Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997180 | XP_013452871.1 | 91.525 | 531 | 45 | 0 | 1 | 531 | 1 | 531 | 0.0 | 947 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997180 | sp|Q9M1S9|CDT1B_ARATH | 38.462 | 182 | 98 | 4 | 7 | 186 | 10 | 179 | 3.03e-26 | 115 |
| Msa0997180 | sp|Q9M1S9|CDT1B_ARATH | 42.353 | 85 | 49 | 0 | 438 | 522 | 390 | 474 | 1.50e-12 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997180 | A0A072UAU7 | 91.525 | 531 | 45 | 0 | 1 | 531 | 1 | 531 | 0.0 | 947 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0997180 | Msa1223620 | 0.802212 | 6.244237e-49 | -8.615850e-47 |
| Msa0997180 | Msa1338810 | -0.806242 | 9.048322e-50 | -8.615850e-47 |
| Msa0238960 | Msa0997180 | -0.824258 | 8.900034e-54 | -8.615850e-47 |
| Msa0276800 | Msa0997180 | -0.811162 | 8.034904e-51 | -8.615850e-47 |
| Msa0316720 | Msa0997180 | -0.822641 | 2.124885e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997180 | MtrunA17_Chr6g0482501 | 91.525 | 531 | 45 | 0 | 1 | 531 | 1 | 531 | 0.0 | 947 |
| Msa0997180 | MtrunA17_Chr6g0482391 | 82.550 | 149 | 12 | 1 | 130 | 278 | 1 | 135 | 1.31e-79 | 245 |
| Msa0997180 | MtrunA17_Chr1g0172551 | 82.270 | 141 | 25 | 0 | 311 | 451 | 13 | 153 | 1.29e-75 | 236 |
| Msa0997180 | MtrunA17_Chr6g0482481 | 88.618 | 123 | 12 | 1 | 410 | 530 | 65 | 187 | 8.42e-68 | 216 |
| Msa0997180 | MtrunA17_Chr6g0482481 | 87.500 | 64 | 7 | 1 | 107 | 170 | 1 | 63 | 1.12e-28 | 112 |
| Msa0997180 | MtrunA17_Chr6g0482371 | 60.959 | 146 | 29 | 1 | 386 | 531 | 6 | 123 | 9.80e-48 | 162 |
| Msa0997180 | MtrunA17_Chr1g0184201 | 29.930 | 568 | 284 | 18 | 43 | 522 | 95 | 636 | 5.68e-41 | 156 |
| Msa0997180 | MtrunA17_Chr6g0482341 | 82.927 | 82 | 13 | 1 | 396 | 477 | 11 | 91 | 7.48e-36 | 129 |
| Msa0997180 | MtrunA17_Chr6g0482381 | 83.929 | 56 | 9 | 0 | 355 | 410 | 1 | 56 | 1.56e-24 | 97.1 |
| Msa0997180 | MtrunA17_Chr6g0482441 | 54.737 | 95 | 21 | 3 | 172 | 265 | 1286 | 1359 | 1.15e-16 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997180 | AT3G54710.1 | 38.462 | 182 | 98 | 4 | 7 | 186 | 10 | 179 | 3.08e-27 | 115 |
| Msa0997180 | AT3G54710.1 | 42.353 | 85 | 49 | 0 | 438 | 522 | 390 | 474 | 1.53e-13 | 73.6 |
| Msa0997180 | AT2G31270.1 | 45.161 | 124 | 65 | 2 | 53 | 173 | 110 | 233 | 4.33e-27 | 115 |
| Msa0997180 | AT2G31270.1 | 39.286 | 84 | 51 | 0 | 439 | 522 | 475 | 558 | 5.95e-12 | 68.6 |
Find 102 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAACACGACCCAGAATTT+TGG | 0.148189 | 6_4:+76239029 | None:intergenic |
| TGAAGAACAGATTGAGATTT+TGG | 0.155235 | 6_4:-76237868 | Msa0997180:CDS |
| GGTATTTGAATCTTTGAAAT+TGG | 0.198701 | 6_4:+76241267 | None:intergenic |
| AAAATGACTGCCCAAAATTC+TGG | 0.209383 | 6_4:-76239040 | Msa0997180:CDS |
| CTCTGAACAGTCTGCTGATT+TGG | 0.226738 | 6_4:-76240335 | Msa0997180:CDS |
| TGCAAGAAGTTGGTTTCTTC+TGG | 0.236168 | 6_4:-76237822 | Msa0997180:CDS |
| AATGTGATTGACTCTATATT+TGG | 0.245530 | 6_4:-76238061 | Msa0997180:CDS |
| AAATCAAGTTATAAGGTCTT+TGG | 0.291147 | 6_4:+76239542 | None:intergenic |
| TTGAAATTGGAGGCTAATAA+TGG | 0.291852 | 6_4:+76241280 | None:intergenic |
| CACAGAATGCAGCGATGATT+TGG | 0.310909 | 6_4:-76238975 | Msa0997180:CDS |
| ACTGATTTATCGCATGCTTT+TGG | 0.312165 | 6_4:+76241394 | None:intergenic |
| CAATGTAGATCAACATTGTT+TGG | 0.317145 | 6_4:-76238125 | Msa0997180:CDS |
| AAGTTCTGTTGACAAATTTA+CGG | 0.319211 | 6_4:+76239507 | None:intergenic |
| CAGTGACAGTTCAAGTTCAT+TGG | 0.327277 | 6_4:+76239474 | None:intergenic |
| TCCTTCATCATTGGTGGAAC+TGG | 0.334230 | 6_4:-76238086 | Msa0997180:CDS |
| TTGCAAATATTTAGAAAAGT+TGG | 0.351295 | 6_4:+76241035 | None:intergenic |
| AATGGTTCAGGCTTCTTCTC+TGG | 0.366557 | 6_4:+76241298 | None:intergenic |
| CTGCATTGCTTGGTAATTGT+TGG | 0.367944 | 6_4:-76237311 | Msa0997180:three_prime_UTR |
| AATATCTTGGCTGGCACATA+AGG | 0.368745 | 6_4:-76237243 | Msa0997180:three_prime_UTR |
| TCTACCTATCAACCTCATCT+AGG | 0.369899 | 6_4:-76241559 | Msa0997180:five_prime_UTR |
| AATGTTGCTGATTTGTTTAG+TGG | 0.374557 | 6_4:-76241101 | Msa0997180:CDS |
| TGTCAAGAATGCATCAGATT+TGG | 0.382610 | 6_4:-76237447 | Msa0997180:CDS |
| TTGGAGGCTAATAATGGTTC+AGG | 0.384837 | 6_4:+76241286 | None:intergenic |
| TTATAAGGTCTTTGGCTAAA+GGG | 0.385317 | 6_4:+76239550 | None:intergenic |
| TCTTTGAAAATCAAGTTATA+AGG | 0.386191 | 6_4:+76239535 | None:intergenic |
| TGATTCTGTTTCCCCACCTC+AGG | 0.395030 | 6_4:-76238894 | Msa0997180:CDS |
| GTTATAAGGTCTTTGGCTAA+AGG | 0.417373 | 6_4:+76239549 | None:intergenic |
| ACCAAGGTGATCTTCAAATC+TGG | 0.421228 | 6_4:+76240379 | None:intergenic |
| AACTTCTTGCAAAGCCAGTC+TGG | 0.423623 | 6_4:+76237834 | None:intergenic |
| TTACTCACACAATCAGATAA+TGG | 0.433459 | 6_4:+76239280 | None:intergenic |
| TGGAAAAGACTGTGCCAGAC+TGG | 0.439177 | 6_4:-76237848 | Msa0997180:CDS |
| CTTGAAAATTGTTTCTTGTA+CGG | 0.446562 | 6_4:-76239137 | Msa0997180:CDS |
| TCAGGCTTCTTCTCTGGAGT+GGG | 0.449035 | 6_4:+76241304 | None:intergenic |
| AAATGACTGCCCAAAATTCT+GGG | 0.453422 | 6_4:-76239039 | Msa0997180:CDS |
| GGCTCTGGTAGTGTGGCCTC+TGG | 0.456128 | 6_4:+76239571 | None:intergenic |
| ATTTGAATCTTTGAAATTGG+AGG | 0.469401 | 6_4:+76241270 | None:intergenic |
| ACCAGTTCCACCAATGATGA+AGG | 0.470890 | 6_4:+76238085 | None:intergenic |
| CTCATCTAGGGTTTCAACTC+AGG | 0.471422 | 6_4:-76241546 | Msa0997180:intron |
| ATCCCATGAATCTGACTGGC+TGG | 0.471450 | 6_4:-76239344 | Msa0997180:CDS |
| TATCCAGCCAGTCAGATTCA+TGG | 0.478509 | 6_4:+76239341 | None:intergenic |
| TTCAGGCTTCTTCTCTGGAG+TGG | 0.479425 | 6_4:+76241303 | None:intergenic |
| AGACTGGCTTTGCAAGAAGT+TGG | 0.482751 | 6_4:-76237832 | Msa0997180:CDS |
| AAACCCTAGATGAGGTTGAT+AGG | 0.484357 | 6_4:+76241555 | None:intergenic |
| GGATAACAATCCTTCATCAT+TGG | 0.485163 | 6_4:-76238095 | Msa0997180:CDS |
| ACCAGCTATAGTGAATATCT+TGG | 0.485587 | 6_4:-76237256 | Msa0997180:three_prime_UTR |
| ACATAAGGGATTGTAAGAAT+AGG | 0.488855 | 6_4:-76237228 | Msa0997180:three_prime_UTR |
| AACAACTTCAATCACAAAAG+AGG | 0.492627 | 6_4:-76238029 | Msa0997180:CDS |
| ATTAAAGAAATTAATCAGCC+TGG | 0.494442 | 6_4:+76240291 | None:intergenic |
| GCCAAGATATTCACTATAGC+TGG | 0.499828 | 6_4:+76237255 | None:intergenic |
| CTTCTGGAGACACTATGTAC+TGG | 0.511897 | 6_4:-76237806 | Msa0997180:intron |
| CTCTCAGGTTCTGACTGTGC+AGG | 0.514750 | 6_4:+76239094 | None:intergenic |
| TATGTGGAGAATCTTCTTCT+CGG | 0.515055 | 6_4:+76241348 | None:intergenic |
| TGGTAATGCTCTGCATTGCT+TGG | 0.515907 | 6_4:-76237321 | Msa0997180:three_prime_UTR |
| CAAAGGTATAGAAATTGAAA+AGG | 0.521398 | 6_4:-76240437 | Msa0997180:CDS |
| TCAACATTGTTTGGATGCAT+CGG | 0.523522 | 6_4:-76238116 | Msa0997180:CDS |
| GAACCGAGCAACAATCTCTC+AGG | 0.525201 | 6_4:+76239079 | None:intergenic |
| TTCTGTTTCCCCACCTCAGG+AGG | 0.525456 | 6_4:-76238891 | Msa0997180:intron |
| AGGTTGAAGTTCTTGCTAAG+AGG | 0.528344 | 6_4:-76241010 | Msa0997180:intron |
| GGTCTTTGGCTAAAGGGCTC+TGG | 0.529381 | 6_4:+76239556 | None:intergenic |
| CAATTGATTTATCAACTATG+TGG | 0.533987 | 6_4:+76241332 | None:intergenic |
| CTACCTATCAACCTCATCTA+GGG | 0.536090 | 6_4:-76241558 | Msa0997180:five_prime_UTR |
| ATCCAGCCAGTCAGATTCAT+GGG | 0.537309 | 6_4:+76239342 | None:intergenic |
| GGTGGGGAAACAGAATCAAA+AGG | 0.546782 | 6_4:+76238899 | None:intergenic |
| TAACAATCCTTCATCATTGG+TGG | 0.549598 | 6_4:-76238092 | Msa0997180:CDS |
| GCGTTGTTGCAAATGGTTGT+TGG | 0.549880 | 6_4:-76237341 | Msa0997180:intron |
| GGCGCATACCTCCTGAGGTG+GGG | 0.551455 | 6_4:+76238883 | None:intergenic |
| TGCAGCTAACGGAATGTGGA+GGG | 0.553941 | 6_4:+76239173 | None:intergenic |
| GCTAAAGGGCTCTGGTAGTG+TGG | 0.558163 | 6_4:+76239564 | None:intergenic |
| ATTGCTTGGTAATTGTTGGT+TGG | 0.562992 | 6_4:-76237307 | Msa0997180:three_prime_UTR |
| GCTATAGTGAATATCTTGGC+TGG | 0.565487 | 6_4:-76237252 | Msa0997180:three_prime_UTR |
| AACATTTCGTTGAATACACA+TGG | 0.566948 | 6_4:+76239222 | None:intergenic |
| TGTCATCCCATGAATCTGAC+TGG | 0.570860 | 6_4:-76239348 | Msa0997180:CDS |
| ACGAAATGTTATTAATACAC+CGG | 0.580330 | 6_4:-76239209 | Msa0997180:CDS |
| ATATCTTGGCTGGCACATAA+GGG | 0.581281 | 6_4:-76237242 | Msa0997180:three_prime_UTR |
| TGAGGTTGATAGGTAGACGA+GGG | 0.581844 | 6_4:+76241565 | None:intergenic |
| CAGGCGCATACCTCCTGAGG+TGG | 0.585398 | 6_4:+76238881 | None:intergenic |
| TATAGAAATTGAAAAGGTGG+TGG | 0.586592 | 6_4:-76240431 | Msa0997180:CDS |
| AGGTATAGAAATTGAAAAGG+TGG | 0.588046 | 6_4:-76240434 | Msa0997180:CDS |
| TGTAGAAAGATGCAAGCAGA+AGG | 0.594304 | 6_4:-76239254 | Msa0997180:CDS |
| CTTCTCAGCAATGCGAACAA+AGG | 0.594919 | 6_4:-76237407 | Msa0997180:CDS |
| AGGGCTTTCAATGCAGCTAA+CGG | 0.597116 | 6_4:+76239162 | None:intergenic |
| TTTCTTTAATCTGCATCCTG+AGG | 0.599708 | 6_4:-76240278 | Msa0997180:intron |
| TCAATGCAGCTAACGGAATG+TGG | 0.605431 | 6_4:+76239169 | None:intergenic |
| ATTTGGACTCAGTTCGATCG+AGG | 0.613880 | 6_4:-76237430 | Msa0997180:CDS |
| CTGAGTTGAAACCCTAGATG+AGG | 0.614656 | 6_4:+76241547 | None:intergenic |
| AGGCGCATACCTCCTGAGGT+GGG | 0.617737 | 6_4:+76238882 | None:intergenic |
| ATGCAGGTAGATGAAAACCT+TGG | 0.620376 | 6_4:-76238166 | Msa0997180:intron |
| TCCTCAGAACATCCTCTGCT+AGG | 0.620776 | 6_4:+76238929 | None:intergenic |
| GCCAGATTTGAAGATCACCT+TGG | 0.623620 | 6_4:-76240380 | Msa0997180:CDS |
| ATGAGGTTGATAGGTAGACG+AGG | 0.629262 | 6_4:+76241564 | None:intergenic |
| GCAGCTAACGGAATGTGGAG+GGG | 0.632042 | 6_4:+76239174 | None:intergenic |
| GAACAAAGGAGATGAGTGAA+AGG | 0.634035 | 6_4:-76237393 | Msa0997180:exon |
| ATGCAGCTAACGGAATGTGG+AGG | 0.635448 | 6_4:+76239172 | None:intergenic |
| GGAGGGGAGATCTTATGTAC+CGG | 0.636123 | 6_4:+76239190 | None:intergenic |
| GAACCTGAGAGATTGTTGCT+CGG | 0.639887 | 6_4:-76239082 | Msa0997180:CDS |
| AGCAAGAAAGTGAATGCACA+TGG | 0.647167 | 6_4:-76239318 | Msa0997180:CDS |
| TTCTACAACGTCAAATACCA+AGG | 0.651443 | 6_4:+76240363 | None:intergenic |
| CTCACACAATCAGATAATGG+TGG | 0.655473 | 6_4:+76239283 | None:intergenic |
| TACATGTCTAAACCTAGCAG+AGG | 0.662170 | 6_4:-76238941 | Msa0997180:CDS |
| ATGAAGTATATACTTCCCAA+AGG | 0.662299 | 6_4:-76240454 | Msa0997180:CDS |
| ACCTAGCAGAGGATGTTCTG+AGG | 0.679790 | 6_4:-76238930 | Msa0997180:CDS |
| TCAGGGGATTGATATTCCAG+AGG | 0.708762 | 6_4:-76239587 | Msa0997180:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGTTGAATTAAATTA+GGG | + | chr6_4:76237570-76237589 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTTATGC+AGG | - | chr6_4:76237660-76237679 | Msa0997180:intron | 10.0% |
| !!! | TAAAGATTATTTTAATTAGA+GGG | + | chr6_4:76237820-76237839 | None:intergenic | 10.0% |
| !!! | ATAAAGATTATTTTAATTAG+AGG | + | chr6_4:76237821-76237840 | None:intergenic | 10.0% |
| !! | CTAATTAAAATAATCTTTAT+AGG | - | chr6_4:76237821-76237840 | Msa0997180:CDS | 10.0% |
| !!! | TCTTTTTTTCAAATAATTAT+TGG | + | chr6_4:76237901-76237920 | None:intergenic | 10.0% |
| !! | ATATTTAGTTGAAAATATAT+TGG | - | chr6_4:76238951-76238970 | Msa0997180:CDS | 10.0% |
| !! | GAAAAATGTTGAATTAAATT+AGG | + | chr6_4:76237571-76237590 | None:intergenic | 15.0% |
| !! | ATGTACTAATGATAATAATA+AGG | - | chr6_4:76238919-76238938 | Msa0997180:CDS | 15.0% |
| !!! | TTATGATTTATGAGATTTTT+TGG | - | chr6_4:76239037-76239056 | Msa0997180:CDS | 15.0% |
| !! | TTATAAGATAATGAACATAT+TGG | - | chr6_4:76240149-76240168 | Msa0997180:intron | 15.0% |
| !! | TATAAGATAATGAACATATT+GGG | - | chr6_4:76240150-76240169 | Msa0997180:intron | 15.0% |
| !!! | ATAGTTTAATAGTTTTATAG+TGG | - | chr6_4:76240297-76240316 | Msa0997180:CDS | 15.0% |
| !!! | TGTTAAAGTTTTTTTTTTTG+AGG | - | chr6_4:76240540-76240559 | Msa0997180:intron | 15.0% |
| !!! | GTTAAAGTTTTTTTTTTTGA+GGG | - | chr6_4:76240541-76240560 | Msa0997180:intron | 15.0% |
| !! | TTGCAAATATTTAGAAAAGT+TGG | + | chr6_4:76237758-76237777 | None:intergenic | 20.0% |
| !!! | TTTTCTAAATATTTGCAACA+AGG | - | chr6_4:76237760-76237779 | Msa0997180:intron | 20.0% |
| !! | TCAAATGTAATCATATTTGT+CGG | - | chr6_4:76237926-76237945 | Msa0997180:intron | 20.0% |
| !!! | TTTTCAATTTCTATACCTTT+GGG | + | chr6_4:76238354-76238373 | None:intergenic | 20.0% |
| !!! | AGGTAACATTTTTTGATTTA+GGG | - | chr6_4:76238532-76238551 | Msa0997180:intron | 20.0% |
| !!! | ATTGTATTTTCTGTATTTGA+AGG | - | chr6_4:76238570-76238589 | Msa0997180:intron | 20.0% |
| !!! | TGGATTATTATTTTAGATGT+CGG | - | chr6_4:76238653-76238672 | Msa0997180:intron | 20.0% |
| !!! | TCTTTGAAAATCAAGTTATA+AGG | + | chr6_4:76239258-76239277 | None:intergenic | 20.0% |
| !!! | TATAACTTGATTTTCAAAGA+TGG | - | chr6_4:76239258-76239277 | Msa0997180:CDS | 20.0% |
| !! | AACATGAACTACTAAATATT+AGG | + | chr6_4:76240061-76240080 | None:intergenic | 20.0% |
| !! | TTAAATTCTAACTAGTAAGT+GGG | - | chr6_4:76240079-76240098 | Msa0997180:intron | 20.0% |
| !!! | TCATAATTTTACATATGTCA+TGG | - | chr6_4:76241131-76241150 | Msa0997180:intron | 20.0% |
| !!! | ACTAACCAATTTTTTTTTGA+GGG | + | chr6_4:76241227-76241246 | None:intergenic | 20.0% |
| !! | CAATTGATTTATCAACTATG+TGG | + | chr6_4:76237461-76237480 | None:intergenic | 25.0% |
| !!! | ATTTGAATCTTTGAAATTGG+AGG | + | chr6_4:76237523-76237542 | None:intergenic | 25.0% |
| !!! | GGTATTTGAATCTTTGAAAT+TGG | + | chr6_4:76237526-76237545 | None:intergenic | 25.0% |
| ! | TTGAACTAAATCACATATCA+TGG | + | chr6_4:76238104-76238123 | None:intergenic | 25.0% |
| !! | ATGATATGTGATTTAGTTCA+AGG | - | chr6_4:76238103-76238122 | Msa0997180:CDS | 25.0% |
| !! | CTTTTCAATTTCTATACCTT+TGG | + | chr6_4:76238355-76238374 | None:intergenic | 25.0% |
| !! | CAAAGGTATAGAAATTGAAA+AGG | - | chr6_4:76238353-76238372 | Msa0997180:intron | 25.0% |
| !!! | TGATACGATATTTTAATTCC+AGG | - | chr6_4:76238481-76238500 | Msa0997180:intron | 25.0% |
| ! | ATTAAAGAAATTAATCAGCC+TGG | + | chr6_4:76238502-76238521 | None:intergenic | 25.0% |
| ! | AAATCAAAAAATGTTACCTC+AGG | + | chr6_4:76238531-76238550 | None:intergenic | 25.0% |
| !!! | GAGGTAACATTTTTTGATTT+AGG | - | chr6_4:76238531-76238550 | Msa0997180:intron | 25.0% |
| !!! | GGTAACATTTTTTGATTTAG+GGG | - | chr6_4:76238533-76238552 | Msa0997180:intron | 25.0% |
| ! | CTATCTTAACAGTGATATAT+GGG | - | chr6_4:76238604-76238623 | Msa0997180:intron | 25.0% |
| ! | TAAGATTGGATTTAGAAATG+TGG | + | chr6_4:76238682-76238701 | None:intergenic | 25.0% |
| !!! | GATGTAATACTGTCATTTTT+TGG | - | chr6_4:76238757-76238776 | Msa0997180:intron | 25.0% |
| !!! | ATTTTTTGGTAACATAGTCA+AGG | - | chr6_4:76238771-76238790 | Msa0997180:intron | 25.0% |
| !!! | TTTTTTGGTAACATAGTCAA+GGG | - | chr6_4:76238772-76238791 | Msa0997180:intron | 25.0% |
| !!! | TTTGTTTTTGCTTTTTGTTG+TGG | - | chr6_4:76239177-76239196 | Msa0997180:CDS | 25.0% |
| ! | AAATCAAGTTATAAGGTCTT+TGG | + | chr6_4:76239251-76239270 | None:intergenic | 25.0% |
| ! | AAGTTCTGTTGACAAATTTA+CGG | + | chr6_4:76239286-76239305 | None:intergenic | 25.0% |
| !!! | GAAAAGTGTCTTTTAAAAGA+TGG | + | chr6_4:76239360-76239379 | None:intergenic | 25.0% |
| ! | ACGAAATGTTATTAATACAC+CGG | - | chr6_4:76239581-76239600 | Msa0997180:CDS | 25.0% |
| !!! | AAGAAACAATTTTCAAGTCA+GGG | + | chr6_4:76239650-76239669 | None:intergenic | 25.0% |
| !! | CTTGAAAATTGTTTCTTGTA+CGG | - | chr6_4:76239653-76239672 | Msa0997180:intron | 25.0% |
| !! | AGTAGCAAAGTATGATTTTA+GGG | + | chr6_4:76239967-76239986 | None:intergenic | 25.0% |
| ! | GTTAAATTCTAACTAGTAAG+TGG | - | chr6_4:76240078-76240097 | Msa0997180:intron | 25.0% |
| ! | TAAATTCTAACTAGTAAGTG+GGG | - | chr6_4:76240080-76240099 | Msa0997180:intron | 25.0% |
| ! | TATATTCATGGATGAAAAAG+AGG | - | chr6_4:76240112-76240131 | Msa0997180:intron | 25.0% |
| !!! | TAATAGTTTTATAGTGGAGA+TGG | - | chr6_4:76240303-76240322 | Msa0997180:CDS | 25.0% |
| !! | AATGTGATTGACTCTATATT+TGG | - | chr6_4:76240729-76240748 | Msa0997180:intron | 25.0% |
| ! | TACATATGTCATGGATATAA+TGG | - | chr6_4:76241140-76241159 | Msa0997180:intron | 25.0% |
| !!! | AATAGCAGAACTTTTGTTAT+TGG | - | chr6_4:76241189-76241208 | Msa0997180:intron | 25.0% |
| ! | TGTTTCCCTCAAAAAAAAAT+TGG | - | chr6_4:76241219-76241238 | Msa0997180:intron | 25.0% |
| !!! | CACTAACCAATTTTTTTTTG+AGG | + | chr6_4:76241228-76241247 | None:intergenic | 25.0% |
| ATGAGTGTGAGAATTGAAAT+TGG | + | chr6_4:76237313-76237332 | None:intergenic | 30.0% | |
| TGCAGAAAAAACTGTGAAAA+GGG | + | chr6_4:76237345-76237364 | None:intergenic | 30.0% | |
| ATGCAGAAAAAACTGTGAAA+AGG | + | chr6_4:76237346-76237365 | None:intergenic | 30.0% | |
| ! | TCAATTTTGTTGCTGAAGAA+TGG | - | chr6_4:76237371-76237390 | Msa0997180:intron | 30.0% |
| TTGAAATTGGAGGCTAATAA+TGG | + | chr6_4:76237513-76237532 | None:intergenic | 30.0% | |
| ! | AATTAGGGTTCATACTTTTC+TGG | + | chr6_4:76237555-76237574 | None:intergenic | 30.0% |
| !! | AATGTTGCTGATTTGTTTAG+TGG | - | chr6_4:76237689-76237708 | Msa0997180:intron | 30.0% |
| ACACGATCGATTAGAATTAT+TGG | - | chr6_4:76237958-76237977 | Msa0997180:intron | 30.0% | |
| !! | ATTGGTGCTACAAACTATAA+AGG | - | chr6_4:76237976-76237995 | Msa0997180:intron | 30.0% |
| CCTTAATCAATCAAAGGAAA+TGG | + | chr6_4:76238260-76238279 | None:intergenic | 30.0% | |
| CCATTTCCTTTGATTGATTA+AGG | - | chr6_4:76238257-76238276 | Msa0997180:intron | 30.0% | |
| TCACTTCCTTAATCAATCAA+AGG | + | chr6_4:76238266-76238285 | None:intergenic | 30.0% | |
| ATGAAGTATATACTTCCCAA+AGG | - | chr6_4:76238336-76238355 | Msa0997180:intron | 30.0% | |
| AGGTATAGAAATTGAAAAGG+TGG | - | chr6_4:76238356-76238375 | Msa0997180:intron | 30.0% | |
| TATAGAAATTGAAAAGGTGG+TGG | - | chr6_4:76238359-76238378 | Msa0997180:intron | 30.0% | |
| GCTATCTTAACAGTGATATA+TGG | - | chr6_4:76238603-76238622 | Msa0997180:intron | 30.0% | |
| !! | TTTGACTGTTAGCTTTGATT+TGG | - | chr6_4:76238633-76238652 | Msa0997180:intron | 30.0% |
| CAGTATTACATCCATTACAT+AGG | + | chr6_4:76238749-76238768 | None:intergenic | 30.0% | |
| ATTCAAGATTACTACTGTTG+TGG | - | chr6_4:76238803-76238822 | Msa0997180:intron | 30.0% | |
| !! | CTGTGATTTGTGATTTTAGA+TGG | - | chr6_4:76238862-76238881 | Msa0997180:intron | 30.0% |
| ! | GATTTGTGATTTTAGATGGT+AGG | - | chr6_4:76238866-76238885 | Msa0997180:intron | 30.0% |
| !!! | TTATGAGATTTTTTGGCTAC+TGG | - | chr6_4:76239044-76239063 | Msa0997180:CDS | 30.0% |
| AAAGAAAAGCAGTTGTCAAA+AGG | + | chr6_4:76239079-76239098 | None:intergenic | 30.0% | |
| !! | TTTTGACAACTGCTTTTCTT+TGG | - | chr6_4:76239078-76239097 | Msa0997180:CDS | 30.0% |
| !! | TTTGACAACTGCTTTTCTTT+GGG | - | chr6_4:76239079-76239098 | Msa0997180:CDS | 30.0% |
| TTATAAGGTCTTTGGCTAAA+GGG | + | chr6_4:76239243-76239262 | None:intergenic | 30.0% | |
| TTACTCACACAATCAGATAA+TGG | + | chr6_4:76239513-76239532 | None:intergenic | 30.0% | |
| AACATTTCGTTGAATACACA+TGG | + | chr6_4:76239571-76239590 | None:intergenic | 30.0% | |
| !!! | CAAGAAACAATTTTCAAGTC+AGG | + | chr6_4:76239651-76239670 | None:intergenic | 30.0% |
| ! | TAAAACCAAAACTTGATAGC+AGG | + | chr6_4:76239931-76239950 | None:intergenic | 30.0% |
| ! | GAGTAGCAAAGTATGATTTT+AGG | + | chr6_4:76239968-76239987 | None:intergenic | 30.0% |
| ! | CGATGTTTTACTCTAAATCT+TGG | + | chr6_4:76240188-76240207 | None:intergenic | 30.0% |
| ! | AGATTTAGAGTAAAACATCG+AGG | - | chr6_4:76240188-76240207 | Msa0997180:intron | 30.0% |
| GTTTAGTCGATATCTTAGAT+TGG | - | chr6_4:76240265-76240284 | Msa0997180:intron | 30.0% | |
| TTTGTCGTCAATCTAGAAAA+AGG | + | chr6_4:76240348-76240367 | None:intergenic | 30.0% | |
| TTCTAGATTGACGACAAAAA+AGG | - | chr6_4:76240350-76240369 | Msa0997180:CDS | 30.0% | |
| TCTAGATTGACGACAAAAAA+GGG | - | chr6_4:76240351-76240370 | Msa0997180:CDS | 30.0% | |
| GAATAAACAAGAGATACGAA+TGG | + | chr6_4:76240403-76240422 | None:intergenic | 30.0% | |
| !! | TTTTCTGAAAAGAATGACCA+AGG | + | chr6_4:76240644-76240663 | None:intergenic | 30.0% |
| CAATGTAGATCAACATTGTT+TGG | - | chr6_4:76240665-76240684 | Msa0997180:intron | 30.0% | |
| AACAACTTCAATCACAAAAG+AGG | - | chr6_4:76240761-76240780 | Msa0997180:intron | 30.0% | |
| ! | TGAAGAACAGATTGAGATTT+TGG | - | chr6_4:76240922-76240941 | Msa0997180:intron | 30.0% |
| ! | CTGATACTCTAAAAGAACAA+AGG | + | chr6_4:76241040-76241059 | None:intergenic | 30.0% |
| ATGAAATTTCAGCCTTCTAT+GGG | - | chr6_4:76241098-76241117 | Msa0997180:CDS | 30.0% | |
| ! | GATTTTTAATAGCCCATAGA+AGG | + | chr6_4:76241113-76241132 | None:intergenic | 30.0% |
| AATAGAACTTAGCAGTTTGA+TGG | - | chr6_4:76241166-76241185 | Msa0997180:intron | 30.0% | |
| ACATAAGGGATTGTAAGAAT+AGG | - | chr6_4:76241562-76241581 | Msa0997180:five_prime_UTR | 30.0% | |
| !!! | ATTGTGGTTTTGAGAAAGAG+CGG | + | chr6_4:76237273-76237292 | None:intergenic | 35.0% |
| !! | ACTGATTTATCGCATGCTTT+TGG | + | chr6_4:76237399-76237418 | None:intergenic | 35.0% |
| TATGTGGAGAATCTTCTTCT+CGG | + | chr6_4:76237445-76237464 | None:intergenic | 35.0% | |
| !! | TTCATACTTTTCTGGAAGCT+GGG | + | chr6_4:76237547-76237566 | None:intergenic | 35.0% |
| TAATCATATTTGTCGGACAC+TGG | - | chr6_4:76237933-76237952 | Msa0997180:intron | 35.0% | |
| !! | TTCAAGGTGTTGTCATATAG+AGG | - | chr6_4:76238119-76238138 | Msa0997180:CDS | 35.0% |
| TTCTACAACGTCAAATACCA+AGG | + | chr6_4:76238430-76238449 | None:intergenic | 35.0% | |
| TTTCTTTAATCTGCATCCTG+AGG | - | chr6_4:76238512-76238531 | Msa0997180:intron | 35.0% | |
| TCAAAGCTAACAGTCAAACA+AGG | + | chr6_4:76238631-76238650 | None:intergenic | 35.0% | |
| !! | GTTCTAGAACTCACTAAGAT+TGG | + | chr6_4:76238696-76238715 | None:intergenic | 35.0% |
| !! | AGTGAGTTCTAGAACTTCAT+TGG | - | chr6_4:76238701-76238720 | Msa0997180:intron | 35.0% |
| ATCTGAAGAGTCCTATGTAA+TGG | - | chr6_4:76238735-76238754 | Msa0997180:intron | 35.0% | |
| !! | TGCTTTTTGTTGTGGATATC+AGG | - | chr6_4:76239185-76239204 | Msa0997180:CDS | 35.0% |
| !! | GCTTTTTGTTGTGGATATCA+GGG | - | chr6_4:76239186-76239205 | Msa0997180:CDS | 35.0% |
| !! | CTTTTTGTTGTGGATATCAG+GGG | - | chr6_4:76239187-76239206 | Msa0997180:CDS | 35.0% |
| GTTATAAGGTCTTTGGCTAA+AGG | + | chr6_4:76239244-76239263 | None:intergenic | 35.0% | |
| AAAATGACTGCCCAAAATTC+TGG | - | chr6_4:76239750-76239769 | Msa0997180:intron | 35.0% | |
| AAATGACTGCCCAAAATTCT+GGG | - | chr6_4:76239751-76239770 | Msa0997180:intron | 35.0% | |
| ! | AAAACACGACCCAGAATTTT+GGG | + | chr6_4:76239763-76239782 | None:intergenic | 35.0% |
| ! | TAAAACACGACCCAGAATTT+TGG | + | chr6_4:76239764-76239783 | None:intergenic | 35.0% |
| GGGTACTCATCATATATTCA+TGG | - | chr6_4:76240100-76240119 | Msa0997180:intron | 35.0% | |
| TTAGAGTAAAACATCGAGGA+TGG | - | chr6_4:76240192-76240211 | Msa0997180:intron | 35.0% | |
| TGTTAATCAGATGCAAAGTG+TGG | + | chr6_4:76240497-76240516 | None:intergenic | 35.0% | |
| TCAACATTGTTTGGATGCAT+CGG | - | chr6_4:76240674-76240693 | Msa0997180:intron | 35.0% | |
| GGATAACAATCCTTCATCAT+TGG | - | chr6_4:76240695-76240714 | Msa0997180:intron | 35.0% | |
| TAACAATCCTTCATCATTGG+TGG | - | chr6_4:76240698-76240717 | Msa0997180:intron | 35.0% | |
| ACTAATCTTGTTCTGCCAAT+AGG | - | chr6_4:76240893-76240912 | Msa0997180:intron | 35.0% | |
| CTAATCTTGTTCTGCCAATA+GGG | - | chr6_4:76240894-76240913 | Msa0997180:intron | 35.0% | |
| TAATCTTGTTCTGCCAATAG+GGG | - | chr6_4:76240895-76240914 | Msa0997180:intron | 35.0% | |
| CATGAAATTTCAGCCTTCTA+TGG | - | chr6_4:76241097-76241116 | Msa0997180:CDS | 35.0% | |
| CTTGACACTGCAAATATAAC+AGG | + | chr6_4:76241330-76241349 | None:intergenic | 35.0% | |
| TGTCAAGAATGCATCAGATT+TGG | - | chr6_4:76241343-76241362 | Msa0997180:CDS | 35.0% | |
| ! | AAAGGCTTTTGTTGAACGAT+AGG | - | chr6_4:76241415-76241434 | Msa0997180:exon | 35.0% |
| ! | AAGGCTTTTGTTGAACGATA+GGG | - | chr6_4:76241416-76241435 | Msa0997180:exon | 35.0% |
| GTTATTTGCGTTGTTGCAAA+TGG | - | chr6_4:76241442-76241461 | Msa0997180:intron | 35.0% | |
| ! | ATTGCTTGGTAATTGTTGGT+TGG | - | chr6_4:76241483-76241502 | Msa0997180:intron | 35.0% |
| ! | TGGATTTTTGCACACTGTTT+TGG | - | chr6_4:76241503-76241522 | Msa0997180:intron | 35.0% |
| ACCAGCTATAGTGAATATCT+TGG | - | chr6_4:76241534-76241553 | Msa0997180:intron | 35.0% | |
| TCTACCTATCAACCTCATCT+AGG | - | chr6_4:76237231-76237250 | Msa0997180:three_prime_UTR | 40.0% | |
| CTACCTATCAACCTCATCTA+GGG | - | chr6_4:76237232-76237251 | Msa0997180:three_prime_UTR | 40.0% | |
| ! | AAACCCTAGATGAGGTTGAT+AGG | + | chr6_4:76237238-76237257 | None:intergenic | 40.0% |
| GACGAGATTGAAGGAAATTG+TGG | + | chr6_4:76237289-76237308 | None:intergenic | 40.0% | |
| GAAATTGGAGACGAGATTGA+AGG | + | chr6_4:76237298-76237317 | None:intergenic | 40.0% | |
| TTGGAGGCTAATAATGGTTC+AGG | + | chr6_4:76237507-76237526 | None:intergenic | 40.0% | |
| !! | GTTCATACTTTTCTGGAAGC+TGG | + | chr6_4:76237548-76237567 | None:intergenic | 40.0% |
| AGGTTGAAGTTCTTGCTAAG+AGG | - | chr6_4:76237780-76237799 | Msa0997180:intron | 40.0% | |
| ACCAAGGTGATCTTCAAATC+TGG | + | chr6_4:76238414-76238433 | None:intergenic | 40.0% | |
| CAAGATTACTACTGTTGTGG+TGG | - | chr6_4:76238806-76238825 | Msa0997180:intron | 40.0% | |
| ! | CAGTGACAGTTCAAGTTCAT+TGG | + | chr6_4:76239319-76239338 | None:intergenic | 40.0% |
| AGCAAGAAAGTGAATGCACA+TGG | - | chr6_4:76239472-76239491 | Msa0997180:CDS | 40.0% | |
| ! | CTCACACAATCAGATAATGG+TGG | + | chr6_4:76239510-76239529 | None:intergenic | 40.0% |
| TGTAGAAAGATGCAAGCAGA+AGG | - | chr6_4:76239536-76239555 | Msa0997180:CDS | 40.0% | |
| TACATGTCTAAACCTAGCAG+AGG | - | chr6_4:76239849-76239868 | Msa0997180:intron | 40.0% | |
| TCTGGCAAGGATAGATTGAA+AGG | + | chr6_4:76240011-76240030 | None:intergenic | 40.0% | |
| TACGAATGGAGCAAGAACAT+GGG | + | chr6_4:76240389-76240408 | None:intergenic | 40.0% | |
| ATACGAATGGAGCAAGAACA+TGG | + | chr6_4:76240390-76240409 | None:intergenic | 40.0% | |
| GATGCAAAGTGTGGAAGTAA+GGG | + | chr6_4:76240488-76240507 | None:intergenic | 40.0% | |
| AGATGCAAAGTGTGGAAGTA+AGG | + | chr6_4:76240489-76240508 | None:intergenic | 40.0% | |
| GTAAATTGCTTTCTCGATGC+AGG | - | chr6_4:76240608-76240627 | Msa0997180:intron | 40.0% | |
| ATGCAGGTAGATGAAAACCT+TGG | - | chr6_4:76240624-76240643 | Msa0997180:intron | 40.0% | |
| ! | TGCAAGAAGTTGGTTTCTTC+TGG | - | chr6_4:76240968-76240987 | Msa0997180:intron | 40.0% |
| ! | AAGTCAACACCAGAGGATTT+TGG | + | chr6_4:76241261-76241280 | None:intergenic | 40.0% |
| ! | TAGTTTGAAGTCAACACCAG+AGG | + | chr6_4:76241268-76241287 | None:intergenic | 40.0% |
| GAACAAAGGAGATGAGTGAA+AGG | - | chr6_4:76241397-76241416 | Msa0997180:CDS | 40.0% | |
| ! | CTGCATTGCTTGGTAATTGT+TGG | - | chr6_4:76241479-76241498 | Msa0997180:intron | 40.0% |
| GCCAAGATATTCACTATAGC+TGG | + | chr6_4:76241538-76241557 | None:intergenic | 40.0% | |
| GCTATAGTGAATATCTTGGC+TGG | - | chr6_4:76241538-76241557 | Msa0997180:intron | 40.0% | |
| AATATCTTGGCTGGCACATA+AGG | - | chr6_4:76241547-76241566 | Msa0997180:five_prime_UTR | 40.0% | |
| ATATCTTGGCTGGCACATAA+GGG | - | chr6_4:76241548-76241567 | Msa0997180:five_prime_UTR | 40.0% | |
| !! | TGAGGTTGATAGGTAGACGA+GGG | + | chr6_4:76237228-76237247 | None:intergenic | 45.0% |
| !! | ATGAGGTTGATAGGTAGACG+AGG | + | chr6_4:76237229-76237248 | None:intergenic | 45.0% |
| ! | CTGAGTTGAAACCCTAGATG+AGG | + | chr6_4:76237246-76237265 | None:intergenic | 45.0% |
| ! | CTCATCTAGGGTTTCAACTC+AGG | - | chr6_4:76237244-76237263 | Msa0997180:three_prime_UTR | 45.0% |
| AATGGTTCAGGCTTCTTCTC+TGG | + | chr6_4:76237495-76237514 | None:intergenic | 45.0% | |
| GCCAGATTTGAAGATCACCT+TGG | - | chr6_4:76238410-76238429 | Msa0997180:intron | 45.0% | |
| ! | CTCTGAACAGTCTGCTGATT+TGG | - | chr6_4:76238455-76238474 | Msa0997180:intron | 45.0% |
| CTACTGTTGTGGTGGCATTT+AGG | - | chr6_4:76238814-76238833 | Msa0997180:intron | 45.0% | |
| !! | CAACTGCTTTTCTTTGGGTC+TGG | - | chr6_4:76239084-76239103 | Msa0997180:CDS | 45.0% |
| TCAGGGGATTGATATTCCAG+AGG | - | chr6_4:76239203-76239222 | Msa0997180:CDS | 45.0% | |
| TGTCATCCCATGAATCTGAC+TGG | - | chr6_4:76239442-76239461 | Msa0997180:CDS | 45.0% | |
| ATCCAGCCAGTCAGATTCAT+GGG | + | chr6_4:76239451-76239470 | None:intergenic | 45.0% | |
| TATCCAGCCAGTCAGATTCA+TGG | + | chr6_4:76239452-76239471 | None:intergenic | 45.0% | |
| TCAATGCAGCTAACGGAATG+TGG | + | chr6_4:76239624-76239643 | None:intergenic | 45.0% | |
| AGGGCTTTCAATGCAGCTAA+CGG | + | chr6_4:76239631-76239650 | None:intergenic | 45.0% | |
| GAACCTGAGAGATTGTTGCT+CGG | - | chr6_4:76239708-76239727 | Msa0997180:intron | 45.0% | |
| ! | AAGTCGAGCACTCTTTTTGC+AGG | + | chr6_4:76239789-76239808 | None:intergenic | 45.0% |
| CACAGAATGCAGCGATGATT+TGG | - | chr6_4:76239815-76239834 | Msa0997180:intron | 45.0% | |
| GGTGGGGAAACAGAATCAAA+AGG | + | chr6_4:76239894-76239913 | None:intergenic | 45.0% | |
| ! | ATGCGCCTGCTATCAAGTTT+TGG | - | chr6_4:76239923-76239942 | Msa0997180:intron | 45.0% |
| AGCTTTCTTTGCAAGCTCTC+TGG | + | chr6_4:76240029-76240048 | None:intergenic | 45.0% | |
| TCCTTCATCATTGGTGGAAC+TGG | - | chr6_4:76240704-76240723 | Msa0997180:intron | 45.0% | |
| ACCAGTTCCACCAATGATGA+AGG | + | chr6_4:76240708-76240727 | None:intergenic | 45.0% | |
| TGTTCTTCAGCTTCCCCTAT+TGG | + | chr6_4:76240911-76240930 | None:intergenic | 45.0% | |
| AACTTCTTGCAAAGCCAGTC+TGG | + | chr6_4:76240959-76240978 | None:intergenic | 45.0% | |
| !! | AGACTGGCTTTGCAAGAAGT+TGG | - | chr6_4:76240958-76240977 | Msa0997180:intron | 45.0% |
| ! | CTTCTGGAGACACTATGTAC+TGG | - | chr6_4:76240984-76241003 | Msa0997180:intron | 45.0% |
| ! | TGGAGACACTATGTACTGGT+GGG | - | chr6_4:76240988-76241007 | Msa0997180:intron | 45.0% |
| TGTTGTGAGCCAAAATCCTC+TGG | - | chr6_4:76241249-76241268 | Msa0997180:intron | 45.0% | |
| ATTTGGACTCAGTTCGATCG+AGG | - | chr6_4:76241360-76241379 | Msa0997180:CDS | 45.0% | |
| CTTCTCAGCAATGCGAACAA+AGG | - | chr6_4:76241383-76241402 | Msa0997180:CDS | 45.0% | |
| GCGTTGTTGCAAATGGTTGT+TGG | - | chr6_4:76241449-76241468 | Msa0997180:intron | 45.0% | |
| ! | TGGTAATGCTCTGCATTGCT+TGG | - | chr6_4:76241469-76241488 | Msa0997180:intron | 45.0% |
| !! | AAAAAAAAATCTATAAAAAT+TGG | + | chr6_4:76237593-76237612 | None:intergenic | 5.0% |
| !! | AAAAATTAAAATCAAAATTA+AGG | + | chr6_4:76239159-76239178 | None:intergenic | 5.0% |
| !! | TTTAACAATAAAAAAAATTA+AGG | + | chr6_4:76240527-76240546 | None:intergenic | 5.0% |
| !! | TCAGGCTTCTTCTCTGGAGT+GGG | + | chr6_4:76237489-76237508 | None:intergenic | 50.0% |
| ! | TTCAGGCTTCTTCTCTGGAG+TGG | + | chr6_4:76237490-76237509 | None:intergenic | 50.0% |
| CGTCAACATGTGAGTGTCAG+TGG | + | chr6_4:76237878-76237897 | None:intergenic | 50.0% | |
| ATCCCATGAATCTGACTGGC+TGG | - | chr6_4:76239446-76239465 | Msa0997180:CDS | 50.0% | |
| GGAGGGGAGATCTTATGTAC+CGG | + | chr6_4:76239603-76239622 | None:intergenic | 50.0% | |
| TGCAGCTAACGGAATGTGGA+GGG | + | chr6_4:76239620-76239639 | None:intergenic | 50.0% | |
| ATGCAGCTAACGGAATGTGG+AGG | + | chr6_4:76239621-76239640 | None:intergenic | 50.0% | |
| GAACCGAGCAACAATCTCTC+AGG | + | chr6_4:76239714-76239733 | None:intergenic | 50.0% | |
| ACCTAGCAGAGGATGTTCTG+AGG | - | chr6_4:76239860-76239879 | Msa0997180:intron | 50.0% | |
| TCCTCAGAACATCCTCTGCT+AGG | + | chr6_4:76239864-76239883 | None:intergenic | 50.0% | |
| TGATTCTGTTTCCCCACCTC+AGG | - | chr6_4:76239896-76239915 | Msa0997180:intron | 50.0% | |
| TCTTTGCAAGCTCTCTGGCA+AGG | + | chr6_4:76240024-76240043 | None:intergenic | 50.0% | |
| TGGAAAAGACTGTGCCAGAC+TGG | - | chr6_4:76240942-76240961 | Msa0997180:intron | 50.0% | |
| CTGGAGACACTATGTACTGG+TGG | - | chr6_4:76240987-76241006 | Msa0997180:intron | 50.0% | |
| ! | GCTAAAGGGCTCTGGTAGTG+TGG | + | chr6_4:76239229-76239248 | None:intergenic | 55.0% |
| GGTCTTTGGCTAAAGGGCTC+TGG | + | chr6_4:76239237-76239256 | None:intergenic | 55.0% | |
| GCAGCTAACGGAATGTGGAG+GGG | + | chr6_4:76239619-76239638 | None:intergenic | 55.0% | |
| ! | CTCTCAGGTTCTGACTGTGC+AGG | + | chr6_4:76239699-76239718 | None:intergenic | 55.0% |
| TTCTGTTTCCCCACCTCAGG+AGG | - | chr6_4:76239899-76239918 | Msa0997180:intron | 55.0% | |
| AGGCGCATACCTCCTGAGGT+GGG | + | chr6_4:76239911-76239930 | None:intergenic | 60.0% | |
| TAGCAGGCGCATACCTCCTG+AGG | + | chr6_4:76239915-76239934 | None:intergenic | 60.0% | |
| ! | GGCTCTGGTAGTGTGGCCTC+TGG | + | chr6_4:76239222-76239241 | None:intergenic | 65.0% |
| GGCGCATACCTCCTGAGGTG+GGG | + | chr6_4:76239910-76239929 | None:intergenic | 65.0% | |
| CAGGCGCATACCTCCTGAGG+TGG | + | chr6_4:76239912-76239931 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 76237194 | 76241618 | 76237194 | ID=Msa0997180;Name=Msa0997180 |
| chr6_4 | mRNA | 76237194 | 76241618 | 76237194 | ID=Msa0997180-mRNA-1;Parent=Msa0997180;Name=Msa0997180-mRNA-1;_AED=0.43;_eAED=0.43;_QI=108|1|1|1|0.75|0.55|9|181|531 |
| chr6_4 | exon | 76237194 | 76237354 | 76237194 | ID=Msa0997180-mRNA-1:exon:14335;Parent=Msa0997180-mRNA-1 |
| chr6_4 | exon | 76237377 | 76237469 | 76237377 | ID=Msa0997180-mRNA-1:exon:14334;Parent=Msa0997180-mRNA-1 |
| chr6_4 | exon | 76237807 | 76237897 | 76237807 | ID=Msa0997180-mRNA-1:exon:14333;Parent=Msa0997180-mRNA-1 |
| chr6_4 | exon | 76237981 | 76238182 | 76237981 | ID=Msa0997180-mRNA-1:exon:14332;Parent=Msa0997180-mRNA-1 |
| chr6_4 | exon | 76238892 | 76239605 | 76238892 | ID=Msa0997180-mRNA-1:exon:14331;Parent=Msa0997180-mRNA-1 |
| chr6_4 | exon | 76240279 | 76240504 | 76240279 | ID=Msa0997180-mRNA-1:exon:14330;Parent=Msa0997180-mRNA-1 |
| chr6_4 | exon | 76241011 | 76241130 | 76241011 | ID=Msa0997180-mRNA-1:exon:14329;Parent=Msa0997180-mRNA-1 |
| chr6_4 | exon | 76241253 | 76241458 | 76241253 | ID=Msa0997180-mRNA-1:exon:14328;Parent=Msa0997180-mRNA-1 |
| chr6_4 | exon | 76241547 | 76241618 | 76241547 | ID=Msa0997180-mRNA-1:exon:14327;Parent=Msa0997180-mRNA-1 |
| chr6_4 | five_prime_UTR | 76241547 | 76241618 | 76241547 | ID=Msa0997180-mRNA-1:five_prime_utr;Parent=Msa0997180-mRNA-1 |
| chr6_4 | five_prime_UTR | 76241423 | 76241458 | 76241423 | ID=Msa0997180-mRNA-1:five_prime_utr;Parent=Msa0997180-mRNA-1 |
| chr6_4 | CDS | 76241253 | 76241422 | 76241253 | ID=Msa0997180-mRNA-1:cds;Parent=Msa0997180-mRNA-1 |
| chr6_4 | CDS | 76241011 | 76241130 | 76241011 | ID=Msa0997180-mRNA-1:cds;Parent=Msa0997180-mRNA-1 |
| chr6_4 | CDS | 76240279 | 76240504 | 76240279 | ID=Msa0997180-mRNA-1:cds;Parent=Msa0997180-mRNA-1 |
| chr6_4 | CDS | 76238892 | 76239605 | 76238892 | ID=Msa0997180-mRNA-1:cds;Parent=Msa0997180-mRNA-1 |
| chr6_4 | CDS | 76237981 | 76238182 | 76237981 | ID=Msa0997180-mRNA-1:cds;Parent=Msa0997180-mRNA-1 |
| chr6_4 | CDS | 76237807 | 76237897 | 76237807 | ID=Msa0997180-mRNA-1:cds;Parent=Msa0997180-mRNA-1 |
| chr6_4 | CDS | 76237397 | 76237469 | 76237397 | ID=Msa0997180-mRNA-1:cds;Parent=Msa0997180-mRNA-1 |
| chr6_4 | three_prime_UTR | 76237377 | 76237396 | 76237377 | ID=Msa0997180-mRNA-1:three_prime_utr;Parent=Msa0997180-mRNA-1 |
| chr6_4 | three_prime_UTR | 76237194 | 76237354 | 76237194 | ID=Msa0997180-mRNA-1:three_prime_utr;Parent=Msa0997180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
