Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901820 | XP_003620756.1 | 97.872 | 423 | 9 | 0 | 1 | 423 | 1 | 423 | 0.0 | 860 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901820 | G7KQI0 | 97.872 | 423 | 9 | 0 | 1 | 423 | 1 | 423 | 0.0 | 860 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004340 | Msa0901820 | -0.802987 | 4.322803e-49 | -8.615850e-47 |
| Msa0078390 | Msa0901820 | 0.801828 | 7.490706e-49 | -8.615850e-47 |
| Msa0610780 | Msa0901820 | -0.804831 | 1.788152e-49 | -8.615850e-47 |
| Msa0705810 | Msa0901820 | -0.807581 | 4.713733e-50 | -8.615850e-47 |
| Msa0715510 | Msa0901820 | 0.814298 | 1.654149e-51 | -8.615850e-47 |
| Msa0748980 | Msa0901820 | -0.820436 | 6.867403e-53 | -8.615850e-47 |
| Msa0766860 | Msa0901820 | 0.801151 | 1.030702e-48 | -8.615850e-47 |
| Msa0771910 | Msa0901820 | 0.804560 | 2.037069e-49 | -8.615850e-47 |
| Msa0803530 | Msa0901820 | -0.802250 | 6.133558e-49 | -8.615850e-47 |
| Msa0810080 | Msa0901820 | 0.809740 | 1.629766e-50 | -8.615850e-47 |
| Msa0825520 | Msa0901820 | -0.816113 | 6.536081e-52 | -8.615850e-47 |
| Msa0126130 | Msa0901820 | 0.821591 | 3.722970e-53 | -8.615850e-47 |
| Msa0131090 | Msa0901820 | -0.810535 | 1.098630e-50 | -8.615850e-47 |
| Msa0147680 | Msa0901820 | 0.812564 | 3.979693e-51 | -8.615850e-47 |
| Msa0163960 | Msa0901820 | -0.804053 | 2.597700e-49 | -8.615850e-47 |
| Msa0171060 | Msa0901820 | 0.802701 | 4.952411e-49 | -8.615850e-47 |
| Msa0195140 | Msa0901820 | -0.820243 | 7.600947e-53 | -8.615850e-47 |
| Msa0367590 | Msa0901820 | -0.802323 | 5.924637e-49 | -8.615850e-47 |
| Msa0240590 | Msa0901820 | -0.813730 | 2.207390e-51 | -8.615850e-47 |
| Msa0279090 | Msa0901820 | -0.808060 | 3.728542e-50 | -8.615850e-47 |
| Msa0295680 | Msa0901820 | 0.800137 | 1.659376e-48 | -8.615850e-47 |
| Msa0565760 | Msa0901820 | -0.809500 | 1.835148e-50 | -8.615850e-47 |
| Msa0565860 | Msa0901820 | -0.816631 | 5.005040e-52 | -8.615850e-47 |
| Msa0579170 | Msa0901820 | -0.815151 | 1.070795e-51 | -8.615850e-47 |
| Msa0579230 | Msa0901820 | -0.814644 | 1.386838e-51 | -8.615850e-47 |
| Msa0850600 | Msa0901820 | 0.832196 | 1.084917e-55 | -8.615850e-47 |
| Msa0864730 | Msa0901820 | -0.822637 | 2.129151e-53 | -8.615850e-47 |
| Msa0864750 | Msa0901820 | -0.822589 | 2.185326e-53 | -8.615850e-47 |
| Msa0887100 | Msa0901820 | -0.811172 | 7.997335e-51 | -8.615850e-47 |
| Msa0901820 | Msa0950470 | -0.836083 | 1.151840e-56 | -8.615850e-47 |
| Msa0901820 | Msa0950570 | -0.842288 | 2.833580e-58 | -8.615850e-47 |
| Msa0901820 | Msa0966830 | 0.858393 | 8.493688e-63 | -8.615850e-47 |
| Msa0901820 | Msa0966920 | 0.973241 | 4.264804e-136 | -8.615850e-47 |
| Msa0901820 | Msa1001050 | 0.864523 | 1.143567e-64 | -8.615850e-47 |
| Msa0901820 | Msa1031530 | -0.806351 | 8.581043e-50 | -8.615850e-47 |
| Msa0901820 | Msa1032740 | 0.805239 | 1.469175e-49 | -8.615850e-47 |
| Msa0901820 | Msa1070360 | 0.806108 | 9.651971e-50 | -8.615850e-47 |
| Msa0901820 | Msa1078300 | 0.809569 | 1.773824e-50 | -8.615850e-47 |
| Msa0901820 | Msa1088740 | -0.803842 | 2.873571e-49 | -8.615850e-47 |
| Msa0901820 | Msa1190350 | -0.820018 | 8.559392e-53 | -8.615850e-47 |
| Msa0901820 | Msa1236860 | -0.805352 | 1.391236e-49 | -8.615850e-47 |
| Msa0901820 | Msa1317240 | -0.801976 | 6.982502e-49 | -8.615850e-47 |
| Msa0901820 | Msa1369180 | -0.809221 | 2.106276e-50 | -8.615850e-47 |
| Msa0901820 | Msa1384620 | -0.817359 | 3.435832e-52 | -8.615850e-47 |
| Msa0901820 | Msa1450780 | -0.800714 | 1.265998e-48 | -8.615850e-47 |
| Msa0901820 | Msa1460530 | -0.802944 | 4.411834e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901820 | MtrunA17_Chr6g0487371 | 97.872 | 423 | 9 | 0 | 1 | 423 | 1 | 423 | 0.0 | 860 |
| Msa0901820 | MtrunA17_Chr3g0140721 | 51.724 | 464 | 168 | 11 | 1 | 420 | 1 | 452 | 5.91e-145 | 420 |
| Msa0901820 | MtrunA17_Chr5g0393941 | 42.377 | 446 | 194 | 13 | 1 | 414 | 64 | 478 | 6.88e-95 | 293 |
| Msa0901820 | MtrunA17_Chr8g0389691 | 69.841 | 189 | 45 | 3 | 237 | 419 | 1 | 183 | 1.03e-86 | 262 |
| Msa0901820 | MtrunA17_Chr8g0337321 | 36.136 | 440 | 223 | 11 | 1 | 412 | 1 | 410 | 3.33e-72 | 233 |
| Msa0901820 | MtrunA17_Chr8g0389701 | 56.250 | 144 | 59 | 1 | 64 | 207 | 26 | 165 | 5.79e-50 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901820 | AT4G29310.1 | 65.589 | 433 | 128 | 9 | 1 | 422 | 1 | 423 | 0.0 | 551 |
| Msa0901820 | AT4G29310.2 | 64.350 | 331 | 102 | 7 | 1 | 322 | 1 | 324 | 6.02e-146 | 418 |
| Msa0901820 | AT1G10020.1 | 49.254 | 469 | 175 | 12 | 1 | 417 | 1 | 458 | 1.39e-132 | 389 |
| Msa0901820 | AT3G19680.1 | 43.089 | 492 | 204 | 10 | 1 | 420 | 1 | 488 | 5.27e-107 | 325 |
| Msa0901820 | AT1G50040.1 | 41.901 | 463 | 208 | 10 | 1 | 414 | 1 | 451 | 4.82e-93 | 288 |
| Msa0901820 | AT5G17640.1 | 38.140 | 430 | 227 | 9 | 1 | 404 | 1 | 417 | 5.78e-83 | 261 |
Find 111 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCGGAGCTGGTGGTTTC+AGG | 0.223787 | 6_1:-98663710 | None:intergenic |
| TGTTGGTGATGGAAGGTTTA+GGG | 0.274468 | 6_1:-98663561 | None:intergenic |
| ATCCACAATGAATGTGAAAA+AGG | 0.295332 | 6_1:+98668168 | Msa0901820:CDS |
| TTGTTGGTGATGGAAGGTTT+AGG | 0.311492 | 6_1:-98663562 | None:intergenic |
| GTGGTTTGAGAAGGGAAATT+TGG | 0.319386 | 6_1:-98663653 | None:intergenic |
| AAGACATGAAAGGTATGTTT+TGG | 0.333797 | 6_1:-98663464 | None:intergenic |
| ATCCATTGTTCTTTGTTGTT+TGG | 0.340336 | 6_1:-98663501 | None:intergenic |
| CTCGGGTTCATTTCGTGGTT+CGG | 0.344710 | 6_1:+98663972 | Msa0901820:CDS |
| TGCTGCTATTGATCTTAGTA+TGG | 0.353674 | 6_1:+98668381 | Msa0901820:CDS |
| AGTATTATGGATTGTGTTCA+AGG | 0.354254 | 6_1:+98668227 | Msa0901820:CDS |
| TTGCAAACACTCCTAGTAGA+TGG | 0.381223 | 6_1:+98667834 | Msa0901820:CDS |
| CATTATAATCAATGCAGAAT+TGG | 0.384100 | 6_1:-98668195 | None:intergenic |
| AATGTTATGAAAGAGTATTA+TGG | 0.388839 | 6_1:+98668214 | Msa0901820:CDS |
| TTCATTGTGGATTCAGCTAT+AGG | 0.393565 | 6_1:-98668157 | None:intergenic |
| CTACTCACTGAGGCGCCGTT+TGG | 0.396234 | 6_1:-98668037 | None:intergenic |
| TTGGTTTATGTAATAAGATT+TGG | 0.398565 | 6_1:-98663445 | None:intergenic |
| CAAGGTTACCACCAGGTAAA+GGG | 0.410973 | 6_1:+98668245 | Msa0901820:CDS |
| CATGGTATTGTTGTTGTTGA+AGG | 0.422188 | 6_1:-98663611 | None:intergenic |
| TGTGCACCAACTTGCACAAA+AGG | 0.427169 | 6_1:-98668313 | None:intergenic |
| CGAGCCGAATCCTTCTTTCC+CGG | 0.431922 | 6_1:-98663953 | None:intergenic |
| GTCTGTGTATGCTGGAAGCA+TGG | 0.433665 | 6_1:+98663796 | Msa0901820:CDS |
| ACCATTGAGGCTGCAGCAAC+CGG | 0.435726 | 6_1:-98667941 | None:intergenic |
| CACACCATTTGTCCCATCCC+CGG | 0.436841 | 6_1:+98667964 | Msa0901820:CDS |
| CTGCGTTTGTCTGTGTATGC+TGG | 0.445120 | 6_1:+98663788 | Msa0901820:CDS |
| GTGGAAACCATCAGCGGAGC+TGG | 0.455014 | 6_1:-98663720 | None:intergenic |
| ATCACAAGTTCGAAGCTCTT+AGG | 0.455739 | 6_1:+98663833 | Msa0901820:CDS |
| TTCGGCTCGGGTTCATTTCG+TGG | 0.456979 | 6_1:+98663967 | Msa0901820:CDS |
| AAGAGGTCATGTAGATGGCT+TGG | 0.464790 | 6_1:+98668096 | Msa0901820:CDS |
| ACACTCCTAGTAGATGGAAA+AGG | 0.466520 | 6_1:+98667840 | Msa0901820:CDS |
| CTCTGTCTGAGCCCGGGGAT+GGG | 0.471475 | 6_1:-98667976 | None:intergenic |
| CAGTTATGTTTCATAGTGGA+TGG | 0.475543 | 6_1:+98663900 | Msa0901820:CDS |
| CTTGATACTCTGTCTGAGCC+CGG | 0.475731 | 6_1:-98667983 | None:intergenic |
| TCAAGGTTACCACCAGGTAA+AGG | 0.476377 | 6_1:+98668244 | Msa0901820:CDS |
| AGGGTTTGAACCGGGAAAGA+AGG | 0.477281 | 6_1:+98663943 | Msa0901820:CDS |
| ACGGCGCCTCAGTGAGTAGC+TGG | 0.485041 | 6_1:+98668041 | Msa0901820:CDS |
| CACTCCTAGTAGATGGAAAA+GGG | 0.485668 | 6_1:+98667841 | Msa0901820:CDS |
| GTGATGAGTTCTAGTGTTGA+AGG | 0.486355 | 6_1:+98668271 | Msa0901820:CDS |
| ACCGGTTGCTGCAGCCTCAA+TGG | 0.487378 | 6_1:+98667940 | Msa0901820:CDS |
| ACACCATTTGTCCCATCCCC+GGG | 0.490416 | 6_1:+98667965 | Msa0901820:CDS |
| ACTCTGTCTGAGCCCGGGGA+TGG | 0.491390 | 6_1:-98667977 | None:intergenic |
| CATAGTGGATGGCTTGTGTT+GGG | 0.492304 | 6_1:+98663911 | Msa0901820:CDS |
| TTGATACTCTGTCTGAGCCC+GGG | 0.494151 | 6_1:-98667982 | None:intergenic |
| TCAACTGTTAGACGTACAAA+TGG | 0.494581 | 6_1:-98663530 | None:intergenic |
| AGAGGTCATGTAGATGGCTT+GGG | 0.495477 | 6_1:+98668097 | Msa0901820:CDS |
| AATAAGATTTGGTGTTGAAA+AGG | 0.496701 | 6_1:-98663434 | None:intergenic |
| GGAAGAAGTGTGGTTTGAGA+AGG | 0.497031 | 6_1:-98663662 | None:intergenic |
| CGAAGAATTAGCCATGCGCC+GGG | 0.497196 | 6_1:-98668013 | None:intergenic |
| AGAGAAAGAGGTCATGTAGA+TGG | 0.497449 | 6_1:+98668091 | Msa0901820:CDS |
| GCGTCACGGACGAGAAAGAA+AGG | 0.497933 | 6_1:+98667883 | Msa0901820:CDS |
| ATAACAGTTCACGATCTCTC+TGG | 0.506176 | 6_1:+98667914 | Msa0901820:CDS |
| TGAACCGGGAAAGAAGGATT+CGG | 0.506902 | 6_1:+98663949 | Msa0901820:CDS |
| GTAGTTTAAGAAAGAGGGTG+TGG | 0.512771 | 6_1:-98663397 | None:intergenic |
| ACAGACAAACGCAGAGGGAT+AGG | 0.513376 | 6_1:-98663779 | None:intergenic |
| TCACGATCTCTCTGGTTCAC+CGG | 0.513554 | 6_1:+98667922 | Msa0901820:CDS |
| GAGCCCGGGGATGGGACAAA+TGG | 0.513648 | 6_1:-98667968 | None:intergenic |
| TCATAGTGGATGGCTTGTGT+TGG | 0.515970 | 6_1:+98663910 | Msa0901820:CDS |
| AGGGAAATTTGGTATATGAA+TGG | 0.516982 | 6_1:-98663642 | None:intergenic |
| GTTTCGTAGTTTAAGAAAGA+GGG | 0.522168 | 6_1:-98663402 | None:intergenic |
| AAAACCACCGGACTACATTC+CGG | 0.522926 | 6_1:-98664037 | None:intergenic |
| AGTTTCGTAGTTTAAGAAAG+AGG | 0.522978 | 6_1:-98663403 | None:intergenic |
| TCAAGAGAATATTAGACAGC+CGG | 0.523927 | 6_1:+98664066 | Msa0901820:CDS |
| GAAGAAGTGTGGTTTGAGAA+GGG | 0.529695 | 6_1:-98663661 | None:intergenic |
| GGGAAAGAAGGATTCGGCTC+GGG | 0.533415 | 6_1:+98663955 | Msa0901820:CDS |
| AATGCACTCCAGCGTCTCAC+AGG | 0.544235 | 6_1:+98663752 | Msa0901820:CDS |
| CGTTCAGTTATGTTTCATAG+TGG | 0.545140 | 6_1:+98663896 | Msa0901820:CDS |
| GATGAAGATGATGAAGAGAG+TGG | 0.546238 | 6_1:-98663683 | None:intergenic |
| TGGCTAATTCTTCGTCCAAA+CGG | 0.547768 | 6_1:+98668022 | Msa0901820:CDS |
| CAGTGAGTAGCTGGAAACCA+TGG | 0.547889 | 6_1:+98668050 | Msa0901820:CDS |
| TTAGAAGCATGGAGAGAAAG+AGG | 0.550587 | 6_1:+98668079 | Msa0901820:CDS |
| CTGATCGAAATTCTAGATCA+AGG | 0.551265 | 6_1:+98664110 | Msa0901820:CDS |
| AGGTGAACCGGAATGTAGTC+CGG | 0.552686 | 6_1:+98664030 | Msa0901820:CDS |
| AGTGAGTAGCTGGAAACCAT+GGG | 0.554092 | 6_1:+98668051 | Msa0901820:CDS |
| CAAGATCAAACCCCGGCGCA+TGG | 0.560299 | 6_1:+98668002 | Msa0901820:CDS |
| TAGGTTTGCCTGTGAGACGC+TGG | 0.562906 | 6_1:-98663760 | None:intergenic |
| TGCACAACATGTTACATGTA+TGG | 0.563106 | 6_1:+98668330 | Msa0901820:CDS |
| ACGAAGAATTAGCCATGCGC+CGG | 0.565487 | 6_1:-98668014 | None:intergenic |
| CTCATCACAAACCCTTTACC+TGG | 0.570924 | 6_1:-98668256 | None:intergenic |
| GAAACCACCAGCTCCGCTGA+TGG | 0.570979 | 6_1:+98663713 | Msa0901820:CDS |
| CATGGGGACGTTTAGAAGCA+TGG | 0.571889 | 6_1:+98668068 | Msa0901820:CDS |
| TGTGAGACGCTGGAGTGCAT+TGG | 0.575230 | 6_1:-98663750 | None:intergenic |
| GCTGGAGTGCATTGGAGTCG+AGG | 0.584687 | 6_1:-98663742 | None:intergenic |
| GAACTCGTAACCGAAAATAA+CGG | 0.585112 | 6_1:+98668130 | Msa0901820:CDS |
| AGTTCTAGTGTTGAAGGTGA+AGG | 0.591958 | 6_1:+98668277 | Msa0901820:CDS |
| TCTGTGTATGCTGGAAGCAT+GGG | 0.592421 | 6_1:+98663797 | Msa0901820:CDS |
| AACCAAACAACAAAGAACAA+TGG | 0.593579 | 6_1:+98663499 | Msa0901820:exon |
| TGAAGAGAGTGGAAGAAGTG+TGG | 0.595218 | 6_1:-98663672 | None:intergenic |
| CGGGAAAGAAGGATTCGGCT+CGG | 0.598341 | 6_1:+98663954 | Msa0901820:CDS |
| GAAGGATGAATACGTGAAAG+TGG | 0.601146 | 6_1:-98663593 | None:intergenic |
| TTCGGTCTGAACCAGATCCA+CGG | 0.603505 | 6_1:+98663990 | Msa0901820:CDS |
| ACGGACGAGAAAGAAAGGGT+TGG | 0.607719 | 6_1:+98667888 | Msa0901820:CDS |
| TGATACTCTGTCTGAGCCCG+GGG | 0.608826 | 6_1:-98667981 | None:intergenic |
| GGAAGCATGGGTCGAACTTG+TGG | 0.617042 | 6_1:+98663809 | Msa0901820:CDS |
| GAAACCATCAGCGGAGCTGG+TGG | 0.618402 | 6_1:-98663717 | None:intergenic |
| CAATTGTTTGAAGACATGAA+AGG | 0.628073 | 6_1:-98663474 | None:intergenic |
| CGTCACGGACGAGAAAGAAA+GGG | 0.630621 | 6_1:+98667884 | Msa0901820:CDS |
| CATGCTTCTAAACGTCCCCA+TGG | 0.635204 | 6_1:-98668067 | None:intergenic |
| TGAATACGTGAAAGTGGTGA+TGG | 0.640926 | 6_1:-98663587 | None:intergenic |
| TTGTGTTCAAGGTTACCACC+AGG | 0.654136 | 6_1:+98668238 | Msa0901820:CDS |
| CATACACAGACAAACGCAGA+GGG | 0.668520 | 6_1:-98663784 | None:intergenic |
| AAAAGTGTTCAAGAGCGTCA+CGG | 0.669596 | 6_1:+98667869 | Msa0901820:CDS |
| GGAGTGCATTGGAGTCGAGG+TGG | 0.675035 | 6_1:-98663739 | None:intergenic |
| ATCACAAACCCTTTACCTGG+TGG | 0.684939 | 6_1:-98668253 | None:intergenic |
| TGAACCGGAATGTAGTCCGG+TGG | 0.695792 | 6_1:+98664033 | Msa0901820:CDS |
| GACAAATGGTGTGACCATTG+AGG | 0.703421 | 6_1:-98667954 | None:intergenic |
| GTCGAGGTGGAAACCATCAG+CGG | 0.705214 | 6_1:-98663726 | None:intergenic |
| AGAGTATCAAGATCAAACCC+CGG | 0.719340 | 6_1:+98667995 | Msa0901820:CDS |
| GAAGAATTAGCCATGCGCCG+GGG | 0.725892 | 6_1:-98668012 | None:intergenic |
| GCATACACAGACAAACGCAG+AGG | 0.737316 | 6_1:-98663785 | None:intergenic |
| GTGAGTAGCTGGAAACCATG+GGG | 0.739154 | 6_1:+98668052 | Msa0901820:CDS |
| GATCAATATTAACAACAACA+CGG | 0.741783 | 6_1:-98663856 | None:intergenic |
| TGGTTTCCAGCTACTCACTG+AGG | 0.744962 | 6_1:-98668047 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTATCATATTATTAAA+AGG | + | chr6_1:98664582-98664601 | Msa0901820:intron | 10.0% |
| !! | AAAAAAAATTAACAAAATAG+GGG | + | chr6_1:98664963-98664982 | Msa0901820:intron | 10.0% |
| !!! | GTTAATTAATTTTTTTTTGA+AGG | - | chr6_1:98665902-98665921 | None:intergenic | 10.0% |
| !! | TTAATTAACAAAGATAATTA+TGG | + | chr6_1:98665913-98665932 | Msa0901820:intron | 10.0% |
| !!! | AAAAATACTTAGTTTAAAAT+TGG | - | chr6_1:98667079-98667098 | None:intergenic | 10.0% |
| !! | TTAAATTTATAAATCTACCA+TGG | - | chr6_1:98664198-98664217 | None:intergenic | 15.0% |
| !! | ATCATATTATTAAAAGGAAA+AGG | + | chr6_1:98664588-98664607 | Msa0901820:intron | 15.0% |
| !! | TTTATAAAGATGACTTTATA+AGG | - | chr6_1:98664866-98664885 | None:intergenic | 15.0% |
| !!! | AATTAATTATTTCATTTTCC+TGG | + | chr6_1:98664903-98664922 | Msa0901820:intron | 15.0% |
| !! | ATCAAATTAATTGACTAAAT+AGG | + | chr6_1:98664936-98664955 | Msa0901820:intron | 15.0% |
| !!! | TTAATTTTTTCTGTTTCAAA+TGG | - | chr6_1:98665155-98665174 | None:intergenic | 15.0% |
| !!! | ACGATTTTAAATATTTTGAT+TGG | - | chr6_1:98666517-98666536 | None:intergenic | 15.0% |
| !!! | ATTAGTGTTTTTAATTTATG+TGG | + | chr6_1:98666544-98666563 | Msa0901820:intron | 15.0% |
| !! | ATTAAAAAGAGTTTAATGAT+GGG | - | chr6_1:98666616-98666635 | None:intergenic | 15.0% |
| !! | TATTAAAAAGAGTTTAATGA+TGG | - | chr6_1:98666617-98666636 | None:intergenic | 15.0% |
| !! | TATCTCTATTAAACATATTT+AGG | + | chr6_1:98666748-98666767 | Msa0901820:intron | 15.0% |
| !! | AAACATAATAATTTAGTAGT+TGG | - | chr6_1:98667235-98667254 | None:intergenic | 15.0% |
| !!! | ATCAATTTTTTTTATCTTTC+AGG | + | chr6_1:98667795-98667814 | Msa0901820:intron | 15.0% |
| !! | TTGGTTTATGTAATAAGATT+TGG | - | chr6_1:98663448-98663467 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTGTGTTCACAT+TGG | + | chr6_1:98664231-98664250 | Msa0901820:intron | 20.0% |
| !!! | TCTTTAAAAATCAAACGATT+TGG | + | chr6_1:98664259-98664278 | Msa0901820:intron | 20.0% |
| !! | TTAAAAGTGACTATTGAAAA+TGG | + | chr6_1:98664359-98664378 | Msa0901820:intron | 20.0% |
| !! | ACTATTGAAAATGGTTAAAT+CGG | + | chr6_1:98664368-98664387 | Msa0901820:intron | 20.0% |
| !! | CACTATCAGAAAAAATTAAA+TGG | + | chr6_1:98664559-98664578 | Msa0901820:intron | 20.0% |
| !!! | TTTTATGTTGGTTGAAAAAA+TGG | + | chr6_1:98664618-98664637 | Msa0901820:intron | 20.0% |
| !!! | AATTAAGATCTTGTGTATTT+TGG | - | chr6_1:98665114-98665133 | None:intergenic | 20.0% |
| !! | AAAATACACAAGATCTTAAT+TGG | + | chr6_1:98665113-98665132 | Msa0901820:intron | 20.0% |
| !! | AAATACACAAGATCTTAATT+GGG | + | chr6_1:98665114-98665133 | Msa0901820:intron | 20.0% |
| !!! | AAAAATTAAAGCTTTGTACA+CGG | + | chr6_1:98665166-98665185 | Msa0901820:intron | 20.0% |
| !! | ATTAACAAAGATAATTATGG+TGG | + | chr6_1:98665916-98665935 | Msa0901820:intron | 20.0% |
| !! | TAATGTATAGTTTAAGCTTA+TGG | + | chr6_1:98666013-98666032 | Msa0901820:intron | 20.0% |
| !! | AATGTATAGTTTAAGCTTAT+GGG | + | chr6_1:98666014-98666033 | Msa0901820:intron | 20.0% |
| !!! | AATTATGACTTTGATGATTA+AGG | + | chr6_1:98666355-98666374 | Msa0901820:intron | 20.0% |
| !! | AATTGTACCATATCATATTA+TGG | + | chr6_1:98666442-98666461 | Msa0901820:intron | 20.0% |
| !!! | TTAAATATTTTGATTGGTTG+TGG | - | chr6_1:98666511-98666530 | None:intergenic | 20.0% |
| !! | AAAAAAAAACCAGAATTTGA+GGG | - | chr6_1:98666781-98666800 | None:intergenic | 20.0% |
| !! | AAAAAAAAAACCAGAATTTG+AGG | - | chr6_1:98666782-98666801 | None:intergenic | 20.0% |
| !! | CACATTTATGATATGTTATA+TGG | - | chr6_1:98666928-98666947 | None:intergenic | 20.0% |
| !!! | CTAATTTAAAGTAAAATCCA+TGG | + | chr6_1:98666989-98667008 | Msa0901820:intron | 20.0% |
| !! | TATAAACCAATGACAAAAAT+CGG | + | chr6_1:98667550-98667569 | Msa0901820:intron | 20.0% |
| !!! | AATGTTATGAAAGAGTATTA+TGG | + | chr6_1:98668214-98668233 | Msa0901820:CDS | 20.0% |
| !!! | AATAAGATTTGGTGTTGAAA+AGG | - | chr6_1:98663437-98663456 | None:intergenic | 25.0% |
| ! | GATCAATATTAACAACAACA+CGG | - | chr6_1:98663859-98663878 | None:intergenic | 25.0% |
| ! | CTAAATTTGCAACTAAAAAC+CGG | - | chr6_1:98664088-98664107 | None:intergenic | 25.0% |
| !!! | ATCGTTTGATTTTTAAAGAG+TGG | - | chr6_1:98664258-98664277 | None:intergenic | 25.0% |
| !!! | ATCAAACGATTTGGTTAAAT+CGG | + | chr6_1:98664268-98664287 | Msa0901820:intron | 25.0% |
| !!! | CAATAGTCACTTTTAACTAT+TGG | - | chr6_1:98664355-98664374 | None:intergenic | 25.0% |
| !!! | CAATAGTCACTTTTAACTAT+TGG | - | chr6_1:98664355-98664374 | None:intergenic | 25.0% |
| !! | AAAGGAAAATGCTTTTATGT+TGG | + | chr6_1:98664606-98664625 | Msa0901820:intron | 25.0% |
| ! | AGTAGATTTGATAGATTGTT+TGG | + | chr6_1:98664768-98664787 | Msa0901820:intron | 25.0% |
| ! | AAGATGACTTTATAAGGTAA+GGG | - | chr6_1:98664860-98664879 | None:intergenic | 25.0% |
| ! | AAAGATGACTTTATAAGGTA+AGG | - | chr6_1:98664861-98664880 | None:intergenic | 25.0% |
| ! | AATACACAAGATCTTAATTG+GGG | + | chr6_1:98665115-98665134 | Msa0901820:intron | 25.0% |
| !! | TGATATCTTCATTAGTTCTT+TGG | - | chr6_1:98665860-98665879 | None:intergenic | 25.0% |
| !! | GTGGGTTAATTAATTAACTA+TGG | + | chr6_1:98665978-98665997 | Msa0901820:intron | 25.0% |
| ! | GATTAAATGACATATATGGT+AGG | - | chr6_1:98666070-98666089 | None:intergenic | 25.0% |
| !! | ACCATATATGTCATTTAATC+AGG | + | chr6_1:98666070-98666089 | Msa0901820:intron | 25.0% |
| ! | ACCTGATTAAATGACATATA+TGG | - | chr6_1:98666074-98666093 | None:intergenic | 25.0% |
| ! | CAAATGAAATGAGTACAAAA+TGG | - | chr6_1:98666172-98666191 | None:intergenic | 25.0% |
| !! | CATTTTGTACTCATTTCATT+TGG | + | chr6_1:98666170-98666189 | Msa0901820:intron | 25.0% |
| ! | TAATACAAAACTTGTGGATA+GGG | - | chr6_1:98666309-98666328 | None:intergenic | 25.0% |
| ! | ATCATCAAAGTCATAATTGA+GGG | - | chr6_1:98666353-98666372 | None:intergenic | 25.0% |
| ! | AATCATCAAAGTCATAATTG+AGG | - | chr6_1:98666354-98666373 | None:intergenic | 25.0% |
| ! | GTTTACACCATAATATGATA+TGG | - | chr6_1:98666452-98666471 | None:intergenic | 25.0% |
| !! | CTGTTTATTTAAGGTTGAAA+AGG | - | chr6_1:98666961-98666980 | None:intergenic | 25.0% |
| ! | GAGAAGTTTCTGTTTATTTA+AGG | - | chr6_1:98666970-98666989 | None:intergenic | 25.0% |
| !! | TTTTTCCCACTTATTCTTTA+AGG | + | chr6_1:98667094-98667113 | Msa0901820:intron | 25.0% |
| !!! | ATTTTTTCACAAGGACATAA+AGG | - | chr6_1:98667127-98667146 | None:intergenic | 25.0% |
| !! | TTTGACACAACTAATTTTGT+AGG | + | chr6_1:98667506-98667525 | Msa0901820:intron | 25.0% |
| !!! | TTTTTATCTTTCAGGTCTAA+TGG | + | chr6_1:98667803-98667822 | Msa0901820:intron | 25.0% |
| !!! | TATAGGTATTCCGTTATTTT+CGG | - | chr6_1:98668143-98668162 | None:intergenic | 25.0% |
| ! | CATTATAATCAATGCAGAAT+TGG | - | chr6_1:98668198-98668217 | None:intergenic | 25.0% |
| GTTTCGTAGTTTAAGAAAGA+GGG | - | chr6_1:98663405-98663424 | None:intergenic | 30.0% | |
| AGTTTCGTAGTTTAAGAAAG+AGG | - | chr6_1:98663406-98663425 | None:intergenic | 30.0% | |
| !! | AAGACATGAAAGGTATGTTT+TGG | - | chr6_1:98663467-98663486 | None:intergenic | 30.0% |
| CAATTGTTTGAAGACATGAA+AGG | - | chr6_1:98663477-98663496 | None:intergenic | 30.0% | |
| AACCAAACAACAAAGAACAA+TGG | + | chr6_1:98663499-98663518 | Msa0901820:exon | 30.0% | |
| !! | ATCCATTGTTCTTTGTTGTT+TGG | - | chr6_1:98663504-98663523 | None:intergenic | 30.0% |
| ATATGAATGGTGCAAAAACA+TGG | - | chr6_1:98663632-98663651 | None:intergenic | 30.0% | |
| AGGGAAATTTGGTATATGAA+TGG | - | chr6_1:98663645-98663664 | None:intergenic | 30.0% | |
| TTGTGTTGGGAAAAAAGAAA+GGG | + | chr6_1:98663924-98663943 | Msa0901820:CDS | 30.0% | |
| AAAAAAGAAAGGGTTTGAAC+CGG | + | chr6_1:98663934-98663953 | Msa0901820:CDS | 30.0% | |
| CTATGAACTAAAGCTTTCTA+TGG | + | chr6_1:98664296-98664315 | Msa0901820:intron | 30.0% | |
| CTTTCTATGGTTTAGCTATT+TGG | + | chr6_1:98664309-98664328 | Msa0901820:intron | 30.0% | |
| CTATGAACTAAAGCTTTCTA+TGG | + | chr6_1:98664296-98664315 | Msa0901820:intron | 30.0% | |
| CTTTCTATGGTTTAGCTATT+TGG | + | chr6_1:98664309-98664328 | Msa0901820:intron | 30.0% | |
| GAAATTGTGAAGAGAGAAAT+AGG | + | chr6_1:98664705-98664724 | Msa0901820:intron | 30.0% | |
| ! | AATTTGATAATAGCAACACC+AGG | - | chr6_1:98664924-98664943 | None:intergenic | 30.0% |
| !!! | AGGGGAGTTTTTTTTTCTTT+CGG | + | chr6_1:98664981-98665000 | Msa0901820:intron | 30.0% |
| GCTTAAATGGAAAACAACTA+AGG | - | chr6_1:98665092-98665111 | None:intergenic | 30.0% | |
| !!! | CTTGTGTATTTTGGCTTAAA+TGG | - | chr6_1:98665105-98665124 | None:intergenic | 30.0% |
| ATATCTTCATTACTGCCATA+TGG | - | chr6_1:98665228-98665247 | None:intergenic | 30.0% | |
| AATAATAGTAAGGGTAGAAC+AGG | + | chr6_1:98665283-98665302 | Msa0901820:intron | 30.0% | |
| AGGAAACAAAAAAATGAAGC+TGG | + | chr6_1:98665303-98665322 | Msa0901820:intron | 30.0% | |
| ! | TGTTTGTTTGAGGTGAAATA+GGG | - | chr6_1:98665477-98665496 | None:intergenic | 30.0% |
| TTAATTAACCCACCATAATG+TGG | - | chr6_1:98665971-98665990 | None:intergenic | 30.0% | |
| CTTTGCTTGTCAATATCTTT+AGG | + | chr6_1:98666037-98666056 | Msa0901820:intron | 30.0% | |
| ! | GTGTCAAGTAAACATGTTTT+TGG | - | chr6_1:98666252-98666271 | None:intergenic | 30.0% |
| CTAATACAAAACTTGTGGAT+AGG | - | chr6_1:98666310-98666329 | None:intergenic | 30.0% | |
| !! | CTATCCACAAGTTTTGTATT+AGG | + | chr6_1:98666308-98666327 | Msa0901820:intron | 30.0% |
| !!! | GCAATTCAGAATGTTTTGAT+TGG | + | chr6_1:98666566-98666585 | Msa0901820:intron | 30.0% |
| ! | TTACGTATGCAAAGTTGTTT+TGG | + | chr6_1:98666589-98666608 | Msa0901820:intron | 30.0% |
| TTAATCTTAAAGAGTCTCTG+AGG | - | chr6_1:98666662-98666681 | None:intergenic | 30.0% | |
| GAGTACCTTAAAGAATAAGT+GGG | - | chr6_1:98667102-98667121 | None:intergenic | 30.0% | |
| TGAGTACCTTAAAGAATAAG+TGG | - | chr6_1:98667103-98667122 | None:intergenic | 30.0% | |
| !!! | AAAGGGGAAATTTTTTCACA+AGG | - | chr6_1:98667136-98667155 | None:intergenic | 30.0% |
| !! | AGTGGACTTTAATTTGAAAG+GGG | - | chr6_1:98667152-98667171 | None:intergenic | 30.0% |
| !! | GAGTGGACTTTAATTTGAAA+GGG | - | chr6_1:98667153-98667172 | None:intergenic | 30.0% |
| !! | TGAGTGGACTTTAATTTGAA+AGG | - | chr6_1:98667154-98667173 | None:intergenic | 30.0% |
| AAGTCCACTCATTTAAAAAC+AGG | + | chr6_1:98667163-98667182 | Msa0901820:intron | 30.0% | |
| !!! | TGAACCTGTTTTTAAATGAG+TGG | - | chr6_1:98667170-98667189 | None:intergenic | 30.0% |
| GTTGCATATATAACCAGATT+TGG | + | chr6_1:98667277-98667296 | Msa0901820:intron | 30.0% | |
| GACAGTTATGTATCATAGTT+TGG | - | chr6_1:98667326-98667345 | None:intergenic | 30.0% | |
| ACTATGATACATAACTGTCA+TGG | + | chr6_1:98667327-98667346 | Msa0901820:intron | 30.0% | |
| AGAGACATATGAAAATCGAA+CGG | - | chr6_1:98667770-98667789 | None:intergenic | 30.0% | |
| ATCCACAATGAATGTGAAAA+AGG | + | chr6_1:98668168-98668187 | Msa0901820:CDS | 30.0% | |
| TCCACAATGAATGTGAAAAA+GGG | + | chr6_1:98668169-98668188 | Msa0901820:CDS | 30.0% | |
| ! | AGTATTATGGATTGTGTTCA+AGG | + | chr6_1:98668227-98668246 | Msa0901820:CDS | 30.0% |
| ! | AGCTTTTCTCTCATAAACTT+AGG | + | chr6_1:98668413-98668432 | Msa0901820:CDS | 30.0% |
| TCAACTGTTAGACGTACAAA+TGG | - | chr6_1:98663533-98663552 | None:intergenic | 35.0% | |
| ! | CATGGTATTGTTGTTGTTGA+AGG | - | chr6_1:98663614-98663633 | None:intergenic | 35.0% |
| CGTTCAGTTATGTTTCATAG+TGG | + | chr6_1:98663896-98663915 | Msa0901820:CDS | 35.0% | |
| ! | CAGTTATGTTTCATAGTGGA+TGG | + | chr6_1:98663900-98663919 | Msa0901820:CDS | 35.0% |
| CTTGTGTTGGGAAAAAAGAA+AGG | + | chr6_1:98663923-98663942 | Msa0901820:CDS | 35.0% | |
| AAAAAGAAAGGGTTTGAACC+GGG | + | chr6_1:98663935-98663954 | Msa0901820:CDS | 35.0% | |
| CCAAATTGAAAAACAAACCG+TGG | - | chr6_1:98664010-98664029 | None:intergenic | 35.0% | |
| !! | CCACGGTTTGTTTTTCAATT+TGG | + | chr6_1:98664007-98664026 | Msa0901820:CDS | 35.0% |
| !! | CGGTTTGTTTTTCAATTTGG+AGG | + | chr6_1:98664010-98664029 | Msa0901820:CDS | 35.0% |
| ! | TTTTCAATTTGGAGGTGAAC+CGG | + | chr6_1:98664018-98664037 | Msa0901820:CDS | 35.0% |
| TCTTGAATCTGAAAAACCAC+CGG | - | chr6_1:98664052-98664071 | None:intergenic | 35.0% | |
| TCAAGAGAATATTAGACAGC+CGG | + | chr6_1:98664066-98664085 | Msa0901820:CDS | 35.0% | |
| CTGATCGAAATTCTAGATCA+AGG | + | chr6_1:98664110-98664129 | Msa0901820:CDS | 35.0% | |
| ATTCTAGATCAAGGTGAGTT+TGG | + | chr6_1:98664119-98664138 | Msa0901820:intron | 35.0% | |
| ACAGCTGTATAACATCACTA+CGG | + | chr6_1:98664663-98664682 | Msa0901820:intron | 35.0% | |
| AATGGAAAACAACTAAGGCT+TGG | - | chr6_1:98665087-98665106 | None:intergenic | 35.0% | |
| AGAGACAGCATATAACCATA+TGG | + | chr6_1:98665210-98665229 | Msa0901820:intron | 35.0% | |
| ATGTTAGCGCAGAAACAAAA+AGG | + | chr6_1:98665346-98665365 | Msa0901820:intron | 35.0% | |
| AGAGAGACTGCTTTAATATG+GGG | - | chr6_1:98665379-98665398 | None:intergenic | 35.0% | |
| GAGAGAGACTGCTTTAATAT+GGG | - | chr6_1:98665380-98665399 | None:intergenic | 35.0% | |
| !! | TTTGGTTTGGAAAGAAGTTG+GGG | - | chr6_1:98665402-98665421 | None:intergenic | 35.0% |
| !! | GTTTGGTTTGGAAAGAAGTT+GGG | - | chr6_1:98665403-98665422 | None:intergenic | 35.0% |
| !! | TGTTTGGTTTGGAAAGAAGT+TGG | - | chr6_1:98665404-98665423 | None:intergenic | 35.0% |
| CAAACTTCTTCTGTTTGGTT+TGG | - | chr6_1:98665415-98665434 | None:intergenic | 35.0% | |
| GATGTCAAACTTCTTCTGTT+TGG | - | chr6_1:98665420-98665439 | None:intergenic | 35.0% | |
| ! | GTTTGTTTGAGGTGAAATAG+GGG | - | chr6_1:98665476-98665495 | None:intergenic | 35.0% |
| ! | GTGTTTGTTTGAGGTGAAAT+AGG | - | chr6_1:98665478-98665497 | None:intergenic | 35.0% |
| ATGTAGACTGTGTTTGTTTG+AGG | - | chr6_1:98665487-98665506 | None:intergenic | 35.0% | |
| CACAGTCTACATGACAATAA+AGG | + | chr6_1:98665495-98665514 | Msa0901820:intron | 35.0% | |
| AGGCTCAATAATAATTCCCA+TGG | - | chr6_1:98665550-98665569 | None:intergenic | 35.0% | |
| !! | GATAATTATGGTGGACCATT+TGG | + | chr6_1:98665925-98665944 | Msa0901820:intron | 35.0% |
| CACTTGTAAAACTAGCCAAA+TGG | - | chr6_1:98665943-98665962 | None:intergenic | 35.0% | |
| !!! | CATTTGGCTAGTTTTACAAG+TGG | + | chr6_1:98665941-98665960 | Msa0901820:intron | 35.0% |
| CTTGTCAATATCTTTAGGCT+AGG | + | chr6_1:98666042-98666061 | Msa0901820:intron | 35.0% | |
| ACAGCCTAATACAAAACTTG+TGG | - | chr6_1:98666315-98666334 | None:intergenic | 35.0% | |
| AAGCTTTGCACACTTTCAAT+GGG | + | chr6_1:98666385-98666404 | Msa0901820:intron | 35.0% | |
| ATTAAGACAGACTCAAGACT+CGG | + | chr6_1:98666677-98666696 | Msa0901820:intron | 35.0% | |
| TTCTAACTCAGCAAAAACCA+TGG | - | chr6_1:98667009-98667028 | None:intergenic | 35.0% | |
| ! | GCACGTTTGACATTTTCATT+AGG | + | chr6_1:98667414-98667433 | Msa0901820:intron | 35.0% |
| ! | AGTCATCCGATTTTTGTCAT+TGG | - | chr6_1:98667559-98667578 | None:intergenic | 35.0% |
| GAACTCGTAACCGAAAATAA+CGG | + | chr6_1:98668130-98668149 | Msa0901820:CDS | 35.0% | |
| TTCATTGTGGATTCAGCTAT+AGG | - | chr6_1:98668160-98668179 | None:intergenic | 35.0% | |
| !! | ACCCTTTTTCACATTCATTG+TGG | - | chr6_1:98668173-98668192 | None:intergenic | 35.0% |
| ACAATGAATGTGAAAAAGGG+TGG | + | chr6_1:98668172-98668191 | Msa0901820:CDS | 35.0% | |
| ! | AGTAAACCTTTTGTGCAAGT+TGG | + | chr6_1:98668307-98668326 | Msa0901820:CDS | 35.0% |
| TGCACAACATGTTACATGTA+TGG | + | chr6_1:98668330-98668349 | Msa0901820:CDS | 35.0% | |
| TGCTGCTATTGATCTTAGTA+TGG | + | chr6_1:98668381-98668400 | Msa0901820:CDS | 35.0% | |
| GTAGTTTAAGAAAGAGGGTG+TGG | - | chr6_1:98663400-98663419 | None:intergenic | 40.0% | |
| !! | TGTTGGTGATGGAAGGTTTA+GGG | - | chr6_1:98663564-98663583 | None:intergenic | 40.0% |
| !! | TTGTTGGTGATGGAAGGTTT+AGG | - | chr6_1:98663565-98663584 | None:intergenic | 40.0% |
| !!! | ATGGTTTTGTTGGTGATGGA+AGG | - | chr6_1:98663571-98663590 | None:intergenic | 40.0% |
| !!! | GAAAGTGGTGATGGTTTTGT+TGG | - | chr6_1:98663581-98663600 | None:intergenic | 40.0% |
| TGAATACGTGAAAGTGGTGA+TGG | - | chr6_1:98663590-98663609 | None:intergenic | 40.0% | |
| GAAGGATGAATACGTGAAAG+TGG | - | chr6_1:98663596-98663615 | None:intergenic | 40.0% | |
| GTGGTTTGAGAAGGGAAATT+TGG | - | chr6_1:98663656-98663675 | None:intergenic | 40.0% | |
| ! | GAAGAAGTGTGGTTTGAGAA+GGG | - | chr6_1:98663664-98663683 | None:intergenic | 40.0% |
| GATGAAGATGATGAAGAGAG+TGG | - | chr6_1:98663686-98663705 | None:intergenic | 40.0% | |
| ATCACAAGTTCGAAGCTCTT+AGG | + | chr6_1:98663833-98663852 | Msa0901820:CDS | 40.0% | |
| TGAAAAACAAACCGTGGATC+TGG | - | chr6_1:98664004-98664023 | None:intergenic | 40.0% | |
| CTCTATGCTAATGTTAGCCA+TGG | + | chr6_1:98664178-98664197 | Msa0901820:intron | 40.0% | |
| CAGCTGTATAACATCACTAC+GGG | + | chr6_1:98664664-98664683 | Msa0901820:intron | 40.0% | |
| TTAGCGCAGAAACAAAAAGG+CGG | + | chr6_1:98665349-98665368 | Msa0901820:intron | 40.0% | |
| GGAGAGAGACTGCTTTAATA+TGG | - | chr6_1:98665381-98665400 | None:intergenic | 40.0% | |
| GAAGTTGGAGAGAAAGAAGT+TGG | - | chr6_1:98665448-98665467 | None:intergenic | 40.0% | |
| TGCATACTCATTCTCAACCA+TGG | + | chr6_1:98665530-98665549 | Msa0901820:intron | 40.0% | |
| GCATACTCATTCTCAACCAT+GGG | + | chr6_1:98665531-98665550 | Msa0901820:intron | 40.0% | |
| !!! | TTGGCTAGTTTTACAAGTGG+TGG | + | chr6_1:98665944-98665963 | Msa0901820:intron | 40.0% |
| GATGAGATTGAGCTGGATAA+GGG | - | chr6_1:98666119-98666138 | None:intergenic | 40.0% | |
| TGATGAGATTGAGCTGGATA+AGG | - | chr6_1:98666120-98666139 | None:intergenic | 40.0% | |
| ! | ACATGATGATGAGATTGAGC+TGG | - | chr6_1:98666126-98666145 | None:intergenic | 40.0% |
| CAAGCTTTGCACACTTTCAA+TGG | + | chr6_1:98666384-98666403 | Msa0901820:intron | 40.0% | |
| GGTTTATGTCCCTCAAATTC+TGG | + | chr6_1:98666769-98666788 | Msa0901820:intron | 40.0% | |
| CTTGTCTGTTTGACCAAATC+TGG | - | chr6_1:98667293-98667312 | None:intergenic | 40.0% | |
| CTATGCAATTCATGATCACG+AGG | - | chr6_1:98667654-98667673 | None:intergenic | 40.0% | |
| TTGCAAACACTCCTAGTAGA+TGG | + | chr6_1:98667834-98667853 | Msa0901820:CDS | 40.0% | |
| ACACTCCTAGTAGATGGAAA+AGG | + | chr6_1:98667840-98667859 | Msa0901820:CDS | 40.0% | |
| CACTCCTAGTAGATGGAAAA+GGG | + | chr6_1:98667841-98667860 | Msa0901820:CDS | 40.0% | |
| ! | AATGCCCTTTTCCATCTACT+AGG | - | chr6_1:98667848-98667867 | None:intergenic | 40.0% |
| ATAACAGTTCACGATCTCTC+TGG | + | chr6_1:98667914-98667933 | Msa0901820:CDS | 40.0% | |
| ! | AGAGTATCAAGATCAAACCC+CGG | + | chr6_1:98667995-98668014 | Msa0901820:CDS | 40.0% |
| TGGCTAATTCTTCGTCCAAA+CGG | + | chr6_1:98668022-98668041 | Msa0901820:CDS | 40.0% | |
| ! | TTAGAAGCATGGAGAGAAAG+AGG | + | chr6_1:98668079-98668098 | Msa0901820:CDS | 40.0% |
| AGAGAAAGAGGTCATGTAGA+TGG | + | chr6_1:98668091-98668110 | Msa0901820:CDS | 40.0% | |
| ! | GTGATGAGTTCTAGTGTTGA+AGG | + | chr6_1:98668271-98668290 | Msa0901820:CDS | 40.0% |
| ! | AGTTCTAGTGTTGAAGGTGA+AGG | + | chr6_1:98668277-98668296 | Msa0901820:CDS | 40.0% |
| !!! | GGTGATGGTTTTGTTGGTGA+TGG | - | chr6_1:98663575-98663594 | None:intergenic | 45.0% |
| ! | GGAAGAAGTGTGGTTTGAGA+AGG | - | chr6_1:98663665-98663684 | None:intergenic | 45.0% |
| TGAAGAGAGTGGAAGAAGTG+TGG | - | chr6_1:98663675-98663694 | None:intergenic | 45.0% | |
| CATACACAGACAAACGCAGA+GGG | - | chr6_1:98663787-98663806 | None:intergenic | 45.0% | |
| ! | TCTGTGTATGCTGGAAGCAT+GGG | + | chr6_1:98663797-98663816 | Msa0901820:CDS | 45.0% |
| !! | TCATAGTGGATGGCTTGTGT+TGG | + | chr6_1:98663910-98663929 | Msa0901820:CDS | 45.0% |
| !! | CATAGTGGATGGCTTGTGTT+GGG | + | chr6_1:98663911-98663930 | Msa0901820:CDS | 45.0% |
| TGAACCGGGAAAGAAGGATT+CGG | + | chr6_1:98663949-98663968 | Msa0901820:CDS | 45.0% | |
| AAAACCACCGGACTACATTC+CGG | - | chr6_1:98664040-98664059 | None:intergenic | 45.0% | |
| AACATCACTACGGGTGTGTT+TGG | + | chr6_1:98664673-98664692 | Msa0901820:intron | 45.0% | |
| ! | AAGCTTTGTACACGGTGAGA+TGG | + | chr6_1:98665174-98665193 | Msa0901820:intron | 45.0% |
| TGCGCTAACATGCGAAGAAA+GGG | - | chr6_1:98665337-98665356 | None:intergenic | 45.0% | |
| GAAATAGGGGAGAGAGAAGT+TGG | - | chr6_1:98665463-98665482 | None:intergenic | 45.0% | |
| !! | ACAAGTGGTGGACCACATTA+TGG | + | chr6_1:98665956-98665975 | Msa0901820:intron | 45.0% |
| TCATCATCATGTCTCTCTCG+TGG | + | chr6_1:98666134-98666153 | Msa0901820:intron | 45.0% | |
| CCAGATACTAGCACATGGTA+GGG | - | chr6_1:98667356-98667375 | None:intergenic | 45.0% | |
| ACCAGATACTAGCACATGGT+AGG | - | chr6_1:98667357-98667376 | None:intergenic | 45.0% | |
| TGCTACCAGATACTAGCACA+TGG | - | chr6_1:98667361-98667380 | None:intergenic | 45.0% | |
| !! | ACTCGGATATTGATTCCCTG+CGG | - | chr6_1:98667608-98667627 | None:intergenic | 45.0% |
| GACAAATGGTGTGACCATTG+AGG | - | chr6_1:98667957-98667976 | None:intergenic | 45.0% | |
| AGTGAGTAGCTGGAAACCAT+GGG | + | chr6_1:98668051-98668070 | Msa0901820:CDS | 45.0% | |
| AAGAGGTCATGTAGATGGCT+TGG | + | chr6_1:98668096-98668115 | Msa0901820:CDS | 45.0% | |
| AGAGGTCATGTAGATGGCTT+GGG | + | chr6_1:98668097-98668116 | Msa0901820:CDS | 45.0% | |
| TTGTGTTCAAGGTTACCACC+AGG | + | chr6_1:98668238-98668257 | Msa0901820:CDS | 45.0% | |
| TCAAGGTTACCACCAGGTAA+AGG | + | chr6_1:98668244-98668263 | Msa0901820:CDS | 45.0% | |
| CAAGGTTACCACCAGGTAAA+GGG | + | chr6_1:98668245-98668264 | Msa0901820:CDS | 45.0% | |
| ATCACAAACCCTTTACCTGG+TGG | - | chr6_1:98668256-98668275 | None:intergenic | 45.0% | |
| CTCATCACAAACCCTTTACC+TGG | - | chr6_1:98668259-98668278 | None:intergenic | 45.0% | |
| TGTGCACCAACTTGCACAAA+AGG | - | chr6_1:98668316-98668335 | None:intergenic | 45.0% | |
| !! | AAAAAAAAAATTAACAAAAT+AGG | + | chr6_1:98664961-98664980 | Msa0901820:intron | 5.0% |
| !! | AAAAAAAAATTAACAAAATA+GGG | + | chr6_1:98664962-98664981 | Msa0901820:intron | 5.0% |
| !! | ATAATTAATTAATAATAGTA+AGG | + | chr6_1:98665273-98665292 | Msa0901820:intron | 5.0% |
| !! | TAATTAATTAATAATAGTAA+GGG | + | chr6_1:98665274-98665293 | Msa0901820:intron | 5.0% |
| !!! | ACTTTTAATAAAATAATAAA+AGG | - | chr6_1:98665570-98665589 | None:intergenic | 5.0% |
| !!! | AATAAAATAATTTTTTTTGA+AGG | - | chr6_1:98665596-98665615 | None:intergenic | 5.0% |
| !!! | TATTTTTTTTTTATTTTACT+CGG | - | chr6_1:98667625-98667644 | None:intergenic | 5.0% |
| ACAGACAAACGCAGAGGGAT+AGG | - | chr6_1:98663782-98663801 | None:intergenic | 50.0% | |
| GCATACACAGACAAACGCAG+AGG | - | chr6_1:98663788-98663807 | None:intergenic | 50.0% | |
| CTGCGTTTGTCTGTGTATGC+TGG | + | chr6_1:98663788-98663807 | Msa0901820:CDS | 50.0% | |
| GTCTGTGTATGCTGGAAGCA+TGG | + | chr6_1:98663796-98663815 | Msa0901820:CDS | 50.0% | |
| AGGGTTTGAACCGGGAAAGA+AGG | + | chr6_1:98663943-98663962 | Msa0901820:CDS | 50.0% | |
| CTCGGGTTCATTTCGTGGTT+CGG | + | chr6_1:98663972-98663991 | Msa0901820:CDS | 50.0% | |
| TTCGGTCTGAACCAGATCCA+CGG | + | chr6_1:98663990-98664009 | Msa0901820:CDS | 50.0% | |
| AGGTGAACCGGAATGTAGTC+CGG | + | chr6_1:98664030-98664049 | Msa0901820:CDS | 50.0% | |
| CTTTGTACACGGTGAGATGG+TGG | + | chr6_1:98665177-98665196 | Msa0901820:intron | 50.0% | |
| GCTAACATGCGAAGAAAGGG+GGG | - | chr6_1:98665334-98665353 | None:intergenic | 50.0% | |
| CGCTAACATGCGAAGAAAGG+GGG | - | chr6_1:98665335-98665354 | None:intergenic | 50.0% | |
| GCGCTAACATGCGAAGAAAG+GGG | - | chr6_1:98665336-98665355 | None:intergenic | 50.0% | |
| CTGCGCTAACATGCGAAGAA+AGG | - | chr6_1:98665338-98665357 | None:intergenic | 50.0% | |
| CGCAGAAACAAAAAGGCGGT+GGG | + | chr6_1:98665353-98665372 | Msa0901820:intron | 50.0% | |
| !! | AGTGGTGGACCACATTATGG+TGG | + | chr6_1:98665959-98665978 | Msa0901820:intron | 50.0% |
| !! | GTGGTGGACCACATTATGGT+GGG | + | chr6_1:98665960-98665979 | Msa0901820:intron | 50.0% |
| CCCTACCATGTGCTAGTATC+TGG | + | chr6_1:98667353-98667372 | Msa0901820:intron | 50.0% | |
| TACCGTCACTATTTGACCGC+AGG | + | chr6_1:98667589-98667608 | Msa0901820:intron | 50.0% | |
| ACCGTCACTATTTGACCGCA+GGG | + | chr6_1:98667590-98667609 | Msa0901820:intron | 50.0% | |
| TCCCTGCGGTCAAATAGTGA+CGG | - | chr6_1:98667594-98667613 | None:intergenic | 50.0% | |
| CGTCACGGACGAGAAAGAAA+GGG | + | chr6_1:98667884-98667903 | Msa0901820:CDS | 50.0% | |
| ACGGACGAGAAAGAAAGGGT+TGG | + | chr6_1:98667888-98667907 | Msa0901820:CDS | 50.0% | |
| ! | TCACGATCTCTCTGGTTCAC+CGG | + | chr6_1:98667922-98667941 | Msa0901820:CDS | 50.0% |
| TTGATACTCTGTCTGAGCCC+GGG | - | chr6_1:98667985-98668004 | None:intergenic | 50.0% | |
| CTTGATACTCTGTCTGAGCC+CGG | - | chr6_1:98667986-98668005 | None:intergenic | 50.0% | |
| ACGAAGAATTAGCCATGCGC+CGG | - | chr6_1:98668017-98668036 | None:intergenic | 50.0% | |
| TGGTTTCCAGCTACTCACTG+AGG | - | chr6_1:98668050-98668069 | None:intergenic | 50.0% | |
| CAGTGAGTAGCTGGAAACCA+TGG | + | chr6_1:98668050-98668069 | Msa0901820:CDS | 50.0% | |
| GTGAGTAGCTGGAAACCATG+GGG | + | chr6_1:98668052-98668071 | Msa0901820:CDS | 50.0% | |
| CATGCTTCTAAACGTCCCCA+TGG | - | chr6_1:98668070-98668089 | None:intergenic | 50.0% | |
| CATGGGGACGTTTAGAAGCA+TGG | + | chr6_1:98668068-98668087 | Msa0901820:CDS | 50.0% | |
| GTCGAGGTGGAAACCATCAG+CGG | - | chr6_1:98663729-98663748 | None:intergenic | 55.0% | |
| TGTGAGACGCTGGAGTGCAT+TGG | - | chr6_1:98663753-98663772 | None:intergenic | 55.0% | |
| AATGCACTCCAGCGTCTCAC+AGG | + | chr6_1:98663752-98663771 | Msa0901820:CDS | 55.0% | |
| TAGGTTTGCCTGTGAGACGC+TGG | - | chr6_1:98663763-98663782 | None:intergenic | 55.0% | |
| ! | GGAAGCATGGGTCGAACTTG+TGG | + | chr6_1:98663809-98663828 | Msa0901820:CDS | 55.0% |
| CGAGCCGAATCCTTCTTTCC+CGG | - | chr6_1:98663956-98663975 | None:intergenic | 55.0% | |
| CGGGAAAGAAGGATTCGGCT+CGG | + | chr6_1:98663954-98663973 | Msa0901820:CDS | 55.0% | |
| GGGAAAGAAGGATTCGGCTC+GGG | + | chr6_1:98663955-98663974 | Msa0901820:CDS | 55.0% | |
| !! | TTCGGCTCGGGTTCATTTCG+TGG | + | chr6_1:98663967-98663986 | Msa0901820:CDS | 55.0% |
| TGAACCGGAATGTAGTCCGG+TGG | + | chr6_1:98664033-98664052 | Msa0901820:CDS | 55.0% | |
| GCGCAGAAACAAAAAGGCGG+TGG | + | chr6_1:98665352-98665371 | Msa0901820:intron | 55.0% | |
| GCGTCACGGACGAGAAAGAA+AGG | + | chr6_1:98667883-98667902 | Msa0901820:CDS | 55.0% | |
| ACCATTGAGGCTGCAGCAAC+CGG | - | chr6_1:98667944-98667963 | None:intergenic | 55.0% | |
| CACACCATTTGTCCCATCCC+CGG | + | chr6_1:98667964-98667983 | Msa0901820:CDS | 55.0% | |
| ACACCATTTGTCCCATCCCC+GGG | + | chr6_1:98667965-98667984 | Msa0901820:CDS | 55.0% | |
| TGATACTCTGTCTGAGCCCG+GGG | - | chr6_1:98667984-98668003 | None:intergenic | 55.0% | |
| GAAGAATTAGCCATGCGCCG+GGG | - | chr6_1:98668015-98668034 | None:intergenic | 55.0% | |
| CGAAGAATTAGCCATGCGCC+GGG | - | chr6_1:98668016-98668035 | None:intergenic | 55.0% | |
| TCAGCGGAGCTGGTGGTTTC+AGG | - | chr6_1:98663713-98663732 | None:intergenic | 60.0% | |
| GAAACCACCAGCTCCGCTGA+TGG | + | chr6_1:98663713-98663732 | Msa0901820:CDS | 60.0% | |
| GAAACCATCAGCGGAGCTGG+TGG | - | chr6_1:98663720-98663739 | None:intergenic | 60.0% | |
| GTGGAAACCATCAGCGGAGC+TGG | - | chr6_1:98663723-98663742 | None:intergenic | 60.0% | |
| GGAGTGCATTGGAGTCGAGG+TGG | - | chr6_1:98663742-98663761 | None:intergenic | 60.0% | |
| GCTGGAGTGCATTGGAGTCG+AGG | - | chr6_1:98663745-98663764 | None:intergenic | 60.0% | |
| ACCGGTTGCTGCAGCCTCAA+TGG | + | chr6_1:98667940-98667959 | Msa0901820:CDS | 60.0% | |
| CAAGATCAAACCCCGGCGCA+TGG | + | chr6_1:98668002-98668021 | Msa0901820:CDS | 60.0% | |
| !! | CTACTCACTGAGGCGCCGTT+TGG | - | chr6_1:98668040-98668059 | None:intergenic | 60.0% |
| GAGCCCGGGGATGGGACAAA+TGG | - | chr6_1:98667971-98667990 | None:intergenic | 65.0% | |
| CTCTGTCTGAGCCCGGGGAT+GGG | - | chr6_1:98667979-98667998 | None:intergenic | 65.0% | |
| ACTCTGTCTGAGCCCGGGGA+TGG | - | chr6_1:98667980-98667999 | None:intergenic | 65.0% | |
| ACGGCGCCTCAGTGAGTAGC+TGG | + | chr6_1:98668041-98668060 | Msa0901820:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 98663380 | 98668474 | 98663380 | ID=Msa0901820;Name=Msa0901820 |
| chr6_1 | mRNA | 98663380 | 98668474 | 98663380 | ID=Msa0901820-mRNA-1;Parent=Msa0901820;Name=Msa0901820-mRNA-1;_AED=0.01;_eAED=0.01;_QI=138|1|0.5|1|1|1|2|0|423 |
| chr6_1 | exon | 98663380 | 98664131 | 98663380 | ID=Msa0901820-mRNA-1:exon:17405;Parent=Msa0901820-mRNA-1 |
| chr6_1 | exon | 98667817 | 98668474 | 98667817 | ID=Msa0901820-mRNA-1:exon:17406;Parent=Msa0901820-mRNA-1 |
| chr6_1 | five_prime_UTR | 98663380 | 98663517 | 98663380 | ID=Msa0901820-mRNA-1:five_prime_utr;Parent=Msa0901820-mRNA-1 |
| chr6_1 | CDS | 98663518 | 98664131 | 98663518 | ID=Msa0901820-mRNA-1:cds;Parent=Msa0901820-mRNA-1 |
| chr6_1 | CDS | 98667817 | 98668474 | 98667817 | ID=Msa0901820-mRNA-1:cds;Parent=Msa0901820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
