AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0994850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0994850 MtrunA17_Chr6g0478201 94.301 193 11 0 1 193 1 193 7.28e-135 382
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 105 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCATTTGGTTATCATTT+AGG 0.085330 6_4:-70140243 None:intergenic
CGTTATGGGTAACTTATAAA+AGG 0.152275 6_4:-70136660 None:intergenic
TTCCATTTGGTTATCATTTA+GGG 0.185581 6_4:-70140242 None:intergenic
CAAATACTGTCTTCTGCTTT+AGG 0.188456 6_4:+70137054 Msa0994850:CDS
TTGACTGTTAGCTGCAATTA+TGG 0.212931 6_4:+70137003 Msa0994850:CDS
TTTCCCATGGTGCTTGATTA+AGG 0.214053 6_4:+70138581 Msa0994850:three_prime_UTR
CTTTATGCTAATTTCTGTTA+TGG 0.217904 6_4:+70138620 Msa0994850:three_prime_UTR
TGTGACAGTGTTAGAGAAAA+AGG 0.251962 6_4:-70136940 None:intergenic
AAATACTGTCTTCTGCTTTA+GGG 0.295966 6_4:+70137055 Msa0994850:CDS
TTTATGCTAATTTCTGTTAT+GGG 0.305109 6_4:+70138621 Msa0994850:three_prime_UTR
ATAAACTCAATCCTTGCTTT+TGG 0.315787 6_4:+70141601 Msa0994850:three_prime_UTR
TGTTGGGATGCTGTTGTAGA+TGG 0.321829 6_4:+70141364 Msa0994850:three_prime_UTR
CCAACGGTTGTGGGTGCATT+AGG 0.322070 6_4:+70138287 Msa0994850:CDS
ATTCTTCTCTTCCTCTCCCT+TGG 0.333520 6_4:-70141522 None:intergenic
GAATGAATGGAGGGGAAAAT+TGG 0.340413 6_4:+70141541 Msa0994850:three_prime_UTR
GAATCATTCCTTTGTTCTCT+TGG 0.340769 6_4:+70138309 Msa0994850:CDS
AAGGTCTATACATGGTGATA+TGG 0.342129 6_4:+70141294 Msa0994850:three_prime_UTR
GTTTGATGATAATTCGTTAT+GGG 0.344115 6_4:-70136674 None:intergenic
TTGTCAGCATAAAGACAAAA+TGG 0.347742 6_4:-70141567 None:intergenic
TTCTTCTCTTCCTCTCCCTT+GGG 0.360595 6_4:-70141521 None:intergenic
TCATTGTTCAATATACAAAA+AGG 0.367458 6_4:+70136717 Msa0994850:five_prime_UTR
CTTGATGCATGTAAGAGAAT+TGG 0.384957 6_4:+70138251 Msa0994850:CDS
AGGACTTCCATGCATGTAAC+TGG 0.389010 6_4:+70140170 Msa0994850:three_prime_UTR
GCATCTTCTTGTCATGTGTT+TGG 0.389414 6_4:+70141328 Msa0994850:three_prime_UTR
GGAATGAAAAGGTTTGATCT+TGG 0.396693 6_4:+70137024 Msa0994850:CDS
AGTTTGATGATAATTCGTTA+TGG 0.406661 6_4:-70136675 None:intergenic
CGGTGGGTTGCGTGTGTTTG+TGG 0.407462 6_4:+70137083 Msa0994850:CDS
TTTAGTGTCATTAGGTGTCC+TGG 0.408259 6_4:-70141646 None:intergenic
ACCCTCTTGAAGATCGAATA+AGG 0.415757 6_4:+70141275 Msa0994850:three_prime_UTR
TGACACTAAACTTGCTCCTT+GGG 0.423217 6_4:+70141659 Msa0994850:three_prime_UTR
TGGTCATACTCACTTCTGTT+GGG 0.431860 6_4:+70141348 Msa0994850:three_prime_UTR
ATGACACTAAACTTGCTCCT+TGG 0.436240 6_4:+70141658 Msa0994850:three_prime_UTR
GACAAAGAGGAGGACATAAC+AGG 0.438405 6_4:+70138463 Msa0994850:CDS
TCTCCTGTATCATTTCCATT+TGG 0.443236 6_4:-70140255 None:intergenic
TTCCTGGGAATCATGACCTT+TGG 0.446678 6_4:+70137277 Msa0994850:CDS
GAGAGGAAGAGAAGAATGAA+TGG 0.454640 6_4:+70141528 Msa0994850:three_prime_UTR
AGAGACAAATCCAACGGTTG+TGG 0.457003 6_4:+70138277 Msa0994850:CDS
CTGCTTTAGGGGACAGCGGT+GGG 0.457348 6_4:+70137067 Msa0994850:CDS
GGAGCAAGTTTAGTGTCATT+AGG 0.460428 6_4:-70141654 None:intergenic
GCTGCAATTATGGAATGAAA+AGG 0.465182 6_4:+70137013 Msa0994850:CDS
CCTCTCCCTTGGGTAAGCTA+AGG 0.469330 6_4:-70141511 None:intergenic
ATCTCCATTTGAAAGTCCAT+TGG 0.473637 6_4:-70140194 None:intergenic
ATGCTGTTGTAGATGGCATT+AGG 0.478030 6_4:+70141371 Msa0994850:three_prime_UTR
TTGGTCATACTCACTTCTGT+TGG 0.478544 6_4:+70141347 Msa0994850:three_prime_UTR
TTTGTCATCTGTGAATTATA+AGG 0.479499 6_4:+70137155 Msa0994850:CDS
TAACCAAATGGAAATGATAC+AGG 0.480184 6_4:+70140252 Msa0994850:three_prime_UTR
CATGAAGATTGATGATTATG+AGG 0.481207 6_4:-70136967 None:intergenic
TGGCCCAATGGACTTTCAAA+TGG 0.484256 6_4:+70140190 Msa0994850:three_prime_UTR
CCTGGGAACAAAGTGGGAAA+AGG 0.485105 6_4:-70140305 None:intergenic
GTTATGGGTAACTTATAAAA+GGG 0.485492 6_4:-70136659 None:intergenic
CTCTCCCTTGGGTAAGCTAA+GGG 0.490091 6_4:-70141510 None:intergenic
AGGTCTATACATGGTGATAT+GGG 0.493669 6_4:+70141295 Msa0994850:three_prime_UTR
TCTCCATTTGAAAGTCCATT+GGG 0.509210 6_4:-70140193 None:intergenic
TGCCCTAAATGATAACCAAA+TGG 0.511234 6_4:+70140240 Msa0994850:three_prime_UTR
TTAGTGTCATTAGGTGTCCT+GGG 0.514394 6_4:-70141645 None:intergenic
GGGTAACTTATAAAAGGGAT+AGG 0.515544 6_4:-70136654 None:intergenic
TCGCATCCCGTCTTTGGAGA+TGG 0.521521 6_4:+70138489 Msa0994850:CDS
TTCACAGAGCTTTGACAAAG+AGG 0.523921 6_4:+70138450 Msa0994850:intron
AAGAACTTTGTCCAGAAAAG+AGG 0.533211 6_4:+70141212 Msa0994850:three_prime_UTR
AGGAAGAGAAGAATGAATGG+AGG 0.535042 6_4:+70141531 Msa0994850:three_prime_UTR
TCTGCTTTAGGGGACAGCGG+TGG 0.537920 6_4:+70137066 Msa0994850:CDS
TGACCTTTGGTGTCGTCGCG+AGG 0.538385 6_4:+70137290 Msa0994850:CDS
ACATAATTGCAGGTATGTAC+AGG 0.539170 6_4:+70141485 Msa0994850:intron
GATGATGTCCTTCTTGTGGC+TGG 0.544144 6_4:+70137177 Msa0994850:CDS
GAGACAAATCCAACGGTTGT+GGG 0.545127 6_4:+70138278 Msa0994850:CDS
GGAAGAGAAGAATGAATGGA+GGG 0.545985 6_4:+70141532 Msa0994850:three_prime_UTR
CACCAAAGGTCATGATTCCC+AGG 0.550434 6_4:-70137279 None:intergenic
CCTAATGCACCCACAACCGT+TGG 0.552291 6_4:-70138287 None:intergenic
AATACTGTCTTCTGCTTTAG+GGG 0.553449 6_4:+70137056 Msa0994850:CDS
CATGCATGTAACTGGCCCAA+TGG 0.560700 6_4:+70140178 Msa0994850:three_prime_UTR
ACATGGTGATATGGGAAGGA+AGG 0.563356 6_4:+70141303 Msa0994850:three_prime_UTR
GGTTAGCATTGATGGTGGTG+AGG 0.564432 6_4:+70136911 Msa0994850:exon
ATCATGCGCTTAATTTCCCA+TGG 0.565369 6_4:+70138568 Msa0994850:three_prime_UTR
AGTCCTTAATCAAGCACCAT+GGG 0.575013 6_4:-70138584 None:intergenic
TTGTAAAATCTGGCTACCCA+AGG 0.582209 6_4:-70141675 None:intergenic
TAGTCACCATCTCCAAAGAC+GGG 0.582917 6_4:-70138495 None:intergenic
GACCTTATTCGATCTTCAAG+AGG 0.587324 6_4:-70141277 None:intergenic
ATTATTACTCTGTCAATCCC+AGG 0.588216 6_4:+70141628 Msa0994850:three_prime_UTR
TGATGAGAATTTGAAGTGGG+TGG 0.589361 6_4:+70137128 Msa0994850:CDS
GACCTTTGGTGTCGTCGCGA+GGG 0.591054 6_4:+70137291 Msa0994850:CDS
TTTGTTCTCTTGGTACCATG+AGG 0.592704 6_4:+70138319 Msa0994850:CDS
TAAGGATGATGTCCTTCTTG+TGG 0.593180 6_4:+70137173 Msa0994850:CDS
CAACATCACCAGCCACAAGA+AGG 0.597011 6_4:-70137185 None:intergenic
TAATCACCTGGGAACAAAGT+GGG 0.597285 6_4:-70140311 None:intergenic
CTATACATGGTGATATGGGA+AGG 0.597645 6_4:+70141299 Msa0994850:three_prime_UTR
CCTTAGCTTACCCAAGGGAG+AGG 0.599191 6_4:+70141511 Msa0994850:three_prime_UTR
ATAGTCACCATCTCCAAAGA+CGG 0.599612 6_4:-70138496 None:intergenic
GAAGAGAAGAATGAATGGAG+GGG 0.599927 6_4:+70141533 Msa0994850:three_prime_UTR
GTCCCTCGCGACGACACCAA+AGG 0.601344 6_4:-70137293 None:intergenic
ACCTTATTCGATCTTCAAGA+GGG 0.604887 6_4:-70141276 None:intergenic
CATTGGGCCAGTTACATGCA+TGG 0.607313 6_4:-70140177 None:intergenic
AGGCACCCTTAGCTTACCCA+AGG 0.612423 6_4:+70141505 Msa0994850:three_prime_UTR
TTTATTACTTTAAAATACTG+AGG 0.616394 6_4:+70141750 Msa0994850:three_prime_UTR
TAATAATCAGACCAAAAGCA+AGG 0.627954 6_4:-70141612 None:intergenic
ACAGAGCTTTGACAAAGAGG+AGG 0.632307 6_4:+70138453 Msa0994850:intron
TAGTCCTTAATCAAGCACCA+TGG 0.642783 6_4:-70138585 None:intergenic
ATCAAAATATAAAGAGAGCG+AGG 0.643349 6_4:-70140218 None:intergenic
TTATGATGAGAATTTGAAGT+GGG 0.657132 6_4:+70137125 Msa0994850:CDS
GATCGAATAAGGTCTATACA+TGG 0.666016 6_4:+70141286 Msa0994850:three_prime_UTR
TCTTCTGCTTTAGGGGACAG+CGG 0.673969 6_4:+70137063 Msa0994850:CDS
TGGAGTAGAGACAAATCCAA+CGG 0.675434 6_4:+70138271 Msa0994850:CDS
GGCACCCTTAGCTTACCCAA+GGG 0.679695 6_4:+70141506 Msa0994850:three_prime_UTR
TTAATCACCTGGGAACAAAG+TGG 0.679999 6_4:-70140312 None:intergenic
ATTATGATGAGAATTTGAAG+TGG 0.681715 6_4:+70137124 Msa0994850:CDS
TCATGGTACCAAGAGAACAA+AGG 0.703969 6_4:-70138317 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAACAAATATAAGA+AGG - chr6_4:70140137-70140156 None:intergenic 10.0%
!!! ATATTTGTTTTTTTTTTCTT+AGG + chr6_4:70140141-70140160 Msa0994850:intron 10.0%
!!! AGTTTTCATTATATTAATAT+TGG - chr6_4:70140975-70140994 None:intergenic 10.0%
!! ATGTAAAATATGAAGAAAAT+TGG - chr6_4:70137813-70137832 None:intergenic 15.0%
!! TAACAAAACTGTTAATTATT+TGG + chr6_4:70139387-70139406 Msa0994850:intron 15.0%
!! AATGTAAATCTTAGTATTTA+TGG + chr6_4:70139510-70139529 Msa0994850:intron 15.0%
!!! TGATTTTTACAAATTATTAG+CGG + chr6_4:70140762-70140781 Msa0994850:intron 15.0%
!!! TTTATTACTTTAAAATACTG+AGG + chr6_4:70141750-70141769 Msa0994850:three_prime_UTR 15.0%
!! TCATTGTTCAATATACAAAA+AGG + chr6_4:70136717-70136736 Msa0994850:five_prime_UTR 20.0%
!! AAAACTATGTGAAAGAAAAA+AGG - chr6_4:70136745-70136764 None:intergenic 20.0%
!! AAGTTAAACAATTTGCAAAA+GGG - chr6_4:70136844-70136863 None:intergenic 20.0%
!! ATAATCAACATAATGCAATA+TGG - chr6_4:70137356-70137375 None:intergenic 20.0%
!!! CTTTGTTTTATCTTTTGTTA+AGG - chr6_4:70137931-70137950 None:intergenic 20.0%
!! CTTAACAAAAGATAAAACAA+AGG + chr6_4:70137929-70137948 Msa0994850:intron 20.0%
!! TTTATGCTAATTTCTGTTAT+GGG + chr6_4:70138621-70138640 Msa0994850:three_prime_UTR 20.0%
!! TACTAACTTAGAAACTTAAA+GGG + chr6_4:70138895-70138914 Msa0994850:intron 20.0%
!!! TAATCTAGTTCAAAGTTATT+GGG - chr6_4:70138935-70138954 None:intergenic 20.0%
!!! CTTTTAAAGATCAATCTAAT+TGG - chr6_4:70139149-70139168 None:intergenic 20.0%
!! TTGAAGACAACTAAATTTAT+AGG + chr6_4:70139293-70139312 Msa0994850:intron 20.0%
!! ATAATACCATCTTAGAATTT+GGG - chr6_4:70139842-70139861 None:intergenic 20.0%
!! TATAATACCATCTTAGAATT+TGG - chr6_4:70139843-70139862 None:intergenic 20.0%
!!! AGTCTCAATAATTTTTTAAG+TGG + chr6_4:70139961-70139980 Msa0994850:intron 20.0%
!!! GTCTCAATAATTTTTTAAGT+GGG + chr6_4:70139962-70139981 Msa0994850:intron 20.0%
!! CATGAGAATTATTAGAATTT+GGG - chr6_4:70140038-70140057 None:intergenic 20.0%
!! ACATGAGAATTATTAGAATT+TGG - chr6_4:70140039-70140058 None:intergenic 20.0%
!!! TAACTTTTATATTGTTAAGC+TGG + chr6_4:70141726-70141745 Msa0994850:three_prime_UTR 20.0%
! GTTATGGGTAACTTATAAAA+GGG - chr6_4:70136662-70136681 None:intergenic 25.0%
!! GTTTGATGATAATTCGTTAT+GGG - chr6_4:70136677-70136696 None:intergenic 25.0%
!! AGTTTGATGATAATTCGTTA+TGG - chr6_4:70136678-70136697 None:intergenic 25.0%
! TGTTCAAAATTGAAACTTGA+GGG - chr6_4:70136809-70136828 None:intergenic 25.0%
! ATGTTCAAAATTGAAACTTG+AGG - chr6_4:70136810-70136829 None:intergenic 25.0%
! CAAGTTAAACAATTTGCAAA+AGG - chr6_4:70136845-70136864 None:intergenic 25.0%
!! CTTTTGCAAATTGTTTAACT+TGG + chr6_4:70136843-70136862 Msa0994850:intron 25.0%
!! TCATTGTAGATCAAGATTTT+TGG + chr6_4:70136890-70136909 Msa0994850:intron 25.0%
! ATTATGATGAGAATTTGAAG+TGG + chr6_4:70137124-70137143 Msa0994850:CDS 25.0%
!! TTATGATGAGAATTTGAAGT+GGG + chr6_4:70137125-70137144 Msa0994850:CDS 25.0%
! TTTGTCATCTGTGAATTATA+AGG + chr6_4:70137155-70137174 Msa0994850:CDS 25.0%
!! ACTACACTTATTTAAAACCT+TGG - chr6_4:70137457-70137476 None:intergenic 25.0%
! TTAATTCCATGAACGTATTT+AGG + chr6_4:70137787-70137806 Msa0994850:intron 25.0%
!! TTTCTGTTGGGTTTAATTTA+AGG + chr6_4:70137844-70137863 Msa0994850:intron 25.0%
! TTGAGTTATTTAAGCTTATC+CGG - chr6_4:70138067-70138086 None:intergenic 25.0%
! AAGATTGCAACAAAGTTTAT+GGG - chr6_4:70138165-70138184 None:intergenic 25.0%
! TGAATCAAAAGTGATTCTTT+AGG + chr6_4:70138399-70138418 Msa0994850:intron 25.0%
! GAATCAAAAGTGATTCTTTA+GGG + chr6_4:70138400-70138419 Msa0994850:intron 25.0%
! AATCAAAAGTGATTCTTTAG+GGG + chr6_4:70138401-70138420 Msa0994850:intron 25.0%
!!! ATCAATCAACGTTTTTTGAA+TGG - chr6_4:70138542-70138561 None:intergenic 25.0%
!! ATTCAAAAAACGTTGATTGA+TGG + chr6_4:70138541-70138560 Msa0994850:three_prime_UTR 25.0%
! CTTTATGCTAATTTCTGTTA+TGG + chr6_4:70138620-70138639 Msa0994850:three_prime_UTR 25.0%
!!! TGTGTGAATTTTAACTTTCA+GGG + chr6_4:70138653-70138672 Msa0994850:intron 25.0%
! AAATATATAGCAAAACCGAA+TGG + chr6_4:70138865-70138884 Msa0994850:intron 25.0%
! CTACTAACTTAGAAACTTAA+AGG + chr6_4:70138894-70138913 Msa0994850:intron 25.0%
!! CTAATCTAGTTCAAAGTTAT+TGG - chr6_4:70138936-70138955 None:intergenic 25.0%
! ATTTAGGCTCAAAAGTTATT+CGG + chr6_4:70139072-70139091 Msa0994850:intron 25.0%
!! AGATTGATCTTTAAAAGTGT+CGG + chr6_4:70139152-70139171 Msa0994850:intron 25.0%
! TTCTTCAAAAAATGAGAGAT+AGG + chr6_4:70139178-70139197 Msa0994850:intron 25.0%
! TATTCATTCTCTCAGATTTA+GGG - chr6_4:70139259-70139278 None:intergenic 25.0%
! ATATTCATTCTCTCAGATTT+AGG - chr6_4:70139260-70139279 None:intergenic 25.0%
! ACTAAATTTATAGGTCACAA+TGG + chr6_4:70139302-70139321 Msa0994850:intron 25.0%
!! TTTTGTTAACAGTTACTACT+GGG - chr6_4:70139375-70139394 None:intergenic 25.0%
! GTATAGACTTATAACAAGAT+TGG - chr6_4:70139459-70139478 None:intergenic 25.0%
! TGTTATAAGTCTATACCTAT+TGG + chr6_4:70139463-70139482 Msa0994850:intron 25.0%
! TAGAACCAATACAATAACAA+GGG + chr6_4:70139486-70139505 Msa0994850:intron 25.0%
! ATAAAACTTAGAATTTGGGT+CGG - chr6_4:70139650-70139669 None:intergenic 25.0%
!!! ACCCAAATTCTAAGTTTTAT+TGG + chr6_4:70139650-70139669 Msa0994850:intron 25.0%
! CCCAATAAAACTTAGAATTT+GGG - chr6_4:70139654-70139673 None:intergenic 25.0%
!!! CCCAAATTCTAAGTTTTATT+GGG + chr6_4:70139651-70139670 Msa0994850:intron 25.0%
! CTGAAAATGAGTTTATAAGT+GGG + chr6_4:70139766-70139785 Msa0994850:intron 25.0%
! TTCCATTTGGTTATCATTTA+GGG - chr6_4:70140245-70140264 None:intergenic 25.0%
! TTTCCATTTGGTTATCATTT+AGG - chr6_4:70140246-70140265 None:intergenic 25.0%
!! ATATGTTTTCTTCAATGCAA+TGG + chr6_4:70140425-70140444 Msa0994850:intron 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr6_4:70140737-70140756 None:intergenic 25.0%
! ATTTATCAGAGTTTATCCAT+TGG - chr6_4:70140920-70140939 None:intergenic 25.0%
!!! AATGCATTTTAGTGTTTATG+AGG - chr6_4:70141063-70141082 None:intergenic 25.0%
! AACACATTATTTATCTCTTG+AGG - chr6_4:70141119-70141138 None:intergenic 25.0%
!!! TTTAAGCTTTTTATTTGCTC+TGG + chr6_4:70141152-70141171 Msa0994850:intron 25.0%
! ATACAACAAATGGTACATAA+AGG - chr6_4:70141450-70141469 None:intergenic 25.0%
!!! TTGCTTTTTCTTGTAAAATC+TGG - chr6_4:70141688-70141707 None:intergenic 25.0%
CGTTATGGGTAACTTATAAA+AGG - chr6_4:70136663-70136682 None:intergenic 30.0%
TGAAACTTGAGGGAATTTAT+TGG - chr6_4:70136799-70136818 None:intergenic 30.0%
!!! AGATTTTTGGTTAGCATTGA+TGG + chr6_4:70136903-70136922 Msa0994850:exon 30.0%
! CATGAAGATTGATGATTATG+AGG - chr6_4:70136970-70136989 None:intergenic 30.0%
AAATACTGTCTTCTGCTTTA+GGG + chr6_4:70137055-70137074 Msa0994850:CDS 30.0%
! AACATGTTTTCTATGTTCCT+GGG + chr6_4:70137262-70137281 Msa0994850:CDS 30.0%
! TTGACACAAACATAGCTTTT+AGG + chr6_4:70137376-70137395 Msa0994850:intron 30.0%
AATTGTCAAATACTACACTC+GGG - chr6_4:70137432-70137451 None:intergenic 30.0%
CAATTGTCAAATACTACACT+CGG - chr6_4:70137433-70137452 None:intergenic 30.0%
TAGTATTTGACAATTGTCCA+AGG + chr6_4:70137437-70137456 Msa0994850:intron 30.0%
TAGTATTTGACAATTGTCCA+AGG + chr6_4:70137437-70137456 Msa0994850:intron 30.0%
!!! AAGGTTTTAAATTGCGGTAA+CGG - chr6_4:70137648-70137667 None:intergenic 30.0%
!!! CGATGAAAGGTTTTAAATTG+CGG - chr6_4:70137654-70137673 None:intergenic 30.0%
TTAAACCCAACAGAAAATCA+GGG - chr6_4:70137840-70137859 None:intergenic 30.0%
ATTAAACCCAACAGAAAATC+AGG - chr6_4:70137841-70137860 None:intergenic 30.0%
! TTGGGTTTAATTTAAGGTGA+AGG + chr6_4:70137850-70137869 Msa0994850:intron 30.0%
! TGGGTTTAATTTAAGGTGAA+GGG + chr6_4:70137851-70137870 Msa0994850:intron 30.0%
GAAGATTGCAACAAAGTTTA+TGG - chr6_4:70138166-70138185 None:intergenic 30.0%
!!! GTGTGTGAATTTTAACTTTC+AGG + chr6_4:70138652-70138671 Msa0994850:intron 30.0%
! CAACAGTAAGCAACATTTTT+AGG - chr6_4:70138719-70138738 None:intergenic 30.0%
TTACTGTGTGTTAACAGTAT+AGG + chr6_4:70138773-70138792 Msa0994850:intron 30.0%
TTTCAGACAGAATAACAAAC+AGG + chr6_4:70138797-70138816 Msa0994850:intron 30.0%
TCAATGGCATTACATAATAG+AGG + chr6_4:70138834-70138853 Msa0994850:intron 30.0%
TGAGTTGTTAACTTAGGTTT+AGG - chr6_4:70138985-70139004 None:intergenic 30.0%
! AAAGCTTGAGTTGTTAACTT+AGG - chr6_4:70138991-70139010 None:intergenic 30.0%
TCCTTGTAAGAATTCGATTT+AGG + chr6_4:70139056-70139075 Msa0994850:intron 30.0%
! ATCTAATTGGCAGCATTTTA+TGG - chr6_4:70139136-70139155 None:intergenic 30.0%
GAGATAGGTCAAGAAATTAA+TGG + chr6_4:70139193-70139212 Msa0994850:intron 30.0%
AGAGAATGAATATGATGCAA+TGG + chr6_4:70139267-70139286 Msa0994850:intron 30.0%
ATGTAAGTTAAGTGTTTGAC+AGG + chr6_4:70139330-70139349 Msa0994850:intron 30.0%
!! GTTTTGTTAACAGTTACTAC+TGG - chr6_4:70139376-70139395 None:intergenic 30.0%
!! ATTGTATTGGTTCTACCAAT+AGG - chr6_4:70139481-70139500 None:intergenic 30.0%
GTAGAACCAATACAATAACA+AGG + chr6_4:70139485-70139504 Msa0994850:intron 30.0%
!! CATTACCCTTGTTATTGTAT+TGG - chr6_4:70139494-70139513 None:intergenic 30.0%
CATATCTCATACAATATGGT+GGG - chr6_4:70139562-70139581 None:intergenic 30.0%
AGACCATATCTCATACAATA+TGG - chr6_4:70139566-70139585 None:intergenic 30.0%
GCCCAATAAAACTTAGAATT+TGG - chr6_4:70139655-70139674 None:intergenic 30.0%
! CCACTTATAAACTCATTTTC+AGG - chr6_4:70139768-70139787 None:intergenic 30.0%
CCTGAAAATGAGTTTATAAG+TGG + chr6_4:70139765-70139784 Msa0994850:intron 30.0%
TAGTCTATTCAAGATCTACT+AGG + chr6_4:70139861-70139880 Msa0994850:intron 30.0%
GGAAAATAAACAAATACCGT+AGG - chr6_4:70140116-70140135 None:intergenic 30.0%
!!! TTTTTTTTCTTAGGCGTGTA+AGG + chr6_4:70140150-70140169 Msa0994850:intron 30.0%
ATCAAAATATAAAGAGAGCG+AGG - chr6_4:70140221-70140240 None:intergenic 30.0%
TAACCAAATGGAAATGATAC+AGG + chr6_4:70140252-70140271 Msa0994850:three_prime_UTR 30.0%
!!! GCTATTTTTTCAGTTCCAAT+TGG + chr6_4:70140353-70140372 Msa0994850:intron 30.0%
TATGTGGTTAAGTAACCAAT+TGG - chr6_4:70140371-70140390 None:intergenic 30.0%
ACTTAACCACATAAACTTGT+TGG + chr6_4:70140378-70140397 Msa0994850:intron 30.0%
TACTTTCCAACAAGTTTATG+TGG - chr6_4:70140387-70140406 None:intergenic 30.0%
TTTCTTCAATGCAATGGTAA+TGG + chr6_4:70140431-70140450 Msa0994850:intron 30.0%
!! CCTCACTCATTTTAGAAATT+AGG - chr6_4:70140461-70140480 None:intergenic 30.0%
!! CCTAATTTCTAAAATGAGTG+AGG + chr6_4:70140458-70140477 Msa0994850:intron 30.0%
! TAAGTTTTCGTAAGCTATCA+TGG + chr6_4:70140615-70140634 Msa0994850:intron 30.0%
TTACAAATTATTAGCGGTGT+CGG + chr6_4:70140768-70140787 Msa0994850:intron 30.0%
! CTATATATTTTTCCAGCCTA+TGG - chr6_4:70140836-70140855 None:intergenic 30.0%
ATAATGAAAACTGACCTGTA+CGG + chr6_4:70140983-70141002 Msa0994850:intron 30.0%
CATATGATTGTATGAGGAAA+AGG + chr6_4:70141006-70141025 Msa0994850:intron 30.0%
AGGTGTATAAAATCCAACAT+TGG + chr6_4:70141026-70141045 Msa0994850:intron 30.0%
GGAGTTATTTATTCCAATGT+TGG - chr6_4:70141042-70141061 None:intergenic 30.0%
!!! TATTCAATGACCGTTTTTTG+TGG + chr6_4:70141085-70141104 Msa0994850:intron 30.0%
!! CTTTTTATTTGCTCTGGTTA+TGG + chr6_4:70141158-70141177 Msa0994850:intron 30.0%
! TAGAATAACATCCTCTTTTC+TGG - chr6_4:70141226-70141245 None:intergenic 30.0%
!! GGTCTGAACCAATTATTTTT+GGG - chr6_4:70141258-70141277 None:intergenic 30.0%
AAACATAACTTCAGCACTTT+AGG - chr6_4:70141425-70141444 None:intergenic 30.0%
CCATTTAGCAATACAACAAA+TGG - chr6_4:70141460-70141479 None:intergenic 30.0%
!! CCATTTGTTGTATTGCTAAA+TGG + chr6_4:70141457-70141476 Msa0994850:intron 30.0%
TTGTCAGCATAAAGACAAAA+TGG - chr6_4:70141570-70141589 None:intergenic 30.0%
! ATAAACTCAATCCTTGCTTT+TGG + chr6_4:70141601-70141620 Msa0994850:three_prime_UTR 30.0%
TAATAATCAGACCAAAAGCA+AGG - chr6_4:70141615-70141634 None:intergenic 30.0%
GGGTAACTTATAAAAGGGAT+AGG - chr6_4:70136657-70136676 None:intergenic 35.0%
!!! TTTTTGGTTAGCATTGATGG+TGG + chr6_4:70136906-70136925 Msa0994850:exon 35.0%
GTGACAGTGTTAGAGAAAAA+GGG - chr6_4:70136942-70136961 None:intergenic 35.0%
TGTGACAGTGTTAGAGAAAA+AGG - chr6_4:70136943-70136962 None:intergenic 35.0%
TTGACTGTTAGCTGCAATTA+TGG + chr6_4:70137003-70137022 Msa0994850:CDS 35.0%
GCTGCAATTATGGAATGAAA+AGG + chr6_4:70137013-70137032 Msa0994850:CDS 35.0%
GGAATGAAAAGGTTTGATCT+TGG + chr6_4:70137024-70137043 Msa0994850:CDS 35.0%
CAAATACTGTCTTCTGCTTT+AGG + chr6_4:70137054-70137073 Msa0994850:CDS 35.0%
AATACTGTCTTCTGCTTTAG+GGG + chr6_4:70137056-70137075 Msa0994850:CDS 35.0%
! GAACATGTTTTCTATGTTCC+TGG + chr6_4:70137261-70137280 Msa0994850:CDS 35.0%
GCAATATGGACAGAATGATA+AGG - chr6_4:70137342-70137361 None:intergenic 35.0%
! CGGGACTTTATTTAAAACCT+TGG - chr6_4:70137493-70137512 None:intergenic 35.0%
AAAGTCCCGTGTTTAAATTC+TGG + chr6_4:70137504-70137523 Msa0994850:intron 35.0%
GTCATCCAGAATTTAAACAC+GGG - chr6_4:70137512-70137531 None:intergenic 35.0%
CGTCATCCAGAATTTAAACA+CGG - chr6_4:70137513-70137532 None:intergenic 35.0%
CGAAGAATTGCAGTAAAATC+CGG - chr6_4:70137596-70137615 None:intergenic 35.0%
AATAAGACTACTGCGATGAA+AGG - chr6_4:70137667-70137686 None:intergenic 35.0%
! CTCAATCTTTGAGGAACTAA+TGG - chr6_4:70137694-70137713 None:intergenic 35.0%
CATTAGTTCCTCAAAGATTG+AGG + chr6_4:70137692-70137711 Msa0994850:intron 35.0%
! AATTGGCCTAAATACGTTCA+TGG - chr6_4:70137796-70137815 None:intergenic 35.0%
! GCTGATTTCATAAGCTATCA+TGG + chr6_4:70137977-70137996 Msa0994850:intron 35.0%
AAACACTCACAAGACTGTTT+GGG - chr6_4:70138038-70138057 None:intergenic 35.0%
TAAACACTCACAAGACTGTT+TGG - chr6_4:70138039-70138058 None:intergenic 35.0%
AGTTATTTAAGCTTATCCGG+TGG - chr6_4:70138064-70138083 None:intergenic 35.0%
!!! GTTTTTGCTGATTTTTCTCC+AGG + chr6_4:70138199-70138218 Msa0994850:intron 35.0%
!! ACTTTTCAAGAGAATCAACC+TGG - chr6_4:70138220-70138239 None:intergenic 35.0%
CTTGATGCATGTAAGAGAAT+TGG + chr6_4:70138251-70138270 Msa0994850:CDS 35.0%
GAATCATTCCTTTGTTCTCT+TGG + chr6_4:70138309-70138328 Msa0994850:CDS 35.0%
GCACATGGTATGAAAGATTA+AGG - chr6_4:70138374-70138393 None:intergenic 35.0%
TAATCTTTCATACCATGTGC+TGG + chr6_4:70138374-70138393 Msa0994850:intron 35.0%
!! TTTTGATTCAATCCAGCACA+TGG - chr6_4:70138389-70138408 None:intergenic 35.0%
!!! CGTTTTTTGAATGGCTTACT+AGG - chr6_4:70138533-70138552 None:intergenic 35.0%
AGTTAGTAGTCTAGTCCATT+CGG - chr6_4:70138883-70138902 None:intergenic 35.0%
TAGAAACTTAAAGGGCCAAA+TGG + chr6_4:70138903-70138922 Msa0994850:intron 35.0%
TTCAATCACATGTCAAGTCA+AGG - chr6_4:70139027-70139046 None:intergenic 35.0%
GCCTAAATCGAATTCTTACA+AGG - chr6_4:70139060-70139079 None:intergenic 35.0%
GAAATTAGCAGTGTATTGCA+GGG - chr6_4:70139102-70139121 None:intergenic 35.0%
AGAAATTAGCAGTGTATTGC+AGG - chr6_4:70139103-70139122 None:intergenic 35.0%
AGATTTAGGGAAAGAGACAT+TGG - chr6_4:70139246-70139265 None:intergenic 35.0%
CCATATCTCATACAATATGG+TGG - chr6_4:70139563-70139582 None:intergenic 35.0%
CCACCATATTGTATGAGATA+TGG + chr6_4:70139560-70139579 Msa0994850:intron 35.0%
TATGGTCTGAAGATGAGTTT+AGG + chr6_4:70139578-70139597 Msa0994850:intron 35.0%
CAAACTTAACCCTACAAAAC+CGG - chr6_4:70139625-70139644 None:intergenic 35.0%
!! ACCTTATAAGTCGGTTTTGT+GGG + chr6_4:70139800-70139819 Msa0994850:intron 35.0%
GACTATATCTCATCCAATGT+GGG - chr6_4:70139945-70139964 None:intergenic 35.0%
AGACTATATCTCATCCAATG+TGG - chr6_4:70139946-70139965 None:intergenic 35.0%
CTAACTCAACCATACAAAAC+CGG - chr6_4:70140009-70140028 None:intergenic 35.0%
AACTTCTTTCCTAACACCTA+CGG + chr6_4:70140097-70140116 Msa0994850:intron 35.0%
AAACAAATACCGTAGGTGTT+AGG - chr6_4:70140109-70140128 None:intergenic 35.0%
TCTCCATTTGAAAGTCCATT+GGG - chr6_4:70140196-70140215 None:intergenic 35.0%
ATCTCCATTTGAAAGTCCAT+TGG - chr6_4:70140197-70140216 None:intergenic 35.0%
TGCCCTAAATGATAACCAAA+TGG + chr6_4:70140240-70140259 Msa0994850:three_prime_UTR 35.0%
TCTCCTGTATCATTTCCATT+TGG - chr6_4:70140258-70140277 None:intergenic 35.0%
!! AAAGTACAGTGTTGATTGCT+TGG + chr6_4:70140401-70140420 Msa0994850:intron 35.0%
GAGAGCTTATGTAAATAAGC+TGG + chr6_4:70140637-70140656 Msa0994850:intron 35.0%
AAGAACTTTGTCCAGAAAAG+AGG + chr6_4:70141212-70141231 Msa0994850:three_prime_UTR 35.0%
!!! CCAATTATTTTTGGGAGCTT+TGG - chr6_4:70141250-70141269 None:intergenic 35.0%
CCAAAGCTCCCAAAAATAAT+TGG + chr6_4:70141247-70141266 Msa0994850:three_prime_UTR 35.0%
! GGGTCTGAACCAATTATTTT+TGG - chr6_4:70141259-70141278 None:intergenic 35.0%
ACCTTATTCGATCTTCAAGA+GGG - chr6_4:70141279-70141298 None:intergenic 35.0%
GATCGAATAAGGTCTATACA+TGG + chr6_4:70141286-70141305 Msa0994850:three_prime_UTR 35.0%
AAGGTCTATACATGGTGATA+TGG + chr6_4:70141294-70141313 Msa0994850:three_prime_UTR 35.0%
AGGTCTATACATGGTGATAT+GGG + chr6_4:70141295-70141314 Msa0994850:three_prime_UTR 35.0%
GCACTTTAGGTATGAAAGTT+TGG - chr6_4:70141412-70141431 None:intergenic 35.0%
AATGGAGTTGACATAATTGC+AGG + chr6_4:70141475-70141494 Msa0994850:intron 35.0%
ACATAATTGCAGGTATGTAC+AGG + chr6_4:70141485-70141504 Msa0994850:intron 35.0%
ATTATTACTCTGTCAATCCC+AGG + chr6_4:70141628-70141647 Msa0994850:three_prime_UTR 35.0%
! TGATGAGAATTTGAAGTGGG+TGG + chr6_4:70137128-70137147 Msa0994850:CDS 40.0%
TAAGGATGATGTCCTTCTTG+TGG + chr6_4:70137173-70137192 Msa0994850:CDS 40.0%
GCGAGGGACAAAATTATGTA+AGG + chr6_4:70137307-70137326 Msa0994850:intron 40.0%
AATTCTGGATGACGACATCA+AGG + chr6_4:70137519-70137538 Msa0994850:intron 40.0%
ATGTCTCGACAATCACAAAG+TGG + chr6_4:70137548-70137567 Msa0994850:intron 40.0%
! CACAAAGTGGCTTGTGATTA+AGG + chr6_4:70137561-70137580 Msa0994850:intron 40.0%
CAAAGACACCTCAATCTTTG+AGG - chr6_4:70137703-70137722 None:intergenic 40.0%
!!! GTGTCTTTGTTTTAGTCGTC+TGG + chr6_4:70137714-70137733 Msa0994850:intron 40.0%
! ATTGCACCCTGATTTTCTGT+TGG + chr6_4:70137831-70137850 Msa0994850:intron 40.0%
! TTGCACCCTGATTTTCTGTT+GGG + chr6_4:70137832-70137851 Msa0994850:intron 40.0%
CAAATACAGACGTGCACTAA+AGG - chr6_4:70138100-70138119 None:intergenic 40.0%
CAACAAAGTTTATGGGAACG+AGG - chr6_4:70138158-70138177 None:intergenic 40.0%
TGGAGTAGAGACAAATCCAA+CGG + chr6_4:70138271-70138290 Msa0994850:CDS 40.0%
TCATGGTACCAAGAGAACAA+AGG - chr6_4:70138320-70138339 None:intergenic 40.0%
TTTGTTCTCTTGGTACCATG+AGG + chr6_4:70138319-70138338 Msa0994850:CDS 40.0%
CTACAGAAGTAATCACCTCA+TGG - chr6_4:70138337-70138356 None:intergenic 40.0%
GGTGATTACTTCTGTAGTGT+CGG + chr6_4:70138340-70138359 Msa0994850:intron 40.0%
! TTCACAGAGCTTTGACAAAG+AGG + chr6_4:70138450-70138469 Msa0994850:intron 40.0%
ATAGTCACCATCTCCAAAGA+CGG - chr6_4:70138499-70138518 None:intergenic 40.0%
ATCATGCGCTTAATTTCCCA+TGG + chr6_4:70138568-70138587 Msa0994850:three_prime_UTR 40.0%
TTTCCCATGGTGCTTGATTA+AGG + chr6_4:70138581-70138600 Msa0994850:three_prime_UTR 40.0%
AGTCCTTAATCAAGCACCAT+GGG - chr6_4:70138587-70138606 None:intergenic 40.0%
TAGTCCTTAATCAAGCACCA+TGG - chr6_4:70138588-70138607 None:intergenic 40.0%
AGAATAACAAACAGGCAGCT+AGG + chr6_4:70138805-70138824 Msa0994850:intron 40.0%
GAATAACAAACAGGCAGCTA+GGG + chr6_4:70138806-70138825 Msa0994850:intron 40.0%
!! AAAACCGGCTTGTAAGATGA+GGG - chr6_4:70139610-70139629 None:intergenic 40.0%
!! ATCTTACAAGCCGGTTTTGT+AGG + chr6_4:70139612-70139631 Msa0994850:intron 40.0%
!! TCTTACAAGCCGGTTTTGTA+GGG + chr6_4:70139613-70139632 Msa0994850:intron 40.0%
!! CGGTTTTGTAGGGTTAAGTT+TGG + chr6_4:70139623-70139642 Msa0994850:intron 40.0%
TTTATTGGGCCACCTGTTAT+CGG + chr6_4:70139665-70139684 Msa0994850:intron 40.0%
ACATCCATCACACCTAAAAC+TGG - chr6_4:70139715-70139734 None:intergenic 40.0%
ATGTGTTAAGAGTCCCACAT+TGG + chr6_4:70139731-70139750 Msa0994850:intron 40.0%
TAAGAGTCCCACATTGGATT+AGG + chr6_4:70139737-70139756 Msa0994850:intron 40.0%
AAGAGTCCCACATTGGATTA+GGG + chr6_4:70139738-70139757 Msa0994850:intron 40.0%
!! CACCTTATAAGTCGGTTTTG+TGG + chr6_4:70139799-70139818 Msa0994850:intron 40.0%
!! CCTTATAAGTCGGTTTTGTG+GGG + chr6_4:70139801-70139820 Msa0994850:intron 40.0%
ACCATCTTAGAATTTGGGCT+AGG - chr6_4:70139837-70139856 None:intergenic 40.0%
GTGTGTTAAGAATCCCACAT+TGG + chr6_4:70139929-70139948 Msa0994850:intron 40.0%
AAATCGTTCACCTTACAAGC+CGG + chr6_4:70139987-70140006 Msa0994850:intron 40.0%
!! CGGTTTTGTATGGTTGAGTT+AGG + chr6_4:70140007-70140026 Msa0994850:intron 40.0%
TAATCACCTGGGAACAAAGT+GGG - chr6_4:70140314-70140333 None:intergenic 40.0%
TTAATCACCTGGGAACAAAG+TGG - chr6_4:70140315-70140334 None:intergenic 40.0%
GTACGACAGATTAATCACCT+GGG - chr6_4:70140325-70140344 None:intergenic 40.0%
GCTCAGTGCGAAATTGTATA+TGG + chr6_4:70140480-70140499 Msa0994850:intron 40.0%
AAGCTGGAAACTATGAAGCA+CGG + chr6_4:70140653-70140672 Msa0994850:intron 40.0%
ATCACAAGTGTTTGTGCCAA+TGG + chr6_4:70140901-70140920 Msa0994850:intron 40.0%
TCAATCCAAACGAGCTTCTA+TGG + chr6_4:70140939-70140958 Msa0994850:intron 40.0%
ATAAGCCATAGAAGCTCGTT+TGG - chr6_4:70140947-70140966 None:intergenic 40.0%
AAACGAGCTTCTATGGCTTA+TGG + chr6_4:70140946-70140965 Msa0994850:intron 40.0%
CATACAATCATATGCCGTAC+AGG - chr6_4:70141000-70141019 None:intergenic 40.0%
GTACGGCATATGATTGTATG+AGG + chr6_4:70141000-70141019 Msa0994850:intron 40.0%
GGCAACACAACCACAAAAAA+CGG - chr6_4:70141098-70141117 None:intergenic 40.0%
ATGTTAGCATGCTTCTTCAC+AGG + chr6_4:70141188-70141207 Msa0994850:intron 40.0%
ACCCTCTTGAAGATCGAATA+AGG + chr6_4:70141275-70141294 Msa0994850:three_prime_UTR 40.0%
GACCTTATTCGATCTTCAAG+AGG - chr6_4:70141280-70141299 None:intergenic 40.0%
CTATACATGGTGATATGGGA+AGG + chr6_4:70141299-70141318 Msa0994850:three_prime_UTR 40.0%
GCATCTTCTTGTCATGTGTT+TGG + chr6_4:70141328-70141347 Msa0994850:three_prime_UTR 40.0%
TTGGTCATACTCACTTCTGT+TGG + chr6_4:70141347-70141366 Msa0994850:three_prime_UTR 40.0%
TGGTCATACTCACTTCTGTT+GGG + chr6_4:70141348-70141367 Msa0994850:three_prime_UTR 40.0%
ATGCTGTTGTAGATGGCATT+AGG + chr6_4:70141371-70141390 Msa0994850:three_prime_UTR 40.0%
GAGAGGAAGAGAAGAATGAA+TGG + chr6_4:70141528-70141547 Msa0994850:three_prime_UTR 40.0%
AGGAAGAGAAGAATGAATGG+AGG + chr6_4:70141531-70141550 Msa0994850:three_prime_UTR 40.0%
GGAAGAGAAGAATGAATGGA+GGG + chr6_4:70141532-70141551 Msa0994850:three_prime_UTR 40.0%
GAAGAGAAGAATGAATGGAG+GGG + chr6_4:70141533-70141552 Msa0994850:three_prime_UTR 40.0%
GAATGAATGGAGGGGAAAAT+TGG + chr6_4:70141541-70141560 Msa0994850:three_prime_UTR 40.0%
! TTAGTGTCATTAGGTGTCCT+GGG - chr6_4:70141648-70141667 None:intergenic 40.0%
! TTTAGTGTCATTAGGTGTCC+TGG - chr6_4:70141649-70141668 None:intergenic 40.0%
! GGAGCAAGTTTAGTGTCATT+AGG - chr6_4:70141657-70141676 None:intergenic 40.0%
! ATGACACTAAACTTGCTCCT+TGG + chr6_4:70141658-70141677 Msa0994850:three_prime_UTR 40.0%
! TGACACTAAACTTGCTCCTT+GGG + chr6_4:70141659-70141678 Msa0994850:three_prime_UTR 40.0%
TTGTAAAATCTGGCTACCCA+AGG - chr6_4:70141678-70141697 None:intergenic 40.0%
TTCCTGGGAATCATGACCTT+TGG + chr6_4:70137277-70137296 Msa0994850:CDS 45.0%
TACACTCGGGACTAAATCGA+GGG - chr6_4:70137419-70137438 None:intergenic 45.0%
GGTGAAGGGATAGATAGCTT+AGG + chr6_4:70137865-70137884 Msa0994850:intron 45.0%
CTTGTGAGTGTTTATGCCAC+CGG + chr6_4:70138045-70138064 Msa0994850:intron 45.0%
! ACGTGCACTAAAGGCTTGTT+TGG - chr6_4:70138091-70138110 None:intergenic 45.0%
AACGAGGAAAGCAGTAAGTC+TGG - chr6_4:70138142-70138161 None:intergenic 45.0%
AGAGACAAATCCAACGGTTG+TGG + chr6_4:70138277-70138296 Msa0994850:CDS 45.0%
GAGACAAATCCAACGGTTGT+GGG + chr6_4:70138278-70138297 Msa0994850:CDS 45.0%
! ACAGAGCTTTGACAAAGAGG+AGG + chr6_4:70138453-70138472 Msa0994850:intron 45.0%
GACAAAGAGGAGGACATAAC+AGG + chr6_4:70138463-70138482 Msa0994850:CDS 45.0%
TAGTCACCATCTCCAAAGAC+GGG - chr6_4:70138498-70138517 None:intergenic 45.0%
GAAAGAGACATGCTTTGTGC+TGG + chr6_4:70138742-70138761 Msa0994850:intron 45.0%
!! GGCAGCTAGGGTTTTATCAA+TGG + chr6_4:70138818-70138837 Msa0994850:intron 45.0%
CTTAAAGGGCCAAATGGCAT+AGG + chr6_4:70138909-70138928 Msa0994850:intron 45.0%
GTTATTGGGCCTATGCCATT+TGG - chr6_4:70138921-70138940 None:intergenic 45.0%
ACATCCCTCATCTTACAAGC+CGG + chr6_4:70139603-70139622 Msa0994850:intron 45.0%
!! CAAAACCGGCTTGTAAGATG+AGG - chr6_4:70139611-70139630 None:intergenic 45.0%
TCACACCTAAAACTGGACTC+TGG - chr6_4:70139708-70139727 None:intergenic 45.0%
!!! GAGTCCAGTTTTAGGTGTGA+TGG + chr6_4:70139708-70139727 Msa0994850:intron 45.0%
GCCTCTCTCACCTTATAAGT+CGG + chr6_4:70139791-70139810 Msa0994850:intron 45.0%
! ACCGACTTATAAGGTGAGAG+AGG - chr6_4:70139795-70139814 None:intergenic 45.0%
! CCCCACAAAACCGACTTATA+AGG - chr6_4:70139804-70139823 None:intergenic 45.0%
! GCCTAGCCCAAATTCTAAGA+TGG + chr6_4:70139833-70139852 Msa0994850:intron 45.0%
TCTACTAGGCCACCCATTAT+CGG + chr6_4:70139875-70139894 Msa0994850:intron 45.0%
!! CCATACAAAACCGGCTTGTA+AGG - chr6_4:70140000-70140019 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+TGG + chr6_4:70139997-70140016 Msa0994850:intron 45.0%
AGGACTTCCATGCATGTAAC+TGG + chr6_4:70140170-70140189 Msa0994850:three_prime_UTR 45.0%
! TGGCCCAATGGACTTTCAAA+TGG + chr6_4:70140190-70140209 Msa0994850:three_prime_UTR 45.0%
CGTACGACAGATTAATCACC+TGG - chr6_4:70140326-70140345 None:intergenic 45.0%
TATGAAGCACGGACACTTCT+TGG + chr6_4:70140664-70140683 Msa0994850:intron 45.0%
! TTCTTGGATTAGGCGTGTCT+TGG + chr6_4:70140680-70140699 Msa0994850:intron 45.0%
GATTAGGCGTGTCTTGGTAT+TGG + chr6_4:70140686-70140705 Msa0994850:intron 45.0%
! TTTTTCCAGCCTATGGAGCA+AGG - chr6_4:70140829-70140848 None:intergenic 45.0%
ACATGGTGATATGGGAAGGA+AGG + chr6_4:70141303-70141322 Msa0994850:three_prime_UTR 45.0%
TGTTGGGATGCTGTTGTAGA+TGG + chr6_4:70141364-70141383 Msa0994850:three_prime_UTR 45.0%
TTCTTCTCTTCCTCTCCCTT+GGG - chr6_4:70141524-70141543 None:intergenic 45.0%
ATTCTTCTCTTCCTCTCCCT+TGG - chr6_4:70141525-70141544 None:intergenic 45.0%
!! GGTTAGCATTGATGGTGGTG+AGG + chr6_4:70136911-70136930 Msa0994850:exon 50.0%
!! TCTTCTGCTTTAGGGGACAG+CGG + chr6_4:70137063-70137082 Msa0994850:CDS 50.0%
GATGATGTCCTTCTTGTGGC+TGG + chr6_4:70137177-70137196 Msa0994850:CDS 50.0%
CAACATCACCAGCCACAAGA+AGG - chr6_4:70137188-70137207 None:intergenic 50.0%
CACCAAAGGTCATGATTCCC+AGG - chr6_4:70137282-70137301 None:intergenic 50.0%
CTACACTCGGGACTAAATCG+AGG - chr6_4:70137420-70137439 None:intergenic 50.0%
GTGATTAAGGCTGCATCAGC+CGG + chr6_4:70137574-70137593 Msa0994850:intron 50.0%
! AGACATGCTTTGTGCTGGTC+TGG + chr6_4:70138747-70138766 Msa0994850:intron 50.0%
! ACGCTCCAGAGTCCAGTTTT+AGG + chr6_4:70139700-70139719 Msa0994850:intron 50.0%
! GTCCCACATTGGATTAGGGA+TGG + chr6_4:70139742-70139761 Msa0994850:intron 50.0%
GGCCATCCCTAATCCAATGT+GGG - chr6_4:70139747-70139766 None:intergenic 50.0%
AGGCCATCCCTAATCCAATG+TGG - chr6_4:70139748-70139767 None:intergenic 50.0%
!! CGGTTTTGTGGGGTCAAGTA+AGG + chr6_4:70139811-70139830 Msa0994850:intron 50.0%
CTACTAGGCCACCCATTATC+GGG + chr6_4:70139876-70139895 Msa0994850:intron 50.0%
CATTGGGCCAGTTACATGCA+TGG - chr6_4:70140180-70140199 None:intergenic 50.0%
CATGCATGTAACTGGCCCAA+TGG + chr6_4:70140178-70140197 Msa0994850:three_prime_UTR 50.0%
CCTGGGAACAAAGTGGGAAA+AGG - chr6_4:70140308-70140327 None:intergenic 50.0%
! CCTTTTCCCACTTTGTTCCC+AGG + chr6_4:70140305-70140324 Msa0994850:three_prime_UTR 50.0%
GCACGGACACTTCTTGGATT+AGG + chr6_4:70140670-70140689 Msa0994850:intron 50.0%
TGTCCGTATCCTTGCTCCAT+AGG + chr6_4:70140817-70140836 Msa0994850:intron 50.0%
CAGCCTATGGAGCAAGGATA+CGG - chr6_4:70140823-70140842 None:intergenic 50.0%
CTCTCCCTTGGGTAAGCTAA+GGG - chr6_4:70141513-70141532 None:intergenic 50.0%
CCTAATGCACCCACAACCGT+TGG - chr6_4:70138290-70138309 None:intergenic 55.0%
CCAACGGTTGTGGGTGCATT+AGG + chr6_4:70138287-70138306 Msa0994850:CDS 55.0%
AGGCTATCGCATCCCGTCTT+TGG + chr6_4:70138483-70138502 Msa0994850:CDS 55.0%
! TCGCATCCCGTCTTTGGAGA+TGG + chr6_4:70138489-70138508 Msa0994850:CDS 55.0%
CCACCTGTTATCGGACCACT+CGG + chr6_4:70139674-70139693 Msa0994850:intron 55.0%
CACCTGTTATCGGACCACTC+GGG + chr6_4:70139675-70139694 Msa0994850:intron 55.0%
GGACGGAGAGACCCGATAAT+GGG - chr6_4:70139890-70139909 None:intergenic 55.0%
TGGACGGAGAGACCCGATAA+TGG - chr6_4:70139891-70139910 None:intergenic 55.0%
ACATCCCTCACACCCAAGAC+TGG - chr6_4:70139911-70139930 None:intergenic 55.0%
TACGGACACAAGGCACGACA+CGG - chr6_4:70140805-70140824 None:intergenic 55.0%
GGAGCAAGGATACGGACACA+AGG - chr6_4:70140815-70140834 None:intergenic 55.0%
CGTATCCTTGCTCCATAGGC+TGG + chr6_4:70140821-70140840 Msa0994850:intron 55.0%
AGGCACCCTTAGCTTACCCA+AGG + chr6_4:70141505-70141524 Msa0994850:three_prime_UTR 55.0%
GGCACCCTTAGCTTACCCAA+GGG + chr6_4:70141506-70141525 Msa0994850:three_prime_UTR 55.0%
CCTCTCCCTTGGGTAAGCTA+AGG - chr6_4:70141514-70141533 None:intergenic 55.0%
CCTTAGCTTACCCAAGGGAG+AGG + chr6_4:70141511-70141530 Msa0994850:three_prime_UTR 55.0%
!! TCTGCTTTAGGGGACAGCGG+TGG + chr6_4:70137066-70137085 Msa0994850:CDS 60.0%
!! CTGCTTTAGGGGACAGCGGT+GGG + chr6_4:70137067-70137086 Msa0994850:CDS 60.0%
!! CGGTGGGTTGCGTGTGTTTG+TGG + chr6_4:70137083-70137102 Msa0994850:CDS 60.0%
!! TGACCTTTGGTGTCGTCGCG+AGG + chr6_4:70137290-70137309 Msa0994850:CDS 60.0%
!! GACCTTTGGTGTCGTCGCGA+GGG + chr6_4:70137291-70137310 Msa0994850:CDS 60.0%
CCGAGTGGTCCGATAACAGG+TGG - chr6_4:70139677-70139696 None:intergenic 60.0%
GACCCGAGTGGTCCGATAAC+AGG - chr6_4:70139680-70139699 None:intergenic 60.0%
!! CGGAGAGACCCGATAATGGG+TGG - chr6_4:70139887-70139906 None:intergenic 60.0%
GGGTCTCTCCGTCCAGTCTT+GGG + chr6_4:70139896-70139915 Msa0994850:intron 60.0%
TCCGTCCAGTCTTGGGTGTG+AGG + chr6_4:70139903-70139922 Msa0994850:intron 60.0%
CCCTCACACCCAAGACTGGA+CGG - chr6_4:70139907-70139926 None:intergenic 60.0%
CCGTCCAGTCTTGGGTGTGA+GGG + chr6_4:70139904-70139923 Msa0994850:intron 60.0%
GTCCCTCGCGACGACACCAA+AGG - chr6_4:70137296-70137315 None:intergenic 65.0%
!! ACTCTGGAGCGTGACCCGAG+TGG - chr6_4:70139692-70139711 None:intergenic 65.0%
CGGGTCTCTCCGTCCAGTCT+TGG + chr6_4:70139895-70139914 Msa0994850:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 70136651 70141782 70136651 ID=Msa0994850;Name=Msa0994850
chr6_4 mRNA 70136651 70141782 70136651 ID=Msa0994850-mRNA-1;Parent=Msa0994850;Name=Msa0994850-mRNA-1;_AED=0.02;_eAED=0.02;_QI=111|1|1|1|0.66|0.57|7|741|199
chr6_4 exon 70136651 70136738 70136651 ID=Msa0994850-mRNA-1:exon:13018;Parent=Msa0994850-mRNA-1
chr6_4 exon 70136899 70137323 70136899 ID=Msa0994850-mRNA-1:exon:13019;Parent=Msa0994850-mRNA-1
chr6_4 exon 70138221 70138340 70138221 ID=Msa0994850-mRNA-1:exon:13020;Parent=Msa0994850-mRNA-1
chr6_4 exon 70138457 70138642 70138457 ID=Msa0994850-mRNA-1:exon:13021;Parent=Msa0994850-mRNA-1
chr6_4 exon 70140163 70140326 70140163 ID=Msa0994850-mRNA-1:exon:13022;Parent=Msa0994850-mRNA-1
chr6_4 exon 70141210 70141392 70141210 ID=Msa0994850-mRNA-1:exon:13023;Parent=Msa0994850-mRNA-1
chr6_4 exon 70141497 70141782 70141497 ID=Msa0994850-mRNA-1:exon:13024;Parent=Msa0994850-mRNA-1
chr6_4 five_prime_UTR 70136651 70136738 70136651 ID=Msa0994850-mRNA-1:five_prime_utr;Parent=Msa0994850-mRNA-1
chr6_4 five_prime_UTR 70136899 70136921 70136899 ID=Msa0994850-mRNA-1:five_prime_utr;Parent=Msa0994850-mRNA-1
chr6_4 CDS 70136922 70137323 70136922 ID=Msa0994850-mRNA-1:cds;Parent=Msa0994850-mRNA-1
chr6_4 CDS 70138221 70138340 70138221 ID=Msa0994850-mRNA-1:cds;Parent=Msa0994850-mRNA-1
chr6_4 CDS 70138457 70138534 70138457 ID=Msa0994850-mRNA-1:cds;Parent=Msa0994850-mRNA-1
chr6_4 three_prime_UTR 70138535 70138642 70138535 ID=Msa0994850-mRNA-1:three_prime_utr;Parent=Msa0994850-mRNA-1
chr6_4 three_prime_UTR 70140163 70140326 70140163 ID=Msa0994850-mRNA-1:three_prime_utr;Parent=Msa0994850-mRNA-1
chr6_4 three_prime_UTR 70141210 70141392 70141210 ID=Msa0994850-mRNA-1:three_prime_utr;Parent=Msa0994850-mRNA-1
chr6_4 three_prime_UTR 70141497 70141782 70141497 ID=Msa0994850-mRNA-1:three_prime_utr;Parent=Msa0994850-mRNA-1
Gene Sequence

>Msa0994850

ATGGTGGTGAGGTTTAGCCCTTTTTCTCTAACACTGTCACAACAGCCTCATAATCATCAATCTTCATGTTTCTCTAAACAATTGACTGTTAGCTGCAATTATGGAATGAAAAGGTTTGATCTTGGAAGACAACAAATACTGTCTTCTGCTTTAGGGGACAGCGGTGGGTTGCGTGTGTTTGTGGTTTCTGATTTGCATACTGATTATGATGAGAATTTGAAGTGGGTGGAGTGTTTGTCATCTGTGAATTATAAGGATGATGTCCTTCTTGTGGCTGGTGATGTTGCTGAGACATATAATATGTTTTTTGTTACAATGTCTCTTTTGAGAGAGAGATTTGAACATGTTTTCTATGTTCCTGGGAATCATGACCTTTGGTGTCGTCGCGAGGGACAAAATTATGTTGATTCTCTTGAAAAGTTTAACAAGTTGCTTGATGCATGTAAGAGAATTGGAGTAGAGACAAATCCAACGGTTGTGGGTGCATTAGGAATCATTCCTTTGTTCTCTTGGTACCATGAGAGCTTTGACAAAGAGGAGGACATAACAGGCTATCGCATCCCGTCTTTGGAGATGGTGACTATTCTCTTAAACTCCTAG
Protein sequence

>Msa0994850

MVVRFSPFSLTLSQQPHNHQSSCFSKQLTVSCNYGMKRFDLGRQQILSSALGDSGGLRVFVVSDLHTDYDENLKWVECLSSVNYKDDVLLVAGDVAETYNMFFVTMSLLRERFEHVFYVPGNHDLWCRREGQNYVDSLEKFNKLLDACKRIGVETNPTVVGALGIIPLFSWYHESFDKEEDITGYRIPSLEMVTILLNS*