Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001050 | XP_003620756.1 | 97.400 | 423 | 11 | 0 | 1 | 423 | 1 | 423 | 0.0 | 856 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001050 | G7KQI0 | 97.400 | 423 | 11 | 0 | 1 | 423 | 1 | 423 | 0.0 | 856 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0766860 | Msa1001050 | 0.806987 | 6.297860e-50 | -8.615850e-47 |
| Msa1001050 | Msa1265570 | 0.800519 | 1.387226e-48 | -8.615850e-47 |
| Msa1001050 | Msa1438510 | 0.817856 | 2.654226e-52 | -8.615850e-47 |
| Msa0901820 | Msa1001050 | 0.864523 | 1.143567e-64 | -8.615850e-47 |
| Msa0966830 | Msa1001050 | 0.909993 | 3.077863e-82 | -8.615850e-47 |
| Msa0966920 | Msa1001050 | 0.867721 | 1.110855e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001050 | MtrunA17_Chr6g0487371 | 97.400 | 423 | 11 | 0 | 1 | 423 | 1 | 423 | 0.0 | 856 |
| Msa1001050 | MtrunA17_Chr3g0140721 | 51.724 | 464 | 168 | 11 | 1 | 420 | 1 | 452 | 1.19e-145 | 422 |
| Msa1001050 | MtrunA17_Chr5g0393941 | 42.152 | 446 | 195 | 13 | 1 | 414 | 64 | 478 | 5.61e-94 | 291 |
| Msa1001050 | MtrunA17_Chr8g0389691 | 68.783 | 189 | 47 | 3 | 237 | 419 | 1 | 183 | 2.45e-85 | 258 |
| Msa1001050 | MtrunA17_Chr8g0337321 | 35.909 | 440 | 224 | 11 | 1 | 412 | 1 | 410 | 8.07e-72 | 231 |
| Msa1001050 | MtrunA17_Chr8g0389701 | 56.250 | 144 | 59 | 1 | 64 | 207 | 26 | 165 | 5.37e-50 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001050 | AT4G29310.1 | 65.127 | 433 | 130 | 9 | 1 | 422 | 1 | 423 | 0.0 | 547 |
| Msa1001050 | AT4G29310.2 | 63.746 | 331 | 104 | 7 | 1 | 322 | 1 | 324 | 1.79e-144 | 415 |
| Msa1001050 | AT1G10020.1 | 49.254 | 469 | 175 | 12 | 1 | 417 | 1 | 458 | 2.50e-133 | 391 |
| Msa1001050 | AT3G19680.1 | 42.886 | 492 | 205 | 10 | 1 | 420 | 1 | 488 | 4.82e-106 | 322 |
| Msa1001050 | AT1G50040.1 | 41.685 | 463 | 209 | 10 | 1 | 414 | 1 | 451 | 4.19e-92 | 286 |
| Msa1001050 | AT5G17640.1 | 37.907 | 430 | 228 | 9 | 1 | 404 | 1 | 417 | 1.31e-82 | 260 |
Find 109 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCGGAGCTGGTGGTTTC+AGG | 0.223787 | 6_4:-84475175 | None:intergenic |
| TGTTGGTGATGGAAGGTTTA+GGG | 0.274468 | 6_4:-84475026 | None:intergenic |
| ATCCACAATGAATGTGAAAA+AGG | 0.295332 | 6_4:+84478580 | Msa1001050:CDS |
| TTGTTGGTGATGGAAGGTTT+AGG | 0.311492 | 6_4:-84475027 | None:intergenic |
| GTGGTTTGAGAAGGGAAATT+TGG | 0.319386 | 6_4:-84475118 | None:intergenic |
| AAGACATGAAAGGTATGTTT+TGG | 0.333797 | 6_4:-84474929 | None:intergenic |
| ATCCATTGTTCTTTGTTGTT+TGG | 0.340336 | 6_4:-84474966 | None:intergenic |
| CTCGGGTTCATTTCGTGGTT+CGG | 0.344710 | 6_4:+84475437 | Msa1001050:CDS |
| TGCTGCTATTGATCTTAGTA+TGG | 0.353674 | 6_4:+84478793 | Msa1001050:CDS |
| AGTATTATGGATTGTGTTCA+AGG | 0.354254 | 6_4:+84478639 | Msa1001050:CDS |
| TTGCAAACACTCCTAGTAGA+TGG | 0.381223 | 6_4:+84478246 | Msa1001050:CDS |
| CATTATAATCAATGCAGAAT+TGG | 0.384100 | 6_4:-84478607 | None:intergenic |
| AATGTTATGAAAGAGTATTA+TGG | 0.388839 | 6_4:+84478626 | Msa1001050:CDS |
| TTCATTGTGGATTCAGCTAT+AGG | 0.393565 | 6_4:-84478569 | None:intergenic |
| CTACTCACTGAGGCGTCGTT+TGG | 0.395179 | 6_4:-84478449 | None:intergenic |
| TTGGTTTATGTAATAAGATT+TGG | 0.398565 | 6_4:-84474910 | None:intergenic |
| CAAGGTTACCACCAGGTAAA+GGG | 0.410973 | 6_4:+84478657 | Msa1001050:CDS |
| TTAGAAGCATGGAGAGAAAA+AGG | 0.415511 | 6_4:+84478491 | Msa1001050:CDS |
| CATGGTATTGTTGTTGTTGA+AGG | 0.422188 | 6_4:-84475076 | None:intergenic |
| TGTGCACCAACTTGCACAAA+AGG | 0.427169 | 6_4:-84478725 | None:intergenic |
| CGAGCCGAATCCTTCTTTCC+CGG | 0.431922 | 6_4:-84475418 | None:intergenic |
| GTCTGTGTATGCTGGAAGCA+TGG | 0.433665 | 6_4:+84475261 | Msa1001050:CDS |
| ACCATTGAGGCTGCAGCAAC+CGG | 0.435726 | 6_4:-84478353 | None:intergenic |
| CACACCATTTGTCCCATCCC+CGG | 0.436841 | 6_4:+84478376 | Msa1001050:CDS |
| CTGCGTTTGTCTGTGTATGC+TGG | 0.445120 | 6_4:+84475253 | Msa1001050:CDS |
| GTGGAAACCATCAGCGGAGC+TGG | 0.455014 | 6_4:-84475185 | None:intergenic |
| ATCACAAGTTCGAAGCTCTT+AGG | 0.455739 | 6_4:+84475298 | Msa1001050:CDS |
| TTCGGCTCGGGTTCATTTCG+TGG | 0.456979 | 6_4:+84475432 | Msa1001050:CDS |
| AAAAGGTCATGTAGATGGCT+TGG | 0.462494 | 6_4:+84478508 | Msa1001050:CDS |
| ACACTCCTAGTAGATGGAAA+AGG | 0.466520 | 6_4:+84478252 | Msa1001050:CDS |
| AAAGGTCATGTAGATGGCTT+GGG | 0.469154 | 6_4:+84478509 | Msa1001050:CDS |
| CTCTGTCTGAGCCCGGGGAT+GGG | 0.471475 | 6_4:-84478388 | None:intergenic |
| CAGTTATGTTTCATAGTGGA+TGG | 0.475543 | 6_4:+84475365 | Msa1001050:CDS |
| CTTGATACTCTGTCTGAGCC+CGG | 0.475731 | 6_4:-84478395 | None:intergenic |
| TCAAGGTTACCACCAGGTAA+AGG | 0.476377 | 6_4:+84478656 | Msa1001050:CDS |
| AGGGTTTGAACCGGGAAAGA+AGG | 0.477281 | 6_4:+84475408 | Msa1001050:CDS |
| CACTCCTAGTAGATGGAAAA+GGG | 0.485668 | 6_4:+84478253 | Msa1001050:CDS |
| GTGATGAGTTCTAGTGTTGA+AGG | 0.486355 | 6_4:+84478683 | Msa1001050:CDS |
| ACCGGTTGCTGCAGCCTCAA+TGG | 0.487378 | 6_4:+84478352 | Msa1001050:CDS |
| ACACCATTTGTCCCATCCCC+GGG | 0.490416 | 6_4:+84478377 | Msa1001050:CDS |
| ACGACGCCTCAGTGAGTAGC+TGG | 0.490910 | 6_4:+84478453 | Msa1001050:CDS |
| ACTCTGTCTGAGCCCGGGGA+TGG | 0.491390 | 6_4:-84478389 | None:intergenic |
| CATAGTGGATGGCTTGTGTT+GGG | 0.492304 | 6_4:+84475376 | Msa1001050:CDS |
| TTGATACTCTGTCTGAGCCC+GGG | 0.494151 | 6_4:-84478394 | None:intergenic |
| TCGACTGTTAGACGTACAAA+TGG | 0.494581 | 6_4:-84474995 | None:intergenic |
| AATAAGATTTGGTGTTGAAA+AGG | 0.496701 | 6_4:-84474899 | None:intergenic |
| GGAAGAAGTGTGGTTTGAGA+AGG | 0.497031 | 6_4:-84475127 | None:intergenic |
| CGAAGAATTAGCCATGCGCC+GGG | 0.497196 | 6_4:-84478425 | None:intergenic |
| GCGTCACGGACGAGAAAGAA+AGG | 0.497933 | 6_4:+84478295 | Msa1001050:CDS |
| ATAACAGTTCACGATCTCTC+TGG | 0.506176 | 6_4:+84478326 | Msa1001050:CDS |
| TGAACCGGGAAAGAAGGATT+CGG | 0.506902 | 6_4:+84475414 | Msa1001050:CDS |
| GTAGTTTAAGAAAGAGGGTG+TGG | 0.512771 | 6_4:-84474862 | None:intergenic |
| ACAGACAAACGCAGAGGGAT+AGG | 0.513376 | 6_4:-84475244 | None:intergenic |
| TCACGATCTCTCTGGTTCAC+CGG | 0.513554 | 6_4:+84478334 | Msa1001050:CDS |
| GAGCCCGGGGATGGGACAAA+TGG | 0.513648 | 6_4:-84478380 | None:intergenic |
| TCATAGTGGATGGCTTGTGT+TGG | 0.515970 | 6_4:+84475375 | Msa1001050:CDS |
| AGGGAAATTTGGTATATGAA+TGG | 0.516982 | 6_4:-84475107 | None:intergenic |
| GTTTCGTAGTTTAAGAAAGA+GGG | 0.522168 | 6_4:-84474867 | None:intergenic |
| AAAACCACCGGACTACATTC+CGG | 0.522926 | 6_4:-84475502 | None:intergenic |
| AGTTTCGTAGTTTAAGAAAG+AGG | 0.522978 | 6_4:-84474868 | None:intergenic |
| TCAAGAGAATATTAGACAGC+CGG | 0.523927 | 6_4:+84475531 | Msa1001050:CDS |
| GAAGAAGTGTGGTTTGAGAA+GGG | 0.529695 | 6_4:-84475126 | None:intergenic |
| GGGAAAGAAGGATTCGGCTC+GGG | 0.533415 | 6_4:+84475420 | Msa1001050:CDS |
| AATGCACTCCAGCGTCTCAC+AGG | 0.544235 | 6_4:+84475217 | Msa1001050:CDS |
| CGTTCAGTTATGTTTCATAG+TGG | 0.545140 | 6_4:+84475361 | Msa1001050:CDS |
| GATGAAGATGATGAAGAGAG+TGG | 0.546238 | 6_4:-84475148 | None:intergenic |
| CAGTGAGTAGCTGGAAACCA+TGG | 0.547889 | 6_4:+84478462 | Msa1001050:CDS |
| CTGATCGAAATTCTAGATCA+AGG | 0.551265 | 6_4:+84475575 | Msa1001050:CDS |
| AGGTGAACCGGAATGTAGTC+CGG | 0.552686 | 6_4:+84475495 | Msa1001050:CDS |
| AGTGAGTAGCTGGAAACCAT+GGG | 0.554092 | 6_4:+84478463 | Msa1001050:CDS |
| CAAGATCAAACCCCGGCGCA+TGG | 0.560299 | 6_4:+84478414 | Msa1001050:CDS |
| TAGGTTTGCCTGTGAGACGC+TGG | 0.562906 | 6_4:-84475225 | None:intergenic |
| TGCACAACATGTTACATGTA+TGG | 0.563106 | 6_4:+84478742 | Msa1001050:CDS |
| ACGAAGAATTAGCCATGCGC+CGG | 0.565487 | 6_4:-84478426 | None:intergenic |
| CTCATCACAAACCCTTTACC+TGG | 0.570924 | 6_4:-84478668 | None:intergenic |
| GAAACCACCAGCTCCGCTGA+TGG | 0.570979 | 6_4:+84475178 | Msa1001050:CDS |
| CATGGGGACGTTTAGAAGCA+TGG | 0.571889 | 6_4:+84478480 | Msa1001050:CDS |
| TGTGAGACGCTGGAGTGCAT+TGG | 0.575230 | 6_4:-84475215 | None:intergenic |
| GCTGGAGTGCATTGGAGTCG+AGG | 0.584687 | 6_4:-84475207 | None:intergenic |
| GAACTCGTAACCGAAAATAA+CGG | 0.585112 | 6_4:+84478542 | Msa1001050:CDS |
| AGTTCTAGTGTTGAAGGTGA+AGG | 0.591958 | 6_4:+84478689 | Msa1001050:CDS |
| TCTGTGTATGCTGGAAGCAT+GGG | 0.592421 | 6_4:+84475262 | Msa1001050:CDS |
| AACCAAACAACAAAGAACAA+TGG | 0.593579 | 6_4:+84474964 | Msa1001050:exon |
| TGAAGAGAGTGGAAGAAGTG+TGG | 0.595218 | 6_4:-84475137 | None:intergenic |
| CGGGAAAGAAGGATTCGGCT+CGG | 0.598341 | 6_4:+84475419 | Msa1001050:CDS |
| GAAGGATGAATACGTGAAAG+TGG | 0.601146 | 6_4:-84475058 | None:intergenic |
| TTCGGTCTGAACCAGATCCA+CGG | 0.603505 | 6_4:+84475455 | Msa1001050:CDS |
| ACGGACGAGAAAGAAAGGGT+TGG | 0.607719 | 6_4:+84478300 | Msa1001050:CDS |
| TGATACTCTGTCTGAGCCCG+GGG | 0.608826 | 6_4:-84478393 | None:intergenic |
| GGAAGCATGGGTCGAACTTG+TGG | 0.617042 | 6_4:+84475274 | Msa1001050:CDS |
| GAAACCATCAGCGGAGCTGG+TGG | 0.618402 | 6_4:-84475182 | None:intergenic |
| CAATTGTTTGAAGACATGAA+AGG | 0.628073 | 6_4:-84474939 | None:intergenic |
| CGTCACGGACGAGAAAGAAA+GGG | 0.630621 | 6_4:+84478296 | Msa1001050:CDS |
| CATGCTTCTAAACGTCCCCA+TGG | 0.635204 | 6_4:-84478479 | None:intergenic |
| TGAATACGTGAAAGTGGTGA+TGG | 0.640926 | 6_4:-84475052 | None:intergenic |
| TTGTGTTCAAGGTTACCACC+AGG | 0.654136 | 6_4:+84478650 | Msa1001050:CDS |
| CATACACAGACAAACGCAGA+GGG | 0.668520 | 6_4:-84475249 | None:intergenic |
| AAAAGTGTTCAAGAGCGTCA+CGG | 0.669596 | 6_4:+84478281 | Msa1001050:CDS |
| GGAGTGCATTGGAGTCGAGG+TGG | 0.675035 | 6_4:-84475204 | None:intergenic |
| ATCACAAACCCTTTACCTGG+TGG | 0.684939 | 6_4:-84478665 | None:intergenic |
| TGAACCGGAATGTAGTCCGG+TGG | 0.695792 | 6_4:+84475498 | Msa1001050:CDS |
| GACAAATGGTGTGACCATTG+AGG | 0.703421 | 6_4:-84478366 | None:intergenic |
| GTCGAGGTGGAAACCATCAG+CGG | 0.705214 | 6_4:-84475191 | None:intergenic |
| AGAGTATCAAGATCAAACCC+CGG | 0.719340 | 6_4:+84478407 | Msa1001050:CDS |
| GAAGAATTAGCCATGCGCCG+GGG | 0.725892 | 6_4:-84478424 | None:intergenic |
| GCATACACAGACAAACGCAG+AGG | 0.737316 | 6_4:-84475250 | None:intergenic |
| GTGAGTAGCTGGAAACCATG+GGG | 0.739154 | 6_4:+84478464 | Msa1001050:CDS |
| GATCAATATTAACAACAACA+CGG | 0.741783 | 6_4:-84475321 | None:intergenic |
| TGGTTTCCAGCTACTCACTG+AGG | 0.744962 | 6_4:-84478459 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAATAAAATAATAAA+AGG | - | chr6_4:84476080-84476099 | None:intergenic | 0.0% |
| !! | AAAGTTATCATATTATTAAA+AGG | + | chr6_4:84475947-84475966 | Msa1001050:intron | 10.0% |
| !!! | ATAACATAATATTTTTTTGA+AGG | - | chr6_4:84476106-84476125 | None:intergenic | 10.0% |
| !!! | GTTAATTAATTTTTTTTTGA+AGG | - | chr6_4:84476314-84476333 | None:intergenic | 10.0% |
| !! | TTAATTAACAAAGATAATTA+TGG | + | chr6_4:84476325-84476344 | Msa1001050:intron | 10.0% |
| !!! | AAAAATACTTAGTTTAAAAT+TGG | - | chr6_4:84477490-84477509 | None:intergenic | 10.0% |
| !!! | TCAATTTTTTTTTATCTTTT+AGG | + | chr6_4:84478207-84478226 | Msa1001050:intron | 10.0% |
| !! | TTAAATTTATAAATCTACCA+TGG | - | chr6_4:84475663-84475682 | None:intergenic | 15.0% |
| !! | ATCATATTATTAAAAGGAAA+AGG | + | chr6_4:84475953-84475972 | Msa1001050:intron | 15.0% |
| !!! | ACGATTTTAAATATTTTGAT+TGG | - | chr6_4:84476929-84476948 | None:intergenic | 15.0% |
| !!! | ATTAGTGTTATTAATTTATG+TGG | + | chr6_4:84476956-84476975 | Msa1001050:intron | 15.0% |
| !! | ATTAAAAAGAGTTTAATGAT+GGG | - | chr6_4:84477028-84477047 | None:intergenic | 15.0% |
| !! | TATTAAAAAGAGTTTAATGA+TGG | - | chr6_4:84477029-84477048 | None:intergenic | 15.0% |
| !! | TATCTCTATTAAACATATTT+AGG | + | chr6_4:84477160-84477179 | Msa1001050:intron | 15.0% |
| !! | AAACATAATAATTTAGTAGT+TGG | - | chr6_4:84477646-84477665 | None:intergenic | 15.0% |
| !! | TTGGTTTATGTAATAAGATT+TGG | - | chr6_4:84474913-84474932 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTGTGTTCACAT+TGG | + | chr6_4:84475696-84475715 | Msa1001050:intron | 20.0% |
| !!! | TCTTTAAAAATCAAACGATT+TGG | + | chr6_4:84475724-84475743 | Msa1001050:intron | 20.0% |
| !! | CACTATCAGAAAAAATTAAA+TGG | + | chr6_4:84475924-84475943 | Msa1001050:intron | 20.0% |
| !!! | CATTTTTTCAACAAACATAA+AGG | - | chr6_4:84475985-84476004 | None:intergenic | 20.0% |
| !!! | CTTTATGTTTGTTGAAAAAA+TGG | + | chr6_4:84475983-84476002 | Msa1001050:intron | 20.0% |
| !! | ATTAACAAAGATAATTATGG+TGG | + | chr6_4:84476328-84476347 | Msa1001050:intron | 20.0% |
| !! | TAATGTATAGTTTAAGCTTA+TGG | + | chr6_4:84476425-84476444 | Msa1001050:intron | 20.0% |
| !! | AATGTATAGTTTAAGCTTAT+GGG | + | chr6_4:84476426-84476445 | Msa1001050:intron | 20.0% |
| !!! | AATTATGACTTTGATGATTA+AGG | + | chr6_4:84476767-84476786 | Msa1001050:intron | 20.0% |
| !! | AATTGTACCATATCATATTA+TGG | + | chr6_4:84476854-84476873 | Msa1001050:intron | 20.0% |
| !!! | TTAAATATTTTGATTGGTTG+TGG | - | chr6_4:84476923-84476942 | None:intergenic | 20.0% |
| !! | AAAAAAAAACCAGAATTTGA+GGG | - | chr6_4:84477193-84477212 | None:intergenic | 20.0% |
| !! | AAAAAAAAAACCAGAATTTG+AGG | - | chr6_4:84477194-84477213 | None:intergenic | 20.0% |
| !! | CACATTTATGATATGTTATA+TGG | - | chr6_4:84477339-84477358 | None:intergenic | 20.0% |
| !!! | CTAATTTAAAGTAAAATCCA+TGG | + | chr6_4:84477400-84477419 | Msa1001050:intron | 20.0% |
| !! | TATAAACCAATGACAAAAAT+CGG | + | chr6_4:84477961-84477980 | Msa1001050:intron | 20.0% |
| !!! | TTTTTATCTTTTAGGTCTAA+TGG | + | chr6_4:84478215-84478234 | Msa1001050:intron | 20.0% |
| !!! | AATGTTATGAAAGAGTATTA+TGG | + | chr6_4:84478626-84478645 | Msa1001050:CDS | 20.0% |
| !!! | AATAAGATTTGGTGTTGAAA+AGG | - | chr6_4:84474902-84474921 | None:intergenic | 25.0% |
| ! | GATCAATATTAACAACAACA+CGG | - | chr6_4:84475324-84475343 | None:intergenic | 25.0% |
| ! | CTAAATTTGCAACTAAAAAC+CGG | - | chr6_4:84475553-84475572 | None:intergenic | 25.0% |
| !!! | ATCGTTTGATTTTTAAAGAG+TGG | - | chr6_4:84475723-84475742 | None:intergenic | 25.0% |
| !!! | ATCAAACGATTTGGTTAAAT+CGG | + | chr6_4:84475733-84475752 | Msa1001050:intron | 25.0% |
| !!! | CAATAGTCACTTTTAACTAT+TGG | - | chr6_4:84475820-84475839 | None:intergenic | 25.0% |
| ! | TGATATCTTCAATAGTTCTT+TGG | - | chr6_4:84476271-84476290 | None:intergenic | 25.0% |
| !! | GTGGGTTAATTAATTAACTA+TGG | + | chr6_4:84476390-84476409 | Msa1001050:intron | 25.0% |
| ! | GATTAAATGACATATATGGT+AGG | - | chr6_4:84476482-84476501 | None:intergenic | 25.0% |
| !! | ACCATATATGTCATTTAATC+AGG | + | chr6_4:84476482-84476501 | Msa1001050:intron | 25.0% |
| ! | ACCTGATTAAATGACATATA+TGG | - | chr6_4:84476486-84476505 | None:intergenic | 25.0% |
| ! | CAAATGAAATGAGTACAAAA+TGG | - | chr6_4:84476584-84476603 | None:intergenic | 25.0% |
| !! | CATTTTGTACTCATTTCATT+TGG | + | chr6_4:84476582-84476601 | Msa1001050:intron | 25.0% |
| ! | TAATACAAAACTTGTGGATA+GGG | - | chr6_4:84476721-84476740 | None:intergenic | 25.0% |
| ! | ATCATCAAAGTCATAATTGA+GGG | - | chr6_4:84476765-84476784 | None:intergenic | 25.0% |
| ! | AATCATCAAAGTCATAATTG+AGG | - | chr6_4:84476766-84476785 | None:intergenic | 25.0% |
| ! | GTTTACACCATAATATGATA+TGG | - | chr6_4:84476864-84476883 | None:intergenic | 25.0% |
| !! | CTGTTTATTTAAGGTTGAAA+AGG | - | chr6_4:84477372-84477391 | None:intergenic | 25.0% |
| ! | GAGAAGTTTCTGTTTATTTA+AGG | - | chr6_4:84477381-84477400 | None:intergenic | 25.0% |
| !! | TTTTTCCCACTTATTCTTTA+AGG | + | chr6_4:84477505-84477524 | Msa1001050:intron | 25.0% |
| !!! | ATTTTTTCACAAGGACATAA+AGG | - | chr6_4:84477538-84477557 | None:intergenic | 25.0% |
| !! | TTTGACACAACTAATTTTGT+AGG | + | chr6_4:84477917-84477936 | Msa1001050:intron | 25.0% |
| !!! | TATAGGTATTCCGTTATTTT+CGG | - | chr6_4:84478555-84478574 | None:intergenic | 25.0% |
| ! | CATTATAATCAATGCAGAAT+TGG | - | chr6_4:84478610-84478629 | None:intergenic | 25.0% |
| GTTTCGTAGTTTAAGAAAGA+GGG | - | chr6_4:84474870-84474889 | None:intergenic | 30.0% | |
| AGTTTCGTAGTTTAAGAAAG+AGG | - | chr6_4:84474871-84474890 | None:intergenic | 30.0% | |
| !! | AAGACATGAAAGGTATGTTT+TGG | - | chr6_4:84474932-84474951 | None:intergenic | 30.0% |
| CAATTGTTTGAAGACATGAA+AGG | - | chr6_4:84474942-84474961 | None:intergenic | 30.0% | |
| AACCAAACAACAAAGAACAA+TGG | + | chr6_4:84474964-84474983 | Msa1001050:exon | 30.0% | |
| !! | ATCCATTGTTCTTTGTTGTT+TGG | - | chr6_4:84474969-84474988 | None:intergenic | 30.0% |
| ATATGAATGGTGCAAAAACA+TGG | - | chr6_4:84475097-84475116 | None:intergenic | 30.0% | |
| AGGGAAATTTGGTATATGAA+TGG | - | chr6_4:84475110-84475129 | None:intergenic | 30.0% | |
| TTGTGTTGGGAAAAAAGAAA+GGG | + | chr6_4:84475389-84475408 | Msa1001050:CDS | 30.0% | |
| AAAAAAGAAAGGGTTTGAAC+CGG | + | chr6_4:84475399-84475418 | Msa1001050:CDS | 30.0% | |
| CTATGAACTAAAGCTTTCTA+TGG | + | chr6_4:84475761-84475780 | Msa1001050:intron | 30.0% | |
| CTTTCTATGGTTTAGCTATT+TGG | + | chr6_4:84475774-84475793 | Msa1001050:intron | 30.0% | |
| TTAATTAACCCACCATAATG+TGG | - | chr6_4:84476383-84476402 | None:intergenic | 30.0% | |
| CTTTGCTTGTCAATATCTTT+AGG | + | chr6_4:84476449-84476468 | Msa1001050:intron | 30.0% | |
| ! | GTGTCAAGTAAACATGTTTT+TGG | - | chr6_4:84476664-84476683 | None:intergenic | 30.0% |
| CTAATACAAAACTTGTGGAT+AGG | - | chr6_4:84476722-84476741 | None:intergenic | 30.0% | |
| !! | CTATCCACAAGTTTTGTATT+AGG | + | chr6_4:84476720-84476739 | Msa1001050:intron | 30.0% |
| !!! | GCAATTCAGAATGTTTTGAT+TGG | + | chr6_4:84476978-84476997 | Msa1001050:intron | 30.0% |
| ! | TTACGTGTGCAAAGTTATTT+TGG | + | chr6_4:84477001-84477020 | Msa1001050:intron | 30.0% |
| TTAATCTTAAAGAGTCTCTG+AGG | - | chr6_4:84477074-84477093 | None:intergenic | 30.0% | |
| ATTAAGATAGACTCAAGACT+CGG | + | chr6_4:84477089-84477108 | Msa1001050:intron | 30.0% | |
| GAGTACCTTAAAGAATAAGT+GGG | - | chr6_4:84477513-84477532 | None:intergenic | 30.0% | |
| TGAGTACCTTAAAGAATAAG+TGG | - | chr6_4:84477514-84477533 | None:intergenic | 30.0% | |
| !!! | AAAGGGGAAATTTTTTCACA+AGG | - | chr6_4:84477547-84477566 | None:intergenic | 30.0% |
| !! | AGTGGACTTTAATTTGAAAG+GGG | - | chr6_4:84477563-84477582 | None:intergenic | 30.0% |
| !! | GAGTGGACTTTAATTTGAAA+GGG | - | chr6_4:84477564-84477583 | None:intergenic | 30.0% |
| !! | TGAGTGGACTTTAATTTGAA+AGG | - | chr6_4:84477565-84477584 | None:intergenic | 30.0% |
| AAGTCCACTCATTTAAAAAC+AGG | + | chr6_4:84477574-84477593 | Msa1001050:intron | 30.0% | |
| !!! | TGAACCTGTTTTTAAATGAG+TGG | - | chr6_4:84477581-84477600 | None:intergenic | 30.0% |
| GTTGCATATATAACCAGATT+TGG | + | chr6_4:84477688-84477707 | Msa1001050:intron | 30.0% | |
| GACAGTTATGTATCATAGTT+TGG | - | chr6_4:84477737-84477756 | None:intergenic | 30.0% | |
| ACTATGATACATAACTGTCA+TGG | + | chr6_4:84477738-84477757 | Msa1001050:intron | 30.0% | |
| AGAGACATATGAAAATCGAA+CGG | - | chr6_4:84478181-84478200 | None:intergenic | 30.0% | |
| ATCCACAATGAATGTGAAAA+AGG | + | chr6_4:84478580-84478599 | Msa1001050:CDS | 30.0% | |
| TCCACAATGAATGTGAAAAA+GGG | + | chr6_4:84478581-84478600 | Msa1001050:CDS | 30.0% | |
| ! | AGTATTATGGATTGTGTTCA+AGG | + | chr6_4:84478639-84478658 | Msa1001050:CDS | 30.0% |
| ! | AGCTTTTCTCTCATAAACTT+AGG | + | chr6_4:84478825-84478844 | Msa1001050:CDS | 30.0% |
| ! | CATGGTATTGTTGTTGTTGA+AGG | - | chr6_4:84475079-84475098 | None:intergenic | 35.0% |
| CGTTCAGTTATGTTTCATAG+TGG | + | chr6_4:84475361-84475380 | Msa1001050:CDS | 35.0% | |
| ! | CAGTTATGTTTCATAGTGGA+TGG | + | chr6_4:84475365-84475384 | Msa1001050:CDS | 35.0% |
| CTTGTGTTGGGAAAAAAGAA+AGG | + | chr6_4:84475388-84475407 | Msa1001050:CDS | 35.0% | |
| AAAAAGAAAGGGTTTGAACC+GGG | + | chr6_4:84475400-84475419 | Msa1001050:CDS | 35.0% | |
| CCAAATTGAAAAACAAACCG+TGG | - | chr6_4:84475475-84475494 | None:intergenic | 35.0% | |
| !! | CCACGGTTTGTTTTTCAATT+TGG | + | chr6_4:84475472-84475491 | Msa1001050:CDS | 35.0% |
| !! | CGGTTTGTTTTTCAATTTGG+AGG | + | chr6_4:84475475-84475494 | Msa1001050:CDS | 35.0% |
| ! | TTTTCAATTTGGAGGTGAAC+CGG | + | chr6_4:84475483-84475502 | Msa1001050:CDS | 35.0% |
| TCTTGAATCTGAAAAACCAC+CGG | - | chr6_4:84475517-84475536 | None:intergenic | 35.0% | |
| TCAAGAGAATATTAGACAGC+CGG | + | chr6_4:84475531-84475550 | Msa1001050:CDS | 35.0% | |
| CTGATCGAAATTCTAGATCA+AGG | + | chr6_4:84475575-84475594 | Msa1001050:CDS | 35.0% | |
| ATTCTAGATCAAGGTGAGTT+TGG | + | chr6_4:84475584-84475603 | Msa1001050:intron | 35.0% | |
| !! | GATAATTATGGTGGACCATT+TGG | + | chr6_4:84476337-84476356 | Msa1001050:intron | 35.0% |
| CACTTGTAAAACTAGCCAAA+TGG | - | chr6_4:84476355-84476374 | None:intergenic | 35.0% | |
| !!! | CATTTGGCTAGTTTTACAAG+TGG | + | chr6_4:84476353-84476372 | Msa1001050:intron | 35.0% |
| CTTGTCAATATCTTTAGGCT+AGG | + | chr6_4:84476454-84476473 | Msa1001050:intron | 35.0% | |
| AATGAGATTGAGCTGGATAA+GGG | - | chr6_4:84476531-84476550 | None:intergenic | 35.0% | |
| TAATGAGATTGAGCTGGATA+AGG | - | chr6_4:84476532-84476551 | None:intergenic | 35.0% | |
| ! | ACATGATAATGAGATTGAGC+TGG | - | chr6_4:84476538-84476557 | None:intergenic | 35.0% |
| ACAGCCTAATACAAAACTTG+TGG | - | chr6_4:84476727-84476746 | None:intergenic | 35.0% | |
| TTCTAACTCAGCAAAAACCA+TGG | - | chr6_4:84477420-84477439 | None:intergenic | 35.0% | |
| ! | GCACGTTTGACATTTTCATT+AGG | + | chr6_4:84477825-84477844 | Msa1001050:intron | 35.0% |
| ! | AGTCATCCGATTTTTGTCAT+TGG | - | chr6_4:84477970-84477989 | None:intergenic | 35.0% |
| ! | TTAGAAGCATGGAGAGAAAA+AGG | + | chr6_4:84478491-84478510 | Msa1001050:CDS | 35.0% |
| AGAGAAAAAGGTCATGTAGA+TGG | + | chr6_4:84478503-84478522 | Msa1001050:CDS | 35.0% | |
| GAACTCGTAACCGAAAATAA+CGG | + | chr6_4:84478542-84478561 | Msa1001050:CDS | 35.0% | |
| TTCATTGTGGATTCAGCTAT+AGG | - | chr6_4:84478572-84478591 | None:intergenic | 35.0% | |
| !! | ACCCTTTTTCACATTCATTG+TGG | - | chr6_4:84478585-84478604 | None:intergenic | 35.0% |
| ACAATGAATGTGAAAAAGGG+TGG | + | chr6_4:84478584-84478603 | Msa1001050:CDS | 35.0% | |
| ! | AGTAAACCTTTTGTGCAAGT+TGG | + | chr6_4:84478719-84478738 | Msa1001050:CDS | 35.0% |
| TGCACAACATGTTACATGTA+TGG | + | chr6_4:84478742-84478761 | Msa1001050:CDS | 35.0% | |
| TGCTGCTATTGATCTTAGTA+TGG | + | chr6_4:84478793-84478812 | Msa1001050:CDS | 35.0% | |
| GTAGTTTAAGAAAGAGGGTG+TGG | - | chr6_4:84474865-84474884 | None:intergenic | 40.0% | |
| TCGACTGTTAGACGTACAAA+TGG | - | chr6_4:84474998-84475017 | None:intergenic | 40.0% | |
| !! | TGTTGGTGATGGAAGGTTTA+GGG | - | chr6_4:84475029-84475048 | None:intergenic | 40.0% |
| !! | TTGTTGGTGATGGAAGGTTT+AGG | - | chr6_4:84475030-84475049 | None:intergenic | 40.0% |
| !!! | ATGGTTTTGTTGGTGATGGA+AGG | - | chr6_4:84475036-84475055 | None:intergenic | 40.0% |
| !!! | GAAAGTGGTGATGGTTTTGT+TGG | - | chr6_4:84475046-84475065 | None:intergenic | 40.0% |
| TGAATACGTGAAAGTGGTGA+TGG | - | chr6_4:84475055-84475074 | None:intergenic | 40.0% | |
| GAAGGATGAATACGTGAAAG+TGG | - | chr6_4:84475061-84475080 | None:intergenic | 40.0% | |
| GTGGTTTGAGAAGGGAAATT+TGG | - | chr6_4:84475121-84475140 | None:intergenic | 40.0% | |
| ! | GAAGAAGTGTGGTTTGAGAA+GGG | - | chr6_4:84475129-84475148 | None:intergenic | 40.0% |
| GATGAAGATGATGAAGAGAG+TGG | - | chr6_4:84475151-84475170 | None:intergenic | 40.0% | |
| ATCACAAGTTCGAAGCTCTT+AGG | + | chr6_4:84475298-84475317 | Msa1001050:CDS | 40.0% | |
| TGAAAAACAAACCGTGGATC+TGG | - | chr6_4:84475469-84475488 | None:intergenic | 40.0% | |
| CTCTATGCTAATGTTAGCCA+TGG | + | chr6_4:84475643-84475662 | Msa1001050:intron | 40.0% | |
| !!! | TTGGCTAGTTTTACAAGTGG+TGG | + | chr6_4:84476356-84476375 | Msa1001050:intron | 40.0% |
| TCATTATCATGTCTCTCTCG+TGG | + | chr6_4:84476546-84476565 | Msa1001050:intron | 40.0% | |
| GGTTTATGTCCCTCAAATTC+TGG | + | chr6_4:84477181-84477200 | Msa1001050:intron | 40.0% | |
| CTTGTCTGTTTGACCAAATC+TGG | - | chr6_4:84477704-84477723 | None:intergenic | 40.0% | |
| CTATGCAATTCATGATCACG+AGG | - | chr6_4:84478064-84478083 | None:intergenic | 40.0% | |
| TTGCAAACACTCCTAGTAGA+TGG | + | chr6_4:84478246-84478265 | Msa1001050:CDS | 40.0% | |
| ACACTCCTAGTAGATGGAAA+AGG | + | chr6_4:84478252-84478271 | Msa1001050:CDS | 40.0% | |
| CACTCCTAGTAGATGGAAAA+GGG | + | chr6_4:84478253-84478272 | Msa1001050:CDS | 40.0% | |
| ! | AATGCCCTTTTCCATCTACT+AGG | - | chr6_4:84478260-84478279 | None:intergenic | 40.0% |
| !! | AAAAGTGTTCAAGAGCGTCA+CGG | + | chr6_4:84478281-84478300 | Msa1001050:CDS | 40.0% |
| ATAACAGTTCACGATCTCTC+TGG | + | chr6_4:84478326-84478345 | Msa1001050:CDS | 40.0% | |
| ! | AGAGTATCAAGATCAAACCC+CGG | + | chr6_4:84478407-84478426 | Msa1001050:CDS | 40.0% |
| AAAAGGTCATGTAGATGGCT+TGG | + | chr6_4:84478508-84478527 | Msa1001050:CDS | 40.0% | |
| AAAGGTCATGTAGATGGCTT+GGG | + | chr6_4:84478509-84478528 | Msa1001050:CDS | 40.0% | |
| ! | GTGATGAGTTCTAGTGTTGA+AGG | + | chr6_4:84478683-84478702 | Msa1001050:CDS | 40.0% |
| ! | AGTTCTAGTGTTGAAGGTGA+AGG | + | chr6_4:84478689-84478708 | Msa1001050:CDS | 40.0% |
| !!! | GGTGATGGTTTTGTTGGTGA+TGG | - | chr6_4:84475040-84475059 | None:intergenic | 45.0% |
| ! | GGAAGAAGTGTGGTTTGAGA+AGG | - | chr6_4:84475130-84475149 | None:intergenic | 45.0% |
| TGAAGAGAGTGGAAGAAGTG+TGG | - | chr6_4:84475140-84475159 | None:intergenic | 45.0% | |
| CATACACAGACAAACGCAGA+GGG | - | chr6_4:84475252-84475271 | None:intergenic | 45.0% | |
| ! | TCTGTGTATGCTGGAAGCAT+GGG | + | chr6_4:84475262-84475281 | Msa1001050:CDS | 45.0% |
| !! | TCATAGTGGATGGCTTGTGT+TGG | + | chr6_4:84475375-84475394 | Msa1001050:CDS | 45.0% |
| !! | CATAGTGGATGGCTTGTGTT+GGG | + | chr6_4:84475376-84475395 | Msa1001050:CDS | 45.0% |
| TGAACCGGGAAAGAAGGATT+CGG | + | chr6_4:84475414-84475433 | Msa1001050:CDS | 45.0% | |
| AAAACCACCGGACTACATTC+CGG | - | chr6_4:84475505-84475524 | None:intergenic | 45.0% | |
| !! | ACAAGTGGTGGACCACATTA+TGG | + | chr6_4:84476368-84476387 | Msa1001050:intron | 45.0% |
| CCAGATACTAGCACATGGTA+GGG | - | chr6_4:84477767-84477786 | None:intergenic | 45.0% | |
| ACCAGATACTAGCACATGGT+AGG | - | chr6_4:84477768-84477787 | None:intergenic | 45.0% | |
| TGCTACCAGATACTAGCACA+TGG | - | chr6_4:84477772-84477791 | None:intergenic | 45.0% | |
| !! | ACTCGGATATTGATTCCCTG+CGG | - | chr6_4:84478019-84478038 | None:intergenic | 45.0% |
| GACAAATGGTGTGACCATTG+AGG | - | chr6_4:84478369-84478388 | None:intergenic | 45.0% | |
| AGTGAGTAGCTGGAAACCAT+GGG | + | chr6_4:84478463-84478482 | Msa1001050:CDS | 45.0% | |
| TTGTGTTCAAGGTTACCACC+AGG | + | chr6_4:84478650-84478669 | Msa1001050:CDS | 45.0% | |
| TCAAGGTTACCACCAGGTAA+AGG | + | chr6_4:84478656-84478675 | Msa1001050:CDS | 45.0% | |
| CAAGGTTACCACCAGGTAAA+GGG | + | chr6_4:84478657-84478676 | Msa1001050:CDS | 45.0% | |
| ATCACAAACCCTTTACCTGG+TGG | - | chr6_4:84478668-84478687 | None:intergenic | 45.0% | |
| CTCATCACAAACCCTTTACC+TGG | - | chr6_4:84478671-84478690 | None:intergenic | 45.0% | |
| TGTGCACCAACTTGCACAAA+AGG | - | chr6_4:84478728-84478747 | None:intergenic | 45.0% | |
| !!! | ATATTTTTTTTTATTTTACT+CGG | - | chr6_4:84478036-84478055 | None:intergenic | 5.0% |
| ACAGACAAACGCAGAGGGAT+AGG | - | chr6_4:84475247-84475266 | None:intergenic | 50.0% | |
| GCATACACAGACAAACGCAG+AGG | - | chr6_4:84475253-84475272 | None:intergenic | 50.0% | |
| CTGCGTTTGTCTGTGTATGC+TGG | + | chr6_4:84475253-84475272 | Msa1001050:CDS | 50.0% | |
| GTCTGTGTATGCTGGAAGCA+TGG | + | chr6_4:84475261-84475280 | Msa1001050:CDS | 50.0% | |
| AGGGTTTGAACCGGGAAAGA+AGG | + | chr6_4:84475408-84475427 | Msa1001050:CDS | 50.0% | |
| CTCGGGTTCATTTCGTGGTT+CGG | + | chr6_4:84475437-84475456 | Msa1001050:CDS | 50.0% | |
| TTCGGTCTGAACCAGATCCA+CGG | + | chr6_4:84475455-84475474 | Msa1001050:CDS | 50.0% | |
| AGGTGAACCGGAATGTAGTC+CGG | + | chr6_4:84475495-84475514 | Msa1001050:CDS | 50.0% | |
| !! | AGTGGTGGACCACATTATGG+TGG | + | chr6_4:84476371-84476390 | Msa1001050:intron | 50.0% |
| !! | GTGGTGGACCACATTATGGT+GGG | + | chr6_4:84476372-84476391 | Msa1001050:intron | 50.0% |
| TCAGGTGCACATGCTTAGTC+TGG | + | chr6_4:84476500-84476519 | Msa1001050:intron | 50.0% | |
| CCCTACCATGTGCTAGTATC+TGG | + | chr6_4:84477764-84477783 | Msa1001050:intron | 50.0% | |
| TACCGTCACTATTTGACCGC+AGG | + | chr6_4:84478000-84478019 | Msa1001050:intron | 50.0% | |
| ACCGTCACTATTTGACCGCA+GGG | + | chr6_4:84478001-84478020 | Msa1001050:intron | 50.0% | |
| TCCCTGCGGTCAAATAGTGA+CGG | - | chr6_4:84478005-84478024 | None:intergenic | 50.0% | |
| CGTCACGGACGAGAAAGAAA+GGG | + | chr6_4:84478296-84478315 | Msa1001050:CDS | 50.0% | |
| ACGGACGAGAAAGAAAGGGT+TGG | + | chr6_4:84478300-84478319 | Msa1001050:CDS | 50.0% | |
| ! | TCACGATCTCTCTGGTTCAC+CGG | + | chr6_4:84478334-84478353 | Msa1001050:CDS | 50.0% |
| TTGATACTCTGTCTGAGCCC+GGG | - | chr6_4:84478397-84478416 | None:intergenic | 50.0% | |
| CTTGATACTCTGTCTGAGCC+CGG | - | chr6_4:84478398-84478417 | None:intergenic | 50.0% | |
| ACGAAGAATTAGCCATGCGC+CGG | - | chr6_4:84478429-84478448 | None:intergenic | 50.0% | |
| TGGTTTCCAGCTACTCACTG+AGG | - | chr6_4:84478462-84478481 | None:intergenic | 50.0% | |
| CAGTGAGTAGCTGGAAACCA+TGG | + | chr6_4:84478462-84478481 | Msa1001050:CDS | 50.0% | |
| GTGAGTAGCTGGAAACCATG+GGG | + | chr6_4:84478464-84478483 | Msa1001050:CDS | 50.0% | |
| CATGCTTCTAAACGTCCCCA+TGG | - | chr6_4:84478482-84478501 | None:intergenic | 50.0% | |
| CATGGGGACGTTTAGAAGCA+TGG | + | chr6_4:84478480-84478499 | Msa1001050:CDS | 50.0% | |
| GTCGAGGTGGAAACCATCAG+CGG | - | chr6_4:84475194-84475213 | None:intergenic | 55.0% | |
| TGTGAGACGCTGGAGTGCAT+TGG | - | chr6_4:84475218-84475237 | None:intergenic | 55.0% | |
| AATGCACTCCAGCGTCTCAC+AGG | + | chr6_4:84475217-84475236 | Msa1001050:CDS | 55.0% | |
| TAGGTTTGCCTGTGAGACGC+TGG | - | chr6_4:84475228-84475247 | None:intergenic | 55.0% | |
| ! | GGAAGCATGGGTCGAACTTG+TGG | + | chr6_4:84475274-84475293 | Msa1001050:CDS | 55.0% |
| CGAGCCGAATCCTTCTTTCC+CGG | - | chr6_4:84475421-84475440 | None:intergenic | 55.0% | |
| CGGGAAAGAAGGATTCGGCT+CGG | + | chr6_4:84475419-84475438 | Msa1001050:CDS | 55.0% | |
| GGGAAAGAAGGATTCGGCTC+GGG | + | chr6_4:84475420-84475439 | Msa1001050:CDS | 55.0% | |
| !! | TTCGGCTCGGGTTCATTTCG+TGG | + | chr6_4:84475432-84475451 | Msa1001050:CDS | 55.0% |
| TGAACCGGAATGTAGTCCGG+TGG | + | chr6_4:84475498-84475517 | Msa1001050:CDS | 55.0% | |
| GCGTCACGGACGAGAAAGAA+AGG | + | chr6_4:84478295-84478314 | Msa1001050:CDS | 55.0% | |
| ACCATTGAGGCTGCAGCAAC+CGG | - | chr6_4:84478356-84478375 | None:intergenic | 55.0% | |
| CACACCATTTGTCCCATCCC+CGG | + | chr6_4:84478376-84478395 | Msa1001050:CDS | 55.0% | |
| ACACCATTTGTCCCATCCCC+GGG | + | chr6_4:84478377-84478396 | Msa1001050:CDS | 55.0% | |
| TGATACTCTGTCTGAGCCCG+GGG | - | chr6_4:84478396-84478415 | None:intergenic | 55.0% | |
| GAAGAATTAGCCATGCGCCG+GGG | - | chr6_4:84478427-84478446 | None:intergenic | 55.0% | |
| CGAAGAATTAGCCATGCGCC+GGG | - | chr6_4:84478428-84478447 | None:intergenic | 55.0% | |
| !! | CTACTCACTGAGGCGTCGTT+TGG | - | chr6_4:84478452-84478471 | None:intergenic | 55.0% |
| TCAGCGGAGCTGGTGGTTTC+AGG | - | chr6_4:84475178-84475197 | None:intergenic | 60.0% | |
| GAAACCACCAGCTCCGCTGA+TGG | + | chr6_4:84475178-84475197 | Msa1001050:CDS | 60.0% | |
| GAAACCATCAGCGGAGCTGG+TGG | - | chr6_4:84475185-84475204 | None:intergenic | 60.0% | |
| GTGGAAACCATCAGCGGAGC+TGG | - | chr6_4:84475188-84475207 | None:intergenic | 60.0% | |
| GGAGTGCATTGGAGTCGAGG+TGG | - | chr6_4:84475207-84475226 | None:intergenic | 60.0% | |
| GCTGGAGTGCATTGGAGTCG+AGG | - | chr6_4:84475210-84475229 | None:intergenic | 60.0% | |
| ACCGGTTGCTGCAGCCTCAA+TGG | + | chr6_4:84478352-84478371 | Msa1001050:CDS | 60.0% | |
| CAAGATCAAACCCCGGCGCA+TGG | + | chr6_4:84478414-84478433 | Msa1001050:CDS | 60.0% | |
| ACGACGCCTCAGTGAGTAGC+TGG | + | chr6_4:84478453-84478472 | Msa1001050:CDS | 60.0% | |
| GAGCCCGGGGATGGGACAAA+TGG | - | chr6_4:84478383-84478402 | None:intergenic | 65.0% | |
| CTCTGTCTGAGCCCGGGGAT+GGG | - | chr6_4:84478391-84478410 | None:intergenic | 65.0% | |
| ACTCTGTCTGAGCCCGGGGA+TGG | - | chr6_4:84478392-84478411 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 84474845 | 84478886 | 84474845 | ID=Msa1001050;Name=Msa1001050 |
| chr6_4 | mRNA | 84474845 | 84478886 | 84474845 | ID=Msa1001050-mRNA-1;Parent=Msa1001050;Name=Msa1001050-mRNA-1;_AED=0.02;_eAED=0.02;_QI=138|1|0.5|1|1|1|2|0|423 |
| chr6_4 | exon | 84474845 | 84475596 | 84474845 | ID=Msa1001050-mRNA-1:exon:16467;Parent=Msa1001050-mRNA-1 |
| chr6_4 | exon | 84478229 | 84478886 | 84478229 | ID=Msa1001050-mRNA-1:exon:16468;Parent=Msa1001050-mRNA-1 |
| chr6_4 | five_prime_UTR | 84474845 | 84474982 | 84474845 | ID=Msa1001050-mRNA-1:five_prime_utr;Parent=Msa1001050-mRNA-1 |
| chr6_4 | CDS | 84474983 | 84475596 | 84474983 | ID=Msa1001050-mRNA-1:cds;Parent=Msa1001050-mRNA-1 |
| chr6_4 | CDS | 84478229 | 84478886 | 84478229 | ID=Msa1001050-mRNA-1:cds;Parent=Msa1001050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
