AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0404030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404030 MtrunA17_Chr3g0109561 98.780 82 1 0 1 82 1 82 7.09e-55 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404030 AT4G21192.1 75.000 80 20 0 1 80 1 80 3.39e-42 132
Msa0404030 AT4G21192.2 75.000 80 20 0 1 80 1 80 3.39e-42 132

Find 38 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACATGTTCCTTCATTATC+AGG 0.186242 3_2:+34686195 None:intergenic
AAAATTTAATGTAACATATT+GGG 0.235555 3_2:-34686340 Msa0404030:three_prime_UTR
CATCCTATTGCAAAATTCTT+TGG 0.235808 3_2:-34686947 Msa0404030:CDS
ATTAGACAAATTTACAATTC+AGG 0.239321 3_2:-34688421 None:intergenic
TACAGAATTGAAAATAAAAT+TGG 0.247760 3_2:-34686918 Msa0404030:CDS
AGACCAAATTTCTAGTATTT+AGG 0.278311 3_2:-34686398 Msa0404030:three_prime_UTR
GGATGTTTGTGCAATGTTAA+AGG 0.281917 3_2:+34687691 None:intergenic
GTGCCTAAATACTAGAAATT+TGG 0.309764 3_2:+34686395 None:intergenic
CCTGGAGAAGGGAAAGAAAA+TGG 0.310262 3_2:+34688380 None:intergenic
TCAGATACCTATCATATAAT+AGG 0.331996 3_2:-34686466 Msa0404030:three_prime_UTR
TGAATTGCAGGAGAAGGTTT+TGG 0.348646 3_2:-34687747 Msa0404030:five_prime_UTR
TAGTGGGATAGTTGAATTGC+AGG 0.380257 3_2:-34687759 Msa0404030:intron
TTAGACAAATTTACAATTCA+GGG 0.384978 3_2:-34688420 None:intergenic
ACATCATCCTATTATATGAT+AGG 0.413026 3_2:+34686459 None:intergenic
CAGCAGTCAATAGAAATAGA+AGG 0.433741 3_2:-34686670 Msa0404030:exon
AAAGCCATTATACAAAACTA+AGG 0.469743 3_2:+34686527 None:intergenic
AACATGTTCCTTCATTATCA+GGG 0.488395 3_2:+34686196 None:intergenic
GTGTGCAAGCACTATACATT+TGG 0.489849 3_2:-34686296 Msa0404030:three_prime_UTR
GTGATTATACAAGACTAGTT+CGG 0.492156 3_2:+34686422 None:intergenic
AAATTTAATGTAACATATTG+GGG 0.492689 3_2:-34686339 Msa0404030:three_prime_UTR
CGAGCCATTGTACAAAACTA+AGG 0.498044 3_2:+34686600 None:intergenic
ATCAGAGTTTCAGATGATCC+TGG 0.502693 3_2:+34688362 None:intergenic
ACACATGGGTTAGCCTTGTA+TGG 0.506872 3_2:+34686265 None:intergenic
AGATGCAAAATTGCGATGGA+AGG 0.540762 3_2:+34688334 None:intergenic
GTTTCAGATGATCCTGGAGA+AGG 0.550355 3_2:+34688368 None:intergenic
ACAGAAAGCTGTGAAGAGAA+AGG 0.562696 3_2:-34686760 Msa0404030:intron
TTTCAGATGATCCTGGAGAA+GGG 0.573076 3_2:+34688369 None:intergenic
TGAAAAGAGCAAAGAACTCA+AGG 0.575643 3_2:-34686730 Msa0404030:CDS
GATAGTTGAATTGCAGGAGA+AGG 0.577716 3_2:-34687753 Msa0404030:intron
GATACCACCCCTGATAATGA+AGG 0.582672 3_2:-34686204 Msa0404030:three_prime_UTR
TACGAGATGCAAAATTGCGA+TGG 0.584864 3_2:+34688330 None:intergenic
TGTTCCTTCATTATCAGGGG+TGG 0.590108 3_2:+34686200 None:intergenic
GATGCAAAATTGCGATGGAA+GGG 0.590702 3_2:+34688335 None:intergenic
AAACTCACTTCAGCGCACAT+AGG 0.624864 3_2:+34687670 None:intergenic
ACATGTTCCTTCATTATCAG+GGG 0.631126 3_2:+34686197 None:intergenic
GTGCTTAATGCAGATTATCG+AGG 0.641500 3_2:-34686993 Msa0404030:intron
TGTTTGTGCAATGTTAAAGG+AGG 0.660285 3_2:+34687694 None:intergenic
GGAGTTTCAGAAGTGTCATG+TGG 0.660393 3_2:-34686972 Msa0404030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAGTTTTTTCTTTT+TGG + chr3_2:34686729-34686748 None:intergenic 10.0%
!!! AATTTTTATTATTATTAGAG+GGG + chr3_2:34688252-34688271 None:intergenic 10.0%
!! AAAAATTTAATGTAACATAT+TGG - chr3_2:34688265-34688284 Msa0404030:intron 10.0%
!! AAAATTTAATGTAACATATT+GGG - chr3_2:34688266-34688285 Msa0404030:intron 10.0%
!!! TTTTTATAGTTTTTTCTTTT+TGG + chr3_2:34686729-34686748 None:intergenic 10.0%
!!! AATTTTTATTATTATTAGAG+GGG + chr3_2:34688252-34688271 None:intergenic 10.0%
!! AAAAATTTAATGTAACATAT+TGG - chr3_2:34688265-34688284 Msa0404030:intron 10.0%
!! AAAATTTAATGTAACATATT+GGG - chr3_2:34688266-34688285 Msa0404030:intron 10.0%
!! AAAAAAATCATTACTATTGA+GGG + chr3_2:34686340-34686359 None:intergenic 15.0%
!! AAAAAAAATCATTACTATTG+AGG + chr3_2:34686341-34686360 None:intergenic 15.0%
!! ACAAATACATGAAAAAAATT+GGG + chr3_2:34686431-34686450 None:intergenic 15.0%
!!! TCCATTTTTTATTTTGTTTT+TGG - chr3_2:34686787-34686806 Msa0404030:intron 15.0%
!! ACCAAAAACAAAATAAAAAA+TGG + chr3_2:34686791-34686810 None:intergenic 15.0%
!! TACAGAATTGAAAATAAAAT+TGG - chr3_2:34687688-34687707 Msa0404030:CDS 15.0%
!! GAACTTTAACATAAAAAATA+AGG + chr3_2:34687767-34687786 None:intergenic 15.0%
!!! ATTTTTATTATTATTAGAGG+GGG + chr3_2:34688251-34688270 None:intergenic 15.0%
!! AAATTTAATGTAACATATTG+GGG - chr3_2:34688267-34688286 Msa0404030:intron 15.0%
!! AAAAAAATCATTACTATTGA+GGG + chr3_2:34686340-34686359 None:intergenic 15.0%
!! AAAAAAAATCATTACTATTG+AGG + chr3_2:34686341-34686360 None:intergenic 15.0%
!! ACAAATACATGAAAAAAATT+GGG + chr3_2:34686431-34686450 None:intergenic 15.0%
!!! TCCATTTTTTATTTTGTTTT+TGG - chr3_2:34686787-34686806 Msa0404030:intron 15.0%
!! ACCAAAAACAAAATAAAAAA+TGG + chr3_2:34686791-34686810 None:intergenic 15.0%
!! TACAGAATTGAAAATAAAAT+TGG - chr3_2:34687688-34687707 Msa0404030:CDS 15.0%
!! GAACTTTAACATAAAAAATA+AGG + chr3_2:34687767-34687786 None:intergenic 15.0%
!!! ATTTTTATTATTATTAGAGG+GGG + chr3_2:34688251-34688270 None:intergenic 15.0%
!! AAATTTAATGTAACATATTG+GGG - chr3_2:34688267-34688286 Msa0404030:intron 15.0%
!! CACAAATACATGAAAAAAAT+TGG + chr3_2:34686432-34686451 None:intergenic 20.0%
!!! AATTTTATATGGTTCTTGTA+TGG + chr3_2:34686563-34686582 None:intergenic 20.0%
!!! TTAATGTTGGCAATTTTATA+TGG + chr3_2:34686574-34686593 None:intergenic 20.0%
!! TTTGAATTGAACATAATAGT+GGG - chr3_2:34686831-34686850 Msa0404030:intron 20.0%
!! TCATAAACAAAACCTTATAT+TGG - chr3_2:34687121-34687140 Msa0404030:intron 20.0%
!! TTATATTGGAACATTGAAAT+GGG - chr3_2:34687135-34687154 Msa0404030:intron 20.0%
!!! ATAACACTTGTTAGATTATT+TGG - chr3_2:34687211-34687230 Msa0404030:intron 20.0%
!!! TAACACTTGTTAGATTATTT+GGG - chr3_2:34687212-34687231 Msa0404030:intron 20.0%
!!! AATTGATTCTAAATCCATTA+TGG + chr3_2:34687501-34687520 None:intergenic 20.0%
!!! GATAATTTATCTTTTTCCTT+TGG - chr3_2:34687539-34687558 Msa0404030:intron 20.0%
!! ATGGAAAAAATTGATACATA+TGG + chr3_2:34688045-34688064 None:intergenic 20.0%
!!! TTTTTATTATTATTAGAGGG+GGG + chr3_2:34688250-34688269 None:intergenic 20.0%
!! CACAAATACATGAAAAAAAT+TGG + chr3_2:34686432-34686451 None:intergenic 20.0%
!!! AATTTTATATGGTTCTTGTA+TGG + chr3_2:34686563-34686582 None:intergenic 20.0%
!!! TTAATGTTGGCAATTTTATA+TGG + chr3_2:34686574-34686593 None:intergenic 20.0%
!! TTTGAATTGAACATAATAGT+GGG - chr3_2:34686831-34686850 Msa0404030:intron 20.0%
!! TCATAAACAAAACCTTATAT+TGG - chr3_2:34687121-34687140 Msa0404030:intron 20.0%
!! TTATATTGGAACATTGAAAT+GGG - chr3_2:34687135-34687154 Msa0404030:intron 20.0%
!!! ATAACACTTGTTAGATTATT+TGG - chr3_2:34687211-34687230 Msa0404030:intron 20.0%
!!! TAACACTTGTTAGATTATTT+GGG - chr3_2:34687212-34687231 Msa0404030:intron 20.0%
!!! AATTGATTCTAAATCCATTA+TGG + chr3_2:34687501-34687520 None:intergenic 20.0%
!!! GATAATTTATCTTTTTCCTT+TGG - chr3_2:34687539-34687558 Msa0404030:intron 20.0%
!! ATGGAAAAAATTGATACATA+TGG + chr3_2:34688045-34688064 None:intergenic 20.0%
!!! TTTTTATTATTATTAGAGGG+GGG + chr3_2:34688250-34688269 None:intergenic 20.0%
! TTTACATGGCATATTAATGT+TGG + chr3_2:34686587-34686606 None:intergenic 25.0%
! CTTTGAATTGAACATAATAG+TGG - chr3_2:34686830-34686849 Msa0404030:intron 25.0%
! GAAATTAGTAGTTGAAAGTT+TGG - chr3_2:34687098-34687117 Msa0404030:intron 25.0%
! CATTTCAATGTTCCAATATA+AGG + chr3_2:34687136-34687155 None:intergenic 25.0%
! CTTATATTGGAACATTGAAA+TGG - chr3_2:34687134-34687153 Msa0404030:intron 25.0%
!! TAAGGATTGTATTTTGCAAA+TGG + chr3_2:34688064-34688083 None:intergenic 25.0%
!!! CAATCCTTAGTTTTGTATAA+TGG - chr3_2:34688075-34688094 Msa0404030:intron 25.0%
! AAAGCCATTATACAAAACTA+AGG + chr3_2:34688082-34688101 None:intergenic 25.0%
! TCAGATACCTATCATATAAT+AGG - chr3_2:34688140-34688159 Msa0404030:intron 25.0%
! ACATCATCCTATTATATGAT+AGG + chr3_2:34688150-34688169 None:intergenic 25.0%
!!! AGACCAAATTTCTAGTATTT+AGG - chr3_2:34688208-34688227 Msa0404030:intron 25.0%
! TTTACATGGCATATTAATGT+TGG + chr3_2:34686587-34686606 None:intergenic 25.0%
! CTTTGAATTGAACATAATAG+TGG - chr3_2:34686830-34686849 Msa0404030:intron 25.0%
! GAAATTAGTAGTTGAAAGTT+TGG - chr3_2:34687098-34687117 Msa0404030:intron 25.0%
! CATTTCAATGTTCCAATATA+AGG + chr3_2:34687136-34687155 None:intergenic 25.0%
! CTTATATTGGAACATTGAAA+TGG - chr3_2:34687134-34687153 Msa0404030:intron 25.0%
!! TAAGGATTGTATTTTGCAAA+TGG + chr3_2:34688064-34688083 None:intergenic 25.0%
!!! CAATCCTTAGTTTTGTATAA+TGG - chr3_2:34688075-34688094 Msa0404030:intron 25.0%
! AAAGCCATTATACAAAACTA+AGG + chr3_2:34688082-34688101 None:intergenic 25.0%
! TCAGATACCTATCATATAAT+AGG - chr3_2:34688140-34688159 Msa0404030:intron 25.0%
! ACATCATCCTATTATATGAT+AGG + chr3_2:34688150-34688169 None:intergenic 25.0%
!!! AGACCAAATTTCTAGTATTT+AGG - chr3_2:34688208-34688227 Msa0404030:intron 25.0%
TTTCAAGCATTTCATCAAAC+AGG + chr3_2:34686387-34686406 None:intergenic 30.0%
CAAATTATAGCTCGTTTACA+TGG + chr3_2:34686601-34686620 None:intergenic 30.0%
!!! GTTTTTTCTTTTTGGAAACC+CGG + chr3_2:34686721-34686740 None:intergenic 30.0%
CATCCTATTGCAAAATTCTT+TGG - chr3_2:34687659-34687678 Msa0404030:intron 30.0%
AGATGAAAATTACTTACCAC+AGG + chr3_2:34687816-34687835 None:intergenic 30.0%
! TTCTTTGCTCTTTTCAAAGT+TGG + chr3_2:34687872-34687891 None:intergenic 30.0%
!!! CAATCCTTAGTTTTGTACAA+TGG - chr3_2:34688002-34688021 Msa0404030:intron 30.0%
! GTGATTATACAAGACTAGTT+CGG + chr3_2:34688187-34688206 None:intergenic 30.0%
GTGCCTAAATACTAGAAATT+TGG + chr3_2:34688214-34688233 None:intergenic 30.0%
TTACAGAAAAAGTGACACAT+GGG + chr3_2:34688358-34688377 None:intergenic 30.0%
ATTACAGAAAAAGTGACACA+TGG + chr3_2:34688359-34688378 None:intergenic 30.0%
AACATGTTCCTTCATTATCA+GGG + chr3_2:34688413-34688432 None:intergenic 30.0%
AAACATGTTCCTTCATTATC+AGG + chr3_2:34688414-34688433 None:intergenic 30.0%
TTTCAAGCATTTCATCAAAC+AGG + chr3_2:34686387-34686406 None:intergenic 30.0%
CAAATTATAGCTCGTTTACA+TGG + chr3_2:34686601-34686620 None:intergenic 30.0%
!!! GTTTTTTCTTTTTGGAAACC+CGG + chr3_2:34686721-34686740 None:intergenic 30.0%
CATCCTATTGCAAAATTCTT+TGG - chr3_2:34687659-34687678 Msa0404030:intron 30.0%
AGATGAAAATTACTTACCAC+AGG + chr3_2:34687816-34687835 None:intergenic 30.0%
! TTCTTTGCTCTTTTCAAAGT+TGG + chr3_2:34687872-34687891 None:intergenic 30.0%
!!! CAATCCTTAGTTTTGTACAA+TGG - chr3_2:34688002-34688021 Msa0404030:intron 30.0%
! GTGATTATACAAGACTAGTT+CGG + chr3_2:34688187-34688206 None:intergenic 30.0%
GTGCCTAAATACTAGAAATT+TGG + chr3_2:34688214-34688233 None:intergenic 30.0%
TTACAGAAAAAGTGACACAT+GGG + chr3_2:34688358-34688377 None:intergenic 30.0%
ATTACAGAAAAAGTGACACA+TGG + chr3_2:34688359-34688378 None:intergenic 30.0%
AACATGTTCCTTCATTATCA+GGG + chr3_2:34688413-34688432 None:intergenic 30.0%
AAACATGTTCCTTCATTATC+AGG + chr3_2:34688414-34688433 None:intergenic 30.0%
GGAAAAAACGCGTATAAAAG+TGG + chr3_2:34686319-34686338 None:intergenic 35.0%
GATGAAATGCTTGAAACATG+CGG - chr3_2:34686391-34686410 Msa0404030:three_prime_UTR 35.0%
! GATGTCTTTAGAAGCACAAA+GGG + chr3_2:34686458-34686477 None:intergenic 35.0%
! TGATGTCTTTAGAAGCACAA+AGG + chr3_2:34686459-34686478 None:intergenic 35.0%
TGGTTCTTGTATGGAATATC+AGG + chr3_2:34686554-34686573 None:intergenic 35.0%
!! GAAGGTTTTGGTGATTGATT+TGG - chr3_2:34686871-34686890 Msa0404030:intron 35.0%
TGTTTGTGCAATGTTAAAGG+AGG + chr3_2:34686915-34686934 None:intergenic 35.0%
GGATGTTTGTGCAATGTTAA+AGG + chr3_2:34686918-34686937 None:intergenic 35.0%
ATATTTCCATGTCCATGTCA+TGG - chr3_2:34687068-34687087 Msa0404030:intron 35.0%
TATTTCCATGTCCATGTCAT+GGG - chr3_2:34687069-34687088 Msa0404030:intron 35.0%
ATTTCCATTATCCCATGACA+TGG + chr3_2:34687083-34687102 None:intergenic 35.0%
GAACATTGAAATGGGACTTA+GGG - chr3_2:34687143-34687162 Msa0404030:intron 35.0%
AACATTGAAATGGGACTTAG+GGG - chr3_2:34687144-34687163 Msa0404030:intron 35.0%
TAAGGAAATGCCAATTGACA+GGG + chr3_2:34687468-34687487 None:intergenic 35.0%
! TCGCCAAAGAATTTTGCAAT+AGG + chr3_2:34687665-34687684 None:intergenic 35.0%
!! CTTTGCTTTGAAGTTTGATC+TGG - chr3_2:34687786-34687805 Msa0404030:intron 35.0%
TGAAAAGAGCAAAGAACTCA+AGG - chr3_2:34687876-34687895 Msa0404030:intron 35.0%
! AGGAACAATTGCGAGTTTTA+AGG - chr3_2:34687896-34687915 Msa0404030:intron 35.0%
CAGCAGTCAATAGAAATAGA+AGG - chr3_2:34687936-34687955 Msa0404030:intron 35.0%
!!! TTTGGTTTTGTGACCATACA+AGG - chr3_2:34688328-34688347 Msa0404030:intron 35.0%
ACATGTTCCTTCATTATCAG+GGG + chr3_2:34688412-34688431 None:intergenic 35.0%
GGAAAAAACGCGTATAAAAG+TGG + chr3_2:34686319-34686338 None:intergenic 35.0%
GATGAAATGCTTGAAACATG+CGG - chr3_2:34686391-34686410 Msa0404030:three_prime_UTR 35.0%
! GATGTCTTTAGAAGCACAAA+GGG + chr3_2:34686458-34686477 None:intergenic 35.0%
! TGATGTCTTTAGAAGCACAA+AGG + chr3_2:34686459-34686478 None:intergenic 35.0%
TGGTTCTTGTATGGAATATC+AGG + chr3_2:34686554-34686573 None:intergenic 35.0%
!! GAAGGTTTTGGTGATTGATT+TGG - chr3_2:34686871-34686890 Msa0404030:intron 35.0%
TGTTTGTGCAATGTTAAAGG+AGG + chr3_2:34686915-34686934 None:intergenic 35.0%
GGATGTTTGTGCAATGTTAA+AGG + chr3_2:34686918-34686937 None:intergenic 35.0%
ATATTTCCATGTCCATGTCA+TGG - chr3_2:34687068-34687087 Msa0404030:intron 35.0%
TATTTCCATGTCCATGTCAT+GGG - chr3_2:34687069-34687088 Msa0404030:intron 35.0%
ATTTCCATTATCCCATGACA+TGG + chr3_2:34687083-34687102 None:intergenic 35.0%
GAACATTGAAATGGGACTTA+GGG - chr3_2:34687143-34687162 Msa0404030:intron 35.0%
AACATTGAAATGGGACTTAG+GGG - chr3_2:34687144-34687163 Msa0404030:intron 35.0%
TAAGGAAATGCCAATTGACA+GGG + chr3_2:34687468-34687487 None:intergenic 35.0%
! TCGCCAAAGAATTTTGCAAT+AGG + chr3_2:34687665-34687684 None:intergenic 35.0%
!! CTTTGCTTTGAAGTTTGATC+TGG - chr3_2:34687786-34687805 Msa0404030:intron 35.0%
TGAAAAGAGCAAAGAACTCA+AGG - chr3_2:34687876-34687895 Msa0404030:intron 35.0%
! AGGAACAATTGCGAGTTTTA+AGG - chr3_2:34687896-34687915 Msa0404030:intron 35.0%
CAGCAGTCAATAGAAATAGA+AGG - chr3_2:34687936-34687955 Msa0404030:intron 35.0%
!!! TTTGGTTTTGTGACCATACA+AGG - chr3_2:34688328-34688347 Msa0404030:intron 35.0%
ACATGTTCCTTCATTATCAG+GGG + chr3_2:34688412-34688431 None:intergenic 35.0%
TTTCAGATGATCCTGGAGAA+GGG + chr3_2:34686240-34686259 None:intergenic 40.0%
ATCAGAGTTTCAGATGATCC+TGG + chr3_2:34686247-34686266 None:intergenic 40.0%
GATGCAAAATTGCGATGGAA+GGG + chr3_2:34686274-34686293 None:intergenic 40.0%
AGATGCAAAATTGCGATGGA+AGG + chr3_2:34686275-34686294 None:intergenic 40.0%
TACGAGATGCAAAATTGCGA+TGG + chr3_2:34686279-34686298 None:intergenic 40.0%
TGATGAGCACAAACAAAGCT+TGG + chr3_2:34686364-34686383 None:intergenic 40.0%
TGTGCGAACAATTCCTATGT+TGG - chr3_2:34686626-34686645 Msa0404030:three_prime_UTR 40.0%
GTGCGAACAATTCCTATGTT+GGG - chr3_2:34686627-34686646 Msa0404030:three_prime_UTR 40.0%
!! AATTGGTCCTCTGGATTAGT+GGG - chr3_2:34686680-34686699 Msa0404030:CDS 40.0%
TCAAGACTAAAAGTAGCTGC+TGG - chr3_2:34686758-34686777 Msa0404030:CDS 40.0%
TAGTGGGATAGTTGAATTGC+AGG - chr3_2:34686847-34686866 Msa0404030:intron 40.0%
GATAGTTGAATTGCAGGAGA+AGG - chr3_2:34686853-34686872 Msa0404030:intron 40.0%
! TGAATTGCAGGAGAAGGTTT+TGG - chr3_2:34686859-34686878 Msa0404030:intron 40.0%
ATTATCCCATGACATGGACA+TGG + chr3_2:34687077-34687096 None:intergenic 40.0%
ATGTCCATGTCATGGGATAA+TGG - chr3_2:34687076-34687095 Msa0404030:intron 40.0%
GGAACATTGAAATGGGACTT+AGG - chr3_2:34687142-34687161 Msa0404030:intron 40.0%
AAATGGGACTTAGGGGAATA+GGG - chr3_2:34687151-34687170 Msa0404030:intron 40.0%
CAATACCTCTTAGTGGCTTA+AGG + chr3_2:34687428-34687447 None:intergenic 40.0%
TTATCTGTTGCCCTGTCAAT+TGG - chr3_2:34687455-34687474 Msa0404030:intron 40.0%
GTAAGGAAATGCCAATTGAC+AGG + chr3_2:34687469-34687488 None:intergenic 40.0%
CATTATGGAGTGCGAAAGTA+AGG + chr3_2:34687486-34687505 None:intergenic 40.0%
CTTACTTTCGCACTCCATAA+TGG - chr3_2:34687484-34687503 Msa0404030:intron 40.0%
CTGATAACTTTCAGCACCAA+AGG + chr3_2:34687558-34687577 None:intergenic 40.0%
!! CTTTGGTGCTGAAAGTTATC+AGG - chr3_2:34687556-34687575 Msa0404030:intron 40.0%
GTGCTTAATGCAGATTATCG+AGG - chr3_2:34687613-34687632 Msa0404030:intron 40.0%
!!! AGTTTGATCTGGTTTTCCTG+TGG - chr3_2:34687797-34687816 Msa0404030:intron 40.0%
TTCTCTTCACAGCTTTCTGT+TGG + chr3_2:34687846-34687865 None:intergenic 40.0%
ACAGAAAGCTGTGAAGAGAA+AGG - chr3_2:34687846-34687865 Msa0404030:intron 40.0%
CGAGCCATTGTACAAAACTA+AGG + chr3_2:34688009-34688028 None:intergenic 40.0%
GTGTGCAAGCACTATACATT+TGG - chr3_2:34688310-34688329 Msa0404030:intron 40.0%
TTTCAGATGATCCTGGAGAA+GGG + chr3_2:34686240-34686259 None:intergenic 40.0%
ATCAGAGTTTCAGATGATCC+TGG + chr3_2:34686247-34686266 None:intergenic 40.0%
GATGCAAAATTGCGATGGAA+GGG + chr3_2:34686274-34686293 None:intergenic 40.0%
AGATGCAAAATTGCGATGGA+AGG + chr3_2:34686275-34686294 None:intergenic 40.0%
TACGAGATGCAAAATTGCGA+TGG + chr3_2:34686279-34686298 None:intergenic 40.0%
TGATGAGCACAAACAAAGCT+TGG + chr3_2:34686364-34686383 None:intergenic 40.0%
TGTGCGAACAATTCCTATGT+TGG - chr3_2:34686626-34686645 Msa0404030:three_prime_UTR 40.0%
GTGCGAACAATTCCTATGTT+GGG - chr3_2:34686627-34686646 Msa0404030:three_prime_UTR 40.0%
!! AATTGGTCCTCTGGATTAGT+GGG - chr3_2:34686680-34686699 Msa0404030:CDS 40.0%
TCAAGACTAAAAGTAGCTGC+TGG - chr3_2:34686758-34686777 Msa0404030:CDS 40.0%
TAGTGGGATAGTTGAATTGC+AGG - chr3_2:34686847-34686866 Msa0404030:intron 40.0%
GATAGTTGAATTGCAGGAGA+AGG - chr3_2:34686853-34686872 Msa0404030:intron 40.0%
! TGAATTGCAGGAGAAGGTTT+TGG - chr3_2:34686859-34686878 Msa0404030:intron 40.0%
ATTATCCCATGACATGGACA+TGG + chr3_2:34687077-34687096 None:intergenic 40.0%
ATGTCCATGTCATGGGATAA+TGG - chr3_2:34687076-34687095 Msa0404030:intron 40.0%
GGAACATTGAAATGGGACTT+AGG - chr3_2:34687142-34687161 Msa0404030:intron 40.0%
AAATGGGACTTAGGGGAATA+GGG - chr3_2:34687151-34687170 Msa0404030:intron 40.0%
CAATACCTCTTAGTGGCTTA+AGG + chr3_2:34687428-34687447 None:intergenic 40.0%
TTATCTGTTGCCCTGTCAAT+TGG - chr3_2:34687455-34687474 Msa0404030:intron 40.0%
GTAAGGAAATGCCAATTGAC+AGG + chr3_2:34687469-34687488 None:intergenic 40.0%
CATTATGGAGTGCGAAAGTA+AGG + chr3_2:34687486-34687505 None:intergenic 40.0%
CTTACTTTCGCACTCCATAA+TGG - chr3_2:34687484-34687503 Msa0404030:intron 40.0%
CTGATAACTTTCAGCACCAA+AGG + chr3_2:34687558-34687577 None:intergenic 40.0%
!! CTTTGGTGCTGAAAGTTATC+AGG - chr3_2:34687556-34687575 Msa0404030:intron 40.0%
GTGCTTAATGCAGATTATCG+AGG - chr3_2:34687613-34687632 Msa0404030:intron 40.0%
!!! AGTTTGATCTGGTTTTCCTG+TGG - chr3_2:34687797-34687816 Msa0404030:intron 40.0%
TTCTCTTCACAGCTTTCTGT+TGG + chr3_2:34687846-34687865 None:intergenic 40.0%
ACAGAAAGCTGTGAAGAGAA+AGG - chr3_2:34687846-34687865 Msa0404030:intron 40.0%
CGAGCCATTGTACAAAACTA+AGG + chr3_2:34688009-34688028 None:intergenic 40.0%
GTGTGCAAGCACTATACATT+TGG - chr3_2:34688310-34688329 Msa0404030:intron 40.0%
CCTGGAGAAGGGAAAGAAAA+TGG + chr3_2:34686229-34686248 None:intergenic 45.0%
! CCATTTTCTTTCCCTTCTCC+AGG - chr3_2:34686226-34686245 Msa0404030:three_prime_UTR 45.0%
GTTTCAGATGATCCTGGAGA+AGG + chr3_2:34686241-34686260 None:intergenic 45.0%
! TGTATGGACTGACCCAACAT+AGG + chr3_2:34686642-34686661 None:intergenic 45.0%
AGACAGAGCAACGTCTTGTA+TGG + chr3_2:34686658-34686677 None:intergenic 45.0%
GACGTTGCTCTGTCTTCAAT+TGG - chr3_2:34686663-34686682 Msa0404030:exon 45.0%
TCTGTCTTCAATTGGTCCTC+TGG - chr3_2:34686671-34686690 Msa0404030:exon 45.0%
! CAATTGGTCCTCTGGATTAG+TGG - chr3_2:34686679-34686698 Msa0404030:exon 45.0%
AAACTCACTTCAGCGCACAT+AGG + chr3_2:34686939-34686958 None:intergenic 45.0%
GAAATGGGACTTAGGGGAAT+AGG - chr3_2:34687150-34687169 Msa0404030:intron 45.0%
ACCAAGCTGTTTACCCAAAC+AGG - chr3_2:34687401-34687420 Msa0404030:intron 45.0%
CCAAGCTGTTTACCCAAACA+GGG - chr3_2:34687402-34687421 Msa0404030:intron 45.0%
!! CCACTAAGAGGTATTGCCAA+GGG - chr3_2:34687432-34687451 Msa0404030:intron 45.0%
!! GGAGTTTCAGAAGTGTCATG+TGG - chr3_2:34687634-34687653 Msa0404030:intron 45.0%
!! ACACATGGGTTAGCCTTGTA+TGG + chr3_2:34688344-34688363 None:intergenic 45.0%
! GATACCACCCCTGATAATGA+AGG - chr3_2:34688402-34688421 Msa0404030:five_prime_UTR 45.0%
TGTTCCTTCATTATCAGGGG+TGG + chr3_2:34688409-34688428 None:intergenic 45.0%
CCTGGAGAAGGGAAAGAAAA+TGG + chr3_2:34686229-34686248 None:intergenic 45.0%
! CCATTTTCTTTCCCTTCTCC+AGG - chr3_2:34686226-34686245 Msa0404030:three_prime_UTR 45.0%
GTTTCAGATGATCCTGGAGA+AGG + chr3_2:34686241-34686260 None:intergenic 45.0%
! TGTATGGACTGACCCAACAT+AGG + chr3_2:34686642-34686661 None:intergenic 45.0%
AGACAGAGCAACGTCTTGTA+TGG + chr3_2:34686658-34686677 None:intergenic 45.0%
GACGTTGCTCTGTCTTCAAT+TGG - chr3_2:34686663-34686682 Msa0404030:exon 45.0%
TCTGTCTTCAATTGGTCCTC+TGG - chr3_2:34686671-34686690 Msa0404030:exon 45.0%
! CAATTGGTCCTCTGGATTAG+TGG - chr3_2:34686679-34686698 Msa0404030:exon 45.0%
AAACTCACTTCAGCGCACAT+AGG + chr3_2:34686939-34686958 None:intergenic 45.0%
GAAATGGGACTTAGGGGAAT+AGG - chr3_2:34687150-34687169 Msa0404030:intron 45.0%
ACCAAGCTGTTTACCCAAAC+AGG - chr3_2:34687401-34687420 Msa0404030:intron 45.0%
CCAAGCTGTTTACCCAAACA+GGG - chr3_2:34687402-34687421 Msa0404030:intron 45.0%
!! CCACTAAGAGGTATTGCCAA+GGG - chr3_2:34687432-34687451 Msa0404030:intron 45.0%
!! GGAGTTTCAGAAGTGTCATG+TGG - chr3_2:34687634-34687653 Msa0404030:intron 45.0%
!! ACACATGGGTTAGCCTTGTA+TGG + chr3_2:34688344-34688363 None:intergenic 45.0%
! GATACCACCCCTGATAATGA+AGG - chr3_2:34688402-34688421 Msa0404030:five_prime_UTR 45.0%
TGTTCCTTCATTATCAGGGG+TGG + chr3_2:34688409-34688428 None:intergenic 45.0%
!!! AAATTTTTATTATTATTAGA+GGG + chr3_2:34688253-34688272 None:intergenic 5.0%
!!! TAAATTTTTATTATTATTAG+AGG + chr3_2:34688254-34688273 None:intergenic 5.0%
!!! AAATTTTTATTATTATTAGA+GGG + chr3_2:34688253-34688272 None:intergenic 5.0%
!!! TAAATTTTTATTATTATTAG+AGG + chr3_2:34688254-34688273 None:intergenic 5.0%
! GGATTAGTGGGTCCTTGGAT+TGG - chr3_2:34686692-34686711 Msa0404030:CDS 50.0%
! TGGGTCCTTGGATTGGATAC+CGG - chr3_2:34686699-34686718 Msa0404030:CDS 50.0%
GAAACCCGGTATCCAATCCA+AGG + chr3_2:34686707-34686726 None:intergenic 50.0%
CCCTGTTTGGGTAAACAGCT+TGG + chr3_2:34687405-34687424 None:intergenic 50.0%
AGTGGCTTAAGGCCCTGTTT+GGG + chr3_2:34687417-34687436 None:intergenic 50.0%
TAGTGGCTTAAGGCCCTGTT+TGG + chr3_2:34687418-34687437 None:intergenic 50.0%
!! GCCACTAAGAGGTATTGCCA+AGG - chr3_2:34687431-34687450 Msa0404030:intron 50.0%
CCCTTGGCAATACCTCTTAG+TGG + chr3_2:34687435-34687454 None:intergenic 50.0%
ACAGGGCAACAGATAACCCT+TGG + chr3_2:34687451-34687470 None:intergenic 50.0%
! GGATTAGTGGGTCCTTGGAT+TGG - chr3_2:34686692-34686711 Msa0404030:CDS 50.0%
! TGGGTCCTTGGATTGGATAC+CGG - chr3_2:34686699-34686718 Msa0404030:CDS 50.0%
GAAACCCGGTATCCAATCCA+AGG + chr3_2:34686707-34686726 None:intergenic 50.0%
CCCTGTTTGGGTAAACAGCT+TGG + chr3_2:34687405-34687424 None:intergenic 50.0%
AGTGGCTTAAGGCCCTGTTT+GGG + chr3_2:34687417-34687436 None:intergenic 50.0%
TAGTGGCTTAAGGCCCTGTT+TGG + chr3_2:34687418-34687437 None:intergenic 50.0%
!! GCCACTAAGAGGTATTGCCA+AGG - chr3_2:34687431-34687450 Msa0404030:intron 50.0%
CCCTTGGCAATACCTCTTAG+TGG + chr3_2:34687435-34687454 None:intergenic 50.0%
ACAGGGCAACAGATAACCCT+TGG + chr3_2:34687451-34687470 None:intergenic 50.0%
CCAAGGACCCACTAATCCAG+AGG + chr3_2:34686690-34686709 None:intergenic 55.0%
!! CCTCTGGATTAGTGGGTCCT+TGG - chr3_2:34686687-34686706 Msa0404030:CDS 55.0%
! GGGTCCTTGGATTGGATACC+GGG - chr3_2:34686700-34686719 Msa0404030:CDS 55.0%
CAGGGCCTTAAGCCACTAAG+AGG - chr3_2:34687420-34687439 Msa0404030:intron 55.0%
CCAAGGACCCACTAATCCAG+AGG + chr3_2:34686690-34686709 None:intergenic 55.0%
!! CCTCTGGATTAGTGGGTCCT+TGG - chr3_2:34686687-34686706 Msa0404030:CDS 55.0%
! GGGTCCTTGGATTGGATACC+GGG - chr3_2:34686700-34686719 Msa0404030:CDS 55.0%
CAGGGCCTTAAGCCACTAAG+AGG - chr3_2:34687420-34687439 Msa0404030:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 34686191 34688437 34686191 ID=Msa0404030;Name=Msa0404030
chr3_2 mRNA 34686191 34688437 34686191 ID=Msa0404030-mRNA-1;Parent=Msa0404030;Name=Msa0404030-mRNA-1;_AED=0.01;_eAED=0.01;_QI=153|1|1|1|0.66|0.5|4|489|82
chr3_2 exon 34686191 34686778 34686191 ID=Msa0404030-mRNA-1:exon:7088;Parent=Msa0404030-mRNA-1
chr3_2 exon 34686898 34687002 34686898 ID=Msa0404030-mRNA-1:exon:7087;Parent=Msa0404030-mRNA-1
chr3_2 exon 34687678 34687770 34687678 ID=Msa0404030-mRNA-1:exon:7086;Parent=Msa0404030-mRNA-1
chr3_2 exon 34688333 34688437 34688333 ID=Msa0404030-mRNA-1:exon:7085;Parent=Msa0404030-mRNA-1
chr3_2 five_prime_UTR 34688333 34688437 34688333 ID=Msa0404030-mRNA-1:five_prime_utr;Parent=Msa0404030-mRNA-1
chr3_2 five_prime_UTR 34687723 34687770 34687723 ID=Msa0404030-mRNA-1:five_prime_utr;Parent=Msa0404030-mRNA-1
chr3_2 CDS 34687678 34687722 34687678 ID=Msa0404030-mRNA-1:cds;Parent=Msa0404030-mRNA-1
chr3_2 CDS 34686898 34687002 34686898 ID=Msa0404030-mRNA-1:cds;Parent=Msa0404030-mRNA-1
chr3_2 CDS 34686680 34686778 34686680 ID=Msa0404030-mRNA-1:cds;Parent=Msa0404030-mRNA-1
chr3_2 three_prime_UTR 34686191 34686679 34686191 ID=Msa0404030-mRNA-1:three_prime_utr;Parent=Msa0404030-mRNA-1
Gene Sequence

>Msa0404030

ATGCATCCTCCTTTAACATTGCACAAACATCCTATGTGCGCTGAAATTATCGAGGAGTTTCAGAAGTGTCATGTGGAACATCCTATTGCAAAATTCTTTGGCGAATGTACAGAATTGAAAATAAAATTGGATCGCTGCTTCAGAGCAGAAAAAGCTGTGAAGAGAAAGGCCAACTTTGAAAAGAGCAAAGAACTCAAGGAACAATTGCGAGTTTTAAGGAAAGAAAATGCTGCAAGCAGCAGTCAATAG

Protein sequence

>Msa0404030

MHPPLTLHKHPMCAEIIEEFQKCHVEHPIAKFFGECTELKIKLDRCFRAEKAVKRKANFEKSKELKEQLRVLRKENAASSSQ*