AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0276800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276800 MtrunA17_Chr2g0289301 94.637 317 17 0 1 317 1 317 0.0 572
Msa0276800 MtrunA17_Chr2g0289291 84.688 320 42 2 1 317 1 316 6.47e-178 494
Msa0276800 MtrunA17_Chr1g0202631 73.649 148 27 2 51 198 7 142 5.89e-63 201
Msa0276800 MtrunA17_Chr5g0410791 46.415 265 130 3 62 315 91 354 3.33e-60 196
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276800 AT4G04020.1 69.742 271 72 3 52 315 49 316 7.77e-128 368
Msa0276800 AT4G22240.1 68.100 279 77 4 41 315 38 308 2.17e-126 363
Msa0276800 AT2G35490.1 48.425 254 128 3 62 315 124 374 1.17e-75 237

Find 95 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTGATAAAGGAGTGAAAT+AGG 0.146925 2_3:-9078494 None:intergenic
GATGCCTTGAGTTTGCTTAA+TGG 0.209190 2_3:+9078995 Msa0276800:CDS
TGAGTTTGCTTAATGGAAAA+TGG 0.213813 2_3:+9079002 Msa0276800:CDS
TGGACTTCGAACTTCAAATT+TGG 0.214207 2_3:-9079810 None:intergenic
TGAGCGTTGTCGTTGGAAAT+TGG 0.261986 2_3:-9080586 None:intergenic
TCTCAATTCAACAAAGAAAA+TGG 0.263633 2_3:+9078571 Msa0276800:exon
CAAAACTCTGTTCTGTTTGC+TGG 0.306297 2_3:+9079755 Msa0276800:CDS
CGCAGGTATACATCCTTTGC+CGG 0.306305 2_3:+9079644 Msa0276800:intron
TGAGGCGGGCGGTGTATGTT+CGG 0.309347 2_3:+9078741 Msa0276800:CDS
AAATTTGGCATTGGTACTAA+TGG 0.316715 2_3:-9079795 None:intergenic
GTGGAGTTGAGAGAGGTTAC+TGG 0.345185 2_3:-9078638 None:intergenic
CAGCAAACAGAACAGAGTTT+TGG 0.351113 2_3:-9079754 None:intergenic
AGATTTATAGAGAGTGATAA+AGG 0.365973 2_3:-9078505 None:intergenic
TCGAAGTCCAAATCGTTTGC+AGG 0.366646 2_3:+9079823 Msa0276800:CDS
GAGCGTTGTCGTTGGAAATT+GGG 0.370330 2_3:-9080585 None:intergenic
GGGCAAACCTGCAAACGATT+TGG 0.373512 2_3:-9079830 None:intergenic
CGACCGATGAGGCAGTGTTT+TGG 0.375094 2_3:-9080528 None:intergenic
TTCTGCTGGCGTCGCGGTTG+CGG 0.388728 2_3:+9078799 Msa0276800:CDS
AGTGATAAAGGAGTGAAATA+GGG 0.428983 2_3:-9078493 None:intergenic
GAGGCGGGCGGTGTATGTTC+GGG 0.431419 2_3:+9078742 Msa0276800:CDS
GATCTTCAACGGAGGCTGAT+TGG 0.433255 2_3:-9080563 None:intergenic
TGGGGTCCAGAGCCTTCTGC+TGG 0.436696 2_3:+9078785 Msa0276800:CDS
AAGTTTGAGGAAGGTGTCAT+AGG 0.451543 2_3:+9080406 Msa0276800:CDS
TTGGTTGAGGTTTGAGAGAG+AGG 0.455247 2_3:-9078594 None:intergenic
GGGTGTTTGTGTGGAGAAGT+TGG 0.455512 2_3:-9078613 None:intergenic
TGTTATTCAGATCAAGTTTG+AGG 0.467097 2_3:+9080393 Msa0276800:intron
TTGTGTGGAGAAGTTGGTTG+AGG 0.470556 2_3:-9078607 None:intergenic
GGCATCAGTAGAAGCGGGTG+TGG 0.486342 2_3:-9078978 None:intergenic
CCAACGACAACGCTCAATCA+TGG 0.486944 2_3:+9080593 Msa0276800:CDS
TAGTGTGTTTGTTCTTATCA+AGG 0.491603 2_3:+9080669 Msa0276800:CDS
TGAAGGTGTGGAGTTGAGAG+AGG 0.491712 2_3:-9078645 None:intergenic
CGAAAGCAATGGAAATAAAC+CGG 0.492898 2_3:-9079663 None:intergenic
AGAAAGTGACGGATAGTGAG+AGG 0.496240 2_3:+9078837 Msa0276800:CDS
GCGACGCCAGCAGAAGGCTC+TGG 0.497720 2_3:-9078791 None:intergenic
AAACCATCGGCCAACACAAT+CGG 0.499127 2_3:-9078719 None:intergenic
AAACCGAACGTGATGGTCGA+TGG 0.504270 2_3:-9078674 None:intergenic
GTTGAGAGAGGTTACTGGAA+GGG 0.505605 2_3:-9078633 None:intergenic
TCGAACTTCAAATTTGGCAT+TGG 0.506203 2_3:-9079804 None:intergenic
TGCTGGCGTCGCGGTTGCGG+AGG 0.508923 2_3:+9078802 Msa0276800:CDS
ATGAAGAACTACGCGTCTCA+AGG 0.510954 2_3:+9080635 Msa0276800:CDS
TATGCGAACAATTGAACACT+TGG 0.512491 2_3:-9080739 None:intergenic
TCTCCATCGACCATCACGTT+CGG 0.514451 2_3:+9078671 Msa0276800:CDS
TTGTGTTGGCCGATGGTTTG+AGG 0.521688 2_3:+9078723 Msa0276800:CDS
AGACCGATTGTGTTGGCCGA+TGG 0.523427 2_3:+9078716 Msa0276800:CDS
TGTCCAAAACACTGCCTCAT+CGG 0.527517 2_3:+9080525 Msa0276800:CDS
ATTTCTTCAACTGTAAGTAA+TGG 0.527551 2_3:-9079698 None:intergenic
GTTGGCCGATGGTTTGAGGC+GGG 0.530141 2_3:+9078727 Msa0276800:CDS
TAATACAAATGATGATGAGT+GGG 0.532459 2_3:+9078766 Msa0276800:CDS
GGCATTGGTACTAATGGAGG+TGG 0.532928 2_3:-9079789 None:intergenic
ATTGATCTCTCGCCTTTCAA+AGG 0.534065 2_3:+9080490 Msa0276800:CDS
TGAAGAACTACGCGTCTCAA+GGG 0.546646 2_3:+9080636 Msa0276800:CDS
CACCGCCCGCCTCAAACCAT+CGG 0.549599 2_3:-9078732 None:intergenic
TGAGAGGGAGAAGCTGAAGA+AGG 0.553126 2_3:+9078853 Msa0276800:CDS
GGAGAAGCTGAAGAAGGCGT+TGG 0.553210 2_3:+9078859 Msa0276800:CDS
ATTCAGATCAAGTTTGAGGA+AGG 0.553801 2_3:+9080397 Msa0276800:intron
TATTCATAAATAAGCAACAC+TGG 0.554909 2_3:+9080760 Msa0276800:three_prime_UTR
GCAACCGCGACGCCAGCAGA+AGG 0.556346 2_3:-9078797 None:intergenic
AGACGCGTAGTTCTTCATCA+AGG 0.563282 2_3:-9080630 None:intergenic
CTCAAGGCATCAGTAGAAGC+GGG 0.563935 2_3:-9078983 None:intergenic
CCATGATTGAGCGTTGTCGT+TGG 0.564294 2_3:-9080593 None:intergenic
TTGGAAATTGGGATCTTCAA+CGG 0.565875 2_3:-9080574 None:intergenic
GTGTTTGTTCTTATCAAGGA+AGG 0.566267 2_3:+9080673 Msa0276800:CDS
GAAATTGGGATCTTCAACGG+AGG 0.567708 2_3:-9080571 None:intergenic
GGAGTGAAATAGGGAAGCGG+TGG 0.568288 2_3:-9078484 None:intergenic
CTACGCGTCTCAAGGGGTGA+TGG 0.568415 2_3:+9080643 Msa0276800:CDS
TTTGGCATTGGTACTAATGG+AGG 0.570777 2_3:-9079792 None:intergenic
AAGCTGAAGAAGGCGTTGGT+TGG 0.574482 2_3:+9078863 Msa0276800:CDS
CAATGGAAATAAACCGGCAA+AGG 0.577508 2_3:-9079657 None:intergenic
GAAGTAAGTATGCCTTTGAA+AGG 0.579660 2_3:-9080502 None:intergenic
TTACTGGAAGGGTGTTTGTG+TGG 0.583482 2_3:-9078622 None:intergenic
AGTAGTCCGCTCGAAAGCAA+TGG 0.587994 2_3:-9079674 None:intergenic
AGTTGAGAGAGGTTACTGGA+AGG 0.592004 2_3:-9078634 None:intergenic
TCTAACGAGTCTGTGAGTTG+TGG 0.593065 2_3:-9080433 None:intergenic
AAAGGAGTGAAATAGGGAAG+CGG 0.600876 2_3:-9078487 None:intergenic
CGATGGAGAAGTTGAAGGTG+TGG 0.601344 2_3:-9078657 None:intergenic
GCTCAGAAAACCGAACGTGA+TGG 0.601660 2_3:-9078681 None:intergenic
CGCGTCTCAAGGGGTGATGG+TGG 0.610242 2_3:+9080646 Msa0276800:CDS
ACTCAAGGCATCAGTAGAAG+CGG 0.610668 2_3:-9078984 None:intergenic
CTAATGGAGGTGGTAGACAA+TGG 0.616798 2_3:-9079779 None:intergenic
GCATCAGTAGAAGCGGGTGT+GGG 0.625232 2_3:-9078977 None:intergenic
GGCCGATGGTTTGAGGCGGG+CGG 0.626348 2_3:+9078730 Msa0276800:CDS
CTAATACAAATGATGATGAG+TGG 0.629749 2_3:+9078765 Msa0276800:CDS
ATGGTCGATGGAGAAGTTGA+AGG 0.631836 2_3:-9078662 None:intergenic
GAAAGTGACGGATAGTGAGA+GGG 0.635117 2_3:+9078838 Msa0276800:CDS
GAGTGAAATAGGGAAGCGGT+GGG 0.635678 2_3:-9078483 None:intergenic
TGTCAGAAGACCGATTGTGT+TGG 0.635862 2_3:+9078709 Msa0276800:CDS
TTATTTCCATTGCTTTCGAG+CGG 0.638687 2_3:+9079668 Msa0276800:CDS
GAAGAACTACGCGTCTCAAG+GGG 0.644186 2_3:+9080637 Msa0276800:CDS
AGAGCCTTCTGCTGGCGTCG+CGG 0.645840 2_3:+9078793 Msa0276800:CDS
AATTGTTTGCACGACCGATG+AGG 0.652679 2_3:-9080539 None:intergenic
GAAAGAGACTGAGAAAGTGA+CGG 0.653391 2_3:+9078826 Msa0276800:CDS
TGTTGGCCGATGGTTTGAGG+CGG 0.676008 2_3:+9078726 Msa0276800:CDS
GTTAGAGATACCAGAAAACG+TGG 0.687929 2_3:+9080450 Msa0276800:CDS
AATACAAATGATGATGAGTG+GGG 0.724716 2_3:+9078767 Msa0276800:CDS
TCAAATGTAAGAATATACAG+CGG 0.731283 2_3:-9080844 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTAATTTTAATATT+TGG + chr2_3:9079042-9079061 Msa0276800:intron 0.0%
!!! CATTTTATAAAAAAAAATAC+AGG - chr2_3:9079361-9079380 None:intergenic 10.0%
!!! AACATTTTTTATATCTAAAA+TGG - chr2_3:9080895-9080914 None:intergenic 10.0%
!! TGATGGTTTAAAAATTAAAT+TGG - chr2_3:9079160-9079179 None:intergenic 15.0%
!! AAAAATACTAATAGAAAAGA+AGG - chr2_3:9079861-9079880 None:intergenic 15.0%
!! ACTTATTACTAAACTATAAA+AGG - chr2_3:9080047-9080066 None:intergenic 15.0%
!!! AGAAATTTTAAATATCAGTT+AGG + chr2_3:9080217-9080236 Msa0276800:intron 15.0%
!! ATGTTAGATGAATATAGTAA+TGG + chr2_3:9079096-9079115 Msa0276800:intron 20.0%
!! AAATAGTTCAAATTTCAAAC+AGG - chr2_3:9079133-9079152 None:intergenic 20.0%
!! AAATAAAAAATATGGAGATG+CGG + chr2_3:9079231-9079250 Msa0276800:intron 20.0%
!! TCAATCAAAGTCAAATTATT+TGG - chr2_3:9079990-9080009 None:intergenic 20.0%
!! TGTCAAATATTAGTATAATG+AGG + chr2_3:9080119-9080138 Msa0276800:intron 20.0%
! AGATTTATAGAGAGTGATAA+AGG - chr2_3:9078508-9078527 None:intergenic 25.0%
! TCTCAATTCAACAAAGAAAA+TGG + chr2_3:9078571-9078590 Msa0276800:exon 25.0%
!! TAATACAAATGATGATGAGT+GGG + chr2_3:9078766-9078785 Msa0276800:CDS 25.0%
! TCAAAATTCATTCAACATGA+TGG - chr2_3:9079177-9079196 None:intergenic 25.0%
! AATAAAAAATATGGAGATGC+GGG + chr2_3:9079232-9079251 Msa0276800:intron 25.0%
!! CATATTTGTTGAAACATGAA+AGG - chr2_3:9079329-9079348 None:intergenic 25.0%
! ATGTTTCAACAAATATGAGT+TGG + chr2_3:9079332-9079351 Msa0276800:intron 25.0%
!!! CATATTTTTATTGCTAGCAA+TGG + chr2_3:9079395-9079414 Msa0276800:intron 25.0%
! ATTTCTTCAACTGTAAGTAA+TGG - chr2_3:9079701-9079720 None:intergenic 25.0%
! CTAAACTATAAAAGGAAAAC+AGG - chr2_3:9080039-9080058 None:intergenic 25.0%
! TATCAGTTAGGTTAGTATTA+TGG + chr2_3:9080229-9080248 Msa0276800:intron 25.0%
! TATTCATAAATAAGCAACAC+TGG + chr2_3:9080760-9080779 Msa0276800:three_prime_UTR 25.0%
! TCAAATGTAAGAATATACAG+CGG - chr2_3:9080847-9080866 None:intergenic 25.0%
AGTGATAAAGGAGTGAAATA+GGG - chr2_3:9078496-9078515 None:intergenic 30.0%
! CTAATACAAATGATGATGAG+TGG + chr2_3:9078765-9078784 Msa0276800:CDS 30.0%
! AATACAAATGATGATGAGTG+GGG + chr2_3:9078767-9078786 Msa0276800:CDS 30.0%
! TTTTCCATTAAGCAAACTCA+AGG - chr2_3:9079002-9079021 None:intergenic 30.0%
! TGAGTTTGCTTAATGGAAAA+TGG + chr2_3:9079002-9079021 Msa0276800:CDS 30.0%
ATAAAAAATATGGAGATGCG+GGG + chr2_3:9079233-9079252 Msa0276800:intron 30.0%
TAAAATTGCATCACATGTGA+TGG + chr2_3:9079488-9079507 Msa0276800:intron 30.0%
ACAGTGCTAGTTAACAATAA+TGG + chr2_3:9079567-9079586 Msa0276800:intron 30.0%
!! TAAACTCATGGTTTGATTTG+TGG + chr2_3:9079618-9079637 Msa0276800:intron 30.0%
!! AAATTTGGCATTGGTACTAA+TGG - chr2_3:9079798-9079817 None:intergenic 30.0%
TAATAGAAAAGAAGGAGCAA+GGG - chr2_3:9079853-9079872 None:intergenic 30.0%
!! TATTTTTATACTTCACCCTC+CGG + chr2_3:9079874-9079893 Msa0276800:intron 30.0%
CTGATAAACTATGTCAATCA+AGG + chr2_3:9079949-9079968 Msa0276800:intron 30.0%
AACTATAAAAGGAAAACAGG+TGG - chr2_3:9080036-9080055 None:intergenic 30.0%
CCAATAGCTTAAATCATGAT+AGG - chr2_3:9080361-9080380 None:intergenic 30.0%
CCTATCATGATTTAAGCTAT+TGG + chr2_3:9080358-9080377 Msa0276800:intron 30.0%
TGTTATTCAGATCAAGTTTG+AGG + chr2_3:9080393-9080412 Msa0276800:intron 30.0%
TAGTGTGTTTGTTCTTATCA+AGG + chr2_3:9080669-9080688 Msa0276800:CDS 30.0%
GAGTGATAAAGGAGTGAAAT+AGG - chr2_3:9078497-9078516 None:intergenic 35.0%
! AGCAATGGTTTGTGTTTCTA+AGG + chr2_3:9079410-9079429 Msa0276800:intron 35.0%
TTTGTACCTCTTGTTACCAT+TGG - chr2_3:9079514-9079533 None:intergenic 35.0%
TGTCAGAAGCAGATTTATTC+TGG - chr2_3:9079550-9079569 None:intergenic 35.0%
TTCTGCAGCTAATAAACTCA+TGG + chr2_3:9079606-9079625 Msa0276800:intron 35.0%
CGAAAGCAATGGAAATAAAC+CGG - chr2_3:9079666-9079685 None:intergenic 35.0%
TTATTTCCATTGCTTTCGAG+CGG + chr2_3:9079668-9079687 Msa0276800:CDS 35.0%
TCGAACTTCAAATTTGGCAT+TGG - chr2_3:9079807-9079826 None:intergenic 35.0%
TGGACTTCGAACTTCAAATT+TGG - chr2_3:9079813-9079832 None:intergenic 35.0%
CTAATAGAAAAGAAGGAGCA+AGG - chr2_3:9079854-9079873 None:intergenic 35.0%
GTAATCATTTCTCTCCTAAC+CGG - chr2_3:9079896-9079915 None:intergenic 35.0%
GGTTAGGAGAGAAATGATTA+CGG + chr2_3:9079895-9079914 Msa0276800:intron 35.0%
ATTCAGATCAAGTTTGAGGA+AGG + chr2_3:9080397-9080416 Msa0276800:intron 35.0%
! ACCAGAAAACGTGGAATTTT+TGG + chr2_3:9080459-9080478 Msa0276800:CDS 35.0%
! CCAGAAAACGTGGAATTTTT+GGG + chr2_3:9080460-9080479 Msa0276800:CDS 35.0%
! CAGAAAACGTGGAATTTTTG+GGG + chr2_3:9080461-9080480 Msa0276800:CDS 35.0%
GAAGTAAGTATGCCTTTGAA+AGG - chr2_3:9080505-9080524 None:intergenic 35.0%
TTGGAAATTGGGATCTTCAA+CGG - chr2_3:9080577-9080596 None:intergenic 35.0%
GTGTTTGTTCTTATCAAGGA+AGG + chr2_3:9080673-9080692 Msa0276800:CDS 35.0%
TATGCGAACAATTGAACACT+TGG - chr2_3:9080742-9080761 None:intergenic 35.0%
AAAGGAGTGAAATAGGGAAG+CGG - chr2_3:9078490-9078509 None:intergenic 40.0%
GAAAGAGACTGAGAAAGTGA+CGG + chr2_3:9078826-9078845 Msa0276800:CDS 40.0%
!!! CGTTGGTTGGTTCGTTTTAT+GGG + chr2_3:9078876-9078895 Msa0276800:CDS 40.0%
! GATGCCTTGAGTTTGCTTAA+TGG + chr2_3:9078995-9079014 Msa0276800:CDS 40.0%
!! ACATGAAAGGCGTCAACAAT+GGG - chr2_3:9079316-9079335 None:intergenic 40.0%
!! AACATGAAAGGCGTCAACAA+TGG - chr2_3:9079317-9079336 None:intergenic 40.0%
CAATGGAAATAAACCGGCAA+AGG - chr2_3:9079660-9079679 None:intergenic 40.0%
! CAGCAAACAGAACAGAGTTT+TGG - chr2_3:9079757-9079776 None:intergenic 40.0%
CAAAACTCTGTTCTGTTTGC+TGG + chr2_3:9079755-9079774 Msa0276800:CDS 40.0%
!! TTTGGCATTGGTACTAATGG+AGG - chr2_3:9079795-9079814 None:intergenic 40.0%
!! AAGTTTGAGGAAGGTGTCAT+AGG + chr2_3:9080406-9080425 Msa0276800:CDS 40.0%
GTTAGAGATACCAGAAAACG+TGG + chr2_3:9080450-9080469 Msa0276800:CDS 40.0%
! CCCAAAAATTCCACGTTTTC+TGG - chr2_3:9080463-9080482 None:intergenic 40.0%
ATTGATCTCTCGCCTTTCAA+AGG + chr2_3:9080490-9080509 Msa0276800:CDS 40.0%
TTGGTTGAGGTTTGAGAGAG+AGG - chr2_3:9078597-9078616 None:intergenic 45.0%
! TTGTGTGGAGAAGTTGGTTG+AGG - chr2_3:9078610-9078629 None:intergenic 45.0%
!! TTACTGGAAGGGTGTTTGTG+TGG - chr2_3:9078625-9078644 None:intergenic 45.0%
GTTGAGAGAGGTTACTGGAA+GGG - chr2_3:9078636-9078655 None:intergenic 45.0%
AGTTGAGAGAGGTTACTGGA+AGG - chr2_3:9078637-9078656 None:intergenic 45.0%
ATGGTCGATGGAGAAGTTGA+AGG - chr2_3:9078665-9078684 None:intergenic 45.0%
TGTCAGAAGACCGATTGTGT+TGG + chr2_3:9078709-9078728 Msa0276800:CDS 45.0%
AAACCATCGGCCAACACAAT+CGG - chr2_3:9078722-9078741 None:intergenic 45.0%
!! AGAAAGTGACGGATAGTGAG+AGG + chr2_3:9078837-9078856 Msa0276800:CDS 45.0%
!! GAAAGTGACGGATAGTGAGA+GGG + chr2_3:9078838-9078857 Msa0276800:CDS 45.0%
!!! GCGTTGGTTGGTTCGTTTTA+TGG + chr2_3:9078875-9078894 Msa0276800:CDS 45.0%
! TCGTTTTATGGGACTGATCG+TGG + chr2_3:9078887-9078906 Msa0276800:CDS 45.0%
! ACTCAAGGCATCAGTAGAAG+CGG - chr2_3:9078987-9079006 None:intergenic 45.0%
!! CATGAAAGGCGTCAACAATG+GGG - chr2_3:9079315-9079334 None:intergenic 45.0%
TGATGGCCAATGGTAACAAG+AGG + chr2_3:9079505-9079524 Msa0276800:intron 45.0%
CTAATGGAGGTGGTAGACAA+TGG - chr2_3:9079782-9079801 None:intergenic 45.0%
TCGAAGTCCAAATCGTTTGC+AGG + chr2_3:9079823-9079842 Msa0276800:CDS 45.0%
TTATACTTCACCCTCCGGTT+AGG + chr2_3:9079879-9079898 Msa0276800:intron 45.0%
TCATTTCTCTCCTAACCGGA+GGG - chr2_3:9079892-9079911 None:intergenic 45.0%
ATCATTTCTCTCCTAACCGG+AGG - chr2_3:9079893-9079912 None:intergenic 45.0%
TCTAACGAGTCTGTGAGTTG+TGG - chr2_3:9080436-9080455 None:intergenic 45.0%
TGTCCAAAACACTGCCTCAT+CGG + chr2_3:9080525-9080544 Msa0276800:CDS 45.0%
AATTGTTTGCACGACCGATG+AGG - chr2_3:9080542-9080561 None:intergenic 45.0%
GAAATTGGGATCTTCAACGG+AGG - chr2_3:9080574-9080593 None:intergenic 45.0%
! GAGCGTTGTCGTTGGAAATT+GGG - chr2_3:9080588-9080607 None:intergenic 45.0%
! TGAGCGTTGTCGTTGGAAAT+TGG - chr2_3:9080589-9080608 None:intergenic 45.0%
AGACGCGTAGTTCTTCATCA+AGG - chr2_3:9080633-9080652 None:intergenic 45.0%
ATGAAGAACTACGCGTCTCA+AGG + chr2_3:9080635-9080654 Msa0276800:CDS 45.0%
TGAAGAACTACGCGTCTCAA+GGG + chr2_3:9080636-9080655 Msa0276800:CDS 45.0%
!! GAATAAATAAATAAAAAATA+TGG + chr2_3:9079223-9079242 Msa0276800:intron 5.0%
GGGTGTTTGTGTGGAGAAGT+TGG - chr2_3:9078616-9078635 None:intergenic 50.0%
GTGGAGTTGAGAGAGGTTAC+TGG - chr2_3:9078641-9078660 None:intergenic 50.0%
! TGAAGGTGTGGAGTTGAGAG+AGG - chr2_3:9078648-9078667 None:intergenic 50.0%
CGATGGAGAAGTTGAAGGTG+TGG - chr2_3:9078660-9078679 None:intergenic 50.0%
TCTCCATCGACCATCACGTT+CGG + chr2_3:9078671-9078690 Msa0276800:CDS 50.0%
AAACCGAACGTGATGGTCGA+TGG - chr2_3:9078677-9078696 None:intergenic 50.0%
GCTCAGAAAACCGAACGTGA+TGG - chr2_3:9078684-9078703 None:intergenic 50.0%
! TTGTGTTGGCCGATGGTTTG+AGG + chr2_3:9078723-9078742 Msa0276800:CDS 50.0%
TGAGAGGGAGAAGCTGAAGA+AGG + chr2_3:9078853-9078872 Msa0276800:CDS 50.0%
!! AAGCTGAAGAAGGCGTTGGT+TGG + chr2_3:9078863-9078882 Msa0276800:CDS 50.0%
! CTCAAGGCATCAGTAGAAGC+GGG - chr2_3:9078986-9079005 None:intergenic 50.0%
CAATGGGGATGTAGCTCAGA+TGG - chr2_3:9079300-9079319 None:intergenic 50.0%
GCATCACATGTGATGGCCAA+TGG + chr2_3:9079495-9079514 Msa0276800:intron 50.0%
!! GGTTTGATTTGTGGTTCCGC+AGG + chr2_3:9079627-9079646 Msa0276800:intron 50.0%
CGGCAAAGGATGTATACCTG+CGG - chr2_3:9079646-9079665 None:intergenic 50.0%
CGCAGGTATACATCCTTTGC+CGG + chr2_3:9079644-9079663 Msa0276800:intron 50.0%
AGTAGTCCGCTCGAAAGCAA+TGG - chr2_3:9079677-9079696 None:intergenic 50.0%
!! GGCATTGGTACTAATGGAGG+TGG - chr2_3:9079792-9079811 None:intergenic 50.0%
GGGCAAACCTGCAAACGATT+TGG - chr2_3:9079833-9079852 None:intergenic 50.0%
GATCTTCAACGGAGGCTGAT+TGG - chr2_3:9080566-9080585 None:intergenic 50.0%
! CCATGATTGAGCGTTGTCGT+TGG - chr2_3:9080596-9080615 None:intergenic 50.0%
CCAACGACAACGCTCAATCA+TGG + chr2_3:9080593-9080612 Msa0276800:CDS 50.0%
GAAGAACTACGCGTCTCAAG+GGG + chr2_3:9080637-9080656 Msa0276800:CDS 50.0%
GGAGTGAAATAGGGAAGCGG+TGG - chr2_3:9078487-9078506 None:intergenic 55.0%
! AGACCGATTGTGTTGGCCGA+TGG + chr2_3:9078716-9078735 Msa0276800:CDS 55.0%
TGTTGGCCGATGGTTTGAGG+CGG + chr2_3:9078726-9078745 Msa0276800:CDS 55.0%
! GGAGAAGCTGAAGAAGGCGT+TGG + chr2_3:9078859-9078878 Msa0276800:CDS 55.0%
GCATCAGTAGAAGCGGGTGT+GGG - chr2_3:9078980-9078999 None:intergenic 55.0%
! CTTAGCATGCGAGAGGTACG+GGG - chr2_3:9079266-9079285 None:intergenic 55.0%
! GCTTAGCATGCGAGAGGTAC+GGG - chr2_3:9079267-9079286 None:intergenic 55.0%
CGCTTAGCATGCGAGAGGTA+CGG - chr2_3:9079268-9079287 None:intergenic 55.0%
! CGACCGATGAGGCAGTGTTT+TGG - chr2_3:9080531-9080550 None:intergenic 55.0%
! GTTGGCCGATGGTTTGAGGC+GGG + chr2_3:9078727-9078746 Msa0276800:CDS 60.0%
TGAGGCGGGCGGTGTATGTT+CGG + chr2_3:9078741-9078760 Msa0276800:CDS 60.0%
GGCATCAGTAGAAGCGGGTG+TGG - chr2_3:9078981-9079000 None:intergenic 60.0%
CTACGCGTCTCAAGGGGTGA+TGG + chr2_3:9080643-9080662 Msa0276800:CDS 60.0%
CACCGCCCGCCTCAAACCAT+CGG - chr2_3:9078735-9078754 None:intergenic 65.0%
GAGGCGGGCGGTGTATGTTC+GGG + chr2_3:9078742-9078761 Msa0276800:CDS 65.0%
TGGGGTCCAGAGCCTTCTGC+TGG + chr2_3:9078785-9078804 Msa0276800:CDS 65.0%
AGAGCCTTCTGCTGGCGTCG+CGG + chr2_3:9078793-9078812 Msa0276800:CDS 65.0%
TTCTGCTGGCGTCGCGGTTG+CGG + chr2_3:9078799-9078818 Msa0276800:CDS 65.0%
GCGCTCGCTTAGCATGCGAG+AGG - chr2_3:9079273-9079292 None:intergenic 65.0%
! CGCGTCTCAAGGGGTGATGG+TGG + chr2_3:9080646-9080665 Msa0276800:CDS 65.0%
! GGCCGATGGTTTGAGGCGGG+CGG + chr2_3:9078730-9078749 Msa0276800:CDS 70.0%
GCGACGCCAGCAGAAGGCTC+TGG - chr2_3:9078794-9078813 None:intergenic 70.0%
GCAACCGCGACGCCAGCAGA+AGG - chr2_3:9078800-9078819 None:intergenic 70.0%
TGCTGGCGTCGCGGTTGCGG+AGG + chr2_3:9078802-9078821 Msa0276800:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 9078484 9080940 9078484 ID=Msa0276800;Name=Msa0276800
chr2_3 mRNA 9078484 9080940 9078484 ID=Msa0276800-mRNA-1;Parent=Msa0276800;Name=Msa0276800-mRNA-1;_AED=0.01;_eAED=0.01;_QI=106|1|1|1|1|1|3|223|317
chr2_3 exon 9078484 9079032 9078484 ID=Msa0276800-mRNA-1:exon:4118;Parent=Msa0276800-mRNA-1
chr2_3 exon 9079649 9079844 9079649 ID=Msa0276800-mRNA-1:exon:4119;Parent=Msa0276800-mRNA-1
chr2_3 exon 9080403 9080940 9080403 ID=Msa0276800-mRNA-1:exon:4120;Parent=Msa0276800-mRNA-1
chr2_3 five_prime_UTR 9078484 9078589 9078484 ID=Msa0276800-mRNA-1:five_prime_utr;Parent=Msa0276800-mRNA-1
chr2_3 CDS 9078590 9079032 9078590 ID=Msa0276800-mRNA-1:cds;Parent=Msa0276800-mRNA-1
chr2_3 CDS 9079649 9079844 9079649 ID=Msa0276800-mRNA-1:cds;Parent=Msa0276800-mRNA-1
chr2_3 CDS 9080403 9080717 9080403 ID=Msa0276800-mRNA-1:cds;Parent=Msa0276800-mRNA-1
chr2_3 three_prime_UTR 9080718 9080940 9080718 ID=Msa0276800-mRNA-1:three_prime_utr;Parent=Msa0276800-mRNA-1
Gene Sequence

>Msa0276800

ATGGCCTCTCTCTCAAACCTCAACCAACTTCTCCACACAAACACCCTTCCAGTAACCTCTCTCAACTCCACACCTTCAACTTCTCCATCGACCATCACGTTCGGTTTTCTGAGCAAACATGTCAGAAGACCGATTGTGTTGGCCGATGGTTTGAGGCGGGCGGTGTATGTTCGGGCTAATACAAATGATGATGAGTGGGGTCCAGAGCCTTCTGCTGGCGTCGCGGTTGCGGAGGTGAAAGAGACTGAGAAAGTGACGGATAGTGAGAGGGAGAAGCTGAAGAAGGCGTTGGTTGGTTCGTTTTATGGGACTGATCGTGGATTGAAAGCGACGAGTGAAACGAGAGCTGAGATTGTTGAGCTGATTACTCAGCTTGAAGCTAAGAATCCCACACCCGCTTCTACTGATGCCTTGAGTTTGCTTAATGGAAAATGGATTCTTGCGTATACATCCTTTGCCGGTTTATTTCCATTGCTTTCGAGCGGACTACTACCATTACTTACAGTTGAAGAAATATCTCAGACTATTGACTCTGAAAGTTTAACTGTCCAAAACTCTGTTCTGTTTGCTGGTCCATTGTCTACCACCTCCATTAGTACCAATGCCAAATTTGAAGTTCGAAGTCCAAATCGTTTGCAGATCAAGTTTGAGGAAGGTGTCATAGGCACTCCACAACTCACAGACTCGTTAGAGATACCAGAAAACGTGGAATTTTTGGGGCAAAAGATTGATCTCTCGCCTTTCAAAGGCATACTTACTTCTGTCCAAAACACTGCCTCATCGGTCGTGCAAACAATTTCCAATCAGCCTCCGTTGAAGATCCCAATTTCCAACGACAACGCTCAATCATGGTTGCTTACTACATACCTTGATGAAGAACTACGCGTCTCAAGGGGTGATGGTGGTAGTGTGTTTGTTCTTATCAAGGAAGGAAGTTCTCTTTTGACAAACTAA

Protein sequence

>Msa0276800

MASLSNLNQLLHTNTLPVTSLNSTPSTSPSTITFGFLSKHVRRPIVLADGLRRAVYVRANTNDDEWGPEPSAGVAVAEVKETEKVTDSEREKLKKALVGSFYGTDRGLKATSETRAEIVELITQLEAKNPTPASTDALSLLNGKWILAYTSFAGLFPLLSSGLLPLLTVEEISQTIDSESLTVQNSVLFAGPLSTTSISTNAKFEVRSPNRLQIKFEEGVIGTPQLTDSLEIPENVEFLGQKIDLSPFKGILTSVQNTASSVVQTISNQPPLKIPISNDNAQSWLLTTYLDEELRVSRGDGGSVFVLIKEGSSLLTN*