AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0316720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316720 MtrunA17_Chr2g0289301 83.113 302 34 1 2 286 16 317 1.81e-169 471
Msa0316720 MtrunA17_Chr2g0289291 83.056 301 35 2 2 286 16 316 5.38e-162 452
Msa0316720 MtrunA17_Chr1g0202631 73.188 138 16 2 43 167 13 142 3.01e-57 185
Msa0316720 MtrunA17_Chr5g0410791 42.339 248 134 2 37 284 116 354 1.94e-50 169
Msa0316720 MtrunA17_Chr8g0383751 29.048 210 106 6 72 276 85 256 1.12e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316720 AT4G22240.1 63.100 271 85 4 28 284 39 308 1.87e-112 327
Msa0316720 AT4G04020.1 63.424 257 73 2 49 284 60 316 4.76e-110 321
Msa0316720 AT2G35490.1 44.444 252 124 3 48 284 124 374 3.40e-67 214

Find 161 sgRNAs with CRISPR-Local

Find 522 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGCCTTGAGTTTGCTTAA+TGG 0.209190 2_4:-13941478 Msa0316720:five_prime_UTR
TGAGTTTGCTTAATGGAAAA+TGG 0.213813 2_4:-13941471 Msa0316720:five_prime_UTR
TGGACTTCGAACTTCAAATT+TGG 0.214207 2_4:+13934935 None:intergenic
TGGACTTCGAACTTCAAATT+TGG 0.214207 2_4:+13940560 None:intergenic
CAGTGTGTTTGTTCTTATTA+AGG 0.259960 2_4:-13934130 Msa0316720:CDS
TGAGCGTTGTCGTTGGAAAT+TGG 0.261986 2_4:+13939784 None:intergenic
TCTCAATTCAACAAAGAAAA+TGG 0.263633 2_4:-13941902 Msa0316720:five_prime_UTR
TGAGTTTGCTCGATGGAAAA+TGG 0.282280 2_4:-13935241 Msa0316720:CDS
CAAAACTCTGTTCTGTTTGC+TGG 0.306297 2_4:-13940615 Msa0316720:five_prime_UTR
CGCAGGTATACATCCTTTGC+CGG 0.306305 2_4:-13940726 Msa0316720:intron
TGAGGCGGGCGGTGTATGTT+CGG 0.309347 2_4:-13941732 Msa0316720:five_prime_UTR
CAGCAAACAGAACGGAGTTT+TGG 0.315914 2_4:+13934991 None:intergenic
AAATTTGGCATTGGTACTAA+TGG 0.316715 2_4:+13934950 None:intergenic
AAATTTGGCATTGGTACTAA+TGG 0.316715 2_4:+13940575 None:intergenic
CAAAACTCCGTTCTGTTTGC+TGG 0.322958 2_4:-13934990 Msa0316720:CDS
GGCCAACACAATCGGTCTTC+TGG 0.324219 2_4:+13935520 None:intergenic
GTGGAGTTGAGAGAGGTTAC+TGG 0.345185 2_4:+13941835 None:intergenic
CAGCAAACAGAACAGAGTTT+TGG 0.351113 2_4:+13940616 None:intergenic
GGACAAACCTGCAAACGATT+TGG 0.353642 2_4:+13934915 None:intergenic
TCGAAGTCCAAATCGTTTGC+AGG 0.366646 2_4:-13934922 Msa0316720:intron
TCGAAGTCCAAATCGTTTGC+AGG 0.366646 2_4:-13940547 Msa0316720:intron
GAGCGTTGTCGTTGGAAATT+GGG 0.370330 2_4:+13939785 None:intergenic
GGGCAAACCTGCAAACGATT+TGG 0.373512 2_4:+13940540 None:intergenic
CGACCGATGAGGCAGTGTTT+TGG 0.375094 2_4:+13939842 None:intergenic
CAACCGATGAGGCAGTGTTT+TGG 0.384604 2_4:+13934271 None:intergenic
TTCTGCTGGCGTCGCGGTTG+CGG 0.388728 2_4:-13941674 Msa0316720:five_prime_UTR
GAGCATAGCTGTTGGAGATT+GGG 0.393785 2_4:+13934214 None:intergenic
TTGGAGATTGGGATCTTCAA+TGG 0.428851 2_4:+13934225 None:intergenic
GAGGCGGGCGGTGTATGTTC+GGG 0.431419 2_4:-13941731 Msa0316720:five_prime_UTR
GATCTTCAACGGAGGCTGAT+TGG 0.433255 2_4:+13939807 None:intergenic
GTGGAGTTGAGAGAGGTTAC+TGG 0.433637 2_4:+13935593 None:intergenic
TGGGGTCCAGAGCCTTCTGC+TGG 0.436696 2_4:-13941688 Msa0316720:five_prime_UTR
TGAGCATAGCTGTTGGAGAT+TGG 0.440264 2_4:+13934213 None:intergenic
AAGTTTGAGGAAGGTGTCAT+AGG 0.451543 2_4:-13939964 Msa0316720:five_prime_UTR
TTGGTTGAGGTTTGAGAGAG+AGG 0.455247 2_4:+13941879 None:intergenic
GGGTGTTTGTGTGGAGAAGT+TGG 0.455512 2_4:+13941860 None:intergenic
AAGTTTGAAGAAGGTGTCAT+AGG 0.459618 2_4:-13934393 Msa0316720:CDS
CTCAAAGCATCAGTGGAAGC+AGG 0.463223 2_4:+13935260 None:intergenic
TGTTATTCAGATCAAGTTTG+AGG 0.467097 2_4:-13939977 Msa0316720:intron
TTGTGTGGAGAAGTTGGTTG+AGG 0.470556 2_4:+13941866 None:intergenic
AAACACTGCCTCATCGGTTG+TGG 0.472396 2_4:-13934268 Msa0316720:CDS
AAACCATCGGCCAACACAAT+CGG 0.476691 2_4:+13935512 None:intergenic
TGAAGGTGTGGAGTTGAGAG+AGG 0.477148 2_4:+13935586 None:intergenic
TTCTGCCGATGTGGCAGTTG+CGG 0.482227 2_4:-13935432 Msa0316720:CDS
ATGAAGAACTACGCGTCGCA+AGG 0.483987 2_4:-13934164 Msa0316720:CDS
GGCATCAGTAGAAGCGGGTG+TGG 0.486342 2_4:+13941495 None:intergenic
CCAACGACAACGCTCAATCA+TGG 0.486944 2_4:-13939777 Msa0316720:five_prime_UTR
CGCAGGTATACATCCTATGC+AGG 0.487078 2_4:-13935101 Msa0316720:intron
TAGTGTGTTTGTTCTTATCA+AGG 0.491603 2_4:-13939701 Msa0316720:five_prime_UTR
TGAAGGTGTGGAGTTGAGAG+AGG 0.491712 2_4:+13941828 None:intergenic
CGAAAGCAATGGAAATAAAC+CGG 0.492898 2_4:+13940707 None:intergenic
ATTCAGATCAAGTTTGAAGA+AGG 0.493133 2_4:-13934402 Msa0316720:intron
TCTCCATCGACCATCACATT+CGG 0.493543 2_4:-13935560 Msa0316720:CDS
GCGACGCCAGCAGAAGGCTC+TGG 0.497720 2_4:+13941682 None:intergenic
AAACCATCGGCCAACACAAT+CGG 0.499127 2_4:+13941754 None:intergenic
AAACCGAACGTGATGGTCGA+TGG 0.504270 2_4:+13941799 None:intergenic
GTTGAGAGAGGTTACTGGAA+GGG 0.505605 2_4:+13941840 None:intergenic
TCGAACTTCAAATTTGGCAT+TGG 0.506203 2_4:+13934941 None:intergenic
TCGAACTTCAAATTTGGCAT+TGG 0.506203 2_4:+13940566 None:intergenic
TGCTGGCGTCGCGGTTGCGG+AGG 0.508923 2_4:-13941671 Msa0316720:five_prime_UTR
ATGAAGAACTACGCGTCTCA+AGG 0.510954 2_4:-13939735 Msa0316720:five_prime_UTR
TATGCGAACAATTGAACACT+TGG 0.512491 2_4:+13939631 None:intergenic
TCTCCATCGACCATCACGTT+CGG 0.514451 2_4:-13941802 Msa0316720:five_prime_UTR
CTACGCGTCGCAAGGGGTGA+TGG 0.514503 2_4:-13934156 Msa0316720:CDS
TTGTGTTGGCCGATGGTTTG+AGG 0.521688 2_4:-13941750 Msa0316720:five_prime_UTR
AGACCGATTGTGTTGGCCGA+TGG 0.523427 2_4:-13935515 Msa0316720:CDS
AGACCGATTGTGTTGGCCGA+TGG 0.523427 2_4:-13941757 Msa0316720:five_prime_UTR
TGTCCAAAACACTGCCTCAT+CGG 0.525077 2_4:-13934274 Msa0316720:CDS
TGTCCAAAACACTGCCTCAT+CGG 0.527517 2_4:-13939845 Msa0316720:five_prime_UTR
ATTTCTTCAACTGTAAGTAA+TGG 0.527551 2_4:+13940672 None:intergenic
TAATACAAATGATGATGAGT+GGG 0.528180 2_4:-13935465 Msa0316720:CDS
GTTGGCCGATGGTTTGAGGC+GGG 0.530141 2_4:-13941746 Msa0316720:five_prime_UTR
TAATACAAATGATGATGAGT+GGG 0.532459 2_4:-13941707 Msa0316720:five_prime_UTR
GGCATTGGTACTAATGGAGG+TGG 0.532928 2_4:+13940581 None:intergenic
ATTGATCTCTCGCCTTTCAA+AGG 0.534065 2_4:-13939880 Msa0316720:five_prime_UTR
TCAAAGCATCAGTGGAAGCA+GGG 0.536968 2_4:+13935261 None:intergenic
GGCATTGGTACTAATGGAGG+AGG 0.537415 2_4:+13934956 None:intergenic
TATTTCCATTGCTGTCAAGC+GGG 0.539003 2_4:-13935076 Msa0316720:CDS
AAACCGAATGTGATGGTCGA+TGG 0.540447 2_4:+13935557 None:intergenic
TGAAGAACTACGCGTCTCAA+GGG 0.546646 2_4:-13939734 Msa0316720:five_prime_UTR
TTATTTCCATTGCTGTCAAG+CGG 0.548665 2_4:-13935077 Msa0316720:CDS
CACCGCCCGCCTCAAACCAT+CGG 0.549599 2_4:+13941741 None:intergenic
CGACGCGTAGTTCTTCATCA+AGG 0.550155 2_4:+13934169 None:intergenic
ATTCAGATCAAGTTTGAGGA+AGG 0.553801 2_4:-13939973 Msa0316720:intron
TGAGGCGGAGAAGCTGAAGA+AGG 0.553930 2_4:-13941620 Msa0316720:five_prime_UTR
ATATGCCTTTGAAAGGTGAT+AGG 0.554647 2_4:+13934304 None:intergenic
TATTCATAAATAAGCAACAC+TGG 0.554909 2_4:-13939610 Msa0316720:five_prime_UTR
GCAACCGCGACGCCAGCAGA+AGG 0.556346 2_4:+13941676 None:intergenic
GCAACTGCCACATCGGCAGA+AGG 0.556723 2_4:+13935434 None:intergenic
CCAACAGCTATGCTCAATCA+TGG 0.556996 2_4:-13934206 Msa0316720:CDS
TGAAGAACTACGCGTCGCAA+GGG 0.558347 2_4:-13934163 Msa0316720:CDS
CAATGGAAATAAACCTGCAT+AGG 0.558447 2_4:+13935088 None:intergenic
CTAATGGAGGAGGTAGTCAA+TGG 0.558560 2_4:+13934966 None:intergenic
GAAGTAAATATGCCTTTGAA+AGG 0.561476 2_4:+13934297 None:intergenic
TTCAGAGCCTTCTGCCGATG+TGG 0.563046 2_4:-13935441 Msa0316720:CDS
AGACGCGTAGTTCTTCATCA+AGG 0.563282 2_4:+13939740 None:intergenic
ATTAGAGATACCAGAAAATG+TGG 0.563570 2_4:-13934349 Msa0316720:CDS
CTCAAGGCATCAGTAGAAGC+GGG 0.563935 2_4:+13941490 None:intergenic
CCATGATTGAGCGTTGTCGT+TGG 0.564294 2_4:+13939777 None:intergenic
TTGGAAATTGGGATCTTCAA+CGG 0.565875 2_4:+13939796 None:intergenic
TTTGGCATTGGTACTAATGG+AGG 0.565960 2_4:+13934953 None:intergenic
GTGTTTGTTCTTATTAAGGA+AGG 0.566267 2_4:-13934126 Msa0316720:CDS
GTGTTTGTTCTTATCAAGGA+AGG 0.566267 2_4:-13939697 Msa0316720:five_prime_UTR
GAAATTGGGATCTTCAACGG+AGG 0.567708 2_4:+13939799 None:intergenic
AATTCTTCAACCTCGAGTAA+TGG 0.568263 2_4:+13935047 None:intergenic
CTACGCGTCTCAAGGGGTGA+TGG 0.568415 2_4:-13939727 Msa0316720:five_prime_UTR
TTTGGCATTGGTACTAATGG+AGG 0.570777 2_4:+13940578 None:intergenic
AAGCTGAAGAAGGCGTTGGT+TGG 0.574482 2_4:-13941610 Msa0316720:five_prime_UTR
CAATGGAAATAAACCGGCAA+AGG 0.577508 2_4:+13940713 None:intergenic
GAAGTAAGTATGCCTTTGAA+AGG 0.579660 2_4:+13939868 None:intergenic
GATCTTCAATGGAGGCTGAT+CGG 0.582653 2_4:+13934236 None:intergenic
TTACTGGAAGGGTGTTTGTG+TGG 0.583482 2_4:+13941851 None:intergenic
CCATGATTGAGCATAGCTGT+TGG 0.585587 2_4:+13934206 None:intergenic
AGTAGTCCGCTCGAAAGCAA+TGG 0.587994 2_4:+13940696 None:intergenic
GATGCTTTGAGTTTGCTCGA+TGG 0.588967 2_4:-13935248 Msa0316720:CDS
TGCCGATGTGGCAGTTGCGG+AGG 0.591585 2_4:-13935429 Msa0316720:intron
AGTTGAGAGAGGTTACTGGA+AGG 0.592004 2_4:+13941839 None:intergenic
TCTAACGAGTCTGTGAGTTG+TGG 0.593065 2_4:+13939937 None:intergenic
CGCCATCCGCCTAAAACCAT+CGG 0.593514 2_4:+13935499 None:intergenic
GGAGAAGCTGAAGAAGGCGT+TGG 0.597030 2_4:-13941614 Msa0316720:five_prime_UTR
TCTAATGAGTCTGTCAGCTG+TGG 0.598295 2_4:+13934366 None:intergenic
CGCGTCGCAAGGGGTGATGG+TGG 0.601309 2_4:-13934153 Msa0316720:CDS
CGATGGAGAAGTTGAAGGTG+TGG 0.601344 2_4:+13941816 None:intergenic
GCTCAGAAAACCGAACGTGA+TGG 0.601660 2_4:+13941792 None:intergenic
GTTCAGAAAACCGAATGTGA+TGG 0.602906 2_4:+13935550 None:intergenic
ATTGACCTATCACCTTTCAA+AGG 0.603025 2_4:-13934309 Msa0316720:CDS
TGCCAGAAGACCGATTGTGT+TGG 0.606604 2_4:-13935522 Msa0316720:CDS
TGAGAAAGTGACGGATAGTG+AGG 0.607566 2_4:-13941638 Msa0316720:five_prime_UTR
CGATGGAGAAATTGAAGGTG+TGG 0.609239 2_4:+13935574 None:intergenic
AGTAGCCCGCTTGACAGCAA+TGG 0.609539 2_4:+13935071 None:intergenic
CGCGTCTCAAGGGGTGATGG+TGG 0.610242 2_4:-13939724 Msa0316720:five_prime_UTR
ACTCAAGGCATCAGTAGAAG+CGG 0.610668 2_4:+13941489 None:intergenic
GCATCAGTGGAAGCAGGGGT+AGG 0.612738 2_4:+13935266 None:intergenic
CTAATGGAGGTGGTAGACAA+TGG 0.616798 2_4:+13940591 None:intergenic
ATAATACAAATGATGATGAG+TGG 0.621836 2_4:-13935466 Msa0316720:CDS
ATGGTCGATGGAGAAATTGA+AGG 0.622776 2_4:+13935569 None:intergenic
GCATCAGTAGAAGCGGGTGT+GGG 0.625232 2_4:+13941496 None:intergenic
GGCCGATGGTTTGAGGCGGG+CGG 0.626348 2_4:-13941743 Msa0316720:five_prime_UTR
CTAATACAAATGATGATGAG+TGG 0.629749 2_4:-13941708 Msa0316720:five_prime_UTR
ATGGTCGATGGAGAAGTTGA+AGG 0.631836 2_4:+13941811 None:intergenic
CAAAGCATCAGTGGAAGCAG+GGG 0.635665 2_4:+13935262 None:intergenic
TGTCAGAAGACCGATTGTGT+TGG 0.635862 2_4:-13941764 Msa0316720:five_prime_UTR
TTATTTCCATTGCTTTCGAG+CGG 0.638687 2_4:-13940702 Msa0316720:five_prime_UTR
CGGGCTACTGCCATTACTCG+AGG 0.640414 2_4:-13935057 Msa0316720:CDS
GAGATTGGGATCTTCAATGG+AGG 0.642822 2_4:+13934228 None:intergenic
GAAGAACTACGCGTCTCAAG+GGG 0.644186 2_4:-13939733 Msa0316720:five_prime_UTR
AGAGCCTTCTGCTGGCGTCG+CGG 0.645840 2_4:-13941680 Msa0316720:five_prime_UTR
CACCTCCGCAACTGCCACAT+CGG 0.646367 2_4:+13935427 None:intergenic
AATTGTTTCCACAACCGATG+AGG 0.647960 2_4:+13934260 None:intergenic
AATTGTTTGCACGACCGATG+AGG 0.652679 2_4:+13939831 None:intergenic
GAAGAACTACGCGTCGCAAG+GGG 0.653009 2_4:-13934162 Msa0316720:CDS
GAAAGAGACTGAGAAAGTGA+CGG 0.653391 2_4:-13941647 Msa0316720:five_prime_UTR
GAGCAAACTCAAAGCATCAG+TGG 0.658980 2_4:+13935253 None:intergenic
AGCAACTAGTGAAACAAGAG+CGG 0.674373 2_4:-13935327 Msa0316720:CDS
CAATGGACCAGCAAACAGAA+CGG 0.674909 2_4:+13934983 None:intergenic
TGTTGGCCGATGGTTTGAGG+CGG 0.676008 2_4:-13941747 Msa0316720:five_prime_UTR
GTTAGAGATACCAGAAAACG+TGG 0.687929 2_4:-13939920 Msa0316720:five_prime_UTR
GAAAGTGACGGATAGTGAGG+CGG 0.688072 2_4:-13941635 Msa0316720:five_prime_UTR
AATACAAATGATGATGAGTG+GGG 0.694555 2_4:-13935464 Msa0316720:CDS
AATACAAATGATGATGAGTG+GGG 0.724716 2_4:-13941706 Msa0316720:five_prime_UTR
TCAAATGTAAGAATATACAG+CGG 0.731283 2_4:+13939526 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTAATTTTAATATT+TGG - chr2_4:13934594-13934613 Msa0316720:intron 0.0%
!!! ACATTTTATAAAAAAAATAC+AGG + chr2_4:13935017-13935036 None:intergenic 10.0%
!!! AACATTTTTTATATCTAAAA+TGG + chr2_4:13936550-13936569 None:intergenic 10.0%
!! TAAAAAAAAAAATCAAACTA+GGG - chr2_4:13938898-13938917 Msa0316720:intron 10.0%
!!! TTTTTTTTATTATTATTTGG+TGG - chr2_4:13939248-13939267 Msa0316720:intron 10.0%
!! TGATGGTTTAAAAATTAAAT+CGG + chr2_4:13934712-13934731 None:intergenic 15.0%
!! TGATGGTTTAAAAATTAAAT+CGG + chr2_4:13934712-13934731 None:intergenic 15.0%
!! AAAAATACTAATAGAAAAGA+AGG + chr2_4:13935516-13935535 None:intergenic 15.0%
!! ACTTATTACTAAACTATAAA+AGG + chr2_4:13935702-13935721 None:intergenic 15.0%
!!! AGAAATTTTAAATATCAGTT+AGG - chr2_4:13935872-13935891 Msa0316720:intron 15.0%
!!! TTTCTTTTACATTTTTTTGA+AGG - chr2_4:13936763-13936782 Msa0316720:intron 15.0%
!! AATAAAATTGCAAGAAAATA+AGG + chr2_4:13936935-13936954 None:intergenic 15.0%
!! TTAAACTATGAATGAATTAT+AGG + chr2_4:13938510-13938529 None:intergenic 15.0%
!!! TTTAGTGTAAATGATTTTTT+AGG - chr2_4:13938625-13938644 Msa0316720:intron 15.0%
!! GTCTCAATTTAATAATTTAT+CGG - chr2_4:13938721-13938740 Msa0316720:intron 15.0%
!!! ATTTATTCTTTTTTGGATTT+AGG - chr2_4:13938797-13938816 Msa0316720:intron 15.0%
!! AATAGTTAATAAATCTCATT+TGG - chr2_4:13938838-13938857 Msa0316720:intron 15.0%
!! GTAAAAAAAAAAATCAAACT+AGG - chr2_4:13938897-13938916 Msa0316720:intron 15.0%
!! GTAATAGAAATATATACATT+GGG + chr2_4:13939033-13939052 None:intergenic 15.0%
!! TGTAATAGAAATATATACAT+TGG + chr2_4:13939034-13939053 None:intergenic 15.0%
!! ATGTTAGATGAATATAGTAA+TGG - chr2_4:13934648-13934667 Msa0316720:intron 20.0%
!! AAATAGTTCAAATTTCAAAC+AGG + chr2_4:13934685-13934704 None:intergenic 20.0%
!! AAATAAAAAATATGGAGATG+CGG - chr2_4:13934887-13934906 Msa0316720:intron 20.0%
!! TCAATCAAAGTCAAATTATT+TGG + chr2_4:13935645-13935664 None:intergenic 20.0%
!! TGTCAAATATTAGTATAATG+AGG - chr2_4:13935774-13935793 Msa0316720:intron 20.0%
!!! TTTTACATTTTTTTGAAGGA+AGG - chr2_4:13936767-13936786 Msa0316720:intron 20.0%
!! AGATAATATTGTCAATACAA+AGG - chr2_4:13937050-13937069 Msa0316720:intron 20.0%
!! GATAATATTGTCAATACAAA+GGG - chr2_4:13937051-13937070 Msa0316720:intron 20.0%
!! ATAATATTGTCAATACAAAG+GGG - chr2_4:13937052-13937071 Msa0316720:intron 20.0%
!!! GTGTGTAATTTATTCTTTTT+TGG - chr2_4:13938790-13938809 Msa0316720:intron 20.0%
!! AATGTGTTTCTTAGTTATAA+TGG + chr2_4:13939108-13939127 None:intergenic 20.0%
!! TTTCTAACATATCTCAAAAA+CGG - chr2_4:13939621-13939640 Msa0316720:five_prime_UTR 20.0%
!! ATTACATAAATCTTACAAGT+AGG - chr2_4:13939765-13939784 Msa0316720:five_prime_UTR 20.0%
!!! TCCCATTTTGTAATAAATAT+GGG - chr2_4:13939862-13939881 Msa0316720:five_prime_UTR 20.0%
!! ACCCATATTTATTACAAAAT+GGG + chr2_4:13939866-13939885 None:intergenic 20.0%
!! AACCCATATTTATTACAAAA+TGG + chr2_4:13939867-13939886 None:intergenic 20.0%
!!! TCCCATTTTGTAATAAATAT+GGG - chr2_4:13939862-13939881 Msa0316720:five_prime_UTR 20.0%
!! ACCCATATTTATTACAAAAT+GGG + chr2_4:13939866-13939885 None:intergenic 20.0%
!! AACCCATATTTATTACAAAA+TGG + chr2_4:13939867-13939886 None:intergenic 20.0%
!! TCTTAATTCAACAAAGAAAA+TGG - chr2_4:13940361-13940380 Msa0316720:intron 20.0%
!! AAAATCGATATATAAACGTA+AGG - chr2_4:13941182-13941201 Msa0316720:intron 20.0%
! TCTCAATTCAACAAAGAAAA+TGG - chr2_4:13934123-13934142 Msa0316720:CDS 25.0%
!! TAATACAAATGATGATGAGT+GGG - chr2_4:13934318-13934337 Msa0316720:CDS 25.0%
! TCAAAATTCATTCAACATGA+TGG + chr2_4:13934729-13934748 None:intergenic 25.0%
! TCAAAATTCATTCAACATGA+TGG + chr2_4:13934729-13934748 None:intergenic 25.0%
! AATAAAAAATATGGAGATGC+GGG - chr2_4:13934888-13934907 Msa0316720:intron 25.0%
!! AACTCATATTTGTTGAAACA+TGG + chr2_4:13934989-13935008 None:intergenic 25.0%
! ATGTTTCAACAAATATGAGT+TGG - chr2_4:13934988-13935007 Msa0316720:CDS 25.0%
!!! CATATTTTTATTGCTAGCAA+TGG - chr2_4:13935050-13935069 Msa0316720:CDS 25.0%
! ATTTCTTCAACTGTAAGTAA+TGG + chr2_4:13935356-13935375 None:intergenic 25.0%
! CTGATAAACTATTTCAATCA+AGG - chr2_4:13935604-13935623 Msa0316720:intron 25.0%
! CTAAACTATAAAAGGAAAAC+AGG + chr2_4:13935694-13935713 None:intergenic 25.0%
! TATCAGTTAGGTTAGTATTA+TGG - chr2_4:13935884-13935903 Msa0316720:intron 25.0%
! TATTCATAAATAAGCAACAC+TGG - chr2_4:13936415-13936434 Msa0316720:intron 25.0%
! TCAAATGTAAGAATATACAG+CGG + chr2_4:13936502-13936521 None:intergenic 25.0%
!!! CAATTTTAACTTTCCTTGTT+TGG + chr2_4:13936695-13936714 None:intergenic 25.0%
! TAAAATTGAGTCATTTCAAG+TGG - chr2_4:13936707-13936726 Msa0316720:intron 25.0%
!! GGCTTTTCTCATATTTATAA+GGG + chr2_4:13936844-13936863 None:intergenic 25.0%
!! TGGCTTTTCTCATATTTATA+AGG + chr2_4:13936845-13936864 None:intergenic 25.0%
! TATAAATATGAGAAAAGCCA+AGG - chr2_4:13936845-13936864 Msa0316720:intron 25.0%
!!! AATTTTAGTACCATTACAGA+AGG - chr2_4:13937006-13937025 Msa0316720:intron 25.0%
!!! TTGATAATGACCAGATTATT+TGG + chr2_4:13938148-13938167 None:intergenic 25.0%
! TAGAATTGGAATAGAATTAC+CGG - chr2_4:13938356-13938375 Msa0316720:intron 25.0%
!!! AAATGTTTTAGAAACCGAAT+TGG + chr2_4:13938608-13938627 None:intergenic 25.0%
! AACTCAAAAATAGCATAGTT+TGG - chr2_4:13938875-13938894 Msa0316720:intron 25.0%
!!! AAAATCAAACTAGGGTATTT+TGG - chr2_4:13938906-13938925 Msa0316720:intron 25.0%
!! TAGCATTTTTCTTATTGTTG+GGG + chr2_4:13938980-13938999 None:intergenic 25.0%
!! GTAGCATTTTTCTTATTGTT+GGG + chr2_4:13938981-13939000 None:intergenic 25.0%
! GTTAAGAGAAAATAGAAAGT+TGG + chr2_4:13939196-13939215 None:intergenic 25.0%
!!! ATTTTCTCTTAACTTGTTAC+CGG - chr2_4:13939203-13939222 Msa0316720:intron 25.0%
! AGTCTCAAAGAAAAACTTTA+TGG - chr2_4:13939365-13939384 Msa0316720:intron 25.0%
! AGTTACAACTAACTAATTGT+TGG - chr2_4:13939526-13939545 Msa0316720:five_prime_UTR 25.0%
! ATTAGTAATTCATGTAGTGA+AGG + chr2_4:13939602-13939621 None:intergenic 25.0%
! ATGTAATAAGAGAAATGCTA+AGG + chr2_4:13939752-13939771 None:intergenic 25.0%
! ATCTTACAAGTAGGTTAATT+TGG - chr2_4:13939774-13939793 Msa0316720:five_prime_UTR 25.0%
! CATATTTATTACAAAATGGG+AGG + chr2_4:13939863-13939882 None:intergenic 25.0%
!! CTCCCATTTTGTAATAAATA+TGG - chr2_4:13939861-13939880 Msa0316720:five_prime_UTR 25.0%
! CATATTTATTACAAAATGGG+AGG + chr2_4:13939863-13939882 None:intergenic 25.0%
!! CTCCCATTTTGTAATAAATA+TGG - chr2_4:13939861-13939880 Msa0316720:five_prime_UTR 25.0%
! AATGCTAGTTAACAAAACTA+TGG - chr2_4:13940151-13940170 Msa0316720:intron 25.0%
!!! GATATCTCTTTTGAGAATTA+AGG + chr2_4:13940227-13940246 None:intergenic 25.0%
! TTGTGTCATAAGAAACAAAA+CGG + chr2_4:13940252-13940271 None:intergenic 25.0%
!!! AGCTTTATTGAGAATTATGA+AGG + chr2_4:13940312-13940331 None:intergenic 25.0%
!! ATAATACAAATGATGATGAG+TGG - chr2_4:13940559-13940578 Msa0316720:five_prime_UTR 25.0%
!! TAATACAAATGATGATGAGT+GGG - chr2_4:13934318-13934337 Msa0316720:CDS 25.0%
!!! GTTTTGGACACTTAAATTTT+CGG + chr2_4:13941021-13941040 None:intergenic 25.0%
! AAGGAAAAAAATAAGCGAAA+AGG + chr2_4:13941144-13941163 None:intergenic 25.0%
! TCAGTTAAGCTCAAATTATT+TGG + chr2_4:13941251-13941270 None:intergenic 25.0%
! AACTGAAGTGTATTAATCAA+TGG - chr2_4:13941265-13941284 Msa0316720:intron 25.0%
! CTAAACTCGAAAAGAAAAAT+AGG + chr2_4:13941300-13941319 None:intergenic 25.0%
! AAAAAAGATCGACACTTATT+TGG - chr2_4:13941381-13941400 Msa0316720:intron 25.0%
! TTAGTAGTTGTTCACTTTAA+AGG - chr2_4:13941512-13941531 Msa0316720:five_prime_UTR 25.0%
!! CAGAAAATGTGGAATTTTTA+GGG - chr2_4:13941687-13941706 Msa0316720:five_prime_UTR 25.0%
! CTAATACAAATGATGATGAG+TGG - chr2_4:13934317-13934336 Msa0316720:CDS 30.0%
! AATACAAATGATGATGAGTG+GGG - chr2_4:13934319-13934338 Msa0316720:CDS 30.0%
! TTTTCCATTAAGCAAACTCA+AGG + chr2_4:13934554-13934573 None:intergenic 30.0%
! TGAGTTTGCTTAATGGAAAA+TGG - chr2_4:13934554-13934573 Msa0316720:intron 30.0%
ATAAAAAATATGGAGATGCG+GGG - chr2_4:13934889-13934908 Msa0316720:intron 30.0%
! CATATTTGTTGAAACATGGA+AGG + chr2_4:13934985-13935004 None:intergenic 30.0%
TAAAATTGCATCACATGTGA+TGG - chr2_4:13935143-13935162 Msa0316720:intron 30.0%
ACAGTGCTAGTTAACAATAA+TGG - chr2_4:13935222-13935241 Msa0316720:intron 30.0%
!! TAAACTCATGGTTTGATTTG+TGG - chr2_4:13935273-13935292 Msa0316720:CDS 30.0%
!! AAATTTGGCATTGGTACTAA+TGG + chr2_4:13935453-13935472 None:intergenic 30.0%
TAATAGAAAAGAAGGAGCAA+GGG + chr2_4:13935508-13935527 None:intergenic 30.0%
!! TATTTTTATACTTCACCCTC+TGG - chr2_4:13935529-13935548 Msa0316720:CDS 30.0%
AACTATAAAAGGAAAACAGG+TGG + chr2_4:13935691-13935710 None:intergenic 30.0%
CCAATAGCTTAAATCATGAT+AGG + chr2_4:13936016-13936035 None:intergenic 30.0%
CCTATCATGATTTAAGCTAT+TGG - chr2_4:13936013-13936032 Msa0316720:intron 30.0%
TGTTATTCAGATCAAGTTTG+AGG - chr2_4:13936048-13936067 Msa0316720:intron 30.0%
TAGTGTGTTTGTTCTTATCA+AGG - chr2_4:13936324-13936343 Msa0316720:intron 30.0%
TCTTTCTATACTTCCAAACA+AGG - chr2_4:13936679-13936698 Msa0316720:intron 30.0%
!!! GCTCTTACAACTTTTTTAAG+TGG - chr2_4:13936729-13936748 Msa0316720:intron 30.0%
TAATGAGTCTTAGAGTTAGA+AGG - chr2_4:13936792-13936811 Msa0316720:intron 30.0%
AATGAGTCTTAGAGTTAGAA+GGG - chr2_4:13936793-13936812 Msa0316720:intron 30.0%
CATTATGGGAAATAGGAATA+TGG - chr2_4:13936817-13936836 Msa0316720:intron 30.0%
ATATTCCATGCTTATTTCCT+TGG + chr2_4:13936865-13936884 None:intergenic 30.0%
CAATGATAGAGTACAATTGT+AGG + chr2_4:13936959-13936978 None:intergenic 30.0%
GGTGCATGATAATAAATAGT+TGG - chr2_4:13937073-13937092 Msa0316720:intron 30.0%
!! AGTTGGACTAGCTAATAATT+TGG - chr2_4:13937090-13937109 Msa0316720:intron 30.0%
! GAAACTAAGTTTTTCACCTT+CGG - chr2_4:13937997-13938016 Msa0316720:intron 30.0%
GTCAGCTATTTGGAAATTAA+AGG + chr2_4:13938028-13938047 None:intergenic 30.0%
TAATGACCAGATTATTTGGA+AGG + chr2_4:13938144-13938163 None:intergenic 30.0%
ATTACTTTCCAGCAAATTAC+TGG - chr2_4:13938257-13938276 Msa0316720:intron 30.0%
GCAGTAAAATTACGAACATT+GGG - chr2_4:13938279-13938298 Msa0316720:intron 30.0%
! TTGAATGGTGAAAGTATAGA+CGG + chr2_4:13938321-13938340 None:intergenic 30.0%
!!! GATTAATTTTAGTTGCTCCT+TGG - chr2_4:13938667-13938686 Msa0316720:intron 30.0%
GAAAAACAAATTCGAATCCA+AGG + chr2_4:13938687-13938706 None:intergenic 30.0%
!!! TGCTATTTTTGAGTTCTCAT+TGG + chr2_4:13938870-13938889 None:intergenic 30.0%
! CGTAGCATTTTTCTTATTGT+TGG + chr2_4:13938982-13939001 None:intergenic 30.0%
GGAATAAAATGCAGAATTAG+TGG + chr2_4:13939079-13939098 None:intergenic 30.0%
!!! CTCTTGCAATTTGTTTTTAC+TGG + chr2_4:13939347-13939366 None:intergenic 30.0%
CCAAAAGTAAAAAATTGTCC+TGG + chr2_4:13939407-13939426 None:intergenic 30.0%
!!! CCAGGACAATTTTTTACTTT+TGG - chr2_4:13939404-13939423 Msa0316720:intron 30.0%
TAATTCATGTAGTGAAGGTA+AGG + chr2_4:13939597-13939616 None:intergenic 30.0%
! TGGACTAAAGTACTAAACAT+GGG + chr2_4:13939816-13939835 None:intergenic 30.0%
! ATGGACTAAAGTACTAAACA+TGG + chr2_4:13939817-13939836 None:intergenic 30.0%
TAACTCGTGAACAATTTCTA+TGG + chr2_4:13939836-13939855 None:intergenic 30.0%
TTAATTGCAACACATGTGAT+AGG - chr2_4:13940087-13940106 Msa0316720:intron 30.0%
TGTCACAAGCTATATTCTTA+TGG + chr2_4:13940132-13940151 None:intergenic 30.0%
AATTATGAAGGAGTGAAACA+TGG + chr2_4:13940300-13940319 None:intergenic 30.0%
! AATACAAATGATGATGAGTG+GGG - chr2_4:13934319-13934338 Msa0316720:CDS 30.0%
!! AAATTTGGCATTGGTACTAA+TGG + chr2_4:13935453-13935472 None:intergenic 30.0%
! CCTTGATTGGAATAATTTGT+CGG + chr2_4:13941213-13941232 None:intergenic 30.0%
AACTCGAAAAGAAAAATAGG+TGG + chr2_4:13941297-13941316 None:intergenic 30.0%
GTTTAGCAATAAGTCATTGT+TGG - chr2_4:13941314-13941333 Msa0316720:intron 30.0%
CATATCATGATTCAAGCTAT+TGG - chr2_4:13941579-13941598 Msa0316720:five_prime_UTR 30.0%
ATTCAGATCAAGTTTGAAGA+AGG - chr2_4:13941623-13941642 Msa0316720:five_prime_UTR 30.0%
ATTAGAGATACCAGAAAATG+TGG - chr2_4:13941676-13941695 Msa0316720:five_prime_UTR 30.0%
! CCTAAAAATTCCACATTTTC+TGG + chr2_4:13941689-13941708 None:intergenic 30.0%
! CCAGAAAATGTGGAATTTTT+AGG - chr2_4:13941686-13941705 Msa0316720:five_prime_UTR 30.0%
GAAGTAAATATGCCTTTGAA+AGG + chr2_4:13941731-13941750 None:intergenic 30.0%
CAGTGTGTTTGTTCTTATTA+AGG - chr2_4:13941895-13941914 Msa0316720:five_prime_UTR 30.0%
GTGTTTGTTCTTATTAAGGA+AGG - chr2_4:13941899-13941918 Msa0316720:five_prime_UTR 30.0%
! AGCAATGGTTTGTGTTTCTA+AGG - chr2_4:13935065-13935084 Msa0316720:CDS 35.0%
TTTGTACCTCTTGTTACCAT+TGG + chr2_4:13935169-13935188 None:intergenic 35.0%
TGTCAGAAGCAGATTTATTC+TGG + chr2_4:13935205-13935224 None:intergenic 35.0%
TTCTGCAGCTAATAAACTCA+TGG - chr2_4:13935261-13935280 Msa0316720:CDS 35.0%
CGAAAGCAATGGAAATAAAC+CGG + chr2_4:13935321-13935340 None:intergenic 35.0%
TTATTTCCATTGCTTTCGAG+CGG - chr2_4:13935323-13935342 Msa0316720:CDS 35.0%
TCGAACTTCAAATTTGGCAT+TGG + chr2_4:13935462-13935481 None:intergenic 35.0%
TGGACTTCGAACTTCAAATT+TGG + chr2_4:13935468-13935487 None:intergenic 35.0%
CTAATAGAAAAGAAGGAGCA+AGG + chr2_4:13935509-13935528 None:intergenic 35.0%
GGTTAGGAGAGAAATGATTA+CGG - chr2_4:13935550-13935569 Msa0316720:CDS 35.0%
ATTCAGATCAAGTTTGAGGA+AGG - chr2_4:13936052-13936071 Msa0316720:intron 35.0%
! ACCAGAAAACGTGGAATTTT+TGG - chr2_4:13936114-13936133 Msa0316720:intron 35.0%
! CCAGAAAACGTGGAATTTTT+GGG - chr2_4:13936115-13936134 Msa0316720:intron 35.0%
! CAGAAAACGTGGAATTTTTG+GGG - chr2_4:13936116-13936135 Msa0316720:intron 35.0%
GAAGTAAGTATGCCTTTGAA+AGG + chr2_4:13936160-13936179 None:intergenic 35.0%
TTGGAAATTGGGATCTTCAA+CGG + chr2_4:13936232-13936251 None:intergenic 35.0%
GTGTTTGTTCTTATCAAGGA+AGG - chr2_4:13936328-13936347 Msa0316720:intron 35.0%
TATGCGAACAATTGAACACT+TGG + chr2_4:13936397-13936416 None:intergenic 35.0%
GAAACAACTTAGGTGTTTAC+TGG + chr2_4:13936645-13936664 None:intergenic 35.0%
! CTGAAAGTCTGAAACAACTT+AGG + chr2_4:13936655-13936674 None:intergenic 35.0%
! AAGTTGTTTCAGACTTTCAG+TGG - chr2_4:13936655-13936674 Msa0316720:intron 35.0%
ATGAGTCTTAGAGTTAGAAG+GGG - chr2_4:13936794-13936813 Msa0316720:intron 35.0%
AAAAGCCAAGGAAATAAGCA+TGG - chr2_4:13936857-13936876 Msa0316720:intron 35.0%
GTAAAATGAGAGAAGAGGTT+AGG + chr2_4:13936909-13936928 None:intergenic 35.0%
GGATAGTAAAATGAGAGAAG+AGG + chr2_4:13936914-13936933 None:intergenic 35.0%
CTATAAGCAACCTTCTGTAA+TGG + chr2_4:13937019-13937038 None:intergenic 35.0%
! AAGGATGATGTTTCTGAGTT+CGG + chr2_4:13937226-13937245 None:intergenic 35.0%
!! TGATAATGTCGACTTTGAAG+TGG + chr2_4:13937284-13937303 None:intergenic 35.0%
GCTTATATCATGCATTAGAG+TGG + chr2_4:13937320-13937339 None:intergenic 35.0%
TAATGCATGATATAAGCCCA+AGG - chr2_4:13937323-13937342 Msa0316720:intron 35.0%
ATGAACAGCTGCAAAATTCA+TGG - chr2_4:13937365-13937384 Msa0316720:intron 35.0%
!! TTGGAAGTATCGGAATTTGA+AGG + chr2_4:13937712-13937731 None:intergenic 35.0%
TCAAATTCCGATACTTCCAA+AGG - chr2_4:13937712-13937731 Msa0316720:intron 35.0%
! ACTTGGCTTCGTCTATTTTA+CGG + chr2_4:13938190-13938209 None:intergenic 35.0%
GGTGGAATGAGAATTTAATC+CGG + chr2_4:13938230-13938249 None:intergenic 35.0%
!! TTTTACTGCCAGTAATTTGC+TGG + chr2_4:13938268-13938287 None:intergenic 35.0%
GGCAGTAAAATTACGAACAT+TGG - chr2_4:13938278-13938297 Msa0316720:intron 35.0%
AAGTATAGACGGTAGCATAA+CGG + chr2_4:13938310-13938329 None:intergenic 35.0%
ATTGAGACGAACAAAACTCA+AGG + chr2_4:13938709-13938728 None:intergenic 35.0%
ATGCAGAATTAGTGGAAATC+AGG + chr2_4:13939071-13939090 None:intergenic 35.0%
GTTACTCTCTATCATGAAAC+CGG + chr2_4:13939225-13939244 None:intergenic 35.0%
!! AAATGCGAAAACAGTTTTGG+TGG + chr2_4:13939307-13939326 None:intergenic 35.0%
! CTGAAATGCGAAAACAGTTT+TGG + chr2_4:13939310-13939329 None:intergenic 35.0%
!! GGTTAAGATCGCTTTGAAAT+TGG - chr2_4:13939642-13939661 Msa0316720:five_prime_UTR 35.0%
!! CTTTGAAATTGGTTAGCCAT+TGG - chr2_4:13939653-13939672 Msa0316720:five_prime_UTR 35.0%
AAGTACTAAACATGGGAAGT+GGG + chr2_4:13939809-13939828 None:intergenic 35.0%
! AAAGTACTAAACATGGGAAG+TGG + chr2_4:13939810-13939829 None:intergenic 35.0%
! GACAATGATTTGTGTTTCGA+TGG - chr2_4:13939923-13939942 Msa0316720:five_prime_UTR 35.0%
! GACAATGATTTGTGTTTCGA+TGG - chr2_4:13939923-13939942 Msa0316720:five_prime_UTR 35.0%
CAAATTCGTGGTTGGATTTA+TGG - chr2_4:13940185-13940204 Msa0316720:intron 35.0%
AGAGAATGAAGATTGAAGAG+AGG + chr2_4:13940342-13940361 None:intergenic 35.0%
!! AAGCTGAAGAAGGTTTTGAT+TGG - chr2_4:13940645-13940664 Msa0316720:five_prime_UTR 35.0%
!!! TGAAGAAGGTTTTGATTGGT+CGG - chr2_4:13940649-13940668 Msa0316720:five_prime_UTR 35.0%
!!! GTTTTGATTGGTCGGTTTTA+CGG - chr2_4:13940657-13940676 Msa0316720:five_prime_UTR 35.0%
!! TTTTGATTGGTCGGTTTTAC+GGG - chr2_4:13940658-13940677 Msa0316720:five_prime_UTR 35.0%
CAATGGAAATAAACCTGCAT+AGG + chr2_4:13940940-13940959 None:intergenic 35.0%
TTATTTCCATTGCTGTCAAG+CGG - chr2_4:13940948-13940967 Msa0316720:intron 35.0%
AATTCTTCAACCTCGAGTAA+TGG + chr2_4:13940981-13941000 None:intergenic 35.0%
TCGAACTTCAAATTTGGCAT+TGG + chr2_4:13935462-13935481 None:intergenic 35.0%
TGGACTTCGAACTTCAAATT+TGG + chr2_4:13935468-13935487 None:intergenic 35.0%
CCGACAAATTATTCCAATCA+AGG - chr2_4:13941210-13941229 Msa0316720:intron 35.0%
!!! AGTGTCGATCTTTTTTCTCA+AGG + chr2_4:13941377-13941396 None:intergenic 35.0%
!! AAGTTTGAAGAAGGTGTCAT+AGG - chr2_4:13941632-13941651 Msa0316720:five_prime_UTR 35.0%
ATTGACCTATCACCTTTCAA+AGG - chr2_4:13941716-13941735 Msa0316720:five_prime_UTR 35.0%
! ATATGCCTTTGAAAGGTGAT+AGG + chr2_4:13941724-13941743 None:intergenic 35.0%
GAAAGAGACTGAGAAAGTGA+CGG - chr2_4:13934378-13934397 Msa0316720:CDS 40.0%
!!! CGTTGGTTGGTTCGTTTTAT+GGG - chr2_4:13934428-13934447 Msa0316720:intron 40.0%
! GATGCCTTGAGTTTGCTTAA+TGG - chr2_4:13934547-13934566 Msa0316720:intron 40.0%
CAATGGAAATAAACCGGCAA+AGG + chr2_4:13935315-13935334 None:intergenic 40.0%
! CAGCAAACAGAACAGAGTTT+TGG + chr2_4:13935412-13935431 None:intergenic 40.0%
CAAAACTCTGTTCTGTTTGC+TGG - chr2_4:13935410-13935429 Msa0316720:intron 40.0%
!! TTTGGCATTGGTACTAATGG+AGG + chr2_4:13935450-13935469 None:intergenic 40.0%
TTATACTTCACCCTCTGGTT+AGG - chr2_4:13935534-13935553 Msa0316720:CDS 40.0%
TCATTTCTCTCCTAACCAGA+GGG + chr2_4:13935547-13935566 None:intergenic 40.0%
ATCATTTCTCTCCTAACCAG+AGG + chr2_4:13935548-13935567 None:intergenic 40.0%
!! AAGTTTGAGGAAGGTGTCAT+AGG - chr2_4:13936061-13936080 Msa0316720:intron 40.0%
GTTAGAGATACCAGAAAACG+TGG - chr2_4:13936105-13936124 Msa0316720:intron 40.0%
! CCCAAAAATTCCACGTTTTC+TGG + chr2_4:13936118-13936137 None:intergenic 40.0%
ATTGATCTCTCGCCTTTCAA+AGG - chr2_4:13936145-13936164 Msa0316720:intron 40.0%
!! TAGAGTTAGAAGGGGCATTA+TGG - chr2_4:13936802-13936821 Msa0316720:intron 40.0%
!! AGAGTTAGAAGGGGCATTAT+GGG - chr2_4:13936803-13936822 Msa0316720:intron 40.0%
AAATGAGGTTGCTCATGTCT+TGG + chr2_4:13937125-13937144 None:intergenic 40.0%
TATTCGGAGACAAGCAAATG+AGG + chr2_4:13937140-13937159 None:intergenic 40.0%
ACTCTCGAGTGGAGTTTATT+CGG + chr2_4:13937156-13937175 None:intergenic 40.0%
AAGATTCACAAACTCTCGAG+TGG + chr2_4:13937167-13937186 None:intergenic 40.0%
TCGAGAGTTTGTGAATCTTG+TGG - chr2_4:13937168-13937187 Msa0316720:intron 40.0%
! GAATTTTGCAGCTGTTCATG+CGG + chr2_4:13937364-13937383 None:intergenic 40.0%
AGCTGCAAAATTCATGGCTT+TGG - chr2_4:13937371-13937390 Msa0316720:intron 40.0%
TCCCTAAACAGAACAGGAAT+CGG + chr2_4:13937435-13937454 None:intergenic 40.0%
TGTTACGGAAACAGCAATAG+AGG - chr2_4:13937530-13937549 Msa0316720:intron 40.0%
GTTACGGAAACAGCAATAGA+GGG - chr2_4:13937531-13937550 Msa0316720:intron 40.0%
CTTGCTGCAACAAAACAGAT+TGG - chr2_4:13937607-13937626 Msa0316720:intron 40.0%
CTGCAACAAAACAGATTGGT+TGG - chr2_4:13937611-13937630 Msa0316720:intron 40.0%
CTCGTGTGCTCATTGAATAA+TGG + chr2_4:13937644-13937663 None:intergenic 40.0%
TAAGAATGAGTCGTGTGCTA+TGG + chr2_4:13937679-13937698 None:intergenic 40.0%
! TTTGGAGCCTTTGGAAGTAT+CGG + chr2_4:13937722-13937741 None:intergenic 40.0%
TATTTGTCCTTTCGCGATAC+AGG + chr2_4:13937874-13937893 None:intergenic 40.0%
AGCAGAATCACAACTCACAA+TGG - chr2_4:13937920-13937939 Msa0316720:intron 40.0%
TGGACTCCTTTATCTTGCAA+CGG - chr2_4:13937940-13937959 Msa0316720:intron 40.0%
! ACTAAGTTTTTCACCTTCGG+AGG - chr2_4:13938000-13938019 Msa0316720:intron 40.0%
! CTAAGTTTTTCACCTTCGGA+GGG - chr2_4:13938001-13938020 Msa0316720:intron 40.0%
AAAGTCTATACGCACTTCGA+TGG - chr2_4:13938097-13938116 Msa0316720:intron 40.0%
!! GGAGTACTTCCCATTCTTTT+CGG - chr2_4:13938118-13938137 Msa0316720:intron 40.0%
TTTGGAAGGCCGAAAAGAAT+GGG + chr2_4:13938130-13938149 None:intergenic 40.0%
ATTTGGAAGGCCGAAAAGAA+TGG + chr2_4:13938131-13938150 None:intergenic 40.0%
TTTCGGCCTTCCAAATAATC+TGG - chr2_4:13938135-13938154 Msa0316720:intron 40.0%
! TTATCAACTTGCTCTACCAG+AGG - chr2_4:13938161-13938180 Msa0316720:intron 40.0%
! CATTGTTTTCAGCGATGACT+TGG + chr2_4:13938207-13938226 None:intergenic 40.0%
TGCTGGAAAGTAATTGCAAG+CGG + chr2_4:13938251-13938270 None:intergenic 40.0%
AGTATAGACGGTAGCATAAC+GGG + chr2_4:13938309-13938328 None:intergenic 40.0%
CTTTCACCATTCAACAACCA+CGG - chr2_4:13938327-13938346 Msa0316720:intron 40.0%
AGCTAGGTTCATTATTCGTG+GGG + chr2_4:13938403-13938422 None:intergenic 40.0%
GAGCTAGGTTCATTATTCGT+GGG + chr2_4:13938404-13938423 None:intergenic 40.0%
ATGCTCCTCCAAACATAACT+CGG - chr2_4:13938429-13938448 Msa0316720:intron 40.0%
TTCATCCGAGTTATGTTTGG+AGG + chr2_4:13938437-13938456 None:intergenic 40.0%
CACTTCATCCGAGTTATGTT+TGG + chr2_4:13938440-13938459 None:intergenic 40.0%
CAAACATAACTCGGATGAAG+TGG - chr2_4:13938438-13938457 Msa0316720:intron 40.0%
GTTGCTTCGAATAGTTAGAG+TGG - chr2_4:13938555-13938574 Msa0316720:intron 40.0%
! TTGAGCTATGCATTGGTACT+AGG - chr2_4:13938578-13938597 Msa0316720:intron 40.0%
TGGTACTAGGATGTCCAATT+CGG - chr2_4:13938591-13938610 Msa0316720:intron 40.0%
! TTATCGGTAGTTGATGCGTT+AGG - chr2_4:13938737-13938756 Msa0316720:intron 40.0%
! TATCGGTAGTTGATGCGTTA+GGG - chr2_4:13938738-13938757 Msa0316720:intron 40.0%
TTATTGTTGGGGTGTGTTAG+TGG + chr2_4:13938969-13938988 None:intergenic 40.0%
CAGAATTAGTGGAAATCAGG+TGG + chr2_4:13939068-13939087 None:intergenic 40.0%
GGAAGTTGAAAACATGTTCC+AGG - chr2_4:13939386-13939405 Msa0316720:intron 40.0%
TTATCGTTTCCAAGCTCCAA+TGG + chr2_4:13939672-13939691 None:intergenic 40.0%
!! AACCACGAATTTGTTAGCTG+CGG + chr2_4:13940178-13940197 None:intergenic 40.0%
TCGTGGTTGGATTTATGGTT+CGG - chr2_4:13940190-13940209 Msa0316720:intron 40.0%
! TTATGTGGAGAAGTTGGTTG+AGG + chr2_4:13940398-13940417 None:intergenic 40.0%
GTGTGTTTATGTGGAGAAGT+TGG + chr2_4:13940404-13940423 None:intergenic 40.0%
! GAACTGGAAGTGTGTTTATG+TGG + chr2_4:13940413-13940432 None:intergenic 40.0%
ATGGTCGATGGAGAAATTGA+AGG + chr2_4:13940459-13940478 None:intergenic 40.0%
GTTCAGAAAACCGAATGTGA+TGG + chr2_4:13940478-13940497 None:intergenic 40.0%
GATAGTGACAGAAAGTGAGA+CGG - chr2_4:13940620-13940639 Msa0316720:five_prime_UTR 40.0%
AGCAACTAGTGAAACAAGAG+CGG - chr2_4:13940698-13940717 Msa0316720:five_prime_UTR 40.0%
! TGAGTTTGCTCGATGGAAAA+TGG - chr2_4:13940784-13940803 Msa0316720:intron 40.0%
TTCAGCAGCTAACAAACTCA+TGG - chr2_4:13940889-13940908 Msa0316720:intron 40.0%
TATTTCCATTGCTGTCAAGC+GGG - chr2_4:13940949-13940968 Msa0316720:intron 40.0%
!! TTTGGCATTGGTACTAATGG+AGG + chr2_4:13935450-13935469 None:intergenic 40.0%
ATAAGCGAAAAGGAGAACCA+CGG + chr2_4:13941134-13941153 None:intergenic 40.0%
! TTCACATAACTAGAGCGTCA+AGG + chr2_4:13941163-13941182 None:intergenic 40.0%
GAATGAGCTTGATCCTTGAT+TGG + chr2_4:13941226-13941245 None:intergenic 40.0%
AATTGTTTCCACAACCGATG+AGG + chr2_4:13941768-13941787 None:intergenic 40.0%
TTGGAGATTGGGATCTTCAA+TGG + chr2_4:13941803-13941822 None:intergenic 40.0%
TTGGTTGAGGTTTGAGAGAG+AGG + chr2_4:13934149-13934168 None:intergenic 45.0%
! TTGTGTGGAGAAGTTGGTTG+AGG + chr2_4:13934162-13934181 None:intergenic 45.0%
!! TTACTGGAAGGGTGTTTGTG+TGG + chr2_4:13934177-13934196 None:intergenic 45.0%
GTTGAGAGAGGTTACTGGAA+GGG + chr2_4:13934188-13934207 None:intergenic 45.0%
AGTTGAGAGAGGTTACTGGA+AGG + chr2_4:13934189-13934208 None:intergenic 45.0%
ATGGTCGATGGAGAAGTTGA+AGG + chr2_4:13934217-13934236 None:intergenic 45.0%
TGTCAGAAGACCGATTGTGT+TGG - chr2_4:13934261-13934280 Msa0316720:CDS 45.0%
AAACCATCGGCCAACACAAT+CGG + chr2_4:13934274-13934293 None:intergenic 45.0%
!! TGAGAAAGTGACGGATAGTG+AGG - chr2_4:13934387-13934406 Msa0316720:CDS 45.0%
!!! GCGTTGGTTGGTTCGTTTTA+TGG - chr2_4:13934427-13934446 Msa0316720:intron 45.0%
! TCGTTTTATGGGACTGATCG+TGG - chr2_4:13934439-13934458 Msa0316720:intron 45.0%
! ACTCAAGGCATCAGTAGAAG+CGG + chr2_4:13934539-13934558 None:intergenic 45.0%
!! ACATGGAAGGCGTCAACAAT+GGG + chr2_4:13934972-13934991 None:intergenic 45.0%
!! AACATGGAAGGCGTCAACAA+TGG + chr2_4:13934973-13934992 None:intergenic 45.0%
TGATGGCCAATGGTAACAAG+AGG - chr2_4:13935160-13935179 Msa0316720:intron 45.0%
CTAATGGAGGTGGTAGACAA+TGG + chr2_4:13935437-13935456 None:intergenic 45.0%
TCGAAGTCCAAATCGTTTGC+AGG - chr2_4:13935478-13935497 Msa0316720:CDS 45.0%
TCTAACGAGTCTGTGAGTTG+TGG + chr2_4:13936091-13936110 None:intergenic 45.0%
TGTCCAAAACACTGCCTCAT+CGG - chr2_4:13936180-13936199 Msa0316720:intron 45.0%
AATTGTTTGCACGACCGATG+AGG + chr2_4:13936197-13936216 None:intergenic 45.0%
GAAATTGGGATCTTCAACGG+AGG + chr2_4:13936229-13936248 None:intergenic 45.0%
! GAGCGTTGTCGTTGGAAATT+GGG + chr2_4:13936243-13936262 None:intergenic 45.0%
! TGAGCGTTGTCGTTGGAAAT+TGG + chr2_4:13936244-13936263 None:intergenic 45.0%
AGACGCGTAGTTCTTCATCA+AGG + chr2_4:13936288-13936307 None:intergenic 45.0%
ATGAAGAACTACGCGTCTCA+AGG - chr2_4:13936290-13936309 Msa0316720:intron 45.0%
TGAAGAACTACGCGTCTCAA+GGG - chr2_4:13936291-13936310 Msa0316720:intron 45.0%
!! GAAGGGGCATTATGGGAAAT+AGG - chr2_4:13936810-13936829 Msa0316720:intron 45.0%
GGACTGTAGAACAACACAGA+TGG + chr2_4:13937263-13937282 None:intergenic 45.0%
ATGTGTGTCAGAGATGACGA+GGG + chr2_4:13937411-13937430 None:intergenic 45.0%
!! TGCCGATTCCTGTTCTGTTT+AGG - chr2_4:13937430-13937449 Msa0316720:intron 45.0%
! GCCGATTCCTGTTCTGTTTA+GGG - chr2_4:13937431-13937450 Msa0316720:intron 45.0%
TCTCAGTCCCTAAACAGAAC+AGG + chr2_4:13937441-13937460 None:intergenic 45.0%
AGCTTCTGCTCATCATGAAC+AGG + chr2_4:13937589-13937608 None:intergenic 45.0%
CATTCGCTGTTTGTGATCTG+CGG - chr2_4:13937752-13937771 Msa0316720:intron 45.0%
TGATTCTGCTCATGAGGACA+TGG + chr2_4:13937910-13937929 None:intergenic 45.0%
GAGTTGTGATTCTGCTCATG+AGG + chr2_4:13937916-13937935 None:intergenic 45.0%
CGCATACCGTTGCAAGATAA+AGG + chr2_4:13937949-13937968 None:intergenic 45.0%
GAAATTAAAGGTCCCTCCGA+AGG + chr2_4:13938016-13938035 None:intergenic 45.0%
! GTCTATTTTACGGACACCTC+TGG + chr2_4:13938180-13938199 None:intergenic 45.0%
GTCATCGCTGAAAACAATGC+CGG - chr2_4:13938208-13938227 Msa0316720:intron 45.0%
TGGAAAGTAATTGCAAGCGG+TGG + chr2_4:13938248-13938267 None:intergenic 45.0%
TATAGACGGTAGCATAACGG+GGG + chr2_4:13938307-13938326 None:intergenic 45.0%
GTATAGACGGTAGCATAACG+GGG + chr2_4:13938308-13938327 None:intergenic 45.0%
! AACCACGGTGCATCTAGAAT+TGG - chr2_4:13938342-13938361 Msa0316720:intron 45.0%
TTCCAATTCTAGATGCACCG+TGG + chr2_4:13938347-13938366 None:intergenic 45.0%
!! GCAAAACGGATTATTGGCAC+CGG + chr2_4:13938378-13938397 None:intergenic 45.0%
! TTATTCGTGGGGGTGCAAAA+CGG + chr2_4:13938392-13938411 None:intergenic 45.0%
GCTAGGTTCATTATTCGTGG+GGG + chr2_4:13938402-13938421 None:intergenic 45.0%
CGAGCTAGGTTCATTATTCG+TGG + chr2_4:13938405-13938424 None:intergenic 45.0%
AGAGTGGTTGAGCTATGCAT+TGG - chr2_4:13938571-13938590 Msa0316720:intron 45.0%
CATATAAAGCGACCAACCGA+GGG + chr2_4:13938771-13938790 None:intergenic 45.0%
ACATATAAAGCGACCAACCG+AGG + chr2_4:13938772-13938791 None:intergenic 45.0%
TTCAGCGATGCTATACATCG+CGG + chr2_4:13939157-13939176 None:intergenic 45.0%
! ATTGGTTAGCCATTGGAGCT+TGG - chr2_4:13939660-13939679 Msa0316720:five_prime_UTR 45.0%
CCGGTGTATAGATATGTCAC+GGG + chr2_4:13939711-13939730 None:intergenic 45.0%
CCCGTGACATATCTATACAC+CGG - chr2_4:13939708-13939727 Msa0316720:five_prime_UTR 45.0%
CCCGGTGTATAGATATGTCA+CGG + chr2_4:13939712-13939731 None:intergenic 45.0%
CCGTGACATATCTATACACC+GGG - chr2_4:13939709-13939728 Msa0316720:five_prime_UTR 45.0%
CGTGACATATCTATACACCG+GGG - chr2_4:13939710-13939729 Msa0316720:five_prime_UTR 45.0%
GTGACATATCTATACACCGG+GGG - chr2_4:13939711-13939730 Msa0316720:five_prime_UTR 45.0%
TGACATATCTATACACCGGG+GGG - chr2_4:13939712-13939731 Msa0316720:five_prime_UTR 45.0%
ATGCTAAGGTCACACTCTCT+TGG + chr2_4:13939738-13939757 None:intergenic 45.0%
GCAGCTAACAAATTCGTGGT+TGG - chr2_4:13940177-13940196 Msa0316720:intron 45.0%
GGAGTGAAACATGGATGTTG+TGG + chr2_4:13940291-13940310 None:intergenic 45.0%
AGTTGGTTGAGGTTTGAGAG+AGG + chr2_4:13934151-13934170 None:intergenic 45.0%
TTGAGAGAGGTTACTGGAAC+TGG + chr2_4:13940429-13940448 None:intergenic 45.0%
CGATGGAGAAATTGAAGGTG+TGG + chr2_4:13940454-13940473 None:intergenic 45.0%
TCTCCATCGACCATCACATT+CGG - chr2_4:13940465-13940484 Msa0316720:intron 45.0%
AAACCGAATGTGATGGTCGA+TGG + chr2_4:13940471-13940490 None:intergenic 45.0%
AAACCATCGGCCAACACAAT+CGG + chr2_4:13934274-13934293 None:intergenic 45.0%
!! TTGTGTTGGCCGATGGTTTT+AGG - chr2_4:13940517-13940536 Msa0316720:intron 45.0%
! TCAAAGCATCAGTGGAAGCA+GGG + chr2_4:13940767-13940786 None:intergenic 45.0%
! GAGCAAACTCAAAGCATCAG+TGG + chr2_4:13940775-13940794 None:intergenic 45.0%
! GATGCTTTGAGTTTGCTCGA+TGG - chr2_4:13940777-13940796 Msa0316720:intron 45.0%
GCAGCTAACAAACTCATGGT+TGG - chr2_4:13940893-13940912 Msa0316720:intron 45.0%
CATGGTTGGATTTATTCCGC+AGG - chr2_4:13940907-13940926 Msa0316720:intron 45.0%
CTGCATAGGATGTATACCTG+CGG + chr2_4:13940926-13940945 None:intergenic 45.0%
! CAGCAAACAGAACGGAGTTT+TGG + chr2_4:13941037-13941056 None:intergenic 45.0%
CAAAACTCCGTTCTGTTTGC+TGG - chr2_4:13941035-13941054 Msa0316720:intron 45.0%
CAATGGACCAGCAAACAGAA+CGG + chr2_4:13935420-13935439 None:intergenic 45.0%
CTAATGGAGGAGGTAGTCAA+TGG + chr2_4:13941062-13941081 None:intergenic 45.0%
TCGAAGTCCAAATCGTTTGC+AGG - chr2_4:13935478-13935497 Msa0316720:CDS 45.0%
GGACAAACCTGCAAACGATT+TGG + chr2_4:13941113-13941132 None:intergenic 45.0%
TCTAATGAGTCTGTCAGCTG+TGG + chr2_4:13941662-13941681 None:intergenic 45.0%
TGTCCAAAACACTGCCTCAT+CGG - chr2_4:13936180-13936199 Msa0316720:intron 45.0%
GATCTTCAATGGAGGCTGAT+CGG + chr2_4:13941792-13941811 None:intergenic 45.0%
GAGATTGGGATCTTCAATGG+AGG + chr2_4:13941800-13941819 None:intergenic 45.0%
GAGCATAGCTGTTGGAGATT+GGG + chr2_4:13941814-13941833 None:intergenic 45.0%
TGAGCATAGCTGTTGGAGAT+TGG + chr2_4:13941815-13941834 None:intergenic 45.0%
CCATGATTGAGCATAGCTGT+TGG + chr2_4:13941822-13941841 None:intergenic 45.0%
CCAACAGCTATGCTCAATCA+TGG - chr2_4:13941819-13941838 Msa0316720:five_prime_UTR 45.0%
!! GAATAAATAAATAAAAAATA+TGG - chr2_4:13934843-13934862 Msa0316720:intron 5.0%
!! GAATAAATAAATAAAAAATA+TGG - chr2_4:13934843-13934862 Msa0316720:intron 5.0%
!! CAAATAATAATAAAAAAAAA+TGG + chr2_4:13939247-13939266 None:intergenic 5.0%
!!! CATTTTTTTTTATTATTATT+TGG - chr2_4:13939245-13939264 Msa0316720:intron 5.0%
GGGTGTTTGTGTGGAGAAGT+TGG + chr2_4:13934168-13934187 None:intergenic 50.0%
GTGGAGTTGAGAGAGGTTAC+TGG + chr2_4:13934193-13934212 None:intergenic 50.0%
! TGAAGGTGTGGAGTTGAGAG+AGG + chr2_4:13934200-13934219 None:intergenic 50.0%
CGATGGAGAAGTTGAAGGTG+TGG + chr2_4:13934212-13934231 None:intergenic 50.0%
TCTCCATCGACCATCACGTT+CGG - chr2_4:13934223-13934242 Msa0316720:CDS 50.0%
AAACCGAACGTGATGGTCGA+TGG + chr2_4:13934229-13934248 None:intergenic 50.0%
GCTCAGAAAACCGAACGTGA+TGG + chr2_4:13934236-13934255 None:intergenic 50.0%
! TTGTGTTGGCCGATGGTTTG+AGG - chr2_4:13934275-13934294 Msa0316720:CDS 50.0%
!! GAAAGTGACGGATAGTGAGG+CGG - chr2_4:13934390-13934409 Msa0316720:CDS 50.0%
!! AAGCTGAAGAAGGCGTTGGT+TGG - chr2_4:13934415-13934434 Msa0316720:intron 50.0%
! CTCAAGGCATCAGTAGAAGC+GGG + chr2_4:13934538-13934557 None:intergenic 50.0%
CAATGGGGATGTAGCTCAGA+TGG + chr2_4:13934956-13934975 None:intergenic 50.0%
!! CATGGAAGGCGTCAACAATG+GGG + chr2_4:13934971-13934990 None:intergenic 50.0%
GCATCACATGTGATGGCCAA+TGG - chr2_4:13935150-13935169 Msa0316720:intron 50.0%
!! GGTTTGATTTGTGGTTCCGC+AGG - chr2_4:13935282-13935301 Msa0316720:CDS 50.0%
CGGCAAAGGATGTATACCTG+CGG + chr2_4:13935301-13935320 None:intergenic 50.0%
CGCAGGTATACATCCTTTGC+CGG - chr2_4:13935299-13935318 Msa0316720:CDS 50.0%
AGTAGTCCGCTCGAAAGCAA+TGG + chr2_4:13935332-13935351 None:intergenic 50.0%
!! GGCATTGGTACTAATGGAGG+TGG + chr2_4:13935447-13935466 None:intergenic 50.0%
GGGCAAACCTGCAAACGATT+TGG + chr2_4:13935488-13935507 None:intergenic 50.0%
GATCTTCAACGGAGGCTGAT+TGG + chr2_4:13936221-13936240 None:intergenic 50.0%
! CCATGATTGAGCGTTGTCGT+TGG + chr2_4:13936251-13936270 None:intergenic 50.0%
CCAACGACAACGCTCAATCA+TGG - chr2_4:13936248-13936267 Msa0316720:intron 50.0%
GAAGAACTACGCGTCTCAAG+GGG - chr2_4:13936292-13936311 Msa0316720:intron 50.0%
GTTGATGTCGGAGAAGCCTT+GGG + chr2_4:13937342-13937361 None:intergenic 50.0%
! GCTGTTCATGCGGTTGATGT+CGG + chr2_4:13937354-13937373 None:intergenic 50.0%
CATGTGTGTCAGAGATGACG+AGG + chr2_4:13937412-13937431 None:intergenic 50.0%
TGAGTCGTGTGCTATGGTTG+TGG + chr2_4:13937673-13937692 None:intergenic 50.0%
TCACAAACAGCGAATGGCAG+CGG + chr2_4:13937748-13937767 None:intergenic 50.0%
CGCAGATCACAAACAGCGAA+TGG + chr2_4:13937754-13937773 None:intergenic 50.0%
TACAGGCTTGGAACATGGCA+GGG + chr2_4:13937857-13937876 None:intergenic 50.0%
ATACAGGCTTGGAACATGGC+AGG + chr2_4:13937858-13937877 None:intergenic 50.0%
TTCCAAGCCTGTATCGCGAA+AGG - chr2_4:13937864-13937883 Msa0316720:intron 50.0%
TCTTGCAACGGTATGCGAGT+TGG - chr2_4:13937952-13937971 Msa0316720:intron 50.0%
CTTGCAACGGTATGCGAGTT+GGG - chr2_4:13937953-13937972 Msa0316720:intron 50.0%
TTAGTTTCGCGCATGTGTCG+TGG + chr2_4:13937985-13938004 None:intergenic 50.0%
GATGCACCGTGGTTGTTGAA+TGG + chr2_4:13938336-13938355 None:intergenic 50.0%
!! GGGGGTGCAAAACGGATTAT+TGG + chr2_4:13938384-13938403 None:intergenic 50.0%
GTCCGCAGCTAACAAATTCG+TGG - chr2_4:13940173-13940192 Msa0316720:intron 50.0%
! GGTTGGATTTATGGTTCGGC+AGG - chr2_4:13940194-13940213 Msa0316720:intron 50.0%
GTGGAGTTGAGAGAGGTTAC+TGG + chr2_4:13934193-13934212 None:intergenic 50.0%
! TGAAGGTGTGGAGTTGAGAG+AGG + chr2_4:13934200-13934219 None:intergenic 50.0%
TGCCAGAAGACCGATTGTGT+TGG - chr2_4:13940503-13940522 Msa0316720:intron 50.0%
!!! TGTTGGCCGATGGTTTTAGG+CGG - chr2_4:13940520-13940539 Msa0316720:intron 50.0%
TGAGACGGAGAAGCTGAAGA+AGG - chr2_4:13940635-13940654 Msa0316720:five_prime_UTR 50.0%
! CGGTTTTACGGGATTGATCG+TGG - chr2_4:13940669-13940688 Msa0316720:five_prime_UTR 50.0%
! CAAAGCATCAGTGGAAGCAG+GGG + chr2_4:13940766-13940785 None:intergenic 50.0%
! CTCAAAGCATCAGTGGAAGC+AGG + chr2_4:13940768-13940787 None:intergenic 50.0%
CGCAGGTATACATCCTATGC+AGG - chr2_4:13940924-13940943 Msa0316720:intron 50.0%
!! GGCATTGGTACTAATGGAGG+AGG + chr2_4:13935447-13935466 None:intergenic 50.0%
ATCGTTTGCAGGTTTGTCCG+TGG - chr2_4:13941114-13941133 Msa0316720:intron 50.0%
! CAACCGATGAGGCAGTGTTT+TGG + chr2_4:13941757-13941776 None:intergenic 50.0%
! AAACACTGCCTCATCGGTTG+TGG - chr2_4:13941757-13941776 Msa0316720:five_prime_UTR 50.0%
CGACGCGTAGTTCTTCATCA+AGG + chr2_4:13941859-13941878 None:intergenic 50.0%
ATGAAGAACTACGCGTCGCA+AGG - chr2_4:13941861-13941880 Msa0316720:five_prime_UTR 50.0%
TGAAGAACTACGCGTCGCAA+GGG - chr2_4:13941862-13941881 Msa0316720:five_prime_UTR 50.0%
! AGACCGATTGTGTTGGCCGA+TGG - chr2_4:13934268-13934287 Msa0316720:CDS 55.0%
TGTTGGCCGATGGTTTGAGG+CGG - chr2_4:13934278-13934297 Msa0316720:CDS 55.0%
TGAGGCGGAGAAGCTGAAGA+AGG - chr2_4:13934405-13934424 Msa0316720:intron 55.0%
! GGAGAAGCTGAAGAAGGCGT+TGG - chr2_4:13934411-13934430 Msa0316720:intron 55.0%
GCATCAGTAGAAGCGGGTGT+GGG + chr2_4:13934532-13934551 None:intergenic 55.0%
! CTTAGCATGCGAGAGGTACG+GGG + chr2_4:13934922-13934941 None:intergenic 55.0%
! GCTTAGCATGCGAGAGGTAC+GGG + chr2_4:13934923-13934942 None:intergenic 55.0%
CGCTTAGCATGCGAGAGGTA+CGG + chr2_4:13934924-13934943 None:intergenic 55.0%
! CGACCGATGAGGCAGTGTTT+TGG + chr2_4:13936186-13936205 None:intergenic 55.0%
GAGGTTGCTCATGTCTTGGC+AGG + chr2_4:13937121-13937140 None:intergenic 55.0%
! GATGGCTTTTTACGCGCGCA+AGG + chr2_4:13937245-13937264 None:intergenic 55.0%
! GGTTGATGTCGGAGAAGCCT+TGG + chr2_4:13937343-13937362 None:intergenic 55.0%
CATTTGAGTCTCCCGCGAGA+GGG - chr2_4:13937480-13937499 Msa0316720:intron 55.0%
ATTTGAGTCTCCCGCGAGAG+GGG - chr2_4:13937481-13937500 Msa0316720:intron 55.0%
TTCCGTAACAGCACCTGCAC+CGG + chr2_4:13937520-13937539 None:intergenic 55.0%
!!! CAGCGGTGTTTTGGAGCCTT+TGG + chr2_4:13937731-13937750 None:intergenic 55.0%
! AGCGAATGGCAGCGGTGTTT+TGG + chr2_4:13937740-13937759 None:intergenic 55.0%
CAGCTGCTGTGTCTGCAGTT+TGG - chr2_4:13937805-13937824 Msa0316720:intron 55.0%
CGCGATACAGGCTTGGAACA+TGG + chr2_4:13937862-13937881 None:intergenic 55.0%
GTCCTTTCGCGATACAGGCT+TGG + chr2_4:13937869-13937888 None:intergenic 55.0%
CAAATAGCTGACCAGTCGCC+CGG - chr2_4:13938036-13938055 Msa0316720:intron 55.0%
ACGTCGCACCTCCATAAACC+GGG + chr2_4:13938057-13938076 None:intergenic 55.0%
CACGTCGCACCTCCATAAAC+CGG + chr2_4:13938058-13938077 None:intergenic 55.0%
!! GGAGGAGCATTCTTCGAGCT+AGG + chr2_4:13938419-13938438 None:intergenic 55.0%
CATTTCGTGAGTGCCTCGTG+AGG - chr2_4:13939124-13939143 Msa0316720:intron 55.0%
AGCGATGCTATACATCGCGG+AGG + chr2_4:13939154-13939173 None:intergenic 55.0%
GGCCAACACAATCGGTCTTC+TGG + chr2_4:13934266-13934285 None:intergenic 55.0%
! AGACCGATTGTGTTGGCCGA+TGG - chr2_4:13934268-13934287 Msa0316720:CDS 55.0%
CGCCATCCGCCTAAAACCAT+CGG + chr2_4:13940529-13940548 None:intergenic 55.0%
TTCAGAGCCTTCTGCCGATG+TGG - chr2_4:13940584-13940603 Msa0316720:five_prime_UTR 55.0%
TTCTGCCGATGTGGCAGTTG+CGG - chr2_4:13940593-13940612 Msa0316720:five_prime_UTR 55.0%
AGTAGCCCGCTTGACAGCAA+TGG + chr2_4:13940957-13940976 None:intergenic 55.0%
GAAGAACTACGCGTCGCAAG+GGG - chr2_4:13941863-13941882 Msa0316720:five_prime_UTR 55.0%
! GTTGGCCGATGGTTTGAGGC+GGG - chr2_4:13934279-13934298 Msa0316720:CDS 60.0%
TGAGGCGGGCGGTGTATGTT+CGG - chr2_4:13934293-13934312 Msa0316720:CDS 60.0%
GGCATCAGTAGAAGCGGGTG+TGG + chr2_4:13934533-13934552 None:intergenic 60.0%
CTACGCGTCTCAAGGGGTGA+TGG - chr2_4:13936298-13936317 Msa0316720:intron 60.0%
GCATTTGAGTCTCCCGCGAG+AGG - chr2_4:13937479-13937498 Msa0316720:intron 60.0%
! GAACATGGCAGGGTTGGCAC+AGG + chr2_4:13937847-13937866 None:intergenic 60.0%
GGCTTGGAACATGGCAGGGT+TGG + chr2_4:13937853-13937872 None:intergenic 60.0%
! CGGGCGACTGGTCAGCTATT+TGG + chr2_4:13938038-13938057 None:intergenic 60.0%
CTGACCAGTCGCCCGGTTTA+TGG - chr2_4:13938043-13938062 Msa0316720:intron 60.0%
ACCAGTCGCCCGGTTTATGG+AGG - chr2_4:13938046-13938065 Msa0316720:intron 60.0%
ACCTCCATAAACCGGGCGAC+TGG + chr2_4:13938050-13938069 None:intergenic 60.0%
GCGTTAGGGACTGCTACCCT+CGG - chr2_4:13938752-13938771 Msa0316720:intron 60.0%
TAGGGACTGCTACCCTCGGT+TGG - chr2_4:13938756-13938775 Msa0316720:intron 60.0%
TCGCGGAGGAATTCCTCACG+AGG + chr2_4:13939140-13939159 None:intergenic 60.0%
!!! GGCCGATGGTTTTAGGCGGA+TGG - chr2_4:13940524-13940543 Msa0316720:intron 60.0%
GCAACTGCCACATCGGCAGA+AGG + chr2_4:13940594-13940613 None:intergenic 60.0%
CACCTCCGCAACTGCCACAT+CGG + chr2_4:13940601-13940620 None:intergenic 60.0%
GCATCAGTGGAAGCAGGGGT+AGG + chr2_4:13940762-13940781 None:intergenic 60.0%
CGGGCTACTGCCATTACTCG+AGG - chr2_4:13940968-13940987 Msa0316720:intron 60.0%
CACCGCCCGCCTCAAACCAT+CGG + chr2_4:13934287-13934306 None:intergenic 65.0%
GAGGCGGGCGGTGTATGTTC+GGG - chr2_4:13934294-13934313 Msa0316720:CDS 65.0%
TGGGGTCCAGAGCCTTCTGC+TGG - chr2_4:13934337-13934356 Msa0316720:CDS 65.0%
AGAGCCTTCTGCTGGCGTCG+CGG - chr2_4:13934345-13934364 Msa0316720:CDS 65.0%
TTCTGCTGGCGTCGCGGTTG+CGG - chr2_4:13934351-13934370 Msa0316720:CDS 65.0%
GCGCTCGCTTAGCATGCGAG+AGG + chr2_4:13934929-13934948 None:intergenic 65.0%
! CGCGTCTCAAGGGGTGATGG+TGG - chr2_4:13936301-13936320 Msa0316720:intron 65.0%
! ACAGCACCTGCACCGGCGAA+GGG + chr2_4:13937513-13937532 None:intergenic 65.0%
! AACAGCACCTGCACCGGCGA+AGG + chr2_4:13937514-13937533 None:intergenic 65.0%
!! CGCCGGTGCAGGTGCTGTTA+CGG - chr2_4:13937515-13937534 Msa0316720:intron 65.0%
GTCACACTCTCTTGGCCCCC+CGG + chr2_4:13939730-13939749 None:intergenic 65.0%
TGCCGATGTGGCAGTTGCGG+AGG - chr2_4:13940596-13940615 Msa0316720:five_prime_UTR 65.0%
CTACGCGTCGCAAGGGGTGA+TGG - chr2_4:13941869-13941888 Msa0316720:five_prime_UTR 65.0%
! GGCCGATGGTTTGAGGCGGG+CGG - chr2_4:13934282-13934301 Msa0316720:CDS 70.0%
GCGACGCCAGCAGAAGGCTC+TGG + chr2_4:13934346-13934365 None:intergenic 70.0%
GCAACCGCGACGCCAGCAGA+AGG + chr2_4:13934352-13934371 None:intergenic 70.0%
AAGGGACAGCGCCCCTCTCG+CGG + chr2_4:13937495-13937514 None:intergenic 70.0%
! CGCGTCGCAAGGGGTGATGG+TGG - chr2_4:13941872-13941891 Msa0316720:five_prime_UTR 70.0%
TGCTGGCGTCGCGGTTGCGG+AGG - chr2_4:13934354-13934373 Msa0316720:CDS 75.0%
AGGGACAGCGCCCCTCTCGC+GGG + chr2_4:13937494-13937513 None:intergenic 75.0%
!! GAGGGGCGCTGTCCCTTCGC+CGG - chr2_4:13937498-13937517 Msa0316720:intron 75.0%
CGCTGTCCCTTCGCCGGTGC+AGG - chr2_4:13937504-13937523 Msa0316720:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 13934104 13941943 13934104 ID=Msa0316720;Name=Msa0316720
chr2_4 mRNA 13934104 13941943 13934104 ID=Msa0316720-mRNA-1;Parent=Msa0316720;Name=Msa0316720-mRNA-1;_AED=0.06;_eAED=0.06;_QI=1195|0.33|0.28|1|0.66|0.57|7|0|286
chr2_4 exon 13934104 13934418 13934104 ID=Msa0316720-mRNA-1:exon:5294;Parent=Msa0316720-mRNA-1
chr2_4 exon 13934923 13935118 13934923 ID=Msa0316720-mRNA-1:exon:5293;Parent=Msa0316720-mRNA-1
chr2_4 exon 13935233 13935390 13935233 ID=Msa0316720-mRNA-1:exon:5292;Parent=Msa0316720-mRNA-1
chr2_4 exon 13935430 13935617 13935430 ID=Msa0316720-mRNA-1:exon:5291;Parent=Msa0316720-mRNA-1
chr2_4 exon 13939468 13939989 13939468 ID=Msa0316720-mRNA-1:exon:5290;Parent=Msa0316720-mRNA-1
chr2_4 exon 13940548 13940743 13940548 ID=Msa0316720-mRNA-1:exon:5289;Parent=Msa0316720-mRNA-1
chr2_4 exon 13941463 13941943 13941463 ID=Msa0316720-mRNA-1:exon:5288;Parent=Msa0316720-mRNA-1
chr2_4 five_prime_UTR 13941463 13941943 13941463 ID=Msa0316720-mRNA-1:five_prime_utr;Parent=Msa0316720-mRNA-1
chr2_4 five_prime_UTR 13940548 13940743 13940548 ID=Msa0316720-mRNA-1:five_prime_utr;Parent=Msa0316720-mRNA-1
chr2_4 five_prime_UTR 13939472 13939989 13939472 ID=Msa0316720-mRNA-1:five_prime_utr;Parent=Msa0316720-mRNA-1
chr2_4 CDS 13939468 13939471 13939468 ID=Msa0316720-mRNA-1:cds;Parent=Msa0316720-mRNA-1
chr2_4 CDS 13935430 13935617 13935430 ID=Msa0316720-mRNA-1:cds;Parent=Msa0316720-mRNA-1
chr2_4 CDS 13935233 13935390 13935233 ID=Msa0316720-mRNA-1:cds;Parent=Msa0316720-mRNA-1
chr2_4 CDS 13934923 13935118 13934923 ID=Msa0316720-mRNA-1:cds;Parent=Msa0316720-mRNA-1
chr2_4 CDS 13934104 13934418 13934104 ID=Msa0316720-mRNA-1:cds;Parent=Msa0316720-mRNA-1
Gene Sequence

>Msa0316720

ATGATTCCAGTAACCTCTCTCAACTCCACACCTTCAATTTCTCCATCGACCATCACATTCGGTTTTCTGAACAAACATGCCAGAAGACCGATTGTGTTGGCCGATGGTTTTAGGCGGATGGCGTATGTTCAAGATAATACAAATGATGATGAGTGGGGTTCAGAGCCTTCTGCCGATGTGGCAGTTGCGGAGGTTTTGATTGGTCGGTTTTACGGGATTGATCGTGGATTGAAAGCAACTAGTGAAACAAGAGCGGAGATTGATGAGCTTATTACTCAGCTTGAGTCTCAGAATCCTACCCCTGCTTCCACTGATGCTTTGAGTTTGCTCGATGGAAAATGGATTCTCGCGTATACATCCTATGCAGGTTTATTTCCATTGCTGTCAAGCGGGCTACTGCCATTACTCGAGGTTGAAGAATTATCTCAGACTATTGATTCCGAAAATTTAAGTGTCCAAAACTCCGTTCTGTTTGCTGGTCCATTGACTACCTCCTCCATTAGTACCAATGCCAAATTTGAAGTTCGAAGTCCAAATCGTTTGCAGATCAAGTTTGAAGAAGGTGTCATAGGCACTCCACAGCTGACAGACTCATTAGAGATACCAGAAAATGTGGAATTTTTAGGGAAAGAGATTGACCTATCACCTTTCAAAGGCATATTTACTTCTGTCCAAAACACTGCCTCATCGGTTGTGGAAACAATTTCCGATCAGCCTCCATTGAAGATCCCAATCTCCAACAGCTATGCTCAATCATGGTTGCTTACTACATACCTTGATGAAGAACTACGCGTCGCAAGGGGTGATGGTGGCAGTGTGTTTGTTCTTATTAAGGAAGGAAGTTCTCTCTTGACAAACTAA

Protein sequence

>Msa0316720

MIPVTSLNSTPSISPSTITFGFLNKHARRPIVLADGFRRMAYVQDNTNDDEWGSEPSADVAVAEVLIGRFYGIDRGLKATSETRAEIDELITQLESQNPTPASTDALSLLDGKWILAYTSYAGLFPLLSSGLLPLLEVEELSQTIDSENLSVQNSVLFAGPLTTSSISTNAKFEVRSPNRLQIKFEEGVIGTPQLTDSLEIPENVEFLGKEIDLSPFKGIFTSVQNTASSVVETISDQPPLKIPISNSYAQSWLLTTYLDEELRVARGDGGSVFVLIKEGSSLLTN*