% |
| ! | ACAATCAAAAACAAAGAGTA+AGG | - | chr6_4:66924543-66924562 | None:intergenic | 25.0% |
| !!! | TTTAGTTTGTCTTCTTTTTC+AGG | + | chr6_4:66924679-66924698 | Msa0993780:intron | 25.0% |
| ! | ACGTAGAAGAACAATTATTA+AGG | - | chr6_4:66925022-66925041 | None:intergenic | 25.0% |
| ! | GTTAATAATTATTTGTCCCA+AGG | + | chr6_4:66925060-66925079 | Msa0993780:five_prime_UTR | 25.0% |
| !!! | GTTATACATTTTAGTGTTGT+AGG | - | chr6_4:66925194-66925213 | None:intergenic | 25.0% |
| ! | AAATATACAGGGAACAATTA+AGG | - | chr6_4:66925335-66925354 | None:intergenic | 25.0% |
| ! | AATCATACGGAAAATATACA+GGG | - | chr6_4:66925346-66925365 | None:intergenic | 25.0% |
| ! | GTAGTGAAACAATATAATCT+TGG | + | chr6_4:66925465-66925484 | Msa0993780:intron | 25.0% |
| !! | TAGCTTAATTGATTTAGTAG+TGG | - | chr6_4:66925684-66925703 | None:intergenic | 25.0% |
| ! | TAAAAAAATTCACTGAGGTA+CGG | + | chr6_4:66925815-66925834 | Msa0993780:intron | 25.0% |
| ! | TTGGTTAAGTAGTGTAAAAA+AGG | - | chr6_4:66925958-66925977 | None:intergenic | 25.0% |
| ! | TAATATTACTAAGTCTTGGA+TGG | + | chr6_4:66926177-66926196 | Msa0993780:CDS | 25.0% |
| ! | TATATTAACCTACACATTGT+AGG | + | chr6_4:66926280-66926299 | Msa0993780:intron | 25.0% |
| ! | TATAAGTCATCATCAGTTAA+TGG | - | chr6_4:66926323-66926342 | None:intergenic | 25.0% |
| !!! | TTGTTTTCTTGACTTGTATA+AGG | + | chr6_4:66926367-66926386 | Msa0993780:CDS | 25.0% |
| TTGCTTGATGTGAGAATATA+AGG | - | chr6_4:66923926-66923945 | None:intergenic | 30.0% | |
| !! | TGCTTGCTATGTTAAAATGT+GGG | + | chr6_4:66924257-66924276 | Msa0993780:intron | 30.0% |
| GAAACAAATTTCTACCACAA+TGG | - | chr6_4:66924492-66924511 | None:intergenic | 30.0% | |
| ATAAACAATATCAGCAGTCA+AGG | - | chr6_4:66924588-66924607 | None:intergenic | 30.0% | |
| AAAGAAGACAAACTAAACGT+CGG | - | chr6_4:66924676-66924695 | None:intergenic | 30.0% | |
| !! | ACAAATAGATCGAAAGTGTT+TGG | + | chr6_4:66924818-66924837 | Msa0993780:intron | 30.0% |
| !! | CAAATAGATCGAAAGTGTTT+GGG | + | chr6_4:66924819-66924838 | Msa0993780:intron | 30.0% |
| ACAACTAAACTATTGTCCTT+GGG | - | chr6_4:66925079-66925098 | None:intergenic | 30.0% | |
| TCATTGCTTCATTAAGATCT+TGG | - | chr6_4:66925117-66925136 | None:intergenic | 30.0% | |
| ! | GTTAACATATAGAGCTTTAG+AGG | + | chr6_4:66925235-66925254 | Msa0993780:intron | 30.0% |
| GCAATAGAAAGAAGGTTAAA+TGG | + | chr6_4:66925276-66925295 | Msa0993780:CDS | 30.0% | |
| ACAAGAACCATACTTACTTT+GGG | - | chr6_4:66925308-66925327 | None:intergenic | 30.0% | |
| AACAAGAACCATACTTACTT+TGG | - | chr6_4:66925309-66925328 | None:intergenic | 30.0% | |
| CAATCATACGGAAAATATAC+AGG | - | chr6_4:66925347-66925366 | None:intergenic | 30.0% | |
| GGAGGATAAACAAGAATAAA+AGG | - | chr6_4:66925531-66925550 | None:intergenic | 30.0% | |
| GTAGCCAATTGAAAACATAT+AGG | + | chr6_4:66925605-66925624 | Msa0993780:intron | 30.0% | |
| ATTATTTAGAAAGGGTAGTC+TGG | + | chr6_4:66925787-66925806 | Msa0993780:intron | 30.0% | |
| ! | TAGACTTAGCTTGATTACAT+TGG | + | chr6_4:66925842-66925861 | Msa0993780:intron | 30.0% |
| ACAACAGTATCTATTCATGA+AGG | - | chr6_4:66925999-66926018 | None:intergenic | 30.0% | |
| CTGCTAATATTACTAAGTCT+TGG | + | chr6_4:66926173-66926192 | Msa0993780:CDS | 30.0% | |
| ! | TATATGATTTGCGAAACCAA+TGG | + | chr6_4:66926339-66926358 | Msa0993780:CDS | 30.0% |
| ! | ATATGATTTGCGAAACCAAT+GGG | + | chr6_4:66926340-66926359 | Msa0993780:CDS | 30.0% |
| AGCAAGTATCAACTCAGATA+AGG | + | chr6_4:66923941-66923960 | Msa0993780:five_prime_UTR | 35.0% | |
| ! | TAGTCGATTTCCTTGAACAT+GGG | - | chr6_4:66924015-66924034 | None:intergenic | 35.0% |
| AGCAATACTTGAAACACACA+AGG | - | chr6_4:66924038-66924057 | None:intergenic | 35.0% | |
| ATAACTGTTCTGTGCTTTCA+CGG | + | chr6_4:66924195-66924214 | Msa0993780:intron | 35.0% | |
| !! | GTGCTTGCTATGTTAAAATG+TGG | + | chr6_4:66924256-66924275 | Msa0993780:intron | 35.0% |
| GATTGTCACATTGTGAATCT+CGG | + | chr6_4:66924557-66924576 | Msa0993780:intron | 35.0% | |
| !! | TTTTGGTTGATGCTGATGTT+AGG | + | chr6_4:66924639-66924658 | Msa0993780:intron | 35.0% |
| ! | TTTGGTTGATGCTGATGTTA+GGG | + | chr6_4:66924640-66924659 | Msa0993780:intron | 35.0% |
| AAGAAGACAAACTAAACGTC+GGG | - | chr6_4:66924675-66924694 | None:intergenic | 35.0% | |
| TATTTGTCGAGATACAGAGA+CGG | - | chr6_4:66924805-66924824 | None:intergenic | 35.0% | |
| !!! | ATCGAAAGTGTTTGGGATTT+TGG | + | chr6_4:66924826-66924845 | Msa0993780:intron | 35.0% |
| GACTAAAATCCAAGCATACT+GGG | - | chr6_4:66924853-66924872 | None:intergenic | 35.0% | |
| GACAACTAAACTATTGTCCT+TGG | - | chr6_4:66925080-66925099 | None:intergenic | 35.0% | |
| CCATGTGAATGTACAGTAAA+AGG | - | chr6_4:66925446-66925465 | None:intergenic | 35.0% | |
| ! | CCTTTTACTGTACATTCACA+TGG | + | chr6_4:66925443-66925462 | Msa0993780:intron | 35.0% |
| AAAGCAAATTGTTGTCACCA+AGG | + | chr6_4:66925636-66925655 | Msa0993780:intron | 35.0% | |
| AAGCAAATTGTTGTCACCAA+GGG | + | chr6_4:66925637-66925656 | Msa0993780:intron | 35.0% | |
| GATCTAACTCTGTTCTGTAT+GGG | - | chr6_4:66925877-66925896 | None:intergenic | 35.0% | |
| AGATCTAACTCTGTTCTGTA+TGG | - | chr6_4:66925878-66925897 | None:intergenic | 35.0% | |
| TACAGAACAGAGTTAGATCT+AGG | + | chr6_4:66925878-66925897 | Msa0993780:intron | 35.0% | |
| ! | AGATCTAGGATTCCATTACA+TGG | + | chr6_4:66925892-66925911 | Msa0993780:intron | 35.0% |
| TGCTTCTGCTTATAAAAAGC+TGG | + | chr6_4:66925922-66925941 | Msa0993780:intron | 35.0% | |
| CTTTCTTGGCTACAAATGAA+TGG | - | chr6_4:66926095-66926114 | None:intergenic | 35.0% | |
| TATCCACAATCATTGCCATT+AGG | - | chr6_4:66926121-66926140 | None:intergenic | 35.0% | |
| TATTACTAAGTCTTGGATGG+AGG | + | chr6_4:66926180-66926199 | Msa0993780:CDS | 35.0% | |
| ATTGAAGACCTACAATGTGT+AGG | - | chr6_4:66926291-66926310 | None:intergenic | 35.0% | |
| TCTCACTTCACCATGTATGT+TGG | + | chr6_4:66923981-66924000 | Msa0993780:intron | 40.0% | |
| ! | GTAGTCGATTTCCTTGAACA+TGG | - | chr6_4:66924016-66924035 | None:intergenic | 40.0% |
| TTTGTAAGCACAACAGTGGT+GGG | - | chr6_4:66924135-66924154 | None:intergenic | 40.0% | |
| ACACTTTGTAAGCACAACAG+TGG | - | chr6_4:66924139-66924158 | None:intergenic | 40.0% | |
| TAACTGTTCTGTGCTTTCAC+GGG | + | chr6_4:66924196-66924215 | Msa0993780:intron | 40.0% | |
| TTAGATTAGGAGCTCCATTG+TGG | + | chr6_4:66924475-66924494 | Msa0993780:intron | 40.0% | |
| ! | TCCAGCTCAATTCTCTCTTT+TGG | + | chr6_4:66924622-66924641 | Msa0993780:intron | 40.0% |
| ACCAAAAGAGAGAATTGAGC+TGG | - | chr6_4:66924626-66924645 | None:intergenic | 40.0% | |
| ! | TTGGTTGATGCTGATGTTAG+GGG | + | chr6_4:66924641-66924660 | Msa0993780:intron | 40.0% |
| AAAACTGTCACTGAGTATGG+TGG | - | chr6_4:66924737-66924756 | None:intergenic | 40.0% | |
| GCAAAAACTGTCACTGAGTA+TGG | - | chr6_4:66924740-66924759 | None:intergenic | 40.0% | |
| GGACTAAAATCCAAGCATAC+TGG | - | chr6_4:66924854-66924873 | None:intergenic | 40.0% | |
| TTCAGGGACACATACAAACT+AGG | + | chr6_4:66924900-66924919 | Msa0993780:intron | 40.0% | |
| ! | GATCTTGGTGCATTGAACAA+AGG | - | chr6_4:66925102-66925121 | None:intergenic | 40.0% |
| GTTTCGTCCCAAAGTAAGTA+TGG | + | chr6_4:66925298-66925317 | Msa0993780:intron | 40.0% | |
| AAGCATGTGAGTCCATGTAA+TGG | - | chr6_4:66925907-66925926 | None:intergenic | 40.0% | |
| TAGCCAAGAAAGCAACCTAA+TGG | + | chr6_4:66926103-66926122 | Msa0993780:intron | 40.0% | |
| ! | TTGCCATTAGGTTGCTTTCT+TGG | - | chr6_4:66926109-66926128 | None:intergenic | 40.0% |
| CAACCTAATGGCAATGATTG+TGG | + | chr6_4:66926115-66926134 | Msa0993780:CDS | 40.0% | |
| TCATCATCAGTTAATGGCGT+TGG | - | chr6_4:66926317-66926336 | None:intergenic | 40.0% | |
| CAAGAAAACAAGTTGCCCAT+TGG | - | chr6_4:66926358-66926377 | None:intergenic | 40.0% | |
| CTGATACTCCTTTCTCGTAC+AGG | - | chr6_4:66923890-66923909 | None:intergenic | 45.0% | |
| GGTAACTGCTCCAACATACA+TGG | - | chr6_4:66923994-66924013 | None:intergenic | 45.0% | |
| ! | AGTGGTGGGACTCAAAGAAA+TGG | - | chr6_4:66924121-66924140 | None:intergenic | 45.0% |
| CTTTGTAAGCACAACAGTGG+TGG | - | chr6_4:66924136-66924155 | None:intergenic | 45.0% | |
| AGATACGTATCCACCAGTCA+AGG | + | chr6_4:66924371-66924390 | Msa0993780:intron | 45.0% | |
| ! | GATTTTGGACCCAGTATGCT+TGG | + | chr6_4:66924841-66924860 | Msa0993780:intron | 45.0% |
| ! | AGAGGTTCATCAACTTGCTC+AGG | + | chr6_4:66925253-66925272 | Msa0993780:CDS | 45.0% |
| ! | GAGGTTCATCAACTTGCTCA+GGG | + | chr6_4:66925254-66925273 | Msa0993780:CDS | 45.0% |
| TGCTCAGGGCAATAGAAAGA+AGG | + | chr6_4:66925268-66925287 | Msa0993780:CDS | 45.0% | |
| CTAAGAAACGAACACACCCT+TGG | - | chr6_4:66925656-66925675 | None:intergenic | 45.0% | |
| !! | ATAAGTAATTAATATTAATA+AGG | - | chr6_4:66926263-66926282 | None:intergenic | 5.0% |
| GAGCACTACCTGTACGAGAA+AGG | + | chr6_4:66923879-66923898 | Msa0993780:five_prime_UTR | 50.0% | |
| GGAGCAGTTACCCATGTTCA+AGG | + | chr6_4:66924002-66924021 | Msa0993780:intron | 50.0% | |
| AAGTCGTGAACCTTGACTGG+TGG | - | chr6_4:66924384-66924403 | None:intergenic | 50.0% | |
| TCGAAGTCGTGAACCTTGAC+TGG | - | chr6_4:66924387-66924406 | None:intergenic | 50.0% | |
| TTGTCGAGATACAGAGACGG+AGG | - | chr6_4:66924802-66924821 | None:intergenic | 50.0% | |
| TCTACGTGTGCAGAAGACAC+TGG | + | chr6_4:66925035-66925054 | Msa0993780:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 66923808 | 66926394 | 66923808 | ID=Msa0993780;Name=Msa0993780 |
| chr6_4 | mRNA | 66923808 | 66926394 | 66923808 | ID=Msa0993780-mRNA-1;Parent=Msa0993780;Name=Msa0993780-mRNA-1;_AED=0.18;_eAED=0.18;_QI=257|0.66|0.57|0.71|0.5|0.42|7|0|98 |
| chr6_4 | exon | 66923808 | 66923962 | 66923808 | ID=Msa0993780-mRNA-1:exon:12468;Parent=Msa0993780-mRNA-1 |
| chr6_4 | exon | 66924701 | 66924713 | 66924701 | ID=Msa0993780-mRNA-1:exon:12469;Parent=Msa0993780-mRNA-1 |
| chr6_4 | exon | 66924942 | 66924969 | 66924942 | ID=Msa0993780-mRNA-1:exon:12470;Parent=Msa0993780-mRNA-1 |
| chr6_4 | exon | 66925048 | 66925152 | 66925048 | ID=Msa0993780-mRNA-1:exon:12471;Parent=Msa0993780-mRNA-1 |
| chr6_4 | exon | 66925247 | 66925310 | 66925247 | ID=Msa0993780-mRNA-1:exon:12472;Parent=Msa0993780-mRNA-1 |
| chr6_4 | exon | 66926106 | 66926201 | 66926106 | ID=Msa0993780-mRNA-1:exon:12473;Parent=Msa0993780-mRNA-1 |
| chr6_4 | exon | 66926302 | 66926394 | 66926302 | ID=Msa0993780-mRNA-1:exon:12474;Parent=Msa0993780-mRNA-1 |
| chr6_4 | five_prime_UTR | 66923808 | 66923962 | 66923808 | ID=Msa0993780-mRNA-1:five_prime_utr;Parent=Msa0993780-mRNA-1 |
| chr6_4 | five_prime_UTR | 66924701 | 66924713 | 66924701 | ID=Msa0993780-mRNA-1:five_prime_utr;Parent=Msa0993780-mRNA-1 |
| chr6_4 | five_prime_UTR | 66924942 | 66924969 | 66924942 | ID=Msa0993780-mRNA-1:five_prime_utr;Parent=Msa0993780-mRNA-1 |
| chr6_4 | five_prime_UTR | 66925048 | 66925108 | 66925048 | ID=Msa0993780-mRNA-1:five_prime_utr;Parent=Msa0993780-mRNA-1 |
| chr6_4 | CDS | 66925109 | 66925152 | 66925109 | ID=Msa0993780-mRNA-1:cds;Parent=Msa0993780-mRNA-1 |
| chr6_4 | CDS | 66925247 | 66925310 | 66925247 | ID=Msa0993780-mRNA-1:cds;Parent=Msa0993780-mRNA-1 |
| chr6_4 | CDS | 66926106 | 66926201 | 66926106 | ID=Msa0993780-mRNA-1:cds;Parent=Msa0993780-mRNA-1 |
| chr6_4 | CDS | 66926302 | 66926394 | 66926302 | ID=Msa0993780-mRNA-1:cds;Parent=Msa0993780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
