Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929070 | XP_024630669.2 | 92.857 | 98 | 7 | 0 | 1 | 98 | 79 | 176 | 2.82e-62 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0117710 | Msa0929070 | 0.800016 | 1.756480e-48 | -8.615850e-47 |
| Msa0766630 | Msa0929070 | 0.802253 | 6.125247e-49 | -8.615850e-47 |
| Msa0855760 | Msa0929070 | 0.824668 | 7.123746e-54 | -8.615850e-47 |
| Msa0929070 | Msa0954910 | 0.812516 | 4.076404e-51 | -8.615850e-47 |
| Msa0929070 | Msa0992050 | 0.948997 | 3.091703e-107 | -8.615850e-47 |
| Msa0929070 | Msa0993780 | 0.960305 | 2.086391e-118 | -8.615850e-47 |
| Msa0929070 | Msa1160670 | 0.800270 | 1.559233e-48 | -8.615850e-47 |
| Msa0929070 | Msa1284680 | 0.804635 | 1.965610e-49 | -8.615850e-47 |
| Msa0929070 | Msa1424290 | 0.800092 | 1.695256e-48 | -8.615850e-47 |
| Msa0929070 | Msa1434350 | 0.801203 | 1.005842e-48 | -8.615850e-47 |
| Msa0929070 | Msa1439320 | 0.800041 | 1.736178e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929070 | MtrunA17_Chr1g0174011 | 92.708 | 96 | 7 | 0 | 1 | 96 | 1 | 96 | 5.33e-66 | 193 |
| Msa0929070 | MtrunA17_Chr5g0434431 | 92.708 | 96 | 7 | 0 | 1 | 96 | 79 | 174 | 5.57e-65 | 193 |
| Msa0929070 | MtrunA17_Chr6g0469071 | 91.837 | 98 | 8 | 0 | 1 | 98 | 521 | 618 | 5.45e-62 | 198 |
| Msa0929070 | MtrunA17_Chr1g0153911 | 92.222 | 90 | 7 | 0 | 9 | 98 | 1 | 90 | 2.31e-60 | 179 |
| Msa0929070 | MtrunA17_Chr4g0033251 | 79.592 | 49 | 9 | 1 | 51 | 98 | 1 | 49 | 1.10e-22 | 82.8 |
| Msa0929070 | MtrunA17_Chr2g0321271 | 68.750 | 48 | 15 | 0 | 51 | 98 | 1 | 48 | 1.24e-17 | 70.1 |
| Msa0929070 | MtrunA17_Chr2g0325841 | 36.170 | 94 | 59 | 1 | 6 | 98 | 1105 | 1198 | 1.38e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCATTAGGTTGCTTTCT+TGG | 0.248489 | 6_2:+76284476 | None:intergenic |
| GCAATAGAAAGAAGGTTAAA+TGG | 0.271188 | 6_2:-76285306 | Msa0929070:CDS |
| TTGCTTGATGTGAGAATATA+AGG | 0.310732 | 6_2:+76286659 | None:intergenic |
| GTTAACATATAGAGCTTTAG+AGG | 0.328169 | 6_2:-76285347 | Msa0929070:intron |
| TCATTGCTTCATTAAGATCT+TGG | 0.330442 | 6_2:+76285468 | None:intergenic |
| TATAAGTCATCATCAGTTAA+TGG | 0.351177 | 6_2:+76284262 | None:intergenic |
| TCTTGACTTGTATAAGGCTT+AGG | 0.381448 | 6_2:-76284209 | None:intergenic |
| AGAGGTTCATCAACTTGCTC+AGG | 0.406730 | 6_2:-76285329 | Msa0929070:CDS |
| GACAACTAAACTATTGTCCT+TGG | 0.409668 | 6_2:+76285505 | None:intergenic |
| TATCCACAATCATTGCCATT+AGG | 0.411955 | 6_2:+76284464 | None:intergenic |
| TATACTTACTTATATAGATA+TGG | 0.415179 | 6_2:+76285626 | None:intergenic |
| CTGCTAATATTACTAAGTCT+TGG | 0.472781 | 6_2:-76284409 | Msa0929070:CDS |
| ATATGATTTGCGAAACCAAT+GGG | 0.486055 | 6_2:-76284242 | Msa0929070:CDS |
| TAGCCAAGAAAGCAACCTAA+TGG | 0.495668 | 6_2:-76284479 | Msa0929070:CDS |
| CAACCTAATGGCAATGATTG+TGG | 0.497368 | 6_2:-76284467 | Msa0929070:CDS |
| TCATCATCAGTTAATGGCGT+TGG | 0.497730 | 6_2:+76284268 | None:intergenic |
| CAAGAAAACAAGTTGCCCAT+TGG | 0.504204 | 6_2:+76284227 | None:intergenic |
| GTTAATAATTATTTGTCCCA+AGG | 0.509187 | 6_2:-76285522 | Msa0929070:five_prime_UTR |
| ACAACTAAACTATTGTCCTT+GGG | 0.519949 | 6_2:+76285506 | None:intergenic |
| CTGATACTCCTTTCTCGTAC+AGG | 0.525727 | 6_2:+76286695 | None:intergenic |
| AGCAAGTATCAACTCAGATA+AGG | 0.542459 | 6_2:-76286641 | Msa0929070:intron |
| TGCTCAGGGCAATAGAAAGA+AGG | 0.550095 | 6_2:-76285314 | Msa0929070:CDS |
| GAGGTTCATCAACTTGCTCA+GGG | 0.558482 | 6_2:-76285328 | Msa0929070:CDS |
| GAGCACTACCTGTACGAGAA+AGG | 0.562293 | 6_2:-76286703 | Msa0929070:five_prime_UTR |
| TATATGATTTGCGAAACCAA+TGG | 0.577102 | 6_2:-76284243 | Msa0929070:CDS |
| TAATATTACTAAGTCTTGGA+TGG | 0.604101 | 6_2:-76284405 | Msa0929070:CDS |
| GATCTTGGTGCATTGAACAA+AGG | 0.604500 | 6_2:+76285483 | None:intergenic |
| TCTACGTGTGCAGAAGACAC+TGG | 0.621651 | 6_2:-76285547 | Msa0929070:intron |
| TATTACTAAGTCTTGGATGG+AGG | 0.643493 | 6_2:-76284402 | Msa0929070:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTTTTAATTACATA+GGG | + | chr6_2:76285113-76285132 | None:intergenic | 10.0% |
| !!! | AAGTTTTTTTTTAATTACAT+AGG | + | chr6_2:76285114-76285133 | None:intergenic | 10.0% |
| !!! | GAAAGAGAATTTTTTTTTAT+TGG | - | chr6_2:76284810-76284829 | Msa0929070:intron | 15.0% |
| !!! | AAATTTGTTTCTTTACTTAT+TGG | - | chr6_2:76284903-76284922 | Msa0929070:intron | 15.0% |
| !! | TATACTTACTTATATAGATA+TGG | + | chr6_2:76285361-76285380 | None:intergenic | 15.0% |
| !!! | CTTTGATGATTTTTTTAATT+TGG | - | chr6_2:76285615-76285634 | Msa0929070:intron | 15.0% |
| !!! | AGAAGATTGTAAATTTTTTA+TGG | + | chr6_2:76285954-76285973 | None:intergenic | 15.0% |
| !! | TAAACTCAAATTATTTAGAA+AGG | - | chr6_2:76286180-76286199 | Msa0929070:intron | 15.0% |
| !! | AAACTCAAATTATTTAGAAA+GGG | - | chr6_2:76286181-76286200 | Msa0929070:intron | 15.0% |
| !! | GTATTATACAAAAGAATTAT+TGG | + | chr6_2:76286379-76286398 | None:intergenic | 15.0% |
| !! | AACTAATCACTTTATAAAAA+TGG | - | chr6_2:76286471-76286490 | Msa0929070:intron | 15.0% |
| !!! | GAATTTTTTGTAAATTGAGA+AGG | + | chr6_2:76284252-76284271 | None:intergenic | 20.0% |
| !!! | TATTTTGCATATTTTCAGTT+TGG | - | chr6_2:76284732-76284751 | Msa0929070:intron | 20.0% |
| !! | AAGATGTATCAATTTAGATT+AGG | - | chr6_2:76284864-76284883 | Msa0929070:intron | 20.0% |
| !!! | GTTTTAGTATTATGATCTTT+TGG | + | chr6_2:76285277-76285296 | None:intergenic | 20.0% |
| !! | TAATACTAAAACTAAAGTTC+AGG | - | chr6_2:76285285-76285304 | Msa0929070:intron | 20.0% |
| !! | AATACTAAAACTAAAGTTCA+GGG | - | chr6_2:76285286-76285305 | Msa0929070:intron | 20.0% |
| !! | TAATACAAGAAACAATCATA+CGG | + | chr6_2:76285761-76285780 | None:intergenic | 20.0% |
| !!! | ATTGTTTCTTGTATTAAAAG+TGG | - | chr6_2:76285765-76285784 | Msa0929070:intron | 20.0% |
| !!! | AGATTGTAAATTTTTTATGG+AGG | + | chr6_2:76285951-76285970 | None:intergenic | 20.0% |
| !!! | TAAACCTATATGTTTTCAAT+TGG | + | chr6_2:76286014-76286033 | None:intergenic | 20.0% |
| !! | AATTGAAAACATATAGGTTT+AGG | - | chr6_2:76286013-76286032 | Msa0929070:intron | 20.0% |
| !! | ATTGAAAACATATAGGTTTA+GGG | - | chr6_2:76286014-76286033 | Msa0929070:intron | 20.0% |
| !! | TAAAGTAAAAAAATTCACTG+AGG | - | chr6_2:76286212-76286231 | Msa0929070:intron | 20.0% |
| !! | TTTTTGTAAATTGAGAAGGA+CGG | + | chr6_2:76284248-76284267 | None:intergenic | 25.0% |
| ! | ATGCAAAATAAACTTTGACA+TGG | + | chr6_2:76284722-76284741 | None:intergenic | 25.0% |
| ! | ACAATCAAAAACAAAGAGTA+AGG | + | chr6_2:76284945-76284964 | None:intergenic | 25.0% |
| !!! | TTTAGTTTGTCTTCTTTTTC+AGG | - | chr6_2:76285081-76285100 | Msa0929070:intron | 25.0% |
| ! | ACGTAGAAGAACAATTATTA+AGG | + | chr6_2:76285424-76285443 | None:intergenic | 25.0% |
| ! | GTTAATAATTATTTGTCCCA+AGG | - | chr6_2:76285462-76285481 | Msa0929070:CDS | 25.0% |
| !!! | GTTATACATTTTAGTGTTGT+AGG | + | chr6_2:76285596-76285615 | None:intergenic | 25.0% |
| ! | AAATATACAGGGAACAATTA+AGG | + | chr6_2:76285737-76285756 | None:intergenic | 25.0% |
| ! | AATCATACGGAAAATATACA+GGG | + | chr6_2:76285748-76285767 | None:intergenic | 25.0% |
| ! | GTAGTGAAACAATATAATCT+TGG | - | chr6_2:76285867-76285886 | Msa0929070:intron | 25.0% |
| !! | TAGCTTAATTGATTTAGTAG+TGG | + | chr6_2:76286086-76286105 | None:intergenic | 25.0% |
| ! | TAAAAAAATTCACTGAGGTA+CGG | - | chr6_2:76286217-76286236 | Msa0929070:intron | 25.0% |
| ! | TTGGTTAAGTAGTGTAAAAA+AGG | + | chr6_2:76286360-76286379 | None:intergenic | 25.0% |
| ! | TAATATTACTAAGTCTTGGA+TGG | - | chr6_2:76286579-76286598 | Msa0929070:intron | 25.0% |
| ! | TATATTAACCTACACATTGT+AGG | - | chr6_2:76286682-76286701 | Msa0929070:five_prime_UTR | 25.0% |
| ! | TATAAGTCATCATCAGTTAA+TGG | + | chr6_2:76286725-76286744 | None:intergenic | 25.0% |
| !!! | TTGTTTTCTTGACTTGTATA+AGG | - | chr6_2:76286769-76286788 | Msa0929070:five_prime_UTR | 25.0% |
| TTGCTTGATGTGAGAATATA+AGG | + | chr6_2:76284328-76284347 | None:intergenic | 30.0% | |
| !! | TGCTTGCTATGTTAAAATGT+GGG | - | chr6_2:76284659-76284678 | Msa0929070:intron | 30.0% |
| GAAACAAATTTCTACCACAA+TGG | + | chr6_2:76284894-76284913 | None:intergenic | 30.0% | |
| ATAAACAATATCAGCAGTCA+AGG | + | chr6_2:76284990-76285009 | None:intergenic | 30.0% | |
| AAAGAAGACAAACTAAACGT+CGG | + | chr6_2:76285078-76285097 | None:intergenic | 30.0% | |
| !! | ACAAATAGATCGAAAGTGTT+TGG | - | chr6_2:76285220-76285239 | Msa0929070:intron | 30.0% |
| !! | CAAATAGATCGAAAGTGTTT+GGG | - | chr6_2:76285221-76285240 | Msa0929070:intron | 30.0% |
| ACAACTAAACTATTGTCCTT+GGG | + | chr6_2:76285481-76285500 | None:intergenic | 30.0% | |
| TCATTGCTTCATTAAGATCT+TGG | + | chr6_2:76285519-76285538 | None:intergenic | 30.0% | |
| ! | GTTAACATATAGAGCTTTAG+AGG | - | chr6_2:76285637-76285656 | Msa0929070:five_prime_UTR | 30.0% |
| GCAATAGAAAGAAGGTTAAA+TGG | - | chr6_2:76285678-76285697 | Msa0929070:intron | 30.0% | |
| ACAAGAACCATACTTACTTT+GGG | + | chr6_2:76285710-76285729 | None:intergenic | 30.0% | |
| AACAAGAACCATACTTACTT+TGG | + | chr6_2:76285711-76285730 | None:intergenic | 30.0% | |
| CAATCATACGGAAAATATAC+AGG | + | chr6_2:76285749-76285768 | None:intergenic | 30.0% | |
| GGAGGATAAACAAGAATAAA+AGG | + | chr6_2:76285933-76285952 | None:intergenic | 30.0% | |
| GTAGCCAATTGAAAACATAT+AGG | - | chr6_2:76286007-76286026 | Msa0929070:intron | 30.0% | |
| ATTATTTAGAAAGGGTAGTC+TGG | - | chr6_2:76286189-76286208 | Msa0929070:intron | 30.0% | |
| ! | TAGACTTAGCTTGATTACAT+TGG | - | chr6_2:76286244-76286263 | Msa0929070:intron | 30.0% |
| ACAACAGTATCTATTCATGA+AGG | + | chr6_2:76286401-76286420 | None:intergenic | 30.0% | |
| CTGCTAATATTACTAAGTCT+TGG | - | chr6_2:76286575-76286594 | Msa0929070:intron | 30.0% | |
| ! | TATATGATTTGCGAAACCAA+TGG | - | chr6_2:76286741-76286760 | Msa0929070:five_prime_UTR | 30.0% |
| ! | ATATGATTTGCGAAACCAAT+GGG | - | chr6_2:76286742-76286761 | Msa0929070:five_prime_UTR | 30.0% |
| AGCAAGTATCAACTCAGATA+AGG | - | chr6_2:76284343-76284362 | Msa0929070:intron | 35.0% | |
| ! | TAGTCGATTTCCTTGAACAT+GGG | + | chr6_2:76284417-76284436 | None:intergenic | 35.0% |
| AGCAATACTTGAAACACACA+AGG | + | chr6_2:76284440-76284459 | None:intergenic | 35.0% | |
| ATAACTGTTCTGTGCTTTCA+CGG | - | chr6_2:76284597-76284616 | Msa0929070:intron | 35.0% | |
| !! | GTGCTTGCTATGTTAAAATG+TGG | - | chr6_2:76284658-76284677 | Msa0929070:intron | 35.0% |
| GATTGTCACATTGTGAATCT+CGG | - | chr6_2:76284959-76284978 | Msa0929070:intron | 35.0% | |
| !! | TTTTGGTTGATGCTGATGTT+AGG | - | chr6_2:76285041-76285060 | Msa0929070:intron | 35.0% |
| ! | TTTGGTTGATGCTGATGTTA+GGG | - | chr6_2:76285042-76285061 | Msa0929070:intron | 35.0% |
| AAGAAGACAAACTAAACGTC+GGG | + | chr6_2:76285077-76285096 | None:intergenic | 35.0% | |
| TATTTGTCGAGATACAGAGA+CGG | + | chr6_2:76285207-76285226 | None:intergenic | 35.0% | |
| !!! | ATCGAAAGTGTTTGGGATTT+TGG | - | chr6_2:76285228-76285247 | Msa0929070:intron | 35.0% |
| GACTAAAATCCAAGCATACT+GGG | + | chr6_2:76285255-76285274 | None:intergenic | 35.0% | |
| GACAACTAAACTATTGTCCT+TGG | + | chr6_2:76285482-76285501 | None:intergenic | 35.0% | |
| CCATGTGAATGTACAGTAAA+AGG | + | chr6_2:76285848-76285867 | None:intergenic | 35.0% | |
| ! | CCTTTTACTGTACATTCACA+TGG | - | chr6_2:76285845-76285864 | Msa0929070:intron | 35.0% |
| AAAGCAAATTGTTGTCACCA+AGG | - | chr6_2:76286038-76286057 | Msa0929070:intron | 35.0% | |
| AAGCAAATTGTTGTCACCAA+GGG | - | chr6_2:76286039-76286058 | Msa0929070:intron | 35.0% | |
| GATCTAACTCTGTTCTGTAT+GGG | + | chr6_2:76286279-76286298 | None:intergenic | 35.0% | |
| AGATCTAACTCTGTTCTGTA+TGG | + | chr6_2:76286280-76286299 | None:intergenic | 35.0% | |
| TACAGAACAGAGTTAGATCT+AGG | - | chr6_2:76286280-76286299 | Msa0929070:intron | 35.0% | |
| ! | AGATCTAGGATTCCATTACA+TGG | - | chr6_2:76286294-76286313 | Msa0929070:intron | 35.0% |
| TGCTTCTGCTTATAAAAAGC+TGG | - | chr6_2:76286324-76286343 | Msa0929070:intron | 35.0% | |
| CTTTCTTGGCTACAAATGAA+TGG | + | chr6_2:76286497-76286516 | None:intergenic | 35.0% | |
| TATCCACAATCATTGCCATT+AGG | + | chr6_2:76286523-76286542 | None:intergenic | 35.0% | |
| TATTACTAAGTCTTGGATGG+AGG | - | chr6_2:76286582-76286601 | Msa0929070:intron | 35.0% | |
| ATTGAAGACCTACAATGTGT+AGG | + | chr6_2:76286693-76286712 | None:intergenic | 35.0% | |
| TCTCACTTCACCATGTATGT+TGG | - | chr6_2:76284383-76284402 | Msa0929070:intron | 40.0% | |
| ! | GTAGTCGATTTCCTTGAACA+TGG | + | chr6_2:76284418-76284437 | None:intergenic | 40.0% |
| TTTGTAAGCACAACAGTGGT+GGG | + | chr6_2:76284537-76284556 | None:intergenic | 40.0% | |
| ACACTTTGTAAGCACAACAG+TGG | + | chr6_2:76284541-76284560 | None:intergenic | 40.0% | |
| TAACTGTTCTGTGCTTTCAC+GGG | - | chr6_2:76284598-76284617 | Msa0929070:intron | 40.0% | |
| TTAGATTAGGAGCTCCATTG+TGG | - | chr6_2:76284877-76284896 | Msa0929070:intron | 40.0% | |
| ! | TCCAGCTCAATTCTCTCTTT+TGG | - | chr6_2:76285024-76285043 | Msa0929070:intron | 40.0% |
| ACCAAAAGAGAGAATTGAGC+TGG | + | chr6_2:76285028-76285047 | None:intergenic | 40.0% | |
| ! | TTGGTTGATGCTGATGTTAG+GGG | - | chr6_2:76285043-76285062 | Msa0929070:intron | 40.0% |
| AAAACTGTCACTGAGTATGG+TGG | + | chr6_2:76285139-76285158 | None:intergenic | 40.0% | |
| GCAAAAACTGTCACTGAGTA+TGG | + | chr6_2:76285142-76285161 | None:intergenic | 40.0% | |
| GGACTAAAATCCAAGCATAC+TGG | + | chr6_2:76285256-76285275 | None:intergenic | 40.0% | |
| TTCAGGGACACATACAAACT+AGG | - | chr6_2:76285302-76285321 | Msa0929070:CDS | 40.0% | |
| ! | GATCTTGGTGCATTGAACAA+AGG | + | chr6_2:76285504-76285523 | None:intergenic | 40.0% |
| GTTTCGTCCCAAAGTAAGTA+TGG | - | chr6_2:76285700-76285719 | Msa0929070:intron | 40.0% | |
| AAGCATGTGAGTCCATGTAA+TGG | + | chr6_2:76286309-76286328 | None:intergenic | 40.0% | |
| TAGCCAAGAAAGCAACCTAA+TGG | - | chr6_2:76286505-76286524 | Msa0929070:intron | 40.0% | |
| ! | TTGCCATTAGGTTGCTTTCT+TGG | + | chr6_2:76286511-76286530 | None:intergenic | 40.0% |
| CAACCTAATGGCAATGATTG+TGG | - | chr6_2:76286517-76286536 | Msa0929070:intron | 40.0% | |
| TCATCATCAGTTAATGGCGT+TGG | + | chr6_2:76286719-76286738 | None:intergenic | 40.0% | |
| CAAGAAAACAAGTTGCCCAT+TGG | + | chr6_2:76286760-76286779 | None:intergenic | 40.0% | |
| CTGATACTCCTTTCTCGTAC+AGG | + | chr6_2:76284292-76284311 | None:intergenic | 45.0% | |
| GGTAACTGCTCCAACATACA+TGG | + | chr6_2:76284396-76284415 | None:intergenic | 45.0% | |
| ! | AGTGGTGGGACTCAAAGAAA+TGG | + | chr6_2:76284523-76284542 | None:intergenic | 45.0% |
| CTTTGTAAGCACAACAGTGG+TGG | + | chr6_2:76284538-76284557 | None:intergenic | 45.0% | |
| AGATACGTATCCACCAGTCA+AGG | - | chr6_2:76284773-76284792 | Msa0929070:intron | 45.0% | |
| ! | GATTTTGGACCCAGTATGCT+TGG | - | chr6_2:76285243-76285262 | Msa0929070:intron | 45.0% |
| ! | AGAGGTTCATCAACTTGCTC+AGG | - | chr6_2:76285655-76285674 | Msa0929070:intron | 45.0% |
| ! | GAGGTTCATCAACTTGCTCA+GGG | - | chr6_2:76285656-76285675 | Msa0929070:intron | 45.0% |
| TGCTCAGGGCAATAGAAAGA+AGG | - | chr6_2:76285670-76285689 | Msa0929070:intron | 45.0% | |
| CTAAGAAACGAACACACCCT+TGG | + | chr6_2:76286058-76286077 | None:intergenic | 45.0% | |
| !! | ATAAGTAATTAATATTAATA+AGG | + | chr6_2:76286665-76286684 | None:intergenic | 5.0% |
| GAGCACTACCTGTACGAGAA+AGG | - | chr6_2:76284281-76284300 | Msa0929070:CDS | 50.0% | |
| GGAGCAGTTACCCATGTTCA+AGG | - | chr6_2:76284404-76284423 | Msa0929070:CDS | 50.0% | |
| AAGTCGTGAACCTTGACTGG+TGG | + | chr6_2:76284786-76284805 | None:intergenic | 50.0% | |
| TCGAAGTCGTGAACCTTGAC+TGG | + | chr6_2:76284789-76284808 | None:intergenic | 50.0% | |
| TTGTCGAGATACAGAGACGG+AGG | + | chr6_2:76285204-76285223 | None:intergenic | 50.0% | |
| TCTACGTGTGCAGAAGACAC+TGG | - | chr6_2:76285437-76285456 | Msa0929070:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 76284210 | 76286796 | 76284210 | ID=Msa0929070;Name=Msa0929070 |
| chr6_2 | mRNA | 76284210 | 76286796 | 76284210 | ID=Msa0929070-mRNA-1;Parent=Msa0929070;Name=Msa0929070-mRNA-1;_AED=0.18;_eAED=0.18;_QI=257|0.66|0.57|0.71|0.5|0.42|7|0|98 |
| chr6_2 | exon | 76284210 | 76284302 | 76284210 | ID=Msa0929070-mRNA-1:exon:12856;Parent=Msa0929070-mRNA-1 |
| chr6_2 | exon | 76284403 | 76284498 | 76284403 | ID=Msa0929070-mRNA-1:exon:12855;Parent=Msa0929070-mRNA-1 |
| chr6_2 | exon | 76285294 | 76285357 | 76285294 | ID=Msa0929070-mRNA-1:exon:12854;Parent=Msa0929070-mRNA-1 |
| chr6_2 | exon | 76285452 | 76285556 | 76285452 | ID=Msa0929070-mRNA-1:exon:12853;Parent=Msa0929070-mRNA-1 |
| chr6_2 | exon | 76285635 | 76285662 | 76285635 | ID=Msa0929070-mRNA-1:exon:12852;Parent=Msa0929070-mRNA-1 |
| chr6_2 | exon | 76285891 | 76285903 | 76285891 | ID=Msa0929070-mRNA-1:exon:12851;Parent=Msa0929070-mRNA-1 |
| chr6_2 | exon | 76286642 | 76286796 | 76286642 | ID=Msa0929070-mRNA-1:exon:12850;Parent=Msa0929070-mRNA-1 |
| chr6_2 | five_prime_UTR | 76286642 | 76286796 | 76286642 | ID=Msa0929070-mRNA-1:five_prime_utr;Parent=Msa0929070-mRNA-1 |
| chr6_2 | five_prime_UTR | 76285891 | 76285903 | 76285891 | ID=Msa0929070-mRNA-1:five_prime_utr;Parent=Msa0929070-mRNA-1 |
| chr6_2 | five_prime_UTR | 76285635 | 76285662 | 76285635 | ID=Msa0929070-mRNA-1:five_prime_utr;Parent=Msa0929070-mRNA-1 |
| chr6_2 | five_prime_UTR | 76285496 | 76285556 | 76285496 | ID=Msa0929070-mRNA-1:five_prime_utr;Parent=Msa0929070-mRNA-1 |
| chr6_2 | CDS | 76285452 | 76285495 | 76285452 | ID=Msa0929070-mRNA-1:cds;Parent=Msa0929070-mRNA-1 |
| chr6_2 | CDS | 76285294 | 76285357 | 76285294 | ID=Msa0929070-mRNA-1:cds;Parent=Msa0929070-mRNA-1 |
| chr6_2 | CDS | 76284403 | 76284498 | 76284403 | ID=Msa0929070-mRNA-1:cds;Parent=Msa0929070-mRNA-1 |
| chr6_2 | CDS | 76284210 | 76284302 | 76284210 | ID=Msa0929070-mRNA-1:cds;Parent=Msa0929070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
