AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0619960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619960 MtrunA17_Chr8g0385601 91.892 222 16 1 1 220 1 222 8.45e-153 422
Msa0619960 MtrunA17_Chr8g0385631 82.192 219 39 0 1 219 1 219 3.49e-128 360
Msa0619960 MtrunA17_Chr3g0131541 66.842 190 56 3 1 187 1 186 1.96e-90 265
Msa0619960 MtrunA17_Chr3g0131551 61.579 190 70 2 1 187 7 196 5.14e-83 246
Msa0619960 MtrunA17_Chr8g0385611 71.975 157 44 0 1 157 1 157 1.88e-76 227
Msa0619960 MtrunA17_Chr8g0385621 74.545 55 13 1 158 211 1 55 4.51e-21 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619960 AT3G23760.1 62.162 185 67 2 9 191 11 194 1.45e-83 247
Msa0619960 AT4G14100.1 55.556 198 87 1 9 206 8 204 1.10e-80 240

Find 81 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCTTCTCTTGTGTATT+TGG 0.089272 4_2:-71287043 None:intergenic
GCTTGATGGTGCTAATTATT+TGG 0.169784 4_2:+71286702 Msa0619960:CDS
TATAATAATAATCTTTGTTT+TGG 0.190983 4_2:+71287183 Msa0619960:three_prime_UTR
GCTCCTTCTCTTGTGTATTT+GGG 0.191163 4_2:-71287042 None:intergenic
TCCGGCCACGGCGCCGGAAT+TGG 0.215529 4_2:-71286451 None:intergenic
GGCCATTGCTTTGCTGATTT+CGG 0.266745 4_2:-71286350 None:intergenic
GGGAGAAAGTCGAATTTATT+TGG 0.267906 4_2:+71286761 Msa0619960:CDS
CCACGACCCAATTGGCTTGA+TGG 0.304709 4_2:+71286688 Msa0619960:CDS
CTTGATGGTGCTAATTATTT+GGG 0.312059 4_2:+71286703 Msa0619960:CDS
TGTTTCTCAACCTTTAGTTT+TGG 0.347136 4_2:-71286257 None:intergenic
CCGGCCACGGCGCCGGAATT+GGG 0.367218 4_2:-71286450 None:intergenic
ATTTGAGGTTGGAGCAGTTC+TGG 0.367268 4_2:+71286965 Msa0619960:CDS
TGAGAACATCAAGCTGGTAT+TGG 0.386461 4_2:-71286570 None:intergenic
AAATACTATCCTTAACTTGA+TGG 0.392076 4_2:+71286209 Msa0619960:five_prime_UTR
AGGACTGAGTGGAACTGTTC+CGG 0.404511 4_2:-71286469 None:intergenic
ATTAGCACCATCAAGCCAAT+TGG 0.405118 4_2:-71286695 None:intergenic
GACCACAGAGGACCCAATTC+CGG 0.405830 4_2:+71286438 Msa0619960:CDS
CGTTACTTCCCATCAAGTTA+AGG 0.406563 4_2:-71286218 None:intergenic
TATAAATCATATGATATTGT+TGG 0.417733 4_2:-71287142 None:intergenic
AAGCTTTGCTTGGGCATCAA+TGG 0.423625 4_2:+71287231 Msa0619960:three_prime_UTR
TTCTCAAATATGACCTTGAA+TGG 0.424620 4_2:+71286587 Msa0619960:CDS
GGTTTATAATAAGCTTTGCT+TGG 0.428823 4_2:+71287221 Msa0619960:three_prime_UTR
AATGTTGAAATTTCGTCCAT+TGG 0.430457 4_2:-71286545 None:intergenic
CAGTATGAACGACGTGGATA+AGG 0.432799 4_2:-71286304 None:intergenic
ATGTTGAAATTTCGTCCATT+GGG 0.444878 4_2:-71286544 None:intergenic
CTCTTCGAAAACAAGACTTA+TGG 0.444999 4_2:+71286512 Msa0619960:CDS
ATTCACCCAGCCAAAACTAA+AGG 0.447343 4_2:+71286247 Msa0619960:five_prime_UTR
AACTGTTCCGGCCACGGCGC+CGG 0.448851 4_2:-71286457 None:intergenic
TGGTGCCATTGTTCCATTCA+AGG 0.450465 4_2:-71286600 None:intergenic
ATAAATCATATGATATTGTT+GGG 0.451260 4_2:-71287141 None:intergenic
CCCAATTCCGGCGCCGTGGC+CGG 0.459468 4_2:+71286450 Msa0619960:CDS
TTGGTATTCCACGACCCAAT+TGG 0.459870 4_2:+71286680 Msa0619960:CDS
CTCCTTCTCTTGTGTATTTG+GGG 0.462628 4_2:-71287041 None:intergenic
GTTTATAATAAGCTTTGCTT+GGG 0.470461 4_2:+71287222 Msa0619960:three_prime_UTR
AACATTACACAGAAAATTGT+CGG 0.472163 4_2:-71286737 None:intergenic
TCTGGATGATGCCCATTGGC+AGG 0.480962 4_2:+71286983 Msa0619960:CDS
ACTAATGAGTGAGATGAGAT+AGG 0.485469 4_2:+71287115 Msa0619960:CDS
GCAGCTTCTTACAAATATCA+TGG 0.488505 4_2:-71286178 None:intergenic
CTTATTTATAGTAACAAAGA+TGG 0.497250 4_2:-71287292 None:intergenic
AATACTATCCTTAACTTGAT+GGG 0.507432 4_2:+71286210 Msa0619960:five_prime_UTR
AGCCGCTTCTGTTGAGGAGT+AGG 0.512649 4_2:-71286489 None:intergenic
ACTTTGCAAGTGTGCTCGAA+AGG 0.514114 4_2:-71286643 None:intergenic
TTAGCACCATCAAGCCAATT+GGG 0.517591 4_2:-71286694 None:intergenic
AACAAGACTTATGGTACGAT+TGG 0.522229 4_2:+71286521 Msa0619960:CDS
GAGTGGAACTGTTCCGGCCA+CGG 0.525676 4_2:-71286463 None:intergenic
TGGTCGAAGTTGAGAGATGA+AGG 0.525737 4_2:-71286420 None:intergenic
ATTGCTTTGCTGATTTCGGA+AGG 0.543100 4_2:-71286346 None:intergenic
GAAGAGAGCCGCTTCTGTTG+AGG 0.544198 4_2:-71286495 None:intergenic
TACTGATGTGATGACATTTG+AGG 0.549841 4_2:+71286950 Msa0619960:CDS
AATGCATTCTTCTGTGGCAG+AGG 0.552048 4_2:-71286371 None:intergenic
AATAGACAGGAGCCTGCCAA+TGG 0.552630 4_2:-71286995 None:intergenic
TTATGGTACGATTGGCCCAA+TGG 0.556501 4_2:+71286529 Msa0619960:CDS
CTTTGCAAGTGTGCTCGAAA+GGG 0.564893 4_2:-71286642 None:intergenic
AAGTTGAGAGATGAAGGAAG+AGG 0.569210 4_2:-71286414 None:intergenic
CCATCAAGCCAATTGGGTCG+TGG 0.576651 4_2:-71286688 None:intergenic
ATAGACAGGAGCCTGCCAAT+GGG 0.577912 4_2:-71286994 None:intergenic
GTCCTACTCCTCAACAGAAG+CGG 0.579821 4_2:+71286487 Msa0619960:CDS
AACCCCAAATACACAAGAGA+AGG 0.582352 4_2:+71287039 Msa0619960:CDS
TCGTAGAAGATCCACTTGAC+AGG 0.590706 4_2:-71286811 None:intergenic
TCACTAAAAGACCTGTCAAG+TGG 0.590795 4_2:+71286800 Msa0619960:CDS
TATGACCTTGAATGGAACAA+TGG 0.591932 4_2:+71286595 Msa0619960:CDS
TTCCGAAATCAGCAAAGCAA+TGG 0.592636 4_2:+71286348 Msa0619960:exon
CAGTTCTGGATGATGCCCAT+TGG 0.593169 4_2:+71286979 Msa0619960:CDS
CTTAACTTGATGGGAAGTAA+CGG 0.594348 4_2:+71286219 Msa0619960:five_prime_UTR
GCCTTACTAAAACAATAGAC+AGG 0.594404 4_2:-71287008 None:intergenic
CATATTTGAGAACATCAAGC+TGG 0.600302 4_2:-71286576 None:intergenic
AGGGTCGAGAGTGTAGAGAA+AGG 0.604953 4_2:-71286623 None:intergenic
CAAACAAATGCATTCTTCTG+TGG 0.604964 4_2:-71286377 None:intergenic
ATGATATTTGTAAGAAGCTG+CGG 0.605669 4_2:+71286180 Msa0619960:five_prime_UTR
CGCCGGAATTGGGTCCTCTG+TGG 0.626171 4_2:-71286440 None:intergenic
GATGTGATGACATTTGAGGT+TGG 0.629445 4_2:+71286954 Msa0619960:CDS
GTCAAGTGGATCTTCTACGA+TGG 0.629602 4_2:+71286814 Msa0619960:CDS
AGGACCCAATTCCGGCGCCG+TGG 0.635409 4_2:+71286446 Msa0619960:CDS
AATCATATGATATTGTTGGG+TGG 0.638483 4_2:-71287138 None:intergenic
AAAGTGACTCAATATGATGT+TGG 0.647948 4_2:+71286661 Msa0619960:CDS
AATATCATGGATCTTCACTT+CGG 0.648146 4_2:-71286165 None:intergenic
TGTTGAGGAGTAGGACTGAG+TGG 0.648618 4_2:-71286480 None:intergenic
GTCGAGAGTGTAGAGAAAGG+TGG 0.677328 4_2:-71286620 None:intergenic
CAGTATCAGTATGAACGACG+TGG 0.680246 4_2:-71286310 None:intergenic
TCTCTCAACTTCGACCACAG+AGG 0.720290 4_2:+71286426 Msa0619960:CDS
CTTATTATAAACCAGCACCG+AGG 0.764812 4_2:-71287211 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATAATAATCTTTGTTT+TGG + chr4_2:71287183-71287202 Msa0619960:three_prime_UTR 10.0%
!!! ATAATAATAATCTTTGTTTT+GGG + chr4_2:71287184-71287203 Msa0619960:three_prime_UTR 10.0%
!!! TATAATAATAATCTTTGTTT+TGG + chr4_2:71287183-71287202 Msa0619960:three_prime_UTR 10.0%
!!! ATAATAATAATCTTTGTTTT+GGG + chr4_2:71287184-71287203 Msa0619960:three_prime_UTR 10.0%
!! TAAATTCATTATATGATGAT+TGG + chr4_2:71286911-71286930 Msa0619960:intron 15.0%
!! ATAAATCATATGATATTGTT+GGG - chr4_2:71287144-71287163 None:intergenic 15.0%
!! TATAAATCATATGATATTGT+TGG - chr4_2:71287145-71287164 None:intergenic 15.0%
!!! TAATAATAATCTTTGTTTTG+GGG + chr4_2:71287185-71287204 Msa0619960:three_prime_UTR 15.0%
!! TAAATTCATTATATGATGAT+TGG + chr4_2:71286911-71286930 Msa0619960:intron 15.0%
!! ATAAATCATATGATATTGTT+GGG - chr4_2:71287144-71287163 None:intergenic 15.0%
!! TATAAATCATATGATATTGT+TGG - chr4_2:71287145-71287164 None:intergenic 15.0%
!!! TAATAATAATCTTTGTTTTG+GGG + chr4_2:71287185-71287204 Msa0619960:three_prime_UTR 15.0%
!! AAATACTATCCTTAACTTGA+TGG + chr4_2:71286209-71286228 Msa0619960:five_prime_UTR 25.0%
!! AATACTATCCTTAACTTGAT+GGG + chr4_2:71286210-71286229 Msa0619960:five_prime_UTR 25.0%
! AACATTACACAGAAAATTGT+CGG - chr4_2:71286740-71286759 None:intergenic 25.0%
!! ACAATTTTCTGTGTAATGTT+TGG + chr4_2:71286740-71286759 Msa0619960:CDS 25.0%
!! CAATTTTCTGTGTAATGTTT+GGG + chr4_2:71286741-71286760 Msa0619960:CDS 25.0%
! CTACATATAGCTAAAATTAC+TGG + chr4_2:71286865-71286884 Msa0619960:intron 25.0%
! GTTTATAATAAGCTTTGCTT+GGG + chr4_2:71287222-71287241 Msa0619960:three_prime_UTR 25.0%
!! AAATACTATCCTTAACTTGA+TGG + chr4_2:71286209-71286228 Msa0619960:five_prime_UTR 25.0%
!! AATACTATCCTTAACTTGAT+GGG + chr4_2:71286210-71286229 Msa0619960:five_prime_UTR 25.0%
! AACATTACACAGAAAATTGT+CGG - chr4_2:71286740-71286759 None:intergenic 25.0%
!! ACAATTTTCTGTGTAATGTT+TGG + chr4_2:71286740-71286759 Msa0619960:CDS 25.0%
!! CAATTTTCTGTGTAATGTTT+GGG + chr4_2:71286741-71286760 Msa0619960:CDS 25.0%
! CTACATATAGCTAAAATTAC+TGG + chr4_2:71286865-71286884 Msa0619960:intron 25.0%
! GTTTATAATAAGCTTTGCTT+GGG + chr4_2:71287222-71287241 Msa0619960:three_prime_UTR 25.0%
AATATCATGGATCTTCACTT+CGG - chr4_2:71286168-71286187 None:intergenic 30.0%
ATGATATTTGTAAGAAGCTG+CGG + chr4_2:71286180-71286199 Msa0619960:five_prime_UTR 30.0%
!! TGTTTCTCAACCTTTAGTTT+TGG - chr4_2:71286260-71286279 None:intergenic 30.0%
ATGTTGAAATTTCGTCCATT+GGG - chr4_2:71286547-71286566 None:intergenic 30.0%
AATGTTGAAATTTCGTCCAT+TGG - chr4_2:71286548-71286567 None:intergenic 30.0%
TTCTCAAATATGACCTTGAA+TGG + chr4_2:71286587-71286606 Msa0619960:CDS 30.0%
AAAGTGACTCAATATGATGT+TGG + chr4_2:71286661-71286680 Msa0619960:CDS 30.0%
!! CTTGATGGTGCTAATTATTT+GGG + chr4_2:71286703-71286722 Msa0619960:CDS 30.0%
!!! TCCTGTCTATTGTTTTAGTA+AGG + chr4_2:71287007-71287026 Msa0619960:CDS 30.0%
!!! CTATTGTTGATGATTTTCGT+TGG + chr4_2:71287090-71287109 Msa0619960:CDS 30.0%
AATCATATGATATTGTTGGG+TGG - chr4_2:71287141-71287160 None:intergenic 30.0%
!!! TAATAATCTTTGTTTTGGGG+AGG + chr4_2:71287188-71287207 Msa0619960:three_prime_UTR 30.0%
GGTTTATAATAAGCTTTGCT+TGG + chr4_2:71287221-71287240 Msa0619960:three_prime_UTR 30.0%
AATATCATGGATCTTCACTT+CGG - chr4_2:71286168-71286187 None:intergenic 30.0%
ATGATATTTGTAAGAAGCTG+CGG + chr4_2:71286180-71286199 Msa0619960:five_prime_UTR 30.0%
!! TGTTTCTCAACCTTTAGTTT+TGG - chr4_2:71286260-71286279 None:intergenic 30.0%
ATGTTGAAATTTCGTCCATT+GGG - chr4_2:71286547-71286566 None:intergenic 30.0%
AATGTTGAAATTTCGTCCAT+TGG - chr4_2:71286548-71286567 None:intergenic 30.0%
TTCTCAAATATGACCTTGAA+TGG + chr4_2:71286587-71286606 Msa0619960:CDS 30.0%
AAAGTGACTCAATATGATGT+TGG + chr4_2:71286661-71286680 Msa0619960:CDS 30.0%
!! CTTGATGGTGCTAATTATTT+GGG + chr4_2:71286703-71286722 Msa0619960:CDS 30.0%
!!! TCCTGTCTATTGTTTTAGTA+AGG + chr4_2:71287007-71287026 Msa0619960:CDS 30.0%
!!! CTATTGTTGATGATTTTCGT+TGG + chr4_2:71287090-71287109 Msa0619960:CDS 30.0%
AATCATATGATATTGTTGGG+TGG - chr4_2:71287141-71287160 None:intergenic 30.0%
!!! TAATAATCTTTGTTTTGGGG+AGG + chr4_2:71287188-71287207 Msa0619960:three_prime_UTR 30.0%
GGTTTATAATAAGCTTTGCT+TGG + chr4_2:71287221-71287240 Msa0619960:three_prime_UTR 30.0%
GCAGCTTCTTACAAATATCA+TGG - chr4_2:71286181-71286200 None:intergenic 35.0%
! CTTAACTTGATGGGAAGTAA+CGG + chr4_2:71286219-71286238 Msa0619960:five_prime_UTR 35.0%
CAAACAAATGCATTCTTCTG+TGG - chr4_2:71286380-71286399 None:intergenic 35.0%
CTCTTCGAAAACAAGACTTA+TGG + chr4_2:71286512-71286531 Msa0619960:CDS 35.0%
AACAAGACTTATGGTACGAT+TGG + chr4_2:71286521-71286540 Msa0619960:CDS 35.0%
CATATTTGAGAACATCAAGC+TGG - chr4_2:71286579-71286598 None:intergenic 35.0%
TATGACCTTGAATGGAACAA+TGG + chr4_2:71286595-71286614 Msa0619960:CDS 35.0%
!! GCTTGATGGTGCTAATTATT+TGG + chr4_2:71286702-71286721 Msa0619960:CDS 35.0%
GGGAGAAAGTCGAATTTATT+TGG + chr4_2:71286761-71286780 Msa0619960:CDS 35.0%
TACTGATGTGATGACATTTG+AGG + chr4_2:71286950-71286969 Msa0619960:CDS 35.0%
GCCTTACTAAAACAATAGAC+AGG - chr4_2:71287011-71287030 None:intergenic 35.0%
!!! CTATTGTTTTAGTAAGGCTG+AGG + chr4_2:71287013-71287032 Msa0619960:CDS 35.0%
ACTAATGAGTGAGATGAGAT+AGG + chr4_2:71287115-71287134 Msa0619960:CDS 35.0%
GCAGCTTCTTACAAATATCA+TGG - chr4_2:71286181-71286200 None:intergenic 35.0%
! CTTAACTTGATGGGAAGTAA+CGG + chr4_2:71286219-71286238 Msa0619960:five_prime_UTR 35.0%
CAAACAAATGCATTCTTCTG+TGG - chr4_2:71286380-71286399 None:intergenic 35.0%
CTCTTCGAAAACAAGACTTA+TGG + chr4_2:71286512-71286531 Msa0619960:CDS 35.0%
AACAAGACTTATGGTACGAT+TGG + chr4_2:71286521-71286540 Msa0619960:CDS 35.0%
CATATTTGAGAACATCAAGC+TGG - chr4_2:71286579-71286598 None:intergenic 35.0%
TATGACCTTGAATGGAACAA+TGG + chr4_2:71286595-71286614 Msa0619960:CDS 35.0%
!! GCTTGATGGTGCTAATTATT+TGG + chr4_2:71286702-71286721 Msa0619960:CDS 35.0%
GGGAGAAAGTCGAATTTATT+TGG + chr4_2:71286761-71286780 Msa0619960:CDS 35.0%
TACTGATGTGATGACATTTG+AGG + chr4_2:71286950-71286969 Msa0619960:CDS 35.0%
GCCTTACTAAAACAATAGAC+AGG - chr4_2:71287011-71287030 None:intergenic 35.0%
!!! CTATTGTTTTAGTAAGGCTG+AGG + chr4_2:71287013-71287032 Msa0619960:CDS 35.0%
ACTAATGAGTGAGATGAGAT+AGG + chr4_2:71287115-71287134 Msa0619960:CDS 35.0%
CGTTACTTCCCATCAAGTTA+AGG - chr4_2:71286221-71286240 None:intergenic 40.0%
ATTCACCCAGCCAAAACTAA+AGG + chr4_2:71286247-71286266 Msa0619960:five_prime_UTR 40.0%
!!! CTCAACCTTTAGTTTTGGCT+GGG - chr4_2:71286255-71286274 None:intergenic 40.0%
!!! TCTCAACCTTTAGTTTTGGC+TGG - chr4_2:71286256-71286275 None:intergenic 40.0%
!! ATTGCTTTGCTGATTTCGGA+AGG - chr4_2:71286349-71286368 None:intergenic 40.0%
TTCCGAAATCAGCAAAGCAA+TGG + chr4_2:71286348-71286367 Msa0619960:exon 40.0%
AAGTTGAGAGATGAAGGAAG+AGG - chr4_2:71286417-71286436 None:intergenic 40.0%
TGAGAACATCAAGCTGGTAT+TGG - chr4_2:71286573-71286592 None:intergenic 40.0%
TTAGCACCATCAAGCCAATT+GGG - chr4_2:71286697-71286716 None:intergenic 40.0%
ATTAGCACCATCAAGCCAAT+TGG - chr4_2:71286698-71286717 None:intergenic 40.0%
TCACTAAAAGACCTGTCAAG+TGG + chr4_2:71286800-71286819 Msa0619960:CDS 40.0%
ATATGATGATTGGTGAGTGC+AGG + chr4_2:71286921-71286940 Msa0619960:intron 40.0%
! GATGTGATGACATTTGAGGT+TGG + chr4_2:71286954-71286973 Msa0619960:CDS 40.0%
AACCCCAAATACACAAGAGA+AGG + chr4_2:71287039-71287058 Msa0619960:CDS 40.0%
CTCCTTCTCTTGTGTATTTG+GGG - chr4_2:71287044-71287063 None:intergenic 40.0%
GCTCCTTCTCTTGTGTATTT+GGG - chr4_2:71287045-71287064 None:intergenic 40.0%
TGCTCCTTCTCTTGTGTATT+TGG - chr4_2:71287046-71287065 None:intergenic 40.0%
CTTATTATAAACCAGCACCG+AGG - chr4_2:71287214-71287233 None:intergenic 40.0%
CGTTACTTCCCATCAAGTTA+AGG - chr4_2:71286221-71286240 None:intergenic 40.0%
ATTCACCCAGCCAAAACTAA+AGG + chr4_2:71286247-71286266 Msa0619960:five_prime_UTR 40.0%
!!! CTCAACCTTTAGTTTTGGCT+GGG - chr4_2:71286255-71286274 None:intergenic 40.0%
!!! TCTCAACCTTTAGTTTTGGC+TGG - chr4_2:71286256-71286275 None:intergenic 40.0%
!! ATTGCTTTGCTGATTTCGGA+AGG - chr4_2:71286349-71286368 None:intergenic 40.0%
TTCCGAAATCAGCAAAGCAA+TGG + chr4_2:71286348-71286367 Msa0619960:exon 40.0%
AAGTTGAGAGATGAAGGAAG+AGG - chr4_2:71286417-71286436 None:intergenic 40.0%
TGAGAACATCAAGCTGGTAT+TGG - chr4_2:71286573-71286592 None:intergenic 40.0%
TTAGCACCATCAAGCCAATT+GGG - chr4_2:71286697-71286716 None:intergenic 40.0%
ATTAGCACCATCAAGCCAAT+TGG - chr4_2:71286698-71286717 None:intergenic 40.0%
TCACTAAAAGACCTGTCAAG+TGG + chr4_2:71286800-71286819 Msa0619960:CDS 40.0%
ATATGATGATTGGTGAGTGC+AGG + chr4_2:71286921-71286940 Msa0619960:intron 40.0%
! GATGTGATGACATTTGAGGT+TGG + chr4_2:71286954-71286973 Msa0619960:CDS 40.0%
AACCCCAAATACACAAGAGA+AGG + chr4_2:71287039-71287058 Msa0619960:CDS 40.0%
CTCCTTCTCTTGTGTATTTG+GGG - chr4_2:71287044-71287063 None:intergenic 40.0%
GCTCCTTCTCTTGTGTATTT+GGG - chr4_2:71287045-71287064 None:intergenic 40.0%
TGCTCCTTCTCTTGTGTATT+TGG - chr4_2:71287046-71287065 None:intergenic 40.0%
CTTATTATAAACCAGCACCG+AGG - chr4_2:71287214-71287233 None:intergenic 40.0%
CAGTATGAACGACGTGGATA+AGG - chr4_2:71286307-71286326 None:intergenic 45.0%
CAGTATCAGTATGAACGACG+TGG - chr4_2:71286313-71286332 None:intergenic 45.0%
!! GGCCATTGCTTTGCTGATTT+CGG - chr4_2:71286353-71286372 None:intergenic 45.0%
AATGCATTCTTCTGTGGCAG+AGG - chr4_2:71286374-71286393 None:intergenic 45.0%
TGGTCGAAGTTGAGAGATGA+AGG - chr4_2:71286423-71286442 None:intergenic 45.0%
! TTATGGTACGATTGGCCCAA+TGG + chr4_2:71286529-71286548 Msa0619960:CDS 45.0%
!! TGGTGCCATTGTTCCATTCA+AGG - chr4_2:71286603-71286622 None:intergenic 45.0%
CTTTGCAAGTGTGCTCGAAA+GGG - chr4_2:71286645-71286664 None:intergenic 45.0%
ACTTTGCAAGTGTGCTCGAA+AGG - chr4_2:71286646-71286665 None:intergenic 45.0%
TTGGTATTCCACGACCCAAT+TGG + chr4_2:71286680-71286699 Msa0619960:CDS 45.0%
TCGTAGAAGATCCACTTGAC+AGG - chr4_2:71286814-71286833 None:intergenic 45.0%
GTCAAGTGGATCTTCTACGA+TGG + chr4_2:71286814-71286833 Msa0619960:CDS 45.0%
! ATTTGAGGTTGGAGCAGTTC+TGG + chr4_2:71286965-71286984 Msa0619960:CDS 45.0%
AAGCTTTGCTTGGGCATCAA+TGG + chr4_2:71287231-71287250 Msa0619960:three_prime_UTR 45.0%
CAGTATGAACGACGTGGATA+AGG - chr4_2:71286307-71286326 None:intergenic 45.0%
CAGTATCAGTATGAACGACG+TGG - chr4_2:71286313-71286332 None:intergenic 45.0%
!! GGCCATTGCTTTGCTGATTT+CGG - chr4_2:71286353-71286372 None:intergenic 45.0%
AATGCATTCTTCTGTGGCAG+AGG - chr4_2:71286374-71286393 None:intergenic 45.0%
TGGTCGAAGTTGAGAGATGA+AGG - chr4_2:71286423-71286442 None:intergenic 45.0%
! TTATGGTACGATTGGCCCAA+TGG + chr4_2:71286529-71286548 Msa0619960:CDS 45.0%
!! TGGTGCCATTGTTCCATTCA+AGG - chr4_2:71286603-71286622 None:intergenic 45.0%
CTTTGCAAGTGTGCTCGAAA+GGG - chr4_2:71286645-71286664 None:intergenic 45.0%
ACTTTGCAAGTGTGCTCGAA+AGG - chr4_2:71286646-71286665 None:intergenic 45.0%
TTGGTATTCCACGACCCAAT+TGG + chr4_2:71286680-71286699 Msa0619960:CDS 45.0%
TCGTAGAAGATCCACTTGAC+AGG - chr4_2:71286814-71286833 None:intergenic 45.0%
GTCAAGTGGATCTTCTACGA+TGG + chr4_2:71286814-71286833 Msa0619960:CDS 45.0%
! ATTTGAGGTTGGAGCAGTTC+TGG + chr4_2:71286965-71286984 Msa0619960:CDS 45.0%
AAGCTTTGCTTGGGCATCAA+TGG + chr4_2:71287231-71287250 Msa0619960:three_prime_UTR 45.0%
TCTCTCAACTTCGACCACAG+AGG + chr4_2:71286426-71286445 Msa0619960:CDS 50.0%
AGGACTGAGTGGAACTGTTC+CGG - chr4_2:71286472-71286491 None:intergenic 50.0%
TGTTGAGGAGTAGGACTGAG+TGG - chr4_2:71286483-71286502 None:intergenic 50.0%
GTCCTACTCCTCAACAGAAG+CGG + chr4_2:71286487-71286506 Msa0619960:CDS 50.0%
! GTCGAGAGTGTAGAGAAAGG+TGG - chr4_2:71286623-71286642 None:intergenic 50.0%
! AGGGTCGAGAGTGTAGAGAA+AGG - chr4_2:71286626-71286645 None:intergenic 50.0%
!! CAGTTCTGGATGATGCCCAT+TGG + chr4_2:71286979-71286998 Msa0619960:CDS 50.0%
ATAGACAGGAGCCTGCCAAT+GGG - chr4_2:71286997-71287016 None:intergenic 50.0%
AATAGACAGGAGCCTGCCAA+TGG - chr4_2:71286998-71287017 None:intergenic 50.0%
!!! TCTTTGTTTTGGGGAGGCCT+CGG + chr4_2:71287194-71287213 Msa0619960:three_prime_UTR 50.0%
TCTCTCAACTTCGACCACAG+AGG + chr4_2:71286426-71286445 Msa0619960:CDS 50.0%
AGGACTGAGTGGAACTGTTC+CGG - chr4_2:71286472-71286491 None:intergenic 50.0%
TGTTGAGGAGTAGGACTGAG+TGG - chr4_2:71286483-71286502 None:intergenic 50.0%
GTCCTACTCCTCAACAGAAG+CGG + chr4_2:71286487-71286506 Msa0619960:CDS 50.0%
! GTCGAGAGTGTAGAGAAAGG+TGG - chr4_2:71286623-71286642 None:intergenic 50.0%
! AGGGTCGAGAGTGTAGAGAA+AGG - chr4_2:71286626-71286645 None:intergenic 50.0%
!! CAGTTCTGGATGATGCCCAT+TGG + chr4_2:71286979-71286998 Msa0619960:CDS 50.0%
ATAGACAGGAGCCTGCCAAT+GGG - chr4_2:71286997-71287016 None:intergenic 50.0%
AATAGACAGGAGCCTGCCAA+TGG - chr4_2:71286998-71287017 None:intergenic 50.0%
!!! TCTTTGTTTTGGGGAGGCCT+CGG + chr4_2:71287194-71287213 Msa0619960:three_prime_UTR 50.0%
GACCACAGAGGACCCAATTC+CGG + chr4_2:71286438-71286457 Msa0619960:CDS 55.0%
AGCCGCTTCTGTTGAGGAGT+AGG - chr4_2:71286492-71286511 None:intergenic 55.0%
GAAGAGAGCCGCTTCTGTTG+AGG - chr4_2:71286498-71286517 None:intergenic 55.0%
CCATCAAGCCAATTGGGTCG+TGG - chr4_2:71286691-71286710 None:intergenic 55.0%
!! CCACGACCCAATTGGCTTGA+TGG + chr4_2:71286688-71286707 Msa0619960:CDS 55.0%
TCTGGATGATGCCCATTGGC+AGG + chr4_2:71286983-71287002 Msa0619960:CDS 55.0%
GACCACAGAGGACCCAATTC+CGG + chr4_2:71286438-71286457 Msa0619960:CDS 55.0%
AGCCGCTTCTGTTGAGGAGT+AGG - chr4_2:71286492-71286511 None:intergenic 55.0%
GAAGAGAGCCGCTTCTGTTG+AGG - chr4_2:71286498-71286517 None:intergenic 55.0%
CCATCAAGCCAATTGGGTCG+TGG - chr4_2:71286691-71286710 None:intergenic 55.0%
!! CCACGACCCAATTGGCTTGA+TGG + chr4_2:71286688-71286707 Msa0619960:CDS 55.0%
TCTGGATGATGCCCATTGGC+AGG + chr4_2:71286983-71287002 Msa0619960:CDS 55.0%
GAGTGGAACTGTTCCGGCCA+CGG - chr4_2:71286466-71286485 None:intergenic 60.0%
GAGTGGAACTGTTCCGGCCA+CGG - chr4_2:71286466-71286485 None:intergenic 60.0%
CGCCGGAATTGGGTCCTCTG+TGG - chr4_2:71286443-71286462 None:intergenic 65.0%
!! TTTTGGGGAGGCCTCGGTGC+TGG + chr4_2:71287200-71287219 Msa0619960:three_prime_UTR 65.0%
CGCCGGAATTGGGTCCTCTG+TGG - chr4_2:71286443-71286462 None:intergenic 65.0%
!! TTTTGGGGAGGCCTCGGTGC+TGG + chr4_2:71287200-71287219 Msa0619960:three_prime_UTR 65.0%
AGGACCCAATTCCGGCGCCG+TGG + chr4_2:71286446-71286465 Msa0619960:CDS 70.0%
AACTGTTCCGGCCACGGCGC+CGG - chr4_2:71286460-71286479 None:intergenic 70.0%
AGGACCCAATTCCGGCGCCG+TGG + chr4_2:71286446-71286465 Msa0619960:CDS 70.0%
AACTGTTCCGGCCACGGCGC+CGG - chr4_2:71286460-71286479 None:intergenic 70.0%
! CCGGCCACGGCGCCGGAATT+GGG - chr4_2:71286453-71286472 None:intergenic 75.0%
CCCAATTCCGGCGCCGTGGC+CGG + chr4_2:71286450-71286469 Msa0619960:CDS 75.0%
! TCCGGCCACGGCGCCGGAAT+TGG - chr4_2:71286454-71286473 None:intergenic 75.0%
! CCGGCCACGGCGCCGGAATT+GGG - chr4_2:71286453-71286472 None:intergenic 75.0%
CCCAATTCCGGCGCCGTGGC+CGG + chr4_2:71286450-71286469 Msa0619960:CDS 75.0%
! TCCGGCCACGGCGCCGGAAT+TGG - chr4_2:71286454-71286473 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 71286142 71287311 71286142 ID=Msa0619960;Name=Msa0619960
chr4_2 mRNA 71286142 71287311 71286142 ID=Msa0619960-mRNA-1;Parent=Msa0619960;Name=Msa0619960-mRNA-1;_AED=0.20;_eAED=0.20;_QI=225|1|1|1|1|1|2|175|220
chr4_2 exon 71286142 71286835 71286142 ID=Msa0619960-mRNA-1:exon:21064;Parent=Msa0619960-mRNA-1
chr4_2 exon 71286943 71287311 71286943 ID=Msa0619960-mRNA-1:exon:21065;Parent=Msa0619960-mRNA-1
chr4_2 five_prime_UTR 71286142 71286366 71286142 ID=Msa0619960-mRNA-1:five_prime_utr;Parent=Msa0619960-mRNA-1
chr4_2 CDS 71286367 71286835 71286367 ID=Msa0619960-mRNA-1:cds;Parent=Msa0619960-mRNA-1
chr4_2 CDS 71286943 71287136 71286943 ID=Msa0619960-mRNA-1:cds;Parent=Msa0619960-mRNA-1
chr4_2 three_prime_UTR 71287137 71287311 71287137 ID=Msa0619960-mRNA-1:three_prime_utr;Parent=Msa0619960-mRNA-1
Gene Sequence

>Msa0619960

ATGGCCTCTGCCACAGAAGAATGCATTTGTTTGTTTTTGTGTCTCTTCCTCTTCCTTCATCTCTCAACTTCGACCACAGAGGACCCAATTCCGGCGCCGTGGCCGGAACAGTTCCACTCAGTCCTACTCCTCAACAGAAGCGGCTCTCTTCGAAAACAAGACTTATGGTACGATTGGCCCAATGGACGAAATTTCAACATTATCCAATACCAGCTTGATGTTCTCAAATATGACCTTGAATGGAACAATGGCACCACCTTTCTCTACACTCTCGACCCTTTCGAGCACACTTGCAAAGTGACTCAATATGATGTTGGTATTCCACGACCCAATTGGCTTGATGGTGCTAATTATTTGGGTCAACAATATGCCGACAATTTTCTGTGTAATGTTTGGGAGAAAGTCGAATTTATTTGGTACTTTGAAGATGTTCTCACTAAAAGACCTGTCAAGTGGATCTTCTACGATGGAATGATTACTGATGTGATGACATTTGAGGTTGGAGCAGTTCTGGATGATGCCCATTGGCAGGCTCCTGTCTATTGTTTTAGTAAGGCTGAGGCTGAACCCCAAATACACAAGAGAAGGAGCAGTTTCTCATTAGATTTAGAAGCTGCTATTGTTGATGATTTTCGTTGGACACTAATGAGTGAGATGAGATAG

Protein sequence

>Msa0619960

MASATEECICLFLCLFLFLHLSTSTTEDPIPAPWPEQFHSVLLLNRSGSLRKQDLWYDWPNGRNFNIIQYQLDVLKYDLEWNNGTTFLYTLDPFEHTCKVTQYDVGIPRPNWLDGANYLGQQYADNFLCNVWEKVEFIWYFEDVLTKRPVKWIFYDGMITDVMTFEVGAVLDDAHWQAPVYCFSKAEAEPQIHKRRSSFSLDLEAAIVDDFRWTLMSEMR*