AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1338810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1338810 MtrunA17_Chr1g0202411 95.804 286 9 1 1 286 21 303 0.0 551
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1338810 AT1G28140.1 71.774 248 63 2 43 283 31 278 5.89e-118 340

Find 104 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGATGAGGTTATTATTA+TGG 0.190255 tig0002658:-13696 Msa1338810:five_prime_UTR
CAAGTTTATAACGGCGTTTA+TGG 0.193049 tig0002658:-13457 Msa1338810:CDS
AACCTGTACTACATTGTTAT+TGG 0.198954 tig0002658:+11184 None:intergenic
AGCGCACTCTGCAAGCATTA+TGG 0.246210 tig0002658:-12575 Msa1338810:CDS
ACAATCTTTACAGGTATAAA+AGG 0.268933 tig0002658:+11219 None:intergenic
TTATGGGGCCTCGGGGTTCT+TGG 0.285137 tig0002658:-12558 Msa1338810:CDS
GAAAGCCTTGATTGAGAAAC+TGG 0.308650 tig0002658:-11407 Msa1338810:CDS
AACTTACTTTGCTTGCGTTA+TGG 0.311852 tig0002658:-11627 Msa1338810:CDS
CGTCATTGGGTCAGGTGGGT+TGG 0.319339 tig0002658:-12640 Msa1338810:CDS
ACCTGTACTACATTGTTATT+GGG 0.329643 tig0002658:+11185 None:intergenic
ATTATTCCCATTCTTCTTCT+CGG 0.334508 tig0002658:-12249 Msa1338810:CDS
TCATAAGTAATTTACCTTGA+TGG 0.335092 tig0002658:+11561 None:intergenic
GACAGCGAAAATCAGAAATA+TGG 0.353072 tig0002658:-13650 Msa1338810:exon
GTCATTGGGTCAGGTGGGTT+GGG 0.353231 tig0002658:-12639 Msa1338810:CDS
AAATTTGCAGTCCGGTTTGA+TGG 0.360898 tig0002658:-11662 Msa1338810:intron
ACTTAGGTCACCGGGCAAAT+AGG 0.361128 tig0002658:+12695 None:intergenic
CATTCTTCTTCTCGGACATC+TGG 0.369276 tig0002658:-12241 Msa1338810:intron
CGCCGTTATAAACTTGTTGT+TGG 0.370560 tig0002658:+13464 None:intergenic
GCGCACTCTGCAAGCATTAT+GGG 0.374010 tig0002658:-12574 Msa1338810:CDS
CCATCAGCTGTCTGGCTTGT+CGG 0.381851 tig0002658:-12465 Msa1338810:CDS
CAAGTTTATGTCTTGGCGGT+CGG 0.386160 tig0002658:-13543 Msa1338810:CDS
ACATAGCATACAATCTTTAC+AGG 0.389012 tig0002658:+11210 None:intergenic
TGCAAGCATTATGGGGCCTC+GGG 0.396833 tig0002658:-12566 Msa1338810:CDS
CTGCAAGCATTATGGGGCCT+CGG 0.396844 tig0002658:-12567 Msa1338810:CDS
TTGTTCCAGTTTCTCAATCA+AGG 0.397711 tig0002658:+11402 None:intergenic
AAGTTTATGTCTTGGCGGTC+GGG 0.403259 tig0002658:-13542 Msa1338810:CDS
CATAAGTAATTTACCTTGAT+GGG 0.407793 tig0002658:+11562 None:intergenic
ACCGACCCAATTCTGATTCT+CGG 0.410553 tig0002658:+13511 None:intergenic
ATCTTCGGCTTCAACGGTCC+AGG 0.413922 tig0002658:+13432 None:intergenic
CCTTCTTCAAGTTTATGTCT+TGG 0.419897 tig0002658:-13550 Msa1338810:CDS
TACTTTGCTTGCGTTATGGA+TGG 0.419907 tig0002658:-11623 Msa1338810:CDS
CCTTCTCCGAGAATCAGAAT+TGG 0.420118 tig0002658:-13517 Msa1338810:CDS
TTGATAACCCATCAGCTGTC+TGG 0.422836 tig0002658:-12473 Msa1338810:CDS
GAGTACCTCTTTGACATCTT+CGG 0.430335 tig0002658:+13417 None:intergenic
CTACATCACCCTTGGCCAAC+CGG 0.432185 tig0002658:-12523 Msa1338810:CDS
AATTCGAACAAGATTAGAAA+TGG 0.436512 tig0002658:+13573 None:intergenic
GGGCTGAGTGAATTTCCTTC+CGG 0.442279 tig0002658:+11582 None:intergenic
AGTCCACCCCTAGGGTGTAT+TGG 0.446765 tig0002658:+11350 None:intergenic
GAGAGATTTGAACGTGAAAA+CGG 0.450871 tig0002658:+11444 None:intergenic
AGTTCCGTCGTCCATCAAAC+CGG 0.455453 tig0002658:+11651 None:intergenic
ATAACGGCGTTTATGGCCCC+TGG 0.459012 tig0002658:-13450 Msa1338810:CDS
GCATCTGCCGCCTATTTGCC+CGG 0.459649 tig0002658:-12705 Msa1338810:CDS
TCAAAACACAAGATTTGATC+AGG 0.461775 tig0002658:-13751 None:intergenic
ATTATAAAAGAAAAGTTGTC+AGG 0.464062 tig0002658:-11122 Msa1338810:three_prime_UTR
CAGATGTCCGAGAAGAAGAA+TGG 0.465446 tig0002658:+12242 None:intergenic
CAGGTTATATCGTACCGATC+AGG 0.483142 tig0002658:-12762 Msa1338810:CDS
TTTGACATCTTCGGCTTCAA+CGG 0.489022 tig0002658:+13426 None:intergenic
TCTTCAAGTTTATGTCTTGG+CGG 0.493287 tig0002658:-13547 Msa1338810:CDS
CCCCTAGGGTGTATTGGAGC+TGG 0.495656 tig0002658:+11356 None:intergenic
TGCTACGGCAAGCTAGAAGC+TGG 0.499071 tig0002658:-12285 Msa1338810:CDS
CTTCTCCGAGAATCAGAATT+GGG 0.500907 tig0002658:-13516 Msa1338810:CDS
ACTTTGCTTGCGTTATGGAT+GGG 0.501479 tig0002658:-11622 Msa1338810:CDS
CTCTCTTATATGAGAACTGC+AGG 0.503204 tig0002658:+11265 None:intergenic
TCTTCGGCTTCAACGGTCCA+GGG 0.516093 tig0002658:+13433 None:intergenic
TTTGCTTGAGCGTATCACTT+AGG 0.523274 tig0002658:+12679 None:intergenic
CCGACAAGCCAGACAGCTGA+TGG 0.523521 tig0002658:+12465 None:intergenic
ATCAGAAATATGGCGTTACA+AGG 0.523943 tig0002658:-13640 Msa1338810:exon
AGATGTCCGAGAAGAAGAAT+GGG 0.525851 tig0002658:+12243 None:intergenic
GAGCGTATCACTTAGGTCAC+CGG 0.527425 tig0002658:+12686 None:intergenic
AACCAACAACAAGTTTATAA+CGG 0.529478 tig0002658:-13466 Msa1338810:CDS
CATATATACTTACAGTGAGC+AGG 0.537449 tig0002658:+11071 None:intergenic
TGGCGGTTTCAATATCTGTA+AGG 0.539090 tig0002658:-13600 Msa1338810:CDS
TTTACGTCATTGGGTCAGGT+GGG 0.540791 tig0002658:-12644 Msa1338810:CDS
CGGTTGGCCAAGGGTGATGT+AGG 0.542884 tig0002658:+12524 None:intergenic
ACCCAATAACAATGTAGTAC+AGG 0.543867 tig0002658:-11186 Msa1338810:three_prime_UTR
TCGGTACGGTGTAAAGCGGC+GGG 0.552551 tig0002658:-13493 Msa1338810:CDS
CAATTCTGATTCTCGGAGAA+GGG 0.554524 tig0002658:+13518 None:intergenic
CCAAGACATAAACTTGAAGA+AGG 0.556172 tig0002658:+13550 None:intergenic
ACCAGCTCCAATACACCCTA+GGG 0.561800 tig0002658:-11357 Msa1338810:three_prime_UTR
CCAATTCTGATTCTCGGAGA+AGG 0.562090 tig0002658:+13517 None:intergenic
GTCGGTACGGTGTAAAGCGG+CGG 0.563056 tig0002658:-13494 Msa1338810:CDS
TATATCGTACCGATCAGGAT+TGG 0.575057 tig0002658:-12757 Msa1338810:CDS
TTTATTAGCCGGTTGGCCAA+GGG 0.576636 tig0002658:+12515 None:intergenic
GAAATTCACTCAGCCCATCA+AGG 0.577695 tig0002658:-11575 Msa1338810:intron
AGTTCAAGGAGTCCACCCCT+AGG 0.581372 tig0002658:+11341 None:intergenic
CGCACTCTGCAAGCATTATG+GGG 0.582516 tig0002658:-12573 Msa1338810:CDS
AGCGTATCACTTAGGTCACC+GGG 0.582838 tig0002658:+12687 None:intergenic
GCTGCAACCTACATCACCCT+TGG 0.585180 tig0002658:-12531 Msa1338810:CDS
CGAACAAGATTAGAAATGGA+AGG 0.595756 tig0002658:+13577 None:intergenic
GTTCAAGGAGTCCACCCCTA+GGG 0.605210 tig0002658:+11342 None:intergenic
CTTGAAACAGGACTCTGCTA+CGG 0.605674 tig0002658:-12300 Msa1338810:intron
GAATCAGAATTGGGTCGGTA+CGG 0.606759 tig0002658:-13507 Msa1338810:CDS
AGGATTAAGTACTGTTTCTG+TGG 0.608660 tig0002658:-13620 Msa1338810:CDS
TCCGAGAATCAGAATTGGGT+CGG 0.617946 tig0002658:-13512 Msa1338810:CDS
AATAACAATGTAGTACAGGT+TGG 0.618070 tig0002658:-11182 Msa1338810:three_prime_UTR
TTTAATATCAAGGATGACAT+CGG 0.623685 tig0002658:-11475 Msa1338810:intron
ATTAAGTACTGTTTCTGTGG+CGG 0.624479 tig0002658:-13617 Msa1338810:CDS
TACCAGCTCCAATACACCCT+AGG 0.625573 tig0002658:-11358 Msa1338810:three_prime_UTR
ATCAGGATTGGTAACAGCTG+CGG 0.633244 tig0002658:-12745 Msa1338810:CDS
CGACAAGCCAGACAGCTGAT+GGG 0.633627 tig0002658:+12466 None:intergenic
TAGGTCACCGGGCAAATAGG+CGG 0.635330 tig0002658:+12698 None:intergenic
CTTCGGCTTCAACGGTCCAG+GGG 0.636756 tig0002658:+13434 None:intergenic
AAACACAAGATTTGATCAGG+TGG 0.637760 tig0002658:-13748 None:intergenic
CAGCTGTTACCAATCCTGAT+CGG 0.643027 tig0002658:+12748 None:intergenic
CAGTCCGGTTTGATGGACGA+CGG 0.644994 tig0002658:-11655 Msa1338810:CDS
GGTGGACTCCTTGAACTCGT+AGG 0.660570 tig0002658:-11335 Msa1338810:three_prime_UTR
TGAAGCCGAAGATGTCAAAG+AGG 0.661714 tig0002658:-13422 Msa1338810:intron
GCAGTTCTCATATAAGAGAG+AGG 0.662102 tig0002658:-11262 Msa1338810:three_prime_UTR
TGGGTCGGTACGGTGTAAAG+CGG 0.668122 tig0002658:-13497 Msa1338810:CDS
GCTCCAATACACCCTAGGGG+TGG 0.670536 tig0002658:-11353 Msa1338810:three_prime_UTR
GCAAGCATTATGGGGCCTCG+GGG 0.704748 tig0002658:-12565 Msa1338810:CDS
TCTTATATGAGAACTGCAGG+CGG 0.723144 tig0002658:+11268 None:intergenic
CCAGCTCCAATACACCCTAG+GGG 0.773623 tig0002658:-11356 Msa1338810:three_prime_UTR
CAGCTGATCCAAGAACCCCG+AGG 0.791341 tig0002658:+12550 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTATTGAATTAATATTAAA+TGG + tig0002658:12395-12414 None:intergenic 10.0%
!! AATTAATTATTGACAACTTT+AGG - tig0002658:11625-11644 Msa1338810:CDS 15.0%
!! AAAATATAAATATGACCAAT+GGG + tig0002658:11706-11725 None:intergenic 15.0%
!! AAAAATATAAATATGACCAA+TGG + tig0002658:11707-11726 None:intergenic 15.0%
!!! TTATATTTTTAAGAGACATT+TGG - tig0002658:11717-11736 Msa1338810:intron 15.0%
!! ATGGTAAAAATAAAAATAGA+TGG + tig0002658:12376-12395 None:intergenic 15.0%
!! TAATATTAATTCAATAGAGA+AGG - tig0002658:12397-12416 Msa1338810:intron 15.0%
!! AATATTAATTCAATAGAGAA+GGG - tig0002658:12398-12417 Msa1338810:intron 15.0%
!!! TTTTTCTTTTCAATTAGTTA+AGG - tig0002658:12626-12645 Msa1338810:CDS 15.0%
!! AGAAAAAGATATTATACAAA+TGG + tig0002658:13066-13085 None:intergenic 15.0%
!!! ATTTTTTTCGAAAAAAATGA+TGG - tig0002658:13446-13465 Msa1338810:CDS 15.0%
!! AAATGATGAGGTTATTATTA+TGG - tig0002658:11061-11080 Msa1338810:three_prime_UTR 20.0%
!!! AAATTGTTATTACTCCATAA+GGG + tig0002658:11556-11575 None:intergenic 20.0%
!! AATATACCTGATTCAAAATT+TGG - tig0002658:11753-11772 Msa1338810:intron 20.0%
!!! ATTGATTTTTTTTACGTCAT+TGG - tig0002658:12103-12122 Msa1338810:intron 20.0%
!!! TTGATTTTTTTTACGTCATT+GGG - tig0002658:12104-12123 Msa1338810:intron 20.0%
!!! TGTATTAAAGTTTTATTAGC+CGG + tig0002658:12256-12275 None:intergenic 20.0%
!! AATTATCAAAATCATGAGAA+TGG - tig0002658:12680-12699 Msa1338810:CDS 20.0%
!! CATCAAAAGAAATATGATAA+CGG + tig0002658:12907-12926 None:intergenic 20.0%
!! CTATTATTTATTTGAATCCA+TGG - tig0002658:12927-12946 Msa1338810:intron 20.0%
!! ATTATAAAAGAAAAGTTGTC+AGG - tig0002658:13635-13654 Msa1338810:exon 20.0%
! AATTCGAACAAGATTAGAAA+TGG + tig0002658:11187-11206 None:intergenic 25.0%
! AACCAACAACAAGTTTATAA+CGG - tig0002658:11291-11310 Msa1338810:three_prime_UTR 25.0%
! CTTATAACAGAAATTGATTG+AGG + tig0002658:11373-11392 None:intergenic 25.0%
! AACTGAATTTAGAAAACAGA+AGG + tig0002658:11458-11477 None:intergenic 25.0%
!! CAAATTGTTATTACTCCATA+AGG + tig0002658:11557-11576 None:intergenic 25.0%
! CTTAAGTGTCTCTTAAAAAT+AGG - tig0002658:11799-11818 Msa1338810:intron 25.0%
!! CATGTTGCCTATTTAATTTA+AGG - tig0002658:12575-12594 Msa1338810:CDS 25.0%
! ATGGCTACCTTAAATTAAAT+AGG + tig0002658:12585-12604 None:intergenic 25.0%
!! TTTTCAATTAGTTAAGGAGT+TGG - tig0002658:12632-12651 Msa1338810:CDS 25.0%
!!! TTTTTTCGATGAAGATCTAA+TGG - tig0002658:12707-12726 Msa1338810:CDS 25.0%
! ACAATAATTTAAGAGTCAAG+AGG + tig0002658:12965-12984 None:intergenic 25.0%
! TATTATACAAATGGACCAAT+CGG + tig0002658:13057-13076 None:intergenic 25.0%
! CATAAGTAATTTACCTTGAT+GGG + tig0002658:13198-13217 None:intergenic 25.0%
! TCATAAGTAATTTACCTTGA+TGG + tig0002658:13199-13218 None:intergenic 25.0%
! TAAACACAAATCCAATATCA+GGG + tig0002658:13266-13285 None:intergenic 25.0%
! TTAAACACAAATCCAATATC+AGG + tig0002658:13267-13286 None:intergenic 25.0%
! TGGATTTGTGTTTAATATCA+AGG - tig0002658:13272-13291 Msa1338810:intron 25.0%
! TTTAATATCAAGGATGACAT+CGG - tig0002658:13282-13301 Msa1338810:intron 25.0%
! ACAATCTTTACAGGTATAAA+AGG + tig0002658:13541-13560 None:intergenic 25.0%
!! CCTCATCATTTTTATTCTTG+TGG + tig0002658:11052-11071 None:intergenic 30.0%
CCACAAGAATAAAAATGATG+AGG - tig0002658:11049-11068 Msa1338810:three_prime_UTR 30.0%
ATACTAACTAACACGTGATA+AGG + tig0002658:11403-11422 None:intergenic 30.0%
! ACGTGTTAGTTAGTATTGAA+AGG - tig0002658:11407-11426 Msa1338810:CDS 30.0%
GGGAAAAGGAATTACAATAA+TGG + tig0002658:11536-11555 None:intergenic 30.0%
! TTGTAATTCCTTTTCCCTTA+TGG - tig0002658:11539-11558 Msa1338810:intron 30.0%
TTATTACTCCATAAGGGAAA+AGG + tig0002658:11550-11569 None:intergenic 30.0%
GTGTCTCTTAAAAATAGGAT+CGG - tig0002658:11804-11823 Msa1338810:intron 30.0%
TCTTAAAAATAGGATCGGAT+CGG - tig0002658:11809-11828 Msa1338810:intron 30.0%
TAGTTAGCATTGCATACATA+GGG + tig0002658:11966-11985 None:intergenic 30.0%
ATAGTTAGCATTGCATACAT+AGG + tig0002658:11967-11986 None:intergenic 30.0%
!!! TTAAAGTTTTATTAGCCGGT+TGG + tig0002658:12252-12271 None:intergenic 30.0%
TCATCTTGTATTCTTGAAAC+AGG - tig0002658:12445-12464 Msa1338810:CDS 30.0%
ATTATTCCCATTCTTCTTCT+CGG - tig0002658:12508-12527 Msa1338810:CDS 30.0%
! TGTTTAATAGAGCACTTTAG+AGG + tig0002658:12557-12576 None:intergenic 30.0%
AACAAGAACCATATATGCTA+TGG + tig0002658:12604-12623 None:intergenic 30.0%
!! TGATAACGGTTATCAATTCA+GGG + tig0002658:12893-12912 None:intergenic 30.0%
!! ATGATAACGGTTATCAATTC+AGG + tig0002658:12894-12913 None:intergenic 30.0%
!! TTACTCTAAAATTTGCAGTC+CGG - tig0002658:13087-13106 Msa1338810:intron 30.0%
AAAAAATTCCTACGAGTTCA+AGG + tig0002658:13433-13452 None:intergenic 30.0%
ACATAGCATACAATCTTTAC+AGG + tig0002658:13550-13569 None:intergenic 30.0%
! ACCTGTACTACATTGTTATT+GGG + tig0002658:13575-13594 None:intergenic 30.0%
AACCTGTACTACATTGTTAT+TGG + tig0002658:13576-13595 None:intergenic 30.0%
AATAACAATGTAGTACAGGT+TGG - tig0002658:13575-13594 Msa1338810:CDS 30.0%
! TAAGTTCCATCCAGTTTTTA+TGG - tig0002658:13721-13740 Msa1338810:five_prime_UTR 30.0%
GACAGCGAAAATCAGAAATA+TGG - tig0002658:11107-11126 Msa1338810:three_prime_UTR 35.0%
ATCAGAAATATGGCGTTACA+AGG - tig0002658:11117-11136 Msa1338810:three_prime_UTR 35.0%
!! AGGATTAAGTACTGTTTCTG+TGG - tig0002658:11137-11156 Msa1338810:three_prime_UTR 35.0%
!! ATTAAGTACTGTTTCTGTGG+CGG - tig0002658:11140-11159 Msa1338810:three_prime_UTR 35.0%
CGAACAAGATTAGAAATGGA+AGG + tig0002658:11183-11202 None:intergenic 35.0%
CCAAGACATAAACTTGAAGA+AGG + tig0002658:11210-11229 None:intergenic 35.0%
! CCTTCTTCAAGTTTATGTCT+TGG - tig0002658:11207-11226 Msa1338810:three_prime_UTR 35.0%
! TCTTCAAGTTTATGTCTTGG+CGG - tig0002658:11210-11229 Msa1338810:three_prime_UTR 35.0%
CAAGTTTATAACGGCGTTTA+TGG - tig0002658:11300-11319 Msa1338810:three_prime_UTR 35.0%
ACAGAAATTGATTGAGGAGA+AGG + tig0002658:11367-11386 None:intergenic 35.0%
TAAATATGACCAATGGGAGT+AGG + tig0002658:11700-11719 None:intergenic 35.0%
! TCTGGTCCAAATTTTGAATC+AGG + tig0002658:11762-11781 None:intergenic 35.0%
!! GTCACAAAAGTTGATGTATC+TGG + tig0002658:11780-11799 None:intergenic 35.0%
! CTTTTAAGCTGCAACTGTAT+AGG + tig0002658:11932-11951 None:intergenic 35.0%
! AGTTGCAGCTTAAAAGCTTT+TGG - tig0002658:11936-11955 Msa1338810:intron 35.0%
!!! TTTTTTTACGTCATTGGGTC+AGG - tig0002658:12109-12128 Msa1338810:intron 35.0%
!! TTTGACAGGACTTGTTTTCA+AGG - tig0002658:12330-12349 Msa1338810:intron 35.0%
TAAGGTAGCCATAGCATATA+TGG - tig0002658:12593-12612 Msa1338810:CDS 35.0%
AACATATCCAACAACCTAGT+GGG - tig0002658:12790-12809 Msa1338810:intron 35.0%
ATAAGTGCAATCATGATAGG+AGG + tig0002658:12863-12882 None:intergenic 35.0%
GAGATAAGTGCAATCATGAT+AGG + tig0002658:12866-12885 None:intergenic 35.0%
TTATTGTCACCAATACCGAT+TGG - tig0002658:13039-13058 Msa1338810:intron 35.0%
AACTTACTTTGCTTGCGTTA+TGG - tig0002658:13130-13149 Msa1338810:intron 35.0%
! GGTCTTTTTGTGATATTTGC+CGG - tig0002658:13156-13175 Msa1338810:intron 35.0%
! TTTTTGTGATATTTGCCGGA+AGG - tig0002658:13160-13179 Msa1338810:intron 35.0%
AATATCAGGGAATTTATGCG+GGG + tig0002658:13253-13272 None:intergenic 35.0%
CAATATCAGGGAATTTATGC+GGG + tig0002658:13254-13273 None:intergenic 35.0%
CCAATATCAGGGAATTTATG+CGG + tig0002658:13255-13274 None:intergenic 35.0%
GAGAGATTTGAACGTGAAAA+CGG + tig0002658:13316-13335 None:intergenic 35.0%
TTGTTCCAGTTTCTCAATCA+AGG + tig0002658:13358-13377 None:intergenic 35.0%
ACCCAATAACAATGTAGTAC+AGG - tig0002658:13571-13590 Msa1338810:CDS 35.0%
CATATATACTTACAGTGAGC+AGG + tig0002658:13689-13708 None:intergenic 35.0%
! ATTTCTGATTTTCGCTGTCG+AGG + tig0002658:11106-11125 None:intergenic 40.0%
TGGCGGTTTCAATATCTGTA+AGG - tig0002658:11157-11176 Msa1338810:three_prime_UTR 40.0%
CAATTCTGATTCTCGGAGAA+GGG + tig0002658:11242-11261 None:intergenic 40.0%
CTTCTCCGAGAATCAGAATT+GGG - tig0002658:11241-11260 Msa1338810:three_prime_UTR 40.0%
!! CGCCGTTATAAACTTGTTGT+TGG + tig0002658:11296-11315 None:intergenic 40.0%
TTTGACATCTTCGGCTTCAA+CGG + tig0002658:11334-11353 None:intergenic 40.0%
GAGTACCTCTTTGACATCTT+CGG + tig0002658:11343-11362 None:intergenic 40.0%
TCAACTATACCTACTCCCAT+TGG - tig0002658:11688-11707 Msa1338810:intron 40.0%
! TATATCGTACCGATCAGGAT+TGG - tig0002658:12000-12019 Msa1338810:intron 40.0%
TTTGCTTGAGCGTATCACTT+AGG + tig0002658:12081-12100 None:intergenic 40.0%
!! ACAGGACTTGTTTTCAAGGA+AGG - tig0002658:12334-12353 Msa1338810:intron 40.0%
AGATGTCCGAGAAGAAGAAT+GGG + tig0002658:12517-12536 None:intergenic 40.0%
! GCTAGAAAGAATTTGGGTTC+TGG + tig0002658:12765-12784 None:intergenic 40.0%
TGCAGGGCTAGAAAGAATTT+GGG + tig0002658:12771-12790 None:intergenic 40.0%
TTGCAGGGCTAGAAAGAATT+TGG + tig0002658:12772-12791 None:intergenic 40.0%
AGGTTGTTGGATATGTTGCA+GGG + tig0002658:12787-12806 None:intergenic 40.0%
TAGGTTGTTGGATATGTTGC+AGG + tig0002658:12788-12807 None:intergenic 40.0%
CAACATATCCAACAACCTAG+TGG - tig0002658:12789-12808 Msa1338810:intron 40.0%
ACATATCCAACAACCTAGTG+GGG - tig0002658:12791-12810 Msa1338810:intron 40.0%
TTTAAGAGTCAAGAGGACGA+TGG + tig0002658:12958-12977 None:intergenic 40.0%
ATCCACACTCACTTCTTGAT+CGG + tig0002658:13017-13036 None:intergenic 40.0%
ACAAATGGACCAATCGGTAT+TGG + tig0002658:13051-13070 None:intergenic 40.0%
! AAATTTGCAGTCCGGTTTGA+TGG - tig0002658:13095-13114 Msa1338810:intron 40.0%
TACTTTGCTTGCGTTATGGA+TGG - tig0002658:13134-13153 Msa1338810:intron 40.0%
ACTTTGCTTGCGTTATGGAT+GGG - tig0002658:13135-13154 Msa1338810:intron 40.0%
CCGCATAAATTCCCTGATAT+TGG - tig0002658:13252-13271 Msa1338810:intron 40.0%
! AGGCTTTCTTTTCGTCATCA+CGG + tig0002658:13338-13357 None:intergenic 40.0%
GAAAGCCTTGATTGAGAAAC+TGG - tig0002658:13350-13369 Msa1338810:intron 40.0%
TCTTATATGAGAACTGCAGG+CGG + tig0002658:13492-13511 None:intergenic 40.0%
CTCTCTTATATGAGAACTGC+AGG + tig0002658:13495-13514 None:intergenic 40.0%
GCAGTTCTCATATAAGAGAG+AGG - tig0002658:13495-13514 Msa1338810:CDS 40.0%
ACGCTTCCATAAAAACTGGA+TGG + tig0002658:13730-13749 None:intergenic 40.0%
CAACACGCTTCCATAAAAAC+TGG + tig0002658:13734-13753 None:intergenic 40.0%
!! CAGTTTTTATGGAAGCGTGT+TGG - tig0002658:13732-13751 Msa1338810:five_prime_UTR 40.0%
CAAGTTTATGTCTTGGCGGT+CGG - tig0002658:11214-11233 Msa1338810:three_prime_UTR 45.0%
AAGTTTATGTCTTGGCGGTC+GGG - tig0002658:11215-11234 Msa1338810:three_prime_UTR 45.0%
CCAATTCTGATTCTCGGAGA+AGG + tig0002658:11243-11262 None:intergenic 45.0%
CCTTCTCCGAGAATCAGAAT+TGG - tig0002658:11240-11259 Msa1338810:three_prime_UTR 45.0%
TCCGAGAATCAGAATTGGGT+CGG - tig0002658:11245-11264 Msa1338810:three_prime_UTR 45.0%
ACCGACCCAATTCTGATTCT+CGG + tig0002658:11249-11268 None:intergenic 45.0%
GAATCAGAATTGGGTCGGTA+CGG - tig0002658:11250-11269 Msa1338810:three_prime_UTR 45.0%
TGAAGCCGAAGATGTCAAAG+AGG - tig0002658:11335-11354 Msa1338810:three_prime_UTR 45.0%
AGCCTGACTCTACTCGAATT+GGG + tig0002658:11586-11605 None:intergenic 45.0%
TAGCCTGACTCTACTCGAAT+TGG + tig0002658:11587-11606 None:intergenic 45.0%
CACACTACACTGTGTTTGCA+GGG + tig0002658:11892-11911 None:intergenic 45.0%
ACACACTACACTGTGTTTGC+AGG + tig0002658:11893-11912 None:intergenic 45.0%
TGCAATGCTAACTATGCCCA+TGG - tig0002658:11972-11991 Msa1338810:intron 45.0%
GGTACGATATAACCTGCCAT+GGG + tig0002658:11991-12010 None:intergenic 45.0%
! CAGGTTATATCGTACCGATC+AGG - tig0002658:11995-12014 Msa1338810:intron 45.0%
CAGCTGTTACCAATCCTGAT+CGG + tig0002658:12012-12031 None:intergenic 45.0%
! ATCAGGATTGGTAACAGCTG+CGG - tig0002658:12012-12031 Msa1338810:intron 45.0%
! TTTTACGTCATTGGGTCAGG+TGG - tig0002658:12112-12131 Msa1338810:intron 45.0%
TTTACGTCATTGGGTCAGGT+GGG - tig0002658:12113-12132 Msa1338810:intron 45.0%
! TTTATTAGCCGGTTGGCCAA+GGG + tig0002658:12245-12264 None:intergenic 45.0%
!! TTTTATTAGCCGGTTGGCCA+AGG + tig0002658:12246-12265 None:intergenic 45.0%
! TTGATAACCCATCAGCTGTC+TGG - tig0002658:12284-12303 Msa1338810:CDS 45.0%
CCTGTCAAAGCAGCAAAAAG+AGG + tig0002658:12319-12338 None:intergenic 45.0%
!!! CCTCTTTTTGCTGCTTTGAC+AGG - tig0002658:12316-12335 Msa1338810:intron 45.0%
CTTGAAACAGGACTCTGCTA+CGG - tig0002658:12457-12476 Msa1338810:CDS 45.0%
CAGATGTCCGAGAAGAAGAA+TGG + tig0002658:12518-12537 None:intergenic 45.0%
CATTCTTCTTCTCGGACATC+TGG - tig0002658:12516-12535 Msa1338810:CDS 45.0%
GGAGGCTGTTACTAGCAATA+AGG + tig0002658:12845-12864 None:intergenic 45.0%
AGAGGACGATGGAAAATCCA+TGG + tig0002658:12947-12966 None:intergenic 45.0%
CGGTGAAGGTAAACGAAATG+CGG + tig0002658:12997-13016 None:intergenic 45.0%
ACTCACTTCTTGATCGGTGA+AGG + tig0002658:13011-13030 None:intergenic 45.0%
GAAATTCACTCAGCCCATCA+AGG - tig0002658:13182-13201 Msa1338810:intron 45.0%
!!! TTTTATAATTTAATTAAGAT+TGG + tig0002658:13624-13643 None:intergenic 5.0%
GACCCAATTCGAGTAGAGTC+AGG - tig0002658:11581-11600 Msa1338810:CDS 50.0%
ATGCTAACTATGCCCATGGC+AGG - tig0002658:11976-11995 Msa1338810:intron 50.0%
CGGTACGATATAACCTGCCA+TGG + tig0002658:11992-12011 None:intergenic 50.0%
ACTTAGGTCACCGGGCAAAT+AGG + tig0002658:12065-12084 None:intergenic 50.0%
AGCGTATCACTTAGGTCACC+GGG + tig0002658:12073-12092 None:intergenic 50.0%
GAGCGTATCACTTAGGTCAC+CGG + tig0002658:12074-12093 None:intergenic 50.0%
AGCGCACTCTGCAAGCATTA+TGG - tig0002658:12182-12201 Msa1338810:intron 50.0%
GCGCACTCTGCAAGCATTAT+GGG - tig0002658:12183-12202 Msa1338810:intron 50.0%
CGCACTCTGCAAGCATTATG+GGG - tig0002658:12184-12203 Msa1338810:intron 50.0%
TATCCAACAACCTAGTGGGG+TGG - tig0002658:12794-12813 Msa1338810:intron 50.0%
CACCGATCAAGAAGTGAGTG+TGG - tig0002658:13012-13031 Msa1338810:intron 50.0%
AGTTCCGTCGTCCATCAAAC+CGG + tig0002658:13109-13128 None:intergenic 50.0%
GGGCTGAGTGAATTTCCTTC+CGG + tig0002658:13178-13197 None:intergenic 50.0%
TACCAGCTCCAATACACCCT+AGG - tig0002658:13399-13418 Msa1338810:intron 50.0%
ACCAGCTCCAATACACCCTA+GGG - tig0002658:13400-13419 Msa1338810:intron 50.0%
TGGGTCGGTACGGTGTAAAG+CGG - tig0002658:11260-11279 Msa1338810:three_prime_UTR 55.0%
ATAACGGCGTTTATGGCCCC+TGG - tig0002658:11307-11326 Msa1338810:three_prime_UTR 55.0%
TCTTCGGCTTCAACGGTCCA+GGG + tig0002658:11327-11346 None:intergenic 55.0%
ATCTTCGGCTTCAACGGTCC+AGG + tig0002658:11328-11347 None:intergenic 55.0%
TAGGTCACCGGGCAAATAGG+CGG + tig0002658:12062-12081 None:intergenic 55.0%
! GTCATTGGGTCAGGTGGGTT+GGG - tig0002658:12118-12137 Msa1338810:intron 55.0%
CTGCAAGCATTATGGGGCCT+CGG - tig0002658:12190-12209 Msa1338810:intron 55.0%
TGCAAGCATTATGGGGCCTC+GGG - tig0002658:12191-12210 Msa1338810:intron 55.0%
GCTGCAACCTACATCACCCT+TGG - tig0002658:12226-12245 Msa1338810:intron 55.0%
CTACATCACCCTTGGCCAAC+CGG - tig0002658:12234-12253 Msa1338810:intron 55.0%
CGACAAGCCAGACAGCTGAT+GGG + tig0002658:12294-12313 None:intergenic 55.0%
! CCATCAGCTGTCTGGCTTGT+CGG - tig0002658:12292-12311 Msa1338810:CDS 55.0%
TGCTACGGCAAGCTAGAAGC+TGG - tig0002658:12472-12491 Msa1338810:CDS 55.0%
TCATCTGCAGCCCTGCAGAT+TGG + tig0002658:12821-12840 None:intergenic 55.0%
! CAGTCCGGTTTGATGGACGA+CGG - tig0002658:13102-13121 Msa1338810:intron 55.0%
CCAGCTCCAATACACCCTAG+GGG - tig0002658:13401-13420 Msa1338810:intron 55.0%
AGTCCACCCCTAGGGTGTAT+TGG + tig0002658:13410-13429 None:intergenic 55.0%
GTTCAAGGAGTCCACCCCTA+GGG + tig0002658:13418-13437 None:intergenic 55.0%
AGTTCAAGGAGTCCACCCCT+AGG + tig0002658:13419-13438 None:intergenic 55.0%
! GGTGGACTCCTTGAACTCGT+AGG - tig0002658:13422-13441 Msa1338810:intron 55.0%
GTCGGTACGGTGTAAAGCGG+CGG - tig0002658:11263-11282 Msa1338810:three_prime_UTR 60.0%
TCGGTACGGTGTAAAGCGGC+GGG - tig0002658:11264-11283 Msa1338810:three_prime_UTR 60.0%
CTTCGGCTTCAACGGTCCAG+GGG + tig0002658:11326-11345 None:intergenic 60.0%
GCATCTGCCGCCTATTTGCC+CGG - tig0002658:12052-12071 Msa1338810:intron 60.0%
CGTCATTGGGTCAGGTGGGT+TGG - tig0002658:12117-12136 Msa1338810:intron 60.0%
GCAAGCATTATGGGGCCTCG+GGG - tig0002658:12192-12211 Msa1338810:intron 60.0%
TTATGGGGCCTCGGGGTTCT+TGG - tig0002658:12199-12218 Msa1338810:intron 60.0%
CAGCTGATCCAAGAACCCCG+AGG + tig0002658:12210-12229 None:intergenic 60.0%
! CGGTTGGCCAAGGGTGATGT+AGG + tig0002658:12236-12255 None:intergenic 60.0%
CCGACAAGCCAGACAGCTGA+TGG + tig0002658:12295-12314 None:intergenic 60.0%
GGTCCACCCCACTAGGTTGT+TGG + tig0002658:12800-12819 None:intergenic 60.0%
! GCAGATTGGTCCACCCCACT+AGG + tig0002658:12807-12826 None:intergenic 60.0%
AGTGGGGTGGACCAATCTGC+AGG - tig0002658:12807-12826 Msa1338810:intron 60.0%
GTGGGGTGGACCAATCTGCA+GGG - tig0002658:12808-12827 Msa1338810:intron 60.0%
CCCCTAGGGTGTATTGGAGC+TGG + tig0002658:13404-13423 None:intergenic 60.0%
GCTCCAATACACCCTAGGGG+TGG - tig0002658:13404-13423 Msa1338810:intron 60.0%
Chromosome Type Strat End Strand Name
tig0002658 gene 11014 13765 11014 ID=Msa1338810;Name=Msa1338810
tig0002658 mRNA 11014 13765 11014 ID=Msa1338810-mRNA-1;Parent=Msa1338810;Name=Msa1338810-mRNA-1;_AED=0.15;_eAED=0.15;_QI=112|1|1|1|1|1|5|370|286
tig0002658 exon 11014 11485 11014 ID=Msa1338810-mRNA-1:exon:1821;Parent=Msa1338810-mRNA-1
tig0002658 exon 11576 11674 11576 ID=Msa1338810-mRNA-1:exon:1820;Parent=Msa1338810-mRNA-1
tig0002658 exon 12242 12312 12242 ID=Msa1338810-mRNA-1:exon:1819;Parent=Msa1338810-mRNA-1
tig0002658 exon 12424 12781 12424 ID=Msa1338810-mRNA-1:exon:1818;Parent=Msa1338810-mRNA-1
tig0002658 exon 13423 13765 13423 ID=Msa1338810-mRNA-1:exon:1817;Parent=Msa1338810-mRNA-1
tig0002658 five_prime_UTR 13654 13765 13654 ID=Msa1338810-mRNA-1:five_prime_utr;Parent=Msa1338810-mRNA-1
tig0002658 CDS 13423 13653 13423 ID=Msa1338810-mRNA-1:cds;Parent=Msa1338810-mRNA-1
tig0002658 CDS 12424 12781 12424 ID=Msa1338810-mRNA-1:cds;Parent=Msa1338810-mRNA-1
tig0002658 CDS 12242 12312 12242 ID=Msa1338810-mRNA-1:cds;Parent=Msa1338810-mRNA-1
tig0002658 CDS 11576 11674 11576 ID=Msa1338810-mRNA-1:cds;Parent=Msa1338810-mRNA-1
tig0002658 CDS 11384 11485 11384 ID=Msa1338810-mRNA-1:cds;Parent=Msa1338810-mRNA-1
tig0002658 three_prime_UTR 11014 11383 11014 ID=Msa1338810-mRNA-1:three_prime_utr;Parent=Msa1338810-mRNA-1
Gene Sequence

>Msa1338810

ATGGCGTTACAAGGATTAAGTACTGTTTCTGTGGCGGTTTCAATATCTGTAAGGCCTTCCATTTCTAATCTTGTTCGAATTCCTTCTTCAAGTTTATGTCTTGGCGGTCGGGTCCCTTCTCCGAGAATCAGAATTGGGTCGGTACGGTGTAAAGCGGCGGGAGAAAACCAACAACAAGTTTATAACGGCGTTTATGGCCCCTGGACCGTTGAAGCCGAAGATGTCAAAGAGGTTATATCGTACCGATCAGGATTGGTAACAGCTGCGGCATCGTTCGTCATCGCTGCATCTGCCGCCTATTTGCCCGGTGACCTAAGTGATACGCTCAAGCAAAACATTGATTTTTTTTACGTCATTGGGTCAGGTGGGTTGGGTTTATCATTATTCTTGATTCATATCTATGTGACTGAAATCAAGCGCACTCTGCAAGCATTATGGGGCCTCGGGGTTCTTGGATCAGCTGCAACCTACATCACCCTTGGCCAACCGGCTAATAAAACTTTAATACAGTATGTTATTGATAACCCATCAGCTGTCTGGCTTGTCGGTCCTCTTTTTGCTGCTTTGACAGGACTTGTTTTCAAGGAAGGACTCTGCTACGGCAAGCTAGAAGCTGGAGCACTCACGTTTATTATTCCCATTCTTCTTCTCGGACATCTGTCCGGTTTGATGGACGACGGAACTAAACTTACTTTGCTTGCGTTATGGATGGGTCTTTTTGTGATATTTGCCGGAAGGAAATTCACTCAGCCCATCAAGGATGACATCGGTGACAAGTCCGTTTTCACGTTCAAATCTCTCCGTGATGACGAAAAGAAAGCCTTGATTGAGAAACTGGAACAACAAAAAACTCAGTATTAA

Protein sequence

>Msa1338810

MALQGLSTVSVAVSISVRPSISNLVRIPSSSLCLGGRVPSPRIRIGSVRCKAAGENQQQVYNGVYGPWTVEAEDVKEVISYRSGLVTAAASFVIAASAAYLPGDLSDTLKQNIDFFYVIGSGGLGLSLFLIHIYVTEIKRTLQALWGLGVLGSAATYITLGQPANKTLIQYVIDNPSAVWLVGPLFAALTGLVFKEGLCYGKLEAGALTFIIPILLLGHLSGLMDDGTKLTLLALWMGLFVIFAGRKFTQPIKDDIGDKSVFTFKSLRDDEKKALIEKLEQQKTQY*