AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1223620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223620 MtrunA17_Chr4g0075171 96.533 375 7 1 1 375 1 369 0.0 731
Msa1223620 MtrunA17_Chr4g0024991 52.055 365 174 1 1 365 1 364 2.63e-112 332
Msa1223620 MtrunA17_Chr3g0142181 53.030 330 153 2 45 373 47 375 1.58e-104 313
Msa1223620 MtrunA17_Chr4g0056691 37.846 325 192 5 39 362 177 492 4.61e-65 216
Msa1223620 MtrunA17_Chr6g0462891 35.312 320 197 5 43 362 232 541 5.61e-63 212
Msa1223620 MtrunA17_Chr6g0462881 35.077 325 201 6 38 362 218 532 5.89e-63 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223620 AT1G62280.1 53.693 352 152 4 26 369 11 359 2.66e-122 358
Msa1223620 AT1G62262.1 51.397 358 152 4 19 371 13 353 3.02e-117 345
Msa1223620 AT5G24030.1 37.812 320 189 4 43 362 253 562 3.52e-67 224
Msa1223620 AT1G12480.1 35.398 339 209 4 25 362 166 495 7.59e-59 200
Msa1223620 AT4G27970.1 34.985 323 194 5 43 362 138 447 2.96e-58 197
Msa1223620 AT4G27970.6 34.985 323 194 5 43 362 138 447 2.96e-58 197
Msa1223620 AT4G27970.3 35.370 311 185 5 55 362 1 298 8.70e-58 192
Msa1223620 AT4G27970.5 35.370 311 185 5 55 362 1 298 8.70e-58 192
Msa1223620 AT5G24030.2 38.846 260 151 3 43 302 253 504 6.47e-54 186
Msa1223620 AT4G27970.4 37.008 254 146 4 43 293 138 380 7.12e-48 167
Msa1223620 AT4G27970.2 37.008 254 146 4 43 293 138 380 7.12e-48 167

Find 61 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAACCTGGTTTCTGTTAT+AGG 0.207016 8_1:+88115486 Msa1223620:CDS
CTTATATAATGCAGGCTTGC+AGG 0.280775 8_1:+88115857 Msa1223620:intron
GCTAAGCCAAGGAATGTTAA+AGG 0.296789 8_1:-88115940 None:intergenic
TCAACCTGGTTTCTGTTATA+GGG 0.297612 8_1:+88115487 Msa1223620:CDS
GACCTACCTGAGAAATAAAA+AGG 0.303132 8_1:-88115770 None:intergenic
GAATGTGATGGCTTGGTGAT+TGG 0.310351 8_1:-88114997 None:intergenic
GCAATTTCAATGTATTCATT+AGG 0.313578 8_1:+88115558 Msa1223620:CDS
CTGTTGCTTATCTATTACTT+TGG 0.340533 8_1:+88115166 Msa1223620:CDS
GATGAATTTGCACATCATAT+TGG 0.345252 8_1:+88115267 Msa1223620:CDS
TCATTCCCTTTAACATTCCT+TGG 0.356219 8_1:+88115934 Msa1223620:CDS
CAAGCTAGACTTGCCATACT+TGG 0.362804 8_1:-88115687 None:intergenic
CACACAATTATGTCAATTGT+TGG 0.378332 8_1:-88114925 None:intergenic
ACAATGAATCACAAACTCTT+TGG 0.388818 8_1:+88115121 Msa1223620:CDS
AATGTGATGGCTTGGTGATT+GGG 0.406822 8_1:-88114996 None:intergenic
TGCTTCAAGCATCACCGCCT+TGG 0.430111 8_1:+88115331 Msa1223620:CDS
GCTCAAGTTATGACAGAAAT+CGG 0.453671 8_1:+88115522 Msa1223620:CDS
ATAACAGAAACCAGGTTGAC+AGG 0.456215 8_1:-88115483 None:intergenic
TATATGTATTGTGTCTGTGC+TGG 0.461043 8_1:+88116020 Msa1223620:CDS
GGTTTCTGTTATAGGGAACT+TGG 0.463993 8_1:+88115494 Msa1223620:CDS
TTGGTGCTCAAGCTTTGCTA+TGG 0.471950 8_1:+88115079 Msa1223620:CDS
TTAACTACATGTATACTCCT+TGG 0.476184 8_1:+88115292 Msa1223620:CDS
CTAAGCCAAGGAATGTTAAA+GGG 0.477768 8_1:-88115939 None:intergenic
GACATCATAATTCATTTACT+AGG 0.484884 8_1:-88116105 None:intergenic
TGACTCTGAATGTGATGGCT+TGG 0.485943 8_1:-88115004 None:intergenic
GAGCATATAAAGAAAGGATA+AGG 0.489737 8_1:-88115214 None:intergenic
GCATGGATCTTAGTTAAGAA+TGG 0.489812 8_1:-88115030 None:intergenic
TTCAATGTATTCATTAGGAA+TGG 0.492135 8_1:+88115563 Msa1223620:CDS
CAAGTATGGCAAGTCTAGCT+TGG 0.498344 8_1:+88115688 Msa1223620:CDS
CTAGCTTGGAAATCCATCTC+AGG 0.499285 8_1:+88115702 Msa1223620:CDS
GCACTTGAGCATATAAAGAA+AGG 0.500953 8_1:-88115220 None:intergenic
TGTTCAAGAAAACTATGAAA+AGG 0.514872 8_1:+88115887 Msa1223620:CDS
AGCACTAGTAGTATTGTTCG+TGG 0.515674 8_1:-88114953 None:intergenic
GTGATGGCTTGGTGATTGGG+TGG 0.520148 8_1:-88114993 None:intergenic
AGTAGCAAACCCTGTCAACC+TGG 0.530614 8_1:+88115473 Msa1223620:CDS
TTCTGTTATAGGGAACTTGG+TGG 0.536173 8_1:+88115497 Msa1223620:CDS
CATGGCCTCTGCATTAATGC+TGG 0.539503 8_1:+88115996 Msa1223620:CDS
GAATCACAAACTCTTTGGCA+TGG 0.539825 8_1:+88115126 Msa1223620:CDS
AATGGTTCACTACTGAAAAG+AGG 0.541292 8_1:+88115439 Msa1223620:CDS
TAAGCTGGTCTTAGCACTAC+AGG 0.541582 8_1:-88115645 None:intergenic
ACTATAGAATAGAATGGGTG+AGG 0.549206 8_1:+88114891 None:intergenic
GACGAGAAAAGCACCTGAGA+TGG 0.550784 8_1:-88115715 None:intergenic
AAGTTATGACAGAAATCGGT+TGG 0.554540 8_1:+88115526 Msa1223620:CDS
TGATGGCTTGGTGATTGGGT+GGG 0.556380 8_1:-88114992 None:intergenic
CTTGCACTTTAATGCAGTGA+AGG 0.559661 8_1:+88115245 Msa1223620:CDS
TAGCAAAGCTTGAGCACCAA+AGG 0.566448 8_1:-88115076 None:intergenic
TTCTTAACTAAGATCCATGC+AGG 0.573358 8_1:+88115033 Msa1223620:CDS
TGAAAAGGCTAAACGTTACA+TGG 0.577666 8_1:+88115902 Msa1223620:CDS
TAACAGAAACCAGGTTGACA+GGG 0.582523 8_1:-88115482 None:intergenic
AGTAATAGATAAGCAACAGA+AGG 0.591520 8_1:-88115162 None:intergenic
ATGAGAAGATATGAAATCCA+AGG 0.593130 8_1:-88115309 None:intergenic
CATATAAAGAAAGGATAAGG+TGG 0.598970 8_1:-88115211 None:intergenic
GGTTGTGACTCTGAATGTGA+TGG 0.605496 8_1:-88115009 None:intergenic
ATTCAGCACAAGCTAAGCCA+AGG 0.637854 8_1:-88115951 None:intergenic
TTGTGCTGAATATGCTCATG+AGG 0.642748 8_1:+88115963 Msa1223620:CDS
TATAACCAGCATTAATGCAG+AGG 0.645479 8_1:-88116001 None:intergenic
CAAGTTCTCGAAACAATCCA+AGG 0.648724 8_1:-88115348 None:intergenic
TCATGAGGTGAAAAGTAGCA+TGG 0.675843 8_1:+88115978 Msa1223620:CDS
CTTCTCAACTTTGAGCACAG+TGG 0.684753 8_1:-88116064 None:intergenic
AAAGGCTAAACGTTACATGG+TGG 0.692493 8_1:+88115905 Msa1223620:CDS
AGTTCCCTATAACAGAAACC+AGG 0.725065 8_1:-88115491 None:intergenic
GTTCTCGAAACAATCCAAGG+CGG 0.791324 8_1:-88115345 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATATAGGGTAATTT+TGG - chr8_1:88115795-88115814 None:intergenic 15.0%
!! TAAGCAACTAAATATATATA+GGG - chr8_1:88115804-88115823 None:intergenic 15.0%
!! ATAAGCAACTAAATATATAT+AGG - chr8_1:88115805-88115824 None:intergenic 15.0%
!!! AAATATATATAGGGTAATTT+TGG - chr8_1:88115795-88115814 None:intergenic 15.0%
!! TAAGCAACTAAATATATATA+GGG - chr8_1:88115804-88115823 None:intergenic 15.0%
!! ATAAGCAACTAAATATATAT+AGG - chr8_1:88115805-88115824 None:intergenic 15.0%
!! TTTTTCATTTGTGTTTCCTT+TGG + chr8_1:88115060-88115079 Msa1223620:CDS 25.0%
!! ATGTAAAACTTTTTGGACAA+TGG + chr8_1:88115421-88115440 Msa1223620:CDS 25.0%
! GCAATTTCAATGTATTCATT+AGG + chr8_1:88115558-88115577 Msa1223620:CDS 25.0%
! TTCAATGTATTCATTAGGAA+TGG + chr8_1:88115563-88115582 Msa1223620:CDS 25.0%
!!! TTTGTTCCTTTTTATTTCTC+AGG + chr8_1:88115764-88115783 Msa1223620:CDS 25.0%
! TGTTCAAGAAAACTATGAAA+AGG + chr8_1:88115887-88115906 Msa1223620:CDS 25.0%
!! TTTTTCATTTGTGTTTCCTT+TGG + chr8_1:88115060-88115079 Msa1223620:CDS 25.0%
!! ATGTAAAACTTTTTGGACAA+TGG + chr8_1:88115421-88115440 Msa1223620:CDS 25.0%
! GCAATTTCAATGTATTCATT+AGG + chr8_1:88115558-88115577 Msa1223620:CDS 25.0%
! TTCAATGTATTCATTAGGAA+TGG + chr8_1:88115563-88115582 Msa1223620:CDS 25.0%
!!! TTTGTTCCTTTTTATTTCTC+AGG + chr8_1:88115764-88115783 Msa1223620:CDS 25.0%
! TGTTCAAGAAAACTATGAAA+AGG + chr8_1:88115887-88115906 Msa1223620:CDS 25.0%
CACACAATTATGTCAATTGT+TGG - chr8_1:88114928-88114947 None:intergenic 30.0%
ACAATGAATCACAAACTCTT+TGG + chr8_1:88115121-88115140 Msa1223620:CDS 30.0%
AGTAATAGATAAGCAACAGA+AGG - chr8_1:88115165-88115184 None:intergenic 30.0%
! CTGTTGCTTATCTATTACTT+TGG + chr8_1:88115166-88115185 Msa1223620:CDS 30.0%
CATATAAAGAAAGGATAAGG+TGG - chr8_1:88115214-88115233 None:intergenic 30.0%
GAGCATATAAAGAAAGGATA+AGG - chr8_1:88115217-88115236 None:intergenic 30.0%
GATGAATTTGCACATCATAT+TGG + chr8_1:88115267-88115286 Msa1223620:CDS 30.0%
TTAACTACATGTATACTCCT+TGG + chr8_1:88115292-88115311 Msa1223620:CDS 30.0%
ATGAGAAGATATGAAATCCA+AGG - chr8_1:88115312-88115331 None:intergenic 30.0%
! CTGCTTGATGTAAAACTTTT+TGG + chr8_1:88115414-88115433 Msa1223620:CDS 30.0%
GCAAAAAACAAGAAATAAGC+TGG - chr8_1:88115663-88115682 None:intergenic 30.0%
!! TTCCTTTTTATTTCTCAGGT+AGG + chr8_1:88115768-88115787 Msa1223620:intron 30.0%
CCTTGATCATTACAATGAAA+TGG - chr8_1:88115837-88115856 None:intergenic 30.0%
CCATTTCATTGTAATGATCA+AGG + chr8_1:88115834-88115853 Msa1223620:intron 30.0%
CACACAATTATGTCAATTGT+TGG - chr8_1:88114928-88114947 None:intergenic 30.0%
ACAATGAATCACAAACTCTT+TGG + chr8_1:88115121-88115140 Msa1223620:CDS 30.0%
AGTAATAGATAAGCAACAGA+AGG - chr8_1:88115165-88115184 None:intergenic 30.0%
! CTGTTGCTTATCTATTACTT+TGG + chr8_1:88115166-88115185 Msa1223620:CDS 30.0%
CATATAAAGAAAGGATAAGG+TGG - chr8_1:88115214-88115233 None:intergenic 30.0%
GAGCATATAAAGAAAGGATA+AGG - chr8_1:88115217-88115236 None:intergenic 30.0%
GATGAATTTGCACATCATAT+TGG + chr8_1:88115267-88115286 Msa1223620:CDS 30.0%
TTAACTACATGTATACTCCT+TGG + chr8_1:88115292-88115311 Msa1223620:CDS 30.0%
ATGAGAAGATATGAAATCCA+AGG - chr8_1:88115312-88115331 None:intergenic 30.0%
! CTGCTTGATGTAAAACTTTT+TGG + chr8_1:88115414-88115433 Msa1223620:CDS 30.0%
GCAAAAAACAAGAAATAAGC+TGG - chr8_1:88115663-88115682 None:intergenic 30.0%
!! TTCCTTTTTATTTCTCAGGT+AGG + chr8_1:88115768-88115787 Msa1223620:intron 30.0%
CCTTGATCATTACAATGAAA+TGG - chr8_1:88115837-88115856 None:intergenic 30.0%
CCATTTCATTGTAATGATCA+AGG + chr8_1:88115834-88115853 Msa1223620:intron 30.0%
GCATGGATCTTAGTTAAGAA+TGG - chr8_1:88115033-88115052 None:intergenic 35.0%
TTCTTAACTAAGATCCATGC+AGG + chr8_1:88115033-88115052 Msa1223620:CDS 35.0%
AAATGAAAAAGTAGCCTGCA+TGG - chr8_1:88115050-88115069 None:intergenic 35.0%
GCACTTGAGCATATAAAGAA+AGG - chr8_1:88115223-88115242 None:intergenic 35.0%
AATGGTTCACTACTGAAAAG+AGG + chr8_1:88115439-88115458 Msa1223620:CDS 35.0%
TCAACCTGGTTTCTGTTATA+GGG + chr8_1:88115487-88115506 Msa1223620:CDS 35.0%
GCTCAAGTTATGACAGAAAT+CGG + chr8_1:88115522-88115541 Msa1223620:CDS 35.0%
AAGTTATGACAGAAATCGGT+TGG + chr8_1:88115526-88115545 Msa1223620:CDS 35.0%
GACCTACCTGAGAAATAAAA+AGG - chr8_1:88115773-88115792 None:intergenic 35.0%
GATCAAGGCTTATATAATGC+AGG + chr8_1:88115849-88115868 Msa1223620:intron 35.0%
! ATAGTTTTCTTGAACAGTGC+TGG - chr8_1:88115883-88115902 None:intergenic 35.0%
TGAAAAGGCTAAACGTTACA+TGG + chr8_1:88115902-88115921 Msa1223620:CDS 35.0%
TCATTCCCTTTAACATTCCT+TGG + chr8_1:88115934-88115953 Msa1223620:CDS 35.0%
CTAAGCCAAGGAATGTTAAA+GGG - chr8_1:88115942-88115961 None:intergenic 35.0%
TATAACCAGCATTAATGCAG+AGG - chr8_1:88116004-88116023 None:intergenic 35.0%
TATATGTATTGTGTCTGTGC+TGG + chr8_1:88116020-88116039 Msa1223620:CDS 35.0%
GCATGGATCTTAGTTAAGAA+TGG - chr8_1:88115033-88115052 None:intergenic 35.0%
TTCTTAACTAAGATCCATGC+AGG + chr8_1:88115033-88115052 Msa1223620:CDS 35.0%
AAATGAAAAAGTAGCCTGCA+TGG - chr8_1:88115050-88115069 None:intergenic 35.0%
GCACTTGAGCATATAAAGAA+AGG - chr8_1:88115223-88115242 None:intergenic 35.0%
AATGGTTCACTACTGAAAAG+AGG + chr8_1:88115439-88115458 Msa1223620:CDS 35.0%
TCAACCTGGTTTCTGTTATA+GGG + chr8_1:88115487-88115506 Msa1223620:CDS 35.0%
GCTCAAGTTATGACAGAAAT+CGG + chr8_1:88115522-88115541 Msa1223620:CDS 35.0%
AAGTTATGACAGAAATCGGT+TGG + chr8_1:88115526-88115545 Msa1223620:CDS 35.0%
GACCTACCTGAGAAATAAAA+AGG - chr8_1:88115773-88115792 None:intergenic 35.0%
GATCAAGGCTTATATAATGC+AGG + chr8_1:88115849-88115868 Msa1223620:intron 35.0%
! ATAGTTTTCTTGAACAGTGC+TGG - chr8_1:88115883-88115902 None:intergenic 35.0%
TGAAAAGGCTAAACGTTACA+TGG + chr8_1:88115902-88115921 Msa1223620:CDS 35.0%
TCATTCCCTTTAACATTCCT+TGG + chr8_1:88115934-88115953 Msa1223620:CDS 35.0%
CTAAGCCAAGGAATGTTAAA+GGG - chr8_1:88115942-88115961 None:intergenic 35.0%
TATAACCAGCATTAATGCAG+AGG - chr8_1:88116004-88116023 None:intergenic 35.0%
TATATGTATTGTGTCTGTGC+TGG + chr8_1:88116020-88116039 Msa1223620:CDS 35.0%
AGCACTAGTAGTATTGTTCG+TGG - chr8_1:88114956-88114975 None:intergenic 40.0%
!! AATGTGATGGCTTGGTGATT+GGG - chr8_1:88114999-88115018 None:intergenic 40.0%
GAATCACAAACTCTTTGGCA+TGG + chr8_1:88115126-88115145 Msa1223620:CDS 40.0%
CTTGCACTTTAATGCAGTGA+AGG + chr8_1:88115245-88115264 Msa1223620:CDS 40.0%
CAAGTTCTCGAAACAATCCA+AGG - chr8_1:88115351-88115370 None:intergenic 40.0%
! TAACAGAAACCAGGTTGACA+GGG - chr8_1:88115485-88115504 None:intergenic 40.0%
! ATAACAGAAACCAGGTTGAC+AGG - chr8_1:88115486-88115505 None:intergenic 40.0%
GTCAACCTGGTTTCTGTTAT+AGG + chr8_1:88115486-88115505 Msa1223620:CDS 40.0%
AGTTCCCTATAACAGAAACC+AGG - chr8_1:88115494-88115513 None:intergenic 40.0%
GGTTTCTGTTATAGGGAACT+TGG + chr8_1:88115494-88115513 Msa1223620:CDS 40.0%
TTCTGTTATAGGGAACTTGG+TGG + chr8_1:88115497-88115516 Msa1223620:CDS 40.0%
!!! GTTTTTTGCTGCACCAAGTA+TGG + chr8_1:88115674-88115693 Msa1223620:CDS 40.0%
CTTATATAATGCAGGCTTGC+AGG + chr8_1:88115857-88115876 Msa1223620:intron 40.0%
AAAGGCTAAACGTTACATGG+TGG + chr8_1:88115905-88115924 Msa1223620:CDS 40.0%
GCTAAGCCAAGGAATGTTAA+AGG - chr8_1:88115943-88115962 None:intergenic 40.0%
TTGTGCTGAATATGCTCATG+AGG + chr8_1:88115963-88115982 Msa1223620:CDS 40.0%
TCATGAGGTGAAAAGTAGCA+TGG + chr8_1:88115978-88115997 Msa1223620:CDS 40.0%
AGCACTAGTAGTATTGTTCG+TGG - chr8_1:88114956-88114975 None:intergenic 40.0%
!! AATGTGATGGCTTGGTGATT+GGG - chr8_1:88114999-88115018 None:intergenic 40.0%
GAATCACAAACTCTTTGGCA+TGG + chr8_1:88115126-88115145 Msa1223620:CDS 40.0%
CTTGCACTTTAATGCAGTGA+AGG + chr8_1:88115245-88115264 Msa1223620:CDS 40.0%
CAAGTTCTCGAAACAATCCA+AGG - chr8_1:88115351-88115370 None:intergenic 40.0%
! TAACAGAAACCAGGTTGACA+GGG - chr8_1:88115485-88115504 None:intergenic 40.0%
! ATAACAGAAACCAGGTTGAC+AGG - chr8_1:88115486-88115505 None:intergenic 40.0%
GTCAACCTGGTTTCTGTTAT+AGG + chr8_1:88115486-88115505 Msa1223620:CDS 40.0%
AGTTCCCTATAACAGAAACC+AGG - chr8_1:88115494-88115513 None:intergenic 40.0%
GGTTTCTGTTATAGGGAACT+TGG + chr8_1:88115494-88115513 Msa1223620:CDS 40.0%
TTCTGTTATAGGGAACTTGG+TGG + chr8_1:88115497-88115516 Msa1223620:CDS 40.0%
!!! GTTTTTTGCTGCACCAAGTA+TGG + chr8_1:88115674-88115693 Msa1223620:CDS 40.0%
CTTATATAATGCAGGCTTGC+AGG + chr8_1:88115857-88115876 Msa1223620:intron 40.0%
AAAGGCTAAACGTTACATGG+TGG + chr8_1:88115905-88115924 Msa1223620:CDS 40.0%
GCTAAGCCAAGGAATGTTAA+AGG - chr8_1:88115943-88115962 None:intergenic 40.0%
TTGTGCTGAATATGCTCATG+AGG + chr8_1:88115963-88115982 Msa1223620:CDS 40.0%
TCATGAGGTGAAAAGTAGCA+TGG + chr8_1:88115978-88115997 Msa1223620:CDS 40.0%
!! GAATGTGATGGCTTGGTGAT+TGG - chr8_1:88115000-88115019 None:intergenic 45.0%
TGACTCTGAATGTGATGGCT+TGG - chr8_1:88115007-88115026 None:intergenic 45.0%
GGTTGTGACTCTGAATGTGA+TGG - chr8_1:88115012-88115031 None:intergenic 45.0%
TAGCAAAGCTTGAGCACCAA+AGG - chr8_1:88115079-88115098 None:intergenic 45.0%
! TTGGTGCTCAAGCTTTGCTA+TGG + chr8_1:88115079-88115098 Msa1223620:CDS 45.0%
GTTCTCGAAACAATCCAAGG+CGG - chr8_1:88115348-88115367 None:intergenic 45.0%
!! TAAGCTGGTCTTAGCACTAC+AGG - chr8_1:88115648-88115667 None:intergenic 45.0%
CAAGCTAGACTTGCCATACT+TGG - chr8_1:88115690-88115709 None:intergenic 45.0%
CAAGTATGGCAAGTCTAGCT+TGG + chr8_1:88115688-88115707 Msa1223620:CDS 45.0%
CTAGCTTGGAAATCCATCTC+AGG + chr8_1:88115702-88115721 Msa1223620:CDS 45.0%
ATTCAGCACAAGCTAAGCCA+AGG - chr8_1:88115954-88115973 None:intergenic 45.0%
CTTCTCAACTTTGAGCACAG+TGG - chr8_1:88116067-88116086 None:intergenic 45.0%
!! GAATGTGATGGCTTGGTGAT+TGG - chr8_1:88115000-88115019 None:intergenic 45.0%
TGACTCTGAATGTGATGGCT+TGG - chr8_1:88115007-88115026 None:intergenic 45.0%
GGTTGTGACTCTGAATGTGA+TGG - chr8_1:88115012-88115031 None:intergenic 45.0%
TAGCAAAGCTTGAGCACCAA+AGG - chr8_1:88115079-88115098 None:intergenic 45.0%
! TTGGTGCTCAAGCTTTGCTA+TGG + chr8_1:88115079-88115098 Msa1223620:CDS 45.0%
GTTCTCGAAACAATCCAAGG+CGG - chr8_1:88115348-88115367 None:intergenic 45.0%
!! TAAGCTGGTCTTAGCACTAC+AGG - chr8_1:88115648-88115667 None:intergenic 45.0%
CAAGCTAGACTTGCCATACT+TGG - chr8_1:88115690-88115709 None:intergenic 45.0%
CAAGTATGGCAAGTCTAGCT+TGG + chr8_1:88115688-88115707 Msa1223620:CDS 45.0%
CTAGCTTGGAAATCCATCTC+AGG + chr8_1:88115702-88115721 Msa1223620:CDS 45.0%
ATTCAGCACAAGCTAAGCCA+AGG - chr8_1:88115954-88115973 None:intergenic 45.0%
CTTCTCAACTTTGAGCACAG+TGG - chr8_1:88116067-88116086 None:intergenic 45.0%
!! TGATGGCTTGGTGATTGGGT+GGG - chr8_1:88114995-88115014 None:intergenic 50.0%
AGTAGCAAACCCTGTCAACC+TGG + chr8_1:88115473-88115492 Msa1223620:CDS 50.0%
!! GACGAGAAAAGCACCTGAGA+TGG - chr8_1:88115718-88115737 None:intergenic 50.0%
CATGGCCTCTGCATTAATGC+TGG + chr8_1:88115996-88116015 Msa1223620:CDS 50.0%
!! TGATGGCTTGGTGATTGGGT+GGG - chr8_1:88114995-88115014 None:intergenic 50.0%
AGTAGCAAACCCTGTCAACC+TGG + chr8_1:88115473-88115492 Msa1223620:CDS 50.0%
!! GACGAGAAAAGCACCTGAGA+TGG - chr8_1:88115718-88115737 None:intergenic 50.0%
CATGGCCTCTGCATTAATGC+TGG + chr8_1:88115996-88116015 Msa1223620:CDS 50.0%
!! GTGATGGCTTGGTGATTGGG+TGG - chr8_1:88114996-88115015 None:intergenic 55.0%
TGCTTCAAGCATCACCGCCT+TGG + chr8_1:88115331-88115350 Msa1223620:CDS 55.0%
!! GTGATGGCTTGGTGATTGGG+TGG - chr8_1:88114996-88115015 None:intergenic 55.0%
TGCTTCAAGCATCACCGCCT+TGG + chr8_1:88115331-88115350 Msa1223620:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 88114904 88116116 88114904 ID=Msa1223620;Name=Msa1223620
chr8_1 mRNA 88114904 88116116 88114904 ID=Msa1223620-mRNA-1;Parent=Msa1223620;Name=Msa1223620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|375
chr8_1 exon 88114904 88115785 88114904 ID=Msa1223620-mRNA-1:exon:31978;Parent=Msa1223620-mRNA-1
chr8_1 exon 88115871 88116116 88115871 ID=Msa1223620-mRNA-1:exon:31979;Parent=Msa1223620-mRNA-1
chr8_1 CDS 88114904 88115785 88114904 ID=Msa1223620-mRNA-1:cds;Parent=Msa1223620-mRNA-1
chr8_1 CDS 88115871 88116116 88115871 ID=Msa1223620-mRNA-1:cds;Parent=Msa1223620-mRNA-1
Gene Sequence

>Msa1223620

ATGGGTGAGGTTGCAATGAAGCCAACAATTGACATAATTGTGTGTGCTTCCACGAACAATACTACTAGTGCTAAAAACATTGATAATTCCCACCCAATCACCAAGCCATCACATTCAGAGTCACAACCATTCTTAACTAAGATCCATGCAGGCTACTTTTTCATTTGTGTTTCCTTTGGTGCTCAAGCTTTGCTATGGAAGAGTTTAAGTGAACATAACAATGAATCACAAACTCTTTGGCATGGATTTAATTTCATGCCTTCTGTTGCTTATCTATTACTTTGGTGTCTTGCAGTACTCATTGCAGCCACCTTATCCTTTCTTTATATGCTCAAGTGCATCTTGCACTTTAATGCAGTGAAGGATGAATTTGCACATCATATTGGAGTTAACTACATGTATACTCCTTGGATTTCATATCTTCTCATGCTTCAAGCATCACCGCCTTGGATTGTTTCGAGAACTTGTTACTACGAGTTTCTTTGTCTAGCATTTTCTTTTGTAATATTTCTGCTTGATGTAAAACTTTTTGGACAATGGTTCACTACTGAAAAGAGGTTTCTGTCAGTAGTAGCAAACCCTGTCAACCTGGTTTCTGTTATAGGGAACTTGGTGGCTGCTCAAGTTATGACAGAAATCGGTTGGAACGAGATTGCAATTTCAATGTATTCATTAGGAATGGTACATTATTTGATTCTATTTGTGACGCTGTATCAGCGTCTAACAAGTAGTAATCAGTTTCCTGTAGTGCTAAGACCAGCTTATTTCTTGTTTTTTGCTGCACCAAGTATGGCAAGTCTAGCTTGGAAATCCATCTCAGGTGCTTTTCTCGTCTCATCAAAGATGCTGTTCTTTCTCTCTTTGTTCCTTTTTATTTCTCAGGCTTGCAGGCCAGCACTGTTCAAGAAAACTATGAAAAGGCTAAACGTTACATGGTGGATTTACTCATTCCCTTTAACATTCCTTGGCTTAGCTTGTGCTGAATATGCTCATGAGGTGAAAAGTAGCATGGCCTCTGCATTAATGCTGGTTATATGTATTGTGTCTGTGCTGGTTTTTGTCTTTTTGATGCTAACCACTGTGCTCAAAGTTGAGAAGTTGCTGCATAAAAAAGCTCCTAGTAAATGA

Protein sequence

>Msa1223620

MGEVAMKPTIDIIVCASTNNTTSAKNIDNSHPITKPSHSESQPFLTKIHAGYFFICVSFGAQALLWKSLSEHNNESQTLWHGFNFMPSVAYLLLWCLAVLIAATLSFLYMLKCILHFNAVKDEFAHHIGVNYMYTPWISYLLMLQASPPWIVSRTCYYEFLCLAFSFVIFLLDVKLFGQWFTTEKRFLSVVANPVNLVSVIGNLVAAQVMTEIGWNEIAISMYSLGMVHYLILFVTLYQRLTSSNQFPVVLRPAYFLFFAAPSMASLAWKSISGAFLVSSKMLFFLSLFLFISQACRPALFKKTMKRLNVTWWIYSFPLTFLGLACAEYAHEVKSSMASALMLVICIVSVLVFVFLMLTTVLKVEKLLHKKAPSK*