AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1330080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1330080 MtrunA17_Chr4g0060951 100.000 228 0 0 1 228 54 281 8.37e-167 461
Msa1330080 MtrunA17_Chr7g0225861 39.171 217 124 3 7 220 7 218 2.56e-46 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1330080 AT5G61410.1 94.298 228 13 0 1 228 54 281 2.13e-159 442
Msa1330080 AT5G61410.2 94.298 228 13 0 1 228 54 281 2.13e-159 442
Msa1330080 AT3G01850.1 37.778 225 131 4 7 227 6 225 3.11e-47 155
Msa1330080 AT3G01850.2 37.778 225 131 4 7 227 6 225 3.11e-47 155
Msa1330080 AT1G63290.1 39.631 217 123 3 7 220 8 219 2.85e-44 148
Msa1330080 AT3G01850.3 37.629 194 112 4 38 227 10 198 7.40e-36 125
Msa1330080 AT3G01850.4 37.629 194 112 4 38 227 10 198 7.40e-36 125

Find 93 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCGCCAACTTTGCAAAAT+TGG 0.109693 8_4:-49094628 Msa1330080:CDS
AGAGGTCCAATAGTAATATT+TGG 0.187699 8_4:+49094404 None:intergenic
GCAGCTTACATTGTTTAAAA+TGG 0.189259 8_4:+49092162 None:intergenic
CATTCCTTTGTAGCTATAAA+AGG 0.220868 8_4:-49092246 Msa1330080:intron
TATCATAACATCTTTAATTC+AGG 0.299292 8_4:-49091692 Msa1330080:three_prime_UTR
GATAGCAAGCCATGCCTAAT+TGG 0.327172 8_4:+49091803 None:intergenic
GTTGCTGGTTCTGCTGTGTT+TGG 0.328175 8_4:-49092379 Msa1330080:CDS
CTCTCTAGGGTGTGAATCCT+TGG 0.328972 8_4:-49092837 Msa1330080:intron
TTGGATTCATGTTGATGTTA+TGG 0.329699 8_4:-49094441 Msa1330080:CDS
GGAGCTAATGCACTGGTTGC+TGG 0.334561 8_4:-49092394 Msa1330080:CDS
TCACAAACTTGTTTACAGTA+TGG 0.347766 8_4:+49091621 None:intergenic
TTTGTCCCAAATATTACTAT+TGG 0.352259 8_4:-49094410 Msa1330080:CDS
CTTTGCAAAATTGGGAGAAC+AGG 0.352968 8_4:-49094619 Msa1330080:intron
TTAGCGGAGTACCAGGGTTT+AGG 0.354271 8_4:+49093789 None:intergenic
TCCGCCAACTTTGCAAAATT+GGG 0.359542 8_4:-49094627 Msa1330080:CDS
TACTATCAGATTGTAACTTT+CGG 0.370556 8_4:-49091654 Msa1330080:three_prime_UTR
GAGGCCTTTCACACAGAAAC+TGG 0.388208 8_4:+49092198 None:intergenic
AAATCTGGCACCCGCTGATC+TGG 0.396879 8_4:+49094236 None:intergenic
AGCACCTTGTAAGCATTTGC+TGG 0.401136 8_4:+49092790 None:intergenic
CATATTTGTGTATAATCTCT+TGG 0.401167 8_4:-49091717 Msa1330080:three_prime_UTR
GCTCCTGCTTTGATGAAATC+TGG 0.406074 8_4:+49094221 None:intergenic
CCCTGTGACAGATTTACCTT+TGG 0.408758 8_4:-49094363 Msa1330080:CDS
TAGAGTTGGCTGGTTGTGAT+TGG 0.411673 8_4:-49094460 Msa1330080:CDS
GAGAAGATTGTGCGTGGAGA+AGG 0.423151 8_4:-49092953 Msa1330080:intron
ATATTGTCCTCGTTATCGTT+AGG 0.426759 8_4:-49091476 Msa1330080:three_prime_UTR
TCATGGTCAGCAGGCCAATT+AGG 0.433935 8_4:-49091817 Msa1330080:three_prime_UTR
AACCTGACAGATAATGTTCA+TGG 0.442153 8_4:-49091834 Msa1330080:intron
TCTGTAAACCCTGGCTTTGG+TGG 0.447445 8_4:-49093018 Msa1330080:CDS
GAGGTCCAATAGTAATATTT+GGG 0.451344 8_4:+49094405 None:intergenic
GATTAATTGCACGATGCAAA+TGG 0.460222 8_4:+49094159 None:intergenic
ATTTGGCAGGTGATTGAGGC+TGG 0.461400 8_4:-49092415 Msa1330080:intron
GTGAAAGGCCTCCGCGGTAT+CGG 0.465939 8_4:-49092187 Msa1330080:exon
CACCACCTGCAATTTCTCTC+TGG 0.465968 8_4:-49091781 Msa1330080:three_prime_UTR
GGTGCTGGCAGTGGTTGACT+TGG 0.467221 8_4:-49093052 Msa1330080:intron
AAACTCTGGCCACCAAAGCC+AGG 0.471474 8_4:+49093009 None:intergenic
GCAATAGAATATGTTCTTGA+TGG 0.472384 8_4:-49093764 Msa1330080:intron
ATTGCACTTAGCGGAGTACC+AGG 0.474775 8_4:+49093782 None:intergenic
ATGTCTGTAAACCCTGGCTT+TGG 0.475764 8_4:-49093021 Msa1330080:CDS
AAAAGCCTGGGAGCTAAAGC+TGG 0.477458 8_4:-49093818 Msa1330080:CDS
CTATTAACACCCATGGTGCT+AGG 0.482192 8_4:+49091517 None:intergenic
CAACTCCAGCTTTAGCTCCC+AGG 0.485580 8_4:+49093813 None:intergenic
ATCACAACAAAGGCATTACT+TGG 0.489578 8_4:+49091741 None:intergenic
AAGTTGGCGGAAAGAATAGA+TGG 0.490752 8_4:+49094639 None:intergenic
TGCACGATGCAAATGGATAG+TGG 0.498424 8_4:+49094166 None:intergenic
GTGCCAGATTTCATCAAAGC+AGG 0.505243 8_4:-49094224 Msa1330080:CDS
GCACCTTGTAAGCATTTGCT+GGG 0.508474 8_4:+49092791 None:intergenic
TAATTCCAGAGAGAAATTGC+AGG 0.511982 8_4:+49091776 None:intergenic
TATTACTATTGGACCTCTTG+TGG 0.513189 8_4:-49094399 Msa1330080:CDS
AGTTTCATCCCTAGCACCAT+GGG 0.513708 8_4:-49091526 Msa1330080:three_prime_UTR
ACATATTCTATTGCACTTAG+CGG 0.514934 8_4:+49093773 None:intergenic
TTTACCTTTGGATGTCCACC+TGG 0.515412 8_4:-49094351 Msa1330080:intron
GATAACGAGGACAATATAAG+AGG 0.515664 8_4:+49091482 None:intergenic
TCCAAAGGTAAATCTGTCAC+AGG 0.515740 8_4:+49094362 None:intergenic
AGATAATGTTCATGGTCAGC+AGG 0.516204 8_4:-49091826 Msa1330080:three_prime_UTR
TGTTATTTGGCAGGTGATTG+AGG 0.527723 8_4:-49092419 Msa1330080:intron
CTTGGCTCTCGATAAAACTC+TGG 0.531835 8_4:+49092995 None:intergenic
CCTTGGATTGAAGTGGATGG+TGG 0.541023 8_4:-49092820 Msa1330080:CDS
CTTGGATTGAAGTGGATGGT+GGG 0.541584 8_4:-49092819 Msa1330080:CDS
TACCCCAGCAAATGCTTACA+AGG 0.545343 8_4:-49092794 Msa1330080:intron
CTAGGTAAAAGCAGTAGAGT+TGG 0.552705 8_4:-49094474 Msa1330080:intron
GATTGTAGAACCAGATCAGC+GGG 0.553131 8_4:-49094246 Msa1330080:CDS
TGAGCCAGTTTCTGTGTGAA+AGG 0.553781 8_4:-49092202 Msa1330080:exon
GAAACTGAATGATATTAACT+TGG 0.556192 8_4:+49091543 None:intergenic
GTAAAAGCAGTAGAGTTGGC+TGG 0.557874 8_4:-49094470 Msa1330080:CDS
GGAGCTAAAGATTATGCTGA+AGG 0.567422 8_4:-49092358 Msa1330080:intron
TTAATTATGTCTGTAAACCC+TGG 0.567653 8_4:-49093027 Msa1330080:CDS
ATTCATGTTGATGTTATGGA+TGG 0.568834 8_4:-49094437 Msa1330080:CDS
TATTAACACCCATGGTGCTA+GGG 0.568950 8_4:+49091518 None:intergenic
CAGTTTCATCCCTAGCACCA+TGG 0.575551 8_4:-49091527 Msa1330080:three_prime_UTR
AACTCTGGCCACCAAAGCCA+GGG 0.576163 8_4:+49093010 None:intergenic
CAAACTTGTTTACAGTATGG+TGG 0.581814 8_4:+49091624 None:intergenic
ACAAATATGCATCACAACAA+AGG 0.584229 8_4:+49091731 None:intergenic
CGCAATGCATCAACCACAAG+AGG 0.585518 8_4:+49094386 None:intergenic
TTTCACACAGAAACTGGCTC+AGG 0.586572 8_4:+49092204 None:intergenic
CCACCATCCACTTCAATCCA+AGG 0.590960 8_4:+49092820 None:intergenic
AATACCAGGTGGACATCCAA+AGG 0.598223 8_4:+49094347 None:intergenic
TGAGGCTGGAGCTAATGCAC+TGG 0.611831 8_4:-49092401 Msa1330080:CDS
GTCAGCAGGCCAATTAGGCA+TGG 0.614879 8_4:-49091812 Msa1330080:three_prime_UTR
TGTGAATCCTTGGATTGAAG+TGG 0.621250 8_4:-49092827 Msa1330080:CDS
GCTGGAGTTGTCCTAAACCC+TGG 0.635850 8_4:-49093800 Msa1330080:CDS
TTCTGTGTGAAAGGCCTCCG+CGG 0.641840 8_4:-49092193 Msa1330080:exon
TTGGATTGAAGTGGATGGTG+GGG 0.646043 8_4:-49092818 Msa1330080:CDS
AAATGGATCCGATACCGCGG+AGG 0.659044 8_4:+49092179 None:intergenic
AATCCTTGGATTGAAGTGGA+TGG 0.661026 8_4:-49092823 Msa1330080:CDS
CCAAAGGTAAATCTGTCACA+GGG 0.662632 8_4:+49094363 None:intergenic
TGATTTGAGAAGATTGTGCG+TGG 0.667135 8_4:-49092959 Msa1330080:CDS
CACCTTGTAAGCATTTGCTG+GGG 0.672494 8_4:+49092792 None:intergenic
GAATGATCTATTAACACCCA+TGG 0.672715 8_4:+49091510 None:intergenic
TTGCACTTAGCGGAGTACCA+GGG 0.677738 8_4:+49093783 None:intergenic
TGATTGTAGAACCAGATCAG+CGG 0.686244 8_4:-49094247 Msa1330080:CDS
TTCCAGAGAGAAATTGCAGG+TGG 0.690322 8_4:+49091779 None:intergenic
TTAAAATGGATCCGATACCG+CGG 0.731129 8_4:+49092176 None:intergenic
TTTGCATCCTAACGATAACG+AGG 0.747182 8_4:+49091469 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATATACTGAAAATAAA+CGG + chr8_4:49092407-49092426 None:intergenic 10.0%
!! AAAATCTTATAATCTTATTA+TGG - chr8_4:49093036-49093055 Msa1330080:CDS 10.0%
!!! TTTTTATTTTATTTTACTCT+TGG - chr8_4:49094154-49094173 Msa1330080:intron 10.0%
!! TTTAAAAGTTAAATATGTCT+TGG - chr8_4:49092168-49092187 Msa1330080:intron 15.0%
!!! AATATTAATGATGCTATTTA+TGG - chr8_4:49092429-49092448 Msa1330080:intron 15.0%
!! AACAATAAAAATTTAACACA+TGG + chr8_4:49092516-49092535 None:intergenic 15.0%
!! AATTATAAACAGAATAGAAA+AGG - chr8_4:49092615-49092634 Msa1330080:intron 15.0%
!!! AATTAGCTTAATTTCAAATT+TGG - chr8_4:49092891-49092910 Msa1330080:intron 15.0%
!! TATCTCATAGAAAAAAAAAA+CGG + chr8_4:49093192-49093211 None:intergenic 15.0%
!! TTAATATTTAAGAGTTCTAT+TGG - chr8_4:49093513-49093532 Msa1330080:intron 15.0%
!!! ATTTTCAGTATTATGTTATT+TGG - chr8_4:49093677-49093696 Msa1330080:intron 15.0%
!! TGTATTTGACAATTATACAA+AGG + chr8_4:49092094-49092113 None:intergenic 20.0%
!! AAATGAATTCAAAAAGGAAA+AGG + chr8_4:49092375-49092394 None:intergenic 20.0%
!! CAGAAAAAATGAATTCAAAA+AGG + chr8_4:49092381-49092400 None:intergenic 20.0%
!!! TTACCAATATTTTTAGAACA+TGG + chr8_4:49092587-49092606 None:intergenic 20.0%
!!! AATCAGAAATTTTCTTTACT+TGG + chr8_4:49093135-49093154 None:intergenic 20.0%
!!! TTTTTTTTTCTATGAGATAG+TGG - chr8_4:49093193-49093212 Msa1330080:intron 20.0%
!! TCATTCTAAATTATAAGTGA+TGG + chr8_4:49093367-49093386 None:intergenic 20.0%
!! AAAGATTAAATTATGTGAGT+AGG - chr8_4:49093784-49093803 Msa1330080:CDS 20.0%
!! AATTAATTTAGAAACCTTGA+TGG + chr8_4:49093982-49094001 None:intergenic 20.0%
!! TATCATAACATCTTTAATTC+AGG - chr8_4:49094417-49094436 Msa1330080:CDS 20.0%
!!! TGTGATTTTGACATTATATA+AGG - chr8_4:49094506-49094525 Msa1330080:intron 20.0%
!! AAAAACTGAAAAATTATAGC+TGG + chr8_4:49094543-49094562 None:intergenic 20.0%
! AGAAATATGCTAAAATGACT+TGG + chr8_4:49091571-49091590 None:intergenic 25.0%
! TTTGTCCCAAATATTACTAT+TGG - chr8_4:49091699-49091718 Msa1330080:three_prime_UTR 25.0%
! TATGTATAAAGATGAATACC+AGG + chr8_4:49091779-49091798 None:intergenic 25.0%
! CTAAGTACTAACATTAGTAA+AGG - chr8_4:49092194-49092213 Msa1330080:exon 25.0%
! CTTAATCAGATAAATTCAAC+AGG + chr8_4:49092255-49092274 None:intergenic 25.0%
! CTGATTAAGTTTCTTGATTT+AGG - chr8_4:49092266-49092285 Msa1330080:intron 25.0%
!!! GTTCCATGTTCTAAAAATAT+TGG - chr8_4:49092581-49092600 Msa1330080:intron 25.0%
!!! ACCAAATTCATTTTAGTTTC+TGG - chr8_4:49092682-49092701 Msa1330080:intron 25.0%
! ACCAGAAACTAAAATGAATT+TGG + chr8_4:49092686-49092705 None:intergenic 25.0%
! TTATAATCTTATTATGGTGC+TGG - chr8_4:49093042-49093061 Msa1330080:CDS 25.0%
! TTCCTTACATAATCTCTAAT+TGG - chr8_4:49093242-49093261 Msa1330080:intron 25.0%
! ATAATCCCAACATAAAACAT+TGG - chr8_4:49093453-49093472 Msa1330080:intron 25.0%
! TAATCCCAACATAAAACATT+GGG - chr8_4:49093454-49093473 Msa1330080:intron 25.0%
! CAGTAGTAAACAAATAATGA+AGG - chr8_4:49093570-49093589 Msa1330080:intron 25.0%
! AATTCAATGAACAAAGTTTG+TGG + chr8_4:49093600-49093619 None:intergenic 25.0%
!! TATTCCTTTTATAGCTACAA+AGG + chr8_4:49093870-49093889 None:intergenic 25.0%
!!! TGAAGTTTCAGTTTTTTGAT+TGG - chr8_4:49094004-49094023 Msa1330080:intron 25.0%
!!! GAAGTTTCAGTTTTTTGATT+GGG - chr8_4:49094005-49094024 Msa1330080:intron 25.0%
! TTCACATTCGTTTCTTATAT+TGG + chr8_4:49094062-49094081 None:intergenic 25.0%
! CATATTTGTGTATAATCTCT+TGG - chr8_4:49094392-49094411 Msa1330080:CDS 25.0%
! TACTATCAGATTGTAACTTT+CGG - chr8_4:49094455-49094474 Msa1330080:CDS 25.0%
! GAAACTGAATGATATTAACT+TGG + chr8_4:49094569-49094588 None:intergenic 25.0%
TTGGATTCATGTTGATGTTA+TGG - chr8_4:49091668-49091687 Msa1330080:three_prime_UTR 30.0%
ATTCATGTTGATGTTATGGA+TGG - chr8_4:49091672-49091691 Msa1330080:three_prime_UTR 30.0%
GAGGTCCAATAGTAATATTT+GGG + chr8_4:49091707-49091726 None:intergenic 30.0%
AGAGGTCCAATAGTAATATT+TGG + chr8_4:49091708-49091727 None:intergenic 30.0%
ATCGTGCAATTAATCAAGTA+AGG - chr8_4:49091958-49091977 Msa1330080:intron 30.0%
CAAAGGCTTGAATATATGTT+TGG + chr8_4:49092077-49092096 None:intergenic 30.0%
ATACACATCCATATATGTGA+TGG + chr8_4:49092146-49092165 None:intergenic 30.0%
ATCACATATATGGATGTGTA+TGG - chr8_4:49092145-49092164 Msa1330080:intron 30.0%
TTGATTTAGGTAAAAAGCCT+GGG - chr8_4:49092279-49092298 Msa1330080:intron 30.0%
ACATATTCTATTGCACTTAG+CGG + chr8_4:49092339-49092358 None:intergenic 30.0%
GCAATAGAATATGTTCTTGA+TGG - chr8_4:49092345-49092364 Msa1330080:intron 30.0%
! AATGATGCTATTTATGGCTT+AGG - chr8_4:49092435-49092454 Msa1330080:intron 30.0%
AACTCTTAGTTTACCGATAT+TGG + chr8_4:49092484-49092503 None:intergenic 30.0%
! CAGAATAGAAAAGGTTTGTT+TGG - chr8_4:49092624-49092643 Msa1330080:intron 30.0%
GACATTCATAGAATATTCAG+TGG + chr8_4:49092777-49092796 None:intergenic 30.0%
! GCTTGACTTTTCAAATTTTG+TGG + chr8_4:49092799-49092818 None:intergenic 30.0%
AATTTGAAAAGTCAAGCATC+TGG - chr8_4:49092802-49092821 Msa1330080:CDS 30.0%
TTAATTATGTCTGTAAACCC+TGG - chr8_4:49093082-49093101 Msa1330080:intron 30.0%
ATTATGTAAGGAATAAGAGC+CGG + chr8_4:49093235-49093254 None:intergenic 30.0%
GACCAATTAGAGATTATGTA+AGG + chr8_4:49093247-49093266 None:intergenic 30.0%
! GTTTCCCAATGTTTTATGTT+GGG + chr8_4:49093461-49093480 None:intergenic 30.0%
! TGTTTCCCAATGTTTTATGT+TGG + chr8_4:49093462-49093481 None:intergenic 30.0%
! TCAGTATTATGTTATTTGGC+AGG - chr8_4:49093681-49093700 Msa1330080:intron 30.0%
GATTAAATTATGTGAGTAGG+AGG - chr8_4:49093787-49093806 Msa1330080:CDS 30.0%
TGTGATTCTGATATTTGTCA+TGG - chr8_4:49093836-49093855 Msa1330080:intron 30.0%
! CTTTTATAGCTACAAAGGAA+TGG + chr8_4:49093865-49093884 None:intergenic 30.0%
CATTCCTTTGTAGCTATAAA+AGG - chr8_4:49093863-49093882 Msa1330080:intron 30.0%
GCAGCTTACATTGTTTAAAA+TGG + chr8_4:49093950-49093969 None:intergenic 30.0%
! TTAAACTTGCAACTCGATTT+TGG - chr8_4:49094105-49094124 Msa1330080:intron 30.0%
ATGTGAAAAATATTATCCCG+AGG - chr8_4:49094210-49094229 Msa1330080:CDS 30.0%
AATTAGAATCAGATTGTCCT+CGG + chr8_4:49094230-49094249 None:intergenic 30.0%
ACAAATATGCATCACAACAA+AGG + chr8_4:49094381-49094400 None:intergenic 30.0%
! TCACAAACTTGTTTACAGTA+TGG + chr8_4:49094491-49094510 None:intergenic 30.0%
! TTCTCCCAATTTTGCAAAGT+TGG + chr8_4:49091489-49091508 None:intergenic 35.0%
TTGTCACCAATCATAACTGT+TGG - chr8_4:49091593-49091612 Msa1330080:three_prime_UTR 35.0%
AGAACTCCAACAGTTATGAT+TGG + chr8_4:49091602-49091621 None:intergenic 35.0%
TTGGAGTTCTTGTGTTATCT+TGG - chr8_4:49091612-49091631 Msa1330080:three_prime_UTR 35.0%
TATTACTATTGGACCTCTTG+TGG - chr8_4:49091710-49091729 Msa1330080:three_prime_UTR 35.0%
GTATAAAGATGAATACCAGG+TGG + chr8_4:49091776-49091795 None:intergenic 35.0%
GATTAATTGCACGATGCAAA+TGG + chr8_4:49091953-49091972 None:intergenic 35.0%
TGCAGTAACCATCACATATA+TGG - chr8_4:49092135-49092154 Msa1330080:intron 35.0%
ATTCAACAGGAAACTGAAAC+TGG + chr8_4:49092242-49092261 None:intergenic 35.0%
CTTGATTTAGGTAAAAAGCC+TGG - chr8_4:49092278-49092297 Msa1330080:intron 35.0%
TGGTAACCACATAAGCATAT+GGG + chr8_4:49092464-49092483 None:intergenic 35.0%
! TTGGTAACCACATAAGCATA+TGG + chr8_4:49092465-49092484 None:intergenic 35.0%
GCTTATGTGGTTACCAATAT+CGG - chr8_4:49092468-49092487 Msa1330080:intron 35.0%
!! AGTTTCTGGTGAATTACACT+TGG - chr8_4:49092696-49092715 Msa1330080:intron 35.0%
CTTGACTTTCATCATCATAG+GGG + chr8_4:49092919-49092938 None:intergenic 35.0%
CCTTGACTTTCATCATCATA+GGG + chr8_4:49092920-49092939 None:intergenic 35.0%
ACCTTGACTTTCATCATCAT+AGG + chr8_4:49092921-49092940 None:intergenic 35.0%
TTATGTAAGGAATAAGAGCC+GGG + chr8_4:49093234-49093253 None:intergenic 35.0%
!! TCAATGATTGCCTTTTCAAG+AGG - chr8_4:49093430-49093449 Msa1330080:intron 35.0%
TTGGGATTATCCTCTTGAAA+AGG + chr8_4:49093443-49093462 None:intergenic 35.0%
!! TGAGCAAAAAAAGAAGCACT+TGG + chr8_4:49093539-49093558 None:intergenic 35.0%
TACGTGACATAGAAAACCAT+AGG - chr8_4:49093631-49093650 Msa1330080:intron 35.0%
ATTAGACCCTACAACTCAAA+CGG + chr8_4:49093659-49093678 None:intergenic 35.0%
ATTAGAATCAGATTGTCCTC+GGG + chr8_4:49094229-49094248 None:intergenic 35.0%
AACCTGACAGATAATGTTCA+TGG - chr8_4:49094275-49094294 Msa1330080:intron 35.0%
TAATTCCAGAGAGAAATTGC+AGG + chr8_4:49094336-49094355 None:intergenic 35.0%
!! ATCACAACAAAGGCATTACT+TGG + chr8_4:49094371-49094390 None:intergenic 35.0%
! CAAACTTGTTTACAGTATGG+TGG + chr8_4:49094488-49094507 None:intergenic 35.0%
GAATGATCTATTAACACCCA+TGG + chr8_4:49094602-49094621 None:intergenic 35.0%
GATAACGAGGACAATATAAG+AGG + chr8_4:49094630-49094649 None:intergenic 35.0%
ATATTGTCCTCGTTATCGTT+AGG - chr8_4:49094633-49094652 Msa1330080:CDS 35.0%
AAGTTGGCGGAAAGAATAGA+TGG + chr8_4:49091473-49091492 None:intergenic 40.0%
TTCCGCCAACTTTGCAAAAT+TGG - chr8_4:49091481-49091500 Msa1330080:three_prime_UTR 40.0%
TCCGCCAACTTTGCAAAATT+GGG - chr8_4:49091482-49091501 Msa1330080:three_prime_UTR 40.0%
! TCCCAATTTTGCAAAGTTGG+CGG + chr8_4:49091486-49091505 None:intergenic 40.0%
CTTTGCAAAATTGGGAGAAC+AGG - chr8_4:49091490-49091509 Msa1330080:three_prime_UTR 40.0%
GTTCTTGTGTTATCTTGGCT+AGG - chr8_4:49091617-49091636 Msa1330080:three_prime_UTR 40.0%
CTAGGTAAAAGCAGTAGAGT+TGG - chr8_4:49091635-49091654 Msa1330080:three_prime_UTR 40.0%
CCAAAGGTAAATCTGTCACA+GGG + chr8_4:49091749-49091768 None:intergenic 40.0%
TCCAAAGGTAAATCTGTCAC+AGG + chr8_4:49091750-49091769 None:intergenic 40.0%
TGATTGTAGAACCAGATCAG+CGG - chr8_4:49091862-49091881 Msa1330080:intron 40.0%
CTGCATTCTTGACAAGATTC+TGG + chr8_4:49092120-49092139 None:intergenic 40.0%
AGGTTTCCCATATGCTTATG+TGG - chr8_4:49092455-49092474 Msa1330080:intron 40.0%
! CCCTATGATGATGAAAGTCA+AGG - chr8_4:49092917-49092936 Msa1330080:intron 40.0%
TGATTTGAGAAGATTGTGCG+TGG - chr8_4:49093150-49093169 Msa1330080:intron 40.0%
TATGTAAGGAATAAGAGCCG+GGG + chr8_4:49093233-49093252 None:intergenic 40.0%
! TAATTGGTCTCTCTCTCTCT+AGG - chr8_4:49093258-49093277 Msa1330080:intron 40.0%
! AATTGGTCTCTCTCTCTCTA+GGG - chr8_4:49093259-49093278 Msa1330080:intron 40.0%
TGTGAATCCTTGGATTGAAG+TGG - chr8_4:49093282-49093301 Msa1330080:intron 40.0%
AATCCTTGGATTGAAGTGGA+TGG - chr8_4:49093286-49093305 Msa1330080:intron 40.0%
TACAACTCAAACGGATCCTA+TGG + chr8_4:49093650-49093669 None:intergenic 40.0%
!! ATAGGATCCGTTTGAGTTGT+AGG - chr8_4:49093649-49093668 Msa1330080:intron 40.0%
!! TAGGATCCGTTTGAGTTGTA+GGG - chr8_4:49093650-49093669 Msa1330080:intron 40.0%
! TGTTATTTGGCAGGTGATTG+AGG - chr8_4:49093690-49093709 Msa1330080:intron 40.0%
GGAGCTAAAGATTATGCTGA+AGG - chr8_4:49093751-49093770 Msa1330080:intron 40.0%
TTAAAATGGATCCGATACCG+CGG + chr8_4:49093936-49093955 None:intergenic 40.0%
GACCATGAACATTATCTGTC+AGG + chr8_4:49094280-49094299 None:intergenic 40.0%
AGATAATGTTCATGGTCAGC+AGG - chr8_4:49094283-49094302 Msa1330080:intron 40.0%
! TATTAACACCCATGGTGCTA+GGG + chr8_4:49094594-49094613 None:intergenic 40.0%
TTTGCATCCTAACGATAACG+AGG + chr8_4:49094643-49094662 None:intergenic 40.0%
GTAAAAGCAGTAGAGTTGGC+TGG - chr8_4:49091639-49091658 Msa1330080:three_prime_UTR 45.0%
! TAGAGTTGGCTGGTTGTGAT+TGG - chr8_4:49091649-49091668 Msa1330080:three_prime_UTR 45.0%
CCCTGTGACAGATTTACCTT+TGG - chr8_4:49091746-49091765 Msa1330080:three_prime_UTR 45.0%
TTTACCTTTGGATGTCCACC+TGG - chr8_4:49091758-49091777 Msa1330080:three_prime_UTR 45.0%
AATACCAGGTGGACATCCAA+AGG + chr8_4:49091765-49091784 None:intergenic 45.0%
GATTGTAGAACCAGATCAGC+GGG - chr8_4:49091863-49091882 Msa1330080:intron 45.0%
GTGCCAGATTTCATCAAAGC+AGG - chr8_4:49091885-49091904 Msa1330080:intron 45.0%
GCTCCTGCTTTGATGAAATC+TGG + chr8_4:49091891-49091910 None:intergenic 45.0%
TGCACGATGCAAATGGATAG+TGG + chr8_4:49091946-49091965 None:intergenic 45.0%
ACAGGAAACTGAAACTGGAG+TGG + chr8_4:49092237-49092256 None:intergenic 45.0%
!! TCTTATTATGGTGCTGGCAG+TGG - chr8_4:49093048-49093067 Msa1330080:intron 45.0%
ATGTCTGTAAACCCTGGCTT+TGG - chr8_4:49093088-49093107 Msa1330080:intron 45.0%
! CTTGGCTCTCGATAAAACTC+TGG + chr8_4:49093117-49093136 None:intergenic 45.0%
! TGGATTTTGTGTTTTCCCCC+CGG - chr8_4:49093213-49093232 Msa1330080:intron 45.0%
ATGTAAGGAATAAGAGCCGG+GGG + chr8_4:49093232-49093251 None:intergenic 45.0%
CTTGGATTGAAGTGGATGGT+GGG - chr8_4:49093290-49093309 Msa1330080:intron 45.0%
TTGGATTGAAGTGGATGGTG+GGG - chr8_4:49093291-49093310 Msa1330080:intron 45.0%
TACCCCAGCAAATGCTTACA+AGG - chr8_4:49093315-49093334 Msa1330080:intron 45.0%
! CACCTTGTAAGCATTTGCTG+GGG + chr8_4:49093320-49093339 None:intergenic 45.0%
GCACCTTGTAAGCATTTGCT+GGG + chr8_4:49093321-49093340 None:intergenic 45.0%
AGCACCTTGTAAGCATTTGC+TGG + chr8_4:49093322-49093341 None:intergenic 45.0%
! GGAGGCATACATTGCAATAG+TGG - chr8_4:49093805-49093824 Msa1330080:CDS 45.0%
! TTTCACACAGAAACTGGCTC+AGG + chr8_4:49093908-49093927 None:intergenic 45.0%
TGAGCCAGTTTCTGTGTGAA+AGG - chr8_4:49093907-49093926 Msa1330080:intron 45.0%
TGCGTGAAAAAATGTGCTGC+TGG - chr8_4:49094178-49094197 Msa1330080:CDS 45.0%
GATAGCAAGCCATGCCTAAT+TGG + chr8_4:49094309-49094328 None:intergenic 45.0%
TTCCAGAGAGAAATTGCAGG+TGG + chr8_4:49094333-49094352 None:intergenic 45.0%
AGTTTCATCCCTAGCACCAT+GGG - chr8_4:49094583-49094602 Msa1330080:intron 45.0%
CTATTAACACCCATGGTGCT+AGG + chr8_4:49094595-49094614 None:intergenic 45.0%
CGCAATGCATCAACCACAAG+AGG + chr8_4:49091726-49091745 None:intergenic 50.0%
AAAAGCCTGGGAGCTAAAGC+TGG - chr8_4:49092291-49092310 Msa1330080:intron 50.0%
! TTAGCGGAGTACCAGGGTTT+AGG + chr8_4:49092323-49092342 None:intergenic 50.0%
! TTGCACTTAGCGGAGTACCA+GGG + chr8_4:49092329-49092348 None:intergenic 50.0%
! ATTGCACTTAGCGGAGTACC+AGG + chr8_4:49092330-49092349 None:intergenic 50.0%
!! TCTGTAAACCCTGGCTTTGG+TGG - chr8_4:49093091-49093110 Msa1330080:intron 50.0%
GAGAAGATTGTGCGTGGAGA+AGG - chr8_4:49093156-49093175 Msa1330080:intron 50.0%
AGATTGTGCGTGGAGAAGGT+AGG - chr8_4:49093160-49093179 Msa1330080:intron 50.0%
TGTAAGGAATAAGAGCCGGG+GGG + chr8_4:49093231-49093250 None:intergenic 50.0%
!! CTCTCTAGGGTGTGAATCCT+TGG - chr8_4:49093272-49093291 Msa1330080:intron 50.0%
CCACCATCCACTTCAATCCA+AGG + chr8_4:49093292-49093311 None:intergenic 50.0%
CCTTGGATTGAAGTGGATGG+TGG - chr8_4:49093289-49093308 Msa1330080:intron 50.0%
ATTTGGCAGGTGATTGAGGC+TGG - chr8_4:49093694-49093713 Msa1330080:intron 50.0%
!! GTTGCTGGTTCTGCTGTGTT+TGG - chr8_4:49093730-49093749 Msa1330080:intron 50.0%
GAGGCCTTTCACACAGAAAC+TGG + chr8_4:49093914-49093933 None:intergenic 50.0%
GCTGCATGTTTGCACCATCA+AGG - chr8_4:49093965-49093984 Msa1330080:intron 50.0%
TCATGGTCAGCAGGCCAATT+AGG - chr8_4:49094292-49094311 Msa1330080:intron 50.0%
CACCACCTGCAATTTCTCTC+TGG - chr8_4:49094328-49094347 Msa1330080:intron 50.0%
CAGTTTCATCCCTAGCACCA+TGG - chr8_4:49094582-49094601 Msa1330080:intron 50.0%
AAATCTGGCACCCGCTGATC+TGG + chr8_4:49091876-49091895 None:intergenic 55.0%
! CAACTCCAGCTTTAGCTCCC+AGG + chr8_4:49092299-49092318 None:intergenic 55.0%
GCTGGAGTTGTCCTAAACCC+TGG - chr8_4:49092309-49092328 Msa1330080:intron 55.0%
AACTCTGGCCACCAAAGCCA+GGG + chr8_4:49093102-49093121 None:intergenic 55.0%
AAACTCTGGCCACCAAAGCC+AGG + chr8_4:49093103-49093122 None:intergenic 55.0%
TGAGGCTGGAGCTAATGCAC+TGG - chr8_4:49093708-49093727 Msa1330080:intron 55.0%
!! GGAGCTAATGCACTGGTTGC+TGG - chr8_4:49093715-49093734 Msa1330080:intron 55.0%
TTCTGTGTGAAAGGCCTCCG+CGG - chr8_4:49093916-49093935 Msa1330080:intron 55.0%
AAATGGATCCGATACCGCGG+AGG + chr8_4:49093933-49093952 None:intergenic 55.0%
GTCAGCAGGCCAATTAGGCA+TGG - chr8_4:49094297-49094316 Msa1330080:intron 55.0%
!! GGTGCTGGCAGTGGTTGACT+TGG - chr8_4:49093057-49093076 Msa1330080:intron 60.0%
GTGAAAGGCCTCCGCGGTAT+CGG - chr8_4:49093922-49093941 Msa1330080:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 49091446 49094685 49091446 ID=Msa1330080;Name=Msa1330080
chr8_4 mRNA 49091446 49094685 49091446 ID=Msa1330080-mRNA-1;Parent=Msa1330080;Name=Msa1330080-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|1|1|1|0.87|0.77|9|436|228
chr8_4 exon 49091446 49091846 49091446 ID=Msa1330080-mRNA-1:exon:14203;Parent=Msa1330080-mRNA-1
chr8_4 exon 49092171 49092255 49092171 ID=Msa1330080-mRNA-1:exon:14202;Parent=Msa1330080-mRNA-1
chr8_4 exon 49092359 49092428 49092359 ID=Msa1330080-mRNA-1:exon:14201;Parent=Msa1330080-mRNA-1
chr8_4 exon 49092795 49092851 49092795 ID=Msa1330080-mRNA-1:exon:14200;Parent=Msa1330080-mRNA-1
chr8_4 exon 49092954 49093063 49092954 ID=Msa1330080-mRNA-1:exon:14199;Parent=Msa1330080-mRNA-1
chr8_4 exon 49093765 49093843 49093765 ID=Msa1330080-mRNA-1:exon:14198;Parent=Msa1330080-mRNA-1
chr8_4 exon 49094157 49094270 49094157 ID=Msa1330080-mRNA-1:exon:14197;Parent=Msa1330080-mRNA-1
chr8_4 exon 49094352 49094492 49094352 ID=Msa1330080-mRNA-1:exon:14196;Parent=Msa1330080-mRNA-1
chr8_4 exon 49094620 49094685 49094620 ID=Msa1330080-mRNA-1:exon:14195;Parent=Msa1330080-mRNA-1
chr8_4 CDS 49094620 49094685 49094620 ID=Msa1330080-mRNA-1:cds;Parent=Msa1330080-mRNA-1
chr8_4 CDS 49094352 49094492 49094352 ID=Msa1330080-mRNA-1:cds;Parent=Msa1330080-mRNA-1
chr8_4 CDS 49094157 49094270 49094157 ID=Msa1330080-mRNA-1:cds;Parent=Msa1330080-mRNA-1
chr8_4 CDS 49093765 49093843 49093765 ID=Msa1330080-mRNA-1:cds;Parent=Msa1330080-mRNA-1
chr8_4 CDS 49092954 49093063 49092954 ID=Msa1330080-mRNA-1:cds;Parent=Msa1330080-mRNA-1
chr8_4 CDS 49092795 49092851 49092795 ID=Msa1330080-mRNA-1:cds;Parent=Msa1330080-mRNA-1
chr8_4 CDS 49092359 49092428 49092359 ID=Msa1330080-mRNA-1:cds;Parent=Msa1330080-mRNA-1
chr8_4 CDS 49092206 49092255 49092206 ID=Msa1330080-mRNA-1:cds;Parent=Msa1330080-mRNA-1
chr8_4 three_prime_UTR 49092171 49092205 49092171 ID=Msa1330080-mRNA-1:three_prime_utr;Parent=Msa1330080-mRNA-1
chr8_4 three_prime_UTR 49091446 49091846 49091446 ID=Msa1330080-mRNA-1:three_prime_utr;Parent=Msa1330080-mRNA-1
Gene Sequence

>Msa1330080

TCAAAAAGTGATATCATTGTTTCTCCATCTATTCTTTCCGCCAACTTTGCAAAATTGGGAGAACAGGTAAAAGCAGTAGAGTTGGCTGGTTGTGATTGGATTCATGTTGATGTTATGGATGGTCGCTTTGTCCCAAATATTACTATTGGACCTCTTGTGGTTGATGCATTGCGCCCTGTGACAGATTTACCTTTGGATGTCCACCTGATGATTGTAGAACCAGATCAGCGGGTGCCAGATTTCATCAAAGCAGGAGCTGACATTGTCAGTATTCATTGCGAACAATCTTCCACTATCCATTTGCATCGTGCAATTAATCAAGTAAAAAGCCTGGGAGCTAAAGCTGGAGTTGTCCTAAACCCTGGTACTCCGCTAAGTGCAATAGAATATGTTCTTGATGTGGTTGACTTGGTCTTAATTATGTCTGTAAACCCTGGCTTTGGTGGCCAGAGTTTTATCGAGAGCCAAGTAAAGAAAATTTCTGATTTGAGAAGATTGTGCGTGGAGAAGGGTGTGAATCCTTGGATTGAAGTGGATGGTGGGGTTACCCCAGCAAATGCTTACAAGGTGATTGAGGCTGGAGCTAATGCACTGGTTGCTGGTTCTGCTGTGTTTGGAGCTAAAGATTATGCTGAAGCTATAAAAGGAATAAAAGCTAGCAAAAGACCTGAGCCAGTTTCTGTGTGA

Protein sequence

>Msa1330080

SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPDQRVPDFIKAGADIVSIHCEQSSTIHLHRAINQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCVEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPEPVSV*