AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0620050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620050 MtrunA17_Chr8g0385601 91.892 222 16 1 1 220 1 222 8.45e-153 422
Msa0620050 MtrunA17_Chr8g0385631 82.192 219 39 0 1 219 1 219 3.49e-128 360
Msa0620050 MtrunA17_Chr3g0131541 66.842 190 56 3 1 187 1 186 1.96e-90 265
Msa0620050 MtrunA17_Chr3g0131551 61.579 190 70 2 1 187 7 196 5.14e-83 246
Msa0620050 MtrunA17_Chr8g0385611 71.975 157 44 0 1 157 1 157 1.88e-76 227
Msa0620050 MtrunA17_Chr8g0385621 74.545 55 13 1 158 211 1 55 4.51e-21 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620050 AT3G23760.1 62.162 185 67 2 9 191 11 194 1.45e-83 247
Msa0620050 AT4G14100.1 55.556 198 87 1 9 206 8 204 1.10e-80 240

Find 81 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCTTCTCTTGTGTATT+TGG 0.089272 4_2:+71343578 None:intergenic
GCTTGATGGTGCTAATTATT+TGG 0.169784 4_2:-71343919 Msa0620050:CDS
TATAATAATAATCTTTGTTT+TGG 0.190983 4_2:-71343438 Msa0620050:three_prime_UTR
GCTCCTTCTCTTGTGTATTT+GGG 0.191163 4_2:+71343579 None:intergenic
TCCGGCCACGGCGCCGGAAT+TGG 0.215529 4_2:+71344170 None:intergenic
GGCCATTGCTTTGCTGATTT+CGG 0.266745 4_2:+71344271 None:intergenic
GGGAGAAAGTCGAATTTATT+TGG 0.267906 4_2:-71343860 Msa0620050:CDS
CCACGACCCAATTGGCTTGA+TGG 0.304709 4_2:-71343933 Msa0620050:CDS
CTTGATGGTGCTAATTATTT+GGG 0.312059 4_2:-71343918 Msa0620050:CDS
TGTTTCTCAACCTTTAGTTT+TGG 0.347136 4_2:+71344364 None:intergenic
CCGGCCACGGCGCCGGAATT+GGG 0.367218 4_2:+71344171 None:intergenic
ATTTGAGGTTGGAGCAGTTC+TGG 0.367268 4_2:-71343656 Msa0620050:CDS
TGAGAACATCAAGCTGGTAT+TGG 0.386461 4_2:+71344051 None:intergenic
AAATACTATCCTTAACTTGA+TGG 0.392076 4_2:-71344412 Msa0620050:five_prime_UTR
AGGACTGAGTGGAACTGTTC+CGG 0.404511 4_2:+71344152 None:intergenic
ATTAGCACCATCAAGCCAAT+TGG 0.405118 4_2:+71343926 None:intergenic
GACCACAGAGGACCCAATTC+CGG 0.405830 4_2:-71344183 Msa0620050:CDS
CGTTACTTCCCATCAAGTTA+AGG 0.406563 4_2:+71344403 None:intergenic
TATAAATCATATGATATTGT+TGG 0.417733 4_2:+71343479 None:intergenic
AAGCTTTGCTTGGGCATCAA+TGG 0.423625 4_2:-71343390 Msa0620050:three_prime_UTR
TTCTCAAATATGACCTTGAA+TGG 0.424620 4_2:-71344034 Msa0620050:CDS
GGTTTATAATAAGCTTTGCT+TGG 0.428823 4_2:-71343400 Msa0620050:three_prime_UTR
AATGTTGAAATTTCGTCCAT+TGG 0.430457 4_2:+71344076 None:intergenic
CAGTATGAACGACGTGGATA+AGG 0.432799 4_2:+71344317 None:intergenic
ATGTTGAAATTTCGTCCATT+GGG 0.444878 4_2:+71344077 None:intergenic
CTCTTCGAAAACAAGACTTA+TGG 0.444999 4_2:-71344109 Msa0620050:CDS
ATTCACCCAGCCAAAACTAA+AGG 0.447343 4_2:-71344374 Msa0620050:five_prime_UTR
AACTGTTCCGGCCACGGCGC+CGG 0.448851 4_2:+71344164 None:intergenic
TGGTGCCATTGTTCCATTCA+AGG 0.450465 4_2:+71344021 None:intergenic
ATAAATCATATGATATTGTT+GGG 0.451260 4_2:+71343480 None:intergenic
CCCAATTCCGGCGCCGTGGC+CGG 0.459468 4_2:-71344171 Msa0620050:CDS
TTGGTATTCCACGACCCAAT+TGG 0.459870 4_2:-71343941 Msa0620050:CDS
CTCCTTCTCTTGTGTATTTG+GGG 0.462628 4_2:+71343580 None:intergenic
GTTTATAATAAGCTTTGCTT+GGG 0.470461 4_2:-71343399 Msa0620050:three_prime_UTR
AACATTACACAGAAAATTGT+CGG 0.472163 4_2:+71343884 None:intergenic
TCTGGATGATGCCCATTGGC+AGG 0.480962 4_2:-71343638 Msa0620050:CDS
ACTAATGAGTGAGATGAGAT+AGG 0.485469 4_2:-71343506 Msa0620050:exon
CTTATTTATAGTAACAAAGA+TGG 0.497250 4_2:+71343329 None:intergenic
TAAGGATAGTATTTATCTAT+CGG 0.497379 4_2:+71344421 None:intergenic
AATACTATCCTTAACTTGAT+GGG 0.507432 4_2:-71344411 Msa0620050:five_prime_UTR
AGCCGCTTCTGTTGAGGAGT+AGG 0.512649 4_2:+71344132 None:intergenic
ACTTTGCAAGTGTGCTCGAA+AGG 0.514114 4_2:+71343978 None:intergenic
TTAGCACCATCAAGCCAATT+GGG 0.517591 4_2:+71343927 None:intergenic
AACAAGACTTATGGTACGAT+TGG 0.522229 4_2:-71344100 Msa0620050:CDS
GAGTGGAACTGTTCCGGCCA+CGG 0.525676 4_2:+71344158 None:intergenic
TGGTCGAAGTTGAGAGATGA+AGG 0.525737 4_2:+71344201 None:intergenic
ATTGCTTTGCTGATTTCGGA+AGG 0.543100 4_2:+71344275 None:intergenic
GAAGAGAGCCGCTTCTGTTG+AGG 0.544198 4_2:+71344126 None:intergenic
TACTGATGTGATGACATTTG+AGG 0.549841 4_2:-71343671 Msa0620050:CDS
AATGCATTCTTCTGTGGCAG+AGG 0.552048 4_2:+71344250 None:intergenic
AATAGACAGGAGCCTGCCAA+TGG 0.552630 4_2:+71343626 None:intergenic
TTATGGTACGATTGGCCCAA+TGG 0.556501 4_2:-71344092 Msa0620050:CDS
CTTTGCAAGTGTGCTCGAAA+GGG 0.564893 4_2:+71343979 None:intergenic
AAGTTGAGAGATGAAGGAAG+AGG 0.569210 4_2:+71344207 None:intergenic
CCATCAAGCCAATTGGGTCG+TGG 0.576651 4_2:+71343933 None:intergenic
ATAGACAGGAGCCTGCCAAT+GGG 0.577912 4_2:+71343627 None:intergenic
GTCCTACTCCTCAACAGAAG+CGG 0.579821 4_2:-71344134 Msa0620050:CDS
AACCCCAAATACACAAGAGA+AGG 0.582352 4_2:-71343582 Msa0620050:CDS
TCGTAGAAGATCCACTTGAC+AGG 0.590706 4_2:+71343810 None:intergenic
TCACTAAAAGACCTGTCAAG+TGG 0.590795 4_2:-71343821 Msa0620050:CDS
TATGACCTTGAATGGAACAA+TGG 0.591932 4_2:-71344026 Msa0620050:CDS
TTCCGAAATCAGCAAAGCAA+TGG 0.592636 4_2:-71344273 Msa0620050:exon
CAGTTCTGGATGATGCCCAT+TGG 0.593169 4_2:-71343642 Msa0620050:CDS
CTTAACTTGATGGGAAGTAA+CGG 0.594348 4_2:-71344402 Msa0620050:five_prime_UTR
GCCTTACTAAAACAATAGAC+AGG 0.594404 4_2:+71343613 None:intergenic
AATATCGTGGATCTTCACTT+AGG 0.595676 4_2:+71344456 None:intergenic
CATATTTGAGAACATCAAGC+TGG 0.600302 4_2:+71344045 None:intergenic
AGGGTCGAGAGTGTAGAGAA+AGG 0.604953 4_2:+71343998 None:intergenic
CAAACAAATGCATTCTTCTG+TGG 0.604964 4_2:+71344244 None:intergenic
CGCCGGAATTGGGTCCTCTG+TGG 0.626171 4_2:+71344181 None:intergenic
GATGTGATGACATTTGAGGT+TGG 0.629445 4_2:-71343667 Msa0620050:CDS
GTCAAGTGGATCTTCTACGA+TGG 0.629602 4_2:-71343807 Msa0620050:intron
AGGACCCAATTCCGGCGCCG+TGG 0.635409 4_2:-71344175 Msa0620050:CDS
AATCATATGATATTGTTGGG+TGG 0.638483 4_2:+71343483 None:intergenic
GCAGCTTCTTACAAATATCG+TGG 0.645047 4_2:+71344443 None:intergenic
AAAGTGACTCAATATGATGT+TGG 0.647948 4_2:-71343960 Msa0620050:CDS
TGTTGAGGAGTAGGACTGAG+TGG 0.648618 4_2:+71344141 None:intergenic
GTCGAGAGTGTAGAGAAAGG+TGG 0.677328 4_2:+71344001 None:intergenic
CAGTATCAGTATGAACGACG+TGG 0.680246 4_2:+71344311 None:intergenic
TCTCTCAACTTCGACCACAG+AGG 0.720290 4_2:-71344195 Msa0620050:CDS
CTTATTATAAACCAGCACCG+AGG 0.764812 4_2:+71343410 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATAATAATCTTTGTTT+TGG - chr4_2:71344373-71344392 Msa0620050:five_prime_UTR 10.0%
!!! ATAATAATAATCTTTGTTTT+GGG - chr4_2:71344374-71344393 Msa0620050:five_prime_UTR 10.0%
!!! TATAATAATAATCTTTGTTT+TGG - chr4_2:71344373-71344392 Msa0620050:five_prime_UTR 10.0%
!!! ATAATAATAATCTTTGTTTT+GGG - chr4_2:71344374-71344393 Msa0620050:five_prime_UTR 10.0%
!! TAAATTCATTATATGATGAT+TGG - chr4_2:71344101-71344120 Msa0620050:CDS 15.0%
!! ATAAATCATATGATATTGTT+GGG + chr4_2:71344334-71344353 None:intergenic 15.0%
!! TATAAATCATATGATATTGT+TGG + chr4_2:71344335-71344354 None:intergenic 15.0%
!!! TAATAATAATCTTTGTTTTG+GGG - chr4_2:71344375-71344394 Msa0620050:five_prime_UTR 15.0%
!! TAAATTCATTATATGATGAT+TGG - chr4_2:71344101-71344120 Msa0620050:CDS 15.0%
!! ATAAATCATATGATATTGTT+GGG + chr4_2:71344334-71344353 None:intergenic 15.0%
!! TATAAATCATATGATATTGT+TGG + chr4_2:71344335-71344354 None:intergenic 15.0%
!!! TAATAATAATCTTTGTTTTG+GGG - chr4_2:71344375-71344394 Msa0620050:five_prime_UTR 15.0%
!! TAAGGATAGTATTTATCTAT+CGG + chr4_2:71343393-71343412 None:intergenic 20.0%
!! TAAGGATAGTATTTATCTAT+CGG + chr4_2:71343393-71343412 None:intergenic 20.0%
!! AAATACTATCCTTAACTTGA+TGG - chr4_2:71343399-71343418 Msa0620050:three_prime_UTR 25.0%
!! AATACTATCCTTAACTTGAT+GGG - chr4_2:71343400-71343419 Msa0620050:three_prime_UTR 25.0%
! AACATTACACAGAAAATTGT+CGG + chr4_2:71343930-71343949 None:intergenic 25.0%
!! ACAATTTTCTGTGTAATGTT+TGG - chr4_2:71343930-71343949 Msa0620050:CDS 25.0%
!! CAATTTTCTGTGTAATGTTT+GGG - chr4_2:71343931-71343950 Msa0620050:CDS 25.0%
! CTACATATAGCTAAAATTAC+TGG - chr4_2:71344055-71344074 Msa0620050:CDS 25.0%
! GTTTATAATAAGCTTTGCTT+GGG - chr4_2:71344412-71344431 Msa0620050:five_prime_UTR 25.0%
!! AAATACTATCCTTAACTTGA+TGG - chr4_2:71343399-71343418 Msa0620050:three_prime_UTR 25.0%
!! AATACTATCCTTAACTTGAT+GGG - chr4_2:71343400-71343419 Msa0620050:three_prime_UTR 25.0%
! AACATTACACAGAAAATTGT+CGG + chr4_2:71343930-71343949 None:intergenic 25.0%
!! ACAATTTTCTGTGTAATGTT+TGG - chr4_2:71343930-71343949 Msa0620050:CDS 25.0%
!! CAATTTTCTGTGTAATGTTT+GGG - chr4_2:71343931-71343950 Msa0620050:CDS 25.0%
! CTACATATAGCTAAAATTAC+TGG - chr4_2:71344055-71344074 Msa0620050:CDS 25.0%
! GTTTATAATAAGCTTTGCTT+GGG - chr4_2:71344412-71344431 Msa0620050:five_prime_UTR 25.0%
!! TGTTTCTCAACCTTTAGTTT+TGG + chr4_2:71343450-71343469 None:intergenic 30.0%
ATGTTGAAATTTCGTCCATT+GGG + chr4_2:71343737-71343756 None:intergenic 30.0%
AATGTTGAAATTTCGTCCAT+TGG + chr4_2:71343738-71343757 None:intergenic 30.0%
TTCTCAAATATGACCTTGAA+TGG - chr4_2:71343777-71343796 Msa0620050:intron 30.0%
AAAGTGACTCAATATGATGT+TGG - chr4_2:71343851-71343870 Msa0620050:CDS 30.0%
!! CTTGATGGTGCTAATTATTT+GGG - chr4_2:71343893-71343912 Msa0620050:CDS 30.0%
!!! TCCTGTCTATTGTTTTAGTA+AGG - chr4_2:71344197-71344216 Msa0620050:CDS 30.0%
!!! CTATTGTTGATGATTTTCGT+TGG - chr4_2:71344280-71344299 Msa0620050:five_prime_UTR 30.0%
AATCATATGATATTGTTGGG+TGG + chr4_2:71344331-71344350 None:intergenic 30.0%
!!! TAATAATCTTTGTTTTGGGG+AGG - chr4_2:71344378-71344397 Msa0620050:five_prime_UTR 30.0%
GGTTTATAATAAGCTTTGCT+TGG - chr4_2:71344411-71344430 Msa0620050:five_prime_UTR 30.0%
!! TGTTTCTCAACCTTTAGTTT+TGG + chr4_2:71343450-71343469 None:intergenic 30.0%
ATGTTGAAATTTCGTCCATT+GGG + chr4_2:71343737-71343756 None:intergenic 30.0%
AATGTTGAAATTTCGTCCAT+TGG + chr4_2:71343738-71343757 None:intergenic 30.0%
TTCTCAAATATGACCTTGAA+TGG - chr4_2:71343777-71343796 Msa0620050:intron 30.0%
AAAGTGACTCAATATGATGT+TGG - chr4_2:71343851-71343870 Msa0620050:CDS 30.0%
!! CTTGATGGTGCTAATTATTT+GGG - chr4_2:71343893-71343912 Msa0620050:CDS 30.0%
!!! TCCTGTCTATTGTTTTAGTA+AGG - chr4_2:71344197-71344216 Msa0620050:CDS 30.0%
!!! CTATTGTTGATGATTTTCGT+TGG - chr4_2:71344280-71344299 Msa0620050:five_prime_UTR 30.0%
AATCATATGATATTGTTGGG+TGG + chr4_2:71344331-71344350 None:intergenic 30.0%
!!! TAATAATCTTTGTTTTGGGG+AGG - chr4_2:71344378-71344397 Msa0620050:five_prime_UTR 30.0%
GGTTTATAATAAGCTTTGCT+TGG - chr4_2:71344411-71344430 Msa0620050:five_prime_UTR 30.0%
AATATCGTGGATCTTCACTT+AGG + chr4_2:71343358-71343377 None:intergenic 35.0%
! CTTAACTTGATGGGAAGTAA+CGG - chr4_2:71343409-71343428 Msa0620050:three_prime_UTR 35.0%
CAAACAAATGCATTCTTCTG+TGG + chr4_2:71343570-71343589 None:intergenic 35.0%
CTCTTCGAAAACAAGACTTA+TGG - chr4_2:71343702-71343721 Msa0620050:intron 35.0%
AACAAGACTTATGGTACGAT+TGG - chr4_2:71343711-71343730 Msa0620050:intron 35.0%
CATATTTGAGAACATCAAGC+TGG + chr4_2:71343769-71343788 None:intergenic 35.0%
TATGACCTTGAATGGAACAA+TGG - chr4_2:71343785-71343804 Msa0620050:intron 35.0%
!! GCTTGATGGTGCTAATTATT+TGG - chr4_2:71343892-71343911 Msa0620050:CDS 35.0%
GGGAGAAAGTCGAATTTATT+TGG - chr4_2:71343951-71343970 Msa0620050:CDS 35.0%
TACTGATGTGATGACATTTG+AGG - chr4_2:71344140-71344159 Msa0620050:CDS 35.0%
GCCTTACTAAAACAATAGAC+AGG + chr4_2:71344201-71344220 None:intergenic 35.0%
!!! CTATTGTTTTAGTAAGGCTG+AGG - chr4_2:71344203-71344222 Msa0620050:CDS 35.0%
ACTAATGAGTGAGATGAGAT+AGG - chr4_2:71344305-71344324 Msa0620050:five_prime_UTR 35.0%
AATATCGTGGATCTTCACTT+AGG + chr4_2:71343358-71343377 None:intergenic 35.0%
! CTTAACTTGATGGGAAGTAA+CGG - chr4_2:71343409-71343428 Msa0620050:three_prime_UTR 35.0%
CAAACAAATGCATTCTTCTG+TGG + chr4_2:71343570-71343589 None:intergenic 35.0%
CTCTTCGAAAACAAGACTTA+TGG - chr4_2:71343702-71343721 Msa0620050:intron 35.0%
AACAAGACTTATGGTACGAT+TGG - chr4_2:71343711-71343730 Msa0620050:intron 35.0%
CATATTTGAGAACATCAAGC+TGG + chr4_2:71343769-71343788 None:intergenic 35.0%
TATGACCTTGAATGGAACAA+TGG - chr4_2:71343785-71343804 Msa0620050:intron 35.0%
!! GCTTGATGGTGCTAATTATT+TGG - chr4_2:71343892-71343911 Msa0620050:CDS 35.0%
GGGAGAAAGTCGAATTTATT+TGG - chr4_2:71343951-71343970 Msa0620050:CDS 35.0%
TACTGATGTGATGACATTTG+AGG - chr4_2:71344140-71344159 Msa0620050:CDS 35.0%
GCCTTACTAAAACAATAGAC+AGG + chr4_2:71344201-71344220 None:intergenic 35.0%
!!! CTATTGTTTTAGTAAGGCTG+AGG - chr4_2:71344203-71344222 Msa0620050:CDS 35.0%
ACTAATGAGTGAGATGAGAT+AGG - chr4_2:71344305-71344324 Msa0620050:five_prime_UTR 35.0%
GCAGCTTCTTACAAATATCG+TGG + chr4_2:71343371-71343390 None:intergenic 40.0%
CGTTACTTCCCATCAAGTTA+AGG + chr4_2:71343411-71343430 None:intergenic 40.0%
ATTCACCCAGCCAAAACTAA+AGG - chr4_2:71343437-71343456 Msa0620050:three_prime_UTR 40.0%
!!! CTCAACCTTTAGTTTTGGCT+GGG + chr4_2:71343445-71343464 None:intergenic 40.0%
!!! TCTCAACCTTTAGTTTTGGC+TGG + chr4_2:71343446-71343465 None:intergenic 40.0%
!! ATTGCTTTGCTGATTTCGGA+AGG + chr4_2:71343539-71343558 None:intergenic 40.0%
TTCCGAAATCAGCAAAGCAA+TGG - chr4_2:71343538-71343557 Msa0620050:CDS 40.0%
AAGTTGAGAGATGAAGGAAG+AGG + chr4_2:71343607-71343626 None:intergenic 40.0%
TGAGAACATCAAGCTGGTAT+TGG + chr4_2:71343763-71343782 None:intergenic 40.0%
TTAGCACCATCAAGCCAATT+GGG + chr4_2:71343887-71343906 None:intergenic 40.0%
ATTAGCACCATCAAGCCAAT+TGG + chr4_2:71343888-71343907 None:intergenic 40.0%
TCACTAAAAGACCTGTCAAG+TGG - chr4_2:71343990-71344009 Msa0620050:CDS 40.0%
ATATGATGATTGGTGAGTGC+AGG - chr4_2:71344111-71344130 Msa0620050:CDS 40.0%
! GATGTGATGACATTTGAGGT+TGG - chr4_2:71344144-71344163 Msa0620050:CDS 40.0%
AACCCCAAATACACAAGAGA+AGG - chr4_2:71344229-71344248 Msa0620050:CDS 40.0%
CTCCTTCTCTTGTGTATTTG+GGG + chr4_2:71344234-71344253 None:intergenic 40.0%
GCTCCTTCTCTTGTGTATTT+GGG + chr4_2:71344235-71344254 None:intergenic 40.0%
TGCTCCTTCTCTTGTGTATT+TGG + chr4_2:71344236-71344255 None:intergenic 40.0%
CTTATTATAAACCAGCACCG+AGG + chr4_2:71344404-71344423 None:intergenic 40.0%
GCAGCTTCTTACAAATATCG+TGG + chr4_2:71343371-71343390 None:intergenic 40.0%
CGTTACTTCCCATCAAGTTA+AGG + chr4_2:71343411-71343430 None:intergenic 40.0%
ATTCACCCAGCCAAAACTAA+AGG - chr4_2:71343437-71343456 Msa0620050:three_prime_UTR 40.0%
!!! CTCAACCTTTAGTTTTGGCT+GGG + chr4_2:71343445-71343464 None:intergenic 40.0%
!!! TCTCAACCTTTAGTTTTGGC+TGG + chr4_2:71343446-71343465 None:intergenic 40.0%
!! ATTGCTTTGCTGATTTCGGA+AGG + chr4_2:71343539-71343558 None:intergenic 40.0%
TTCCGAAATCAGCAAAGCAA+TGG - chr4_2:71343538-71343557 Msa0620050:CDS 40.0%
AAGTTGAGAGATGAAGGAAG+AGG + chr4_2:71343607-71343626 None:intergenic 40.0%
TGAGAACATCAAGCTGGTAT+TGG + chr4_2:71343763-71343782 None:intergenic 40.0%
TTAGCACCATCAAGCCAATT+GGG + chr4_2:71343887-71343906 None:intergenic 40.0%
ATTAGCACCATCAAGCCAAT+TGG + chr4_2:71343888-71343907 None:intergenic 40.0%
TCACTAAAAGACCTGTCAAG+TGG - chr4_2:71343990-71344009 Msa0620050:CDS 40.0%
ATATGATGATTGGTGAGTGC+AGG - chr4_2:71344111-71344130 Msa0620050:CDS 40.0%
! GATGTGATGACATTTGAGGT+TGG - chr4_2:71344144-71344163 Msa0620050:CDS 40.0%
AACCCCAAATACACAAGAGA+AGG - chr4_2:71344229-71344248 Msa0620050:CDS 40.0%
CTCCTTCTCTTGTGTATTTG+GGG + chr4_2:71344234-71344253 None:intergenic 40.0%
GCTCCTTCTCTTGTGTATTT+GGG + chr4_2:71344235-71344254 None:intergenic 40.0%
TGCTCCTTCTCTTGTGTATT+TGG + chr4_2:71344236-71344255 None:intergenic 40.0%
CTTATTATAAACCAGCACCG+AGG + chr4_2:71344404-71344423 None:intergenic 40.0%
CAGTATGAACGACGTGGATA+AGG + chr4_2:71343497-71343516 None:intergenic 45.0%
CAGTATCAGTATGAACGACG+TGG + chr4_2:71343503-71343522 None:intergenic 45.0%
!! GGCCATTGCTTTGCTGATTT+CGG + chr4_2:71343543-71343562 None:intergenic 45.0%
AATGCATTCTTCTGTGGCAG+AGG + chr4_2:71343564-71343583 None:intergenic 45.0%
TGGTCGAAGTTGAGAGATGA+AGG + chr4_2:71343613-71343632 None:intergenic 45.0%
! TTATGGTACGATTGGCCCAA+TGG - chr4_2:71343719-71343738 Msa0620050:intron 45.0%
!! TGGTGCCATTGTTCCATTCA+AGG + chr4_2:71343793-71343812 None:intergenic 45.0%
CTTTGCAAGTGTGCTCGAAA+GGG + chr4_2:71343835-71343854 None:intergenic 45.0%
ACTTTGCAAGTGTGCTCGAA+AGG + chr4_2:71343836-71343855 None:intergenic 45.0%
TTGGTATTCCACGACCCAAT+TGG - chr4_2:71343870-71343889 Msa0620050:CDS 45.0%
TCGTAGAAGATCCACTTGAC+AGG + chr4_2:71344004-71344023 None:intergenic 45.0%
GTCAAGTGGATCTTCTACGA+TGG - chr4_2:71344004-71344023 Msa0620050:CDS 45.0%
! ATTTGAGGTTGGAGCAGTTC+TGG - chr4_2:71344155-71344174 Msa0620050:CDS 45.0%
AAGCTTTGCTTGGGCATCAA+TGG - chr4_2:71344421-71344440 Msa0620050:five_prime_UTR 45.0%
CAGTATGAACGACGTGGATA+AGG + chr4_2:71343497-71343516 None:intergenic 45.0%
CAGTATCAGTATGAACGACG+TGG + chr4_2:71343503-71343522 None:intergenic 45.0%
!! GGCCATTGCTTTGCTGATTT+CGG + chr4_2:71343543-71343562 None:intergenic 45.0%
AATGCATTCTTCTGTGGCAG+AGG + chr4_2:71343564-71343583 None:intergenic 45.0%
TGGTCGAAGTTGAGAGATGA+AGG + chr4_2:71343613-71343632 None:intergenic 45.0%
! TTATGGTACGATTGGCCCAA+TGG - chr4_2:71343719-71343738 Msa0620050:intron 45.0%
!! TGGTGCCATTGTTCCATTCA+AGG + chr4_2:71343793-71343812 None:intergenic 45.0%
CTTTGCAAGTGTGCTCGAAA+GGG + chr4_2:71343835-71343854 None:intergenic 45.0%
ACTTTGCAAGTGTGCTCGAA+AGG + chr4_2:71343836-71343855 None:intergenic 45.0%
TTGGTATTCCACGACCCAAT+TGG - chr4_2:71343870-71343889 Msa0620050:CDS 45.0%
TCGTAGAAGATCCACTTGAC+AGG + chr4_2:71344004-71344023 None:intergenic 45.0%
GTCAAGTGGATCTTCTACGA+TGG - chr4_2:71344004-71344023 Msa0620050:CDS 45.0%
! ATTTGAGGTTGGAGCAGTTC+TGG - chr4_2:71344155-71344174 Msa0620050:CDS 45.0%
AAGCTTTGCTTGGGCATCAA+TGG - chr4_2:71344421-71344440 Msa0620050:five_prime_UTR 45.0%
TCTCTCAACTTCGACCACAG+AGG - chr4_2:71343616-71343635 Msa0620050:CDS 50.0%
AGGACTGAGTGGAACTGTTC+CGG + chr4_2:71343662-71343681 None:intergenic 50.0%
TGTTGAGGAGTAGGACTGAG+TGG + chr4_2:71343673-71343692 None:intergenic 50.0%
GTCCTACTCCTCAACAGAAG+CGG - chr4_2:71343677-71343696 Msa0620050:CDS 50.0%
! GTCGAGAGTGTAGAGAAAGG+TGG + chr4_2:71343813-71343832 None:intergenic 50.0%
! AGGGTCGAGAGTGTAGAGAA+AGG + chr4_2:71343816-71343835 None:intergenic 50.0%
!! CAGTTCTGGATGATGCCCAT+TGG - chr4_2:71344169-71344188 Msa0620050:CDS 50.0%
ATAGACAGGAGCCTGCCAAT+GGG + chr4_2:71344187-71344206 None:intergenic 50.0%
AATAGACAGGAGCCTGCCAA+TGG + chr4_2:71344188-71344207 None:intergenic 50.0%
!!! TCTTTGTTTTGGGGAGGCCT+CGG - chr4_2:71344384-71344403 Msa0620050:five_prime_UTR 50.0%
TCTCTCAACTTCGACCACAG+AGG - chr4_2:71343616-71343635 Msa0620050:CDS 50.0%
AGGACTGAGTGGAACTGTTC+CGG + chr4_2:71343662-71343681 None:intergenic 50.0%
TGTTGAGGAGTAGGACTGAG+TGG + chr4_2:71343673-71343692 None:intergenic 50.0%
GTCCTACTCCTCAACAGAAG+CGG - chr4_2:71343677-71343696 Msa0620050:CDS 50.0%
! GTCGAGAGTGTAGAGAAAGG+TGG + chr4_2:71343813-71343832 None:intergenic 50.0%
! AGGGTCGAGAGTGTAGAGAA+AGG + chr4_2:71343816-71343835 None:intergenic 50.0%
!! CAGTTCTGGATGATGCCCAT+TGG - chr4_2:71344169-71344188 Msa0620050:CDS 50.0%
ATAGACAGGAGCCTGCCAAT+GGG + chr4_2:71344187-71344206 None:intergenic 50.0%
AATAGACAGGAGCCTGCCAA+TGG + chr4_2:71344188-71344207 None:intergenic 50.0%
!!! TCTTTGTTTTGGGGAGGCCT+CGG - chr4_2:71344384-71344403 Msa0620050:five_prime_UTR 50.0%
GACCACAGAGGACCCAATTC+CGG - chr4_2:71343628-71343647 Msa0620050:CDS 55.0%
AGCCGCTTCTGTTGAGGAGT+AGG + chr4_2:71343682-71343701 None:intergenic 55.0%
GAAGAGAGCCGCTTCTGTTG+AGG + chr4_2:71343688-71343707 None:intergenic 55.0%
CCATCAAGCCAATTGGGTCG+TGG + chr4_2:71343881-71343900 None:intergenic 55.0%
!! CCACGACCCAATTGGCTTGA+TGG - chr4_2:71343878-71343897 Msa0620050:CDS 55.0%
TCTGGATGATGCCCATTGGC+AGG - chr4_2:71344173-71344192 Msa0620050:CDS 55.0%
GACCACAGAGGACCCAATTC+CGG - chr4_2:71343628-71343647 Msa0620050:CDS 55.0%
AGCCGCTTCTGTTGAGGAGT+AGG + chr4_2:71343682-71343701 None:intergenic 55.0%
GAAGAGAGCCGCTTCTGTTG+AGG + chr4_2:71343688-71343707 None:intergenic 55.0%
CCATCAAGCCAATTGGGTCG+TGG + chr4_2:71343881-71343900 None:intergenic 55.0%
!! CCACGACCCAATTGGCTTGA+TGG - chr4_2:71343878-71343897 Msa0620050:CDS 55.0%
TCTGGATGATGCCCATTGGC+AGG - chr4_2:71344173-71344192 Msa0620050:CDS 55.0%
GAGTGGAACTGTTCCGGCCA+CGG + chr4_2:71343656-71343675 None:intergenic 60.0%
GAGTGGAACTGTTCCGGCCA+CGG + chr4_2:71343656-71343675 None:intergenic 60.0%
CGCCGGAATTGGGTCCTCTG+TGG + chr4_2:71343633-71343652 None:intergenic 65.0%
!! TTTTGGGGAGGCCTCGGTGC+TGG - chr4_2:71344390-71344409 Msa0620050:five_prime_UTR 65.0%
CGCCGGAATTGGGTCCTCTG+TGG + chr4_2:71343633-71343652 None:intergenic 65.0%
!! TTTTGGGGAGGCCTCGGTGC+TGG - chr4_2:71344390-71344409 Msa0620050:five_prime_UTR 65.0%
AGGACCCAATTCCGGCGCCG+TGG - chr4_2:71343636-71343655 Msa0620050:CDS 70.0%
AACTGTTCCGGCCACGGCGC+CGG + chr4_2:71343650-71343669 None:intergenic 70.0%
AGGACCCAATTCCGGCGCCG+TGG - chr4_2:71343636-71343655 Msa0620050:CDS 70.0%
AACTGTTCCGGCCACGGCGC+CGG + chr4_2:71343650-71343669 None:intergenic 70.0%
! CCGGCCACGGCGCCGGAATT+GGG + chr4_2:71343643-71343662 None:intergenic 75.0%
CCCAATTCCGGCGCCGTGGC+CGG - chr4_2:71343640-71343659 Msa0620050:CDS 75.0%
! TCCGGCCACGGCGCCGGAAT+TGG + chr4_2:71343644-71343663 None:intergenic 75.0%
! CCGGCCACGGCGCCGGAATT+GGG + chr4_2:71343643-71343662 None:intergenic 75.0%
CCCAATTCCGGCGCCGTGGC+CGG - chr4_2:71343640-71343659 Msa0620050:CDS 75.0%
! TCCGGCCACGGCGCCGGAAT+TGG + chr4_2:71343644-71343663 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 71343332 71344501 71343332 ID=Msa0620050;Name=Msa0620050
chr4_2 mRNA 71343332 71344501 71343332 ID=Msa0620050-mRNA-1;Parent=Msa0620050;Name=Msa0620050-mRNA-1;_AED=0.35;_eAED=0.35;_QI=225|1|1|1|1|1|2|175|220
chr4_2 exon 71343332 71343700 71343332 ID=Msa0620050-mRNA-1:exon:21106;Parent=Msa0620050-mRNA-1
chr4_2 exon 71343808 71344501 71343808 ID=Msa0620050-mRNA-1:exon:21105;Parent=Msa0620050-mRNA-1
chr4_2 five_prime_UTR 71344277 71344501 71344277 ID=Msa0620050-mRNA-1:five_prime_utr;Parent=Msa0620050-mRNA-1
chr4_2 CDS 71343808 71344276 71343808 ID=Msa0620050-mRNA-1:cds;Parent=Msa0620050-mRNA-1
chr4_2 CDS 71343507 71343700 71343507 ID=Msa0620050-mRNA-1:cds;Parent=Msa0620050-mRNA-1
chr4_2 three_prime_UTR 71343332 71343506 71343332 ID=Msa0620050-mRNA-1:three_prime_utr;Parent=Msa0620050-mRNA-1
Gene Sequence

>Msa0620050

ATGGCCTCTGCCACAGAAGAATGCATTTGTTTGTTTTTGTGTCTCTTCCTCTTCCTTCATCTCTCAACTTCGACCACAGAGGACCCAATTCCGGCGCCGTGGCCGGAACAGTTCCACTCAGTCCTACTCCTCAACAGAAGCGGCTCTCTTCGAAAACAAGACTTATGGTACGATTGGCCCAATGGACGAAATTTCAACATTATCCAATACCAGCTTGATGTTCTCAAATATGACCTTGAATGGAACAATGGCACCACCTTTCTCTACACTCTCGACCCTTTCGAGCACACTTGCAAAGTGACTCAATATGATGTTGGTATTCCACGACCCAATTGGCTTGATGGTGCTAATTATTTGGGTCAACAATATGCCGACAATTTTCTGTGTAATGTTTGGGAGAAAGTCGAATTTATTTGGTACTTTGAAGATGTTCTCACTAAAAGACCTGTCAAGTGGATCTTCTACGATGGAATGATTACTGATGTGATGACATTTGAGGTTGGAGCAGTTCTGGATGATGCCCATTGGCAGGCTCCTGTCTATTGTTTTAGTAAGGCTGAGGCTGAACCCCAAATACACAAGAGAAGGAGCAGTTTCTCATTAGATTTAGAAGCTGCTATTGTTGATGATTTTCGTTGGACACTAATGAGTGAGATGAGATAG

Protein sequence

>Msa0620050

MASATEECICLFLCLFLFLHLSTSTTEDPIPAPWPEQFHSVLLLNRSGSLRKQDLWYDWPNGRNFNIIQYQLDVLKYDLEWNNGTTFLYTLDPFEHTCKVTQYDVGIPRPNWLDGANYLGQQYADNFLCNVWEKVEFIWYFEDVLTKRPVKWIFYDGMITDVMTFEVGAVLDDAHWQAPVYCFSKAEAEPQIHKRRSSFSLDLEAAIVDDFRWTLMSEMR*