Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966830 | XP_003620756.1 | 97.872 | 423 | 9 | 0 | 1 | 423 | 1 | 423 | 0.0 | 860 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032130 | Msa0966830 | 0.812204 | 4.768547e-51 | -8.615850e-47 |
| Msa0032390 | Msa0966830 | 0.807986 | 3.865523e-50 | -8.615850e-47 |
| Msa0708020 | Msa0966830 | 0.811418 | 7.069778e-51 | -8.615850e-47 |
| Msa0726520 | Msa0966830 | 0.800191 | 1.618056e-48 | -8.615850e-47 |
| Msa0735010 | Msa0966830 | 0.800670 | 1.292769e-48 | -8.615850e-47 |
| Msa0766860 | Msa0966830 | 0.838177 | 3.358405e-57 | -8.615850e-47 |
| Msa0771910 | Msa0966830 | 0.802477 | 5.507634e-49 | -8.615850e-47 |
| Msa0776940 | Msa0966830 | 0.800079 | 1.705073e-48 | -8.615850e-47 |
| Msa0147680 | Msa0966830 | 0.819009 | 1.454527e-52 | -8.615850e-47 |
| Msa0185690 | Msa0966830 | 0.820378 | 7.080594e-53 | -8.615850e-47 |
| Msa0195140 | Msa0966830 | -0.807496 | 4.912723e-50 | -8.615850e-47 |
| Msa0206370 | Msa0966830 | 0.811959 | 5.393133e-51 | -8.615850e-47 |
| Msa0371350 | Msa0966830 | -0.803017 | 4.261127e-49 | -8.615850e-47 |
| Msa0372100 | Msa0966830 | 0.805313 | 1.417543e-49 | -8.615850e-47 |
| Msa0432200 | Msa0966830 | 0.801615 | 8.281391e-49 | -8.615850e-47 |
| Msa0434090 | Msa0966830 | 0.802865 | 4.579997e-49 | -8.615850e-47 |
| Msa0240590 | Msa0966830 | -0.823669 | 1.223017e-53 | -8.615850e-47 |
| Msa0260980 | Msa0966830 | 0.801855 | 7.393621e-49 | -8.615850e-47 |
| Msa0279090 | Msa0966830 | -0.807410 | 5.124000e-50 | -8.615850e-47 |
| Msa0336430 | Msa0966830 | 0.817812 | 2.715686e-52 | -8.615850e-47 |
| Msa0336520 | Msa0966830 | 0.823084 | 1.675562e-53 | -8.615850e-47 |
| Msa0850600 | Msa0966830 | 0.806360 | 8.544960e-50 | -8.615850e-47 |
| Msa0901820 | Msa0966830 | 0.858393 | 8.493688e-63 | -8.615850e-47 |
| Msa0950470 | Msa0966830 | -0.800909 | 1.154969e-48 | -8.615850e-47 |
| Msa0950570 | Msa0966830 | -0.806956 | 6.394560e-50 | -8.615850e-47 |
| Msa0966830 | Msa0966920 | 0.880528 | 5.098211e-70 | -8.615850e-47 |
| Msa0966830 | Msa1001050 | 0.909993 | 3.077863e-82 | -8.615850e-47 |
| Msa0966830 | Msa1021560 | 0.811051 | 8.494914e-51 | -8.615850e-47 |
| Msa0966830 | Msa1032740 | 0.816811 | 4.562677e-52 | -8.615850e-47 |
| Msa0966830 | Msa1057620 | -0.811686 | 6.184602e-51 | -8.615850e-47 |
| Msa0966830 | Msa1078300 | 0.840132 | 1.045017e-57 | -8.615850e-47 |
| Msa0966830 | Msa1085560 | 0.800526 | 1.383014e-48 | -8.615850e-47 |
| Msa0966830 | Msa1088740 | -0.811048 | 8.508571e-51 | -8.615850e-47 |
| Msa0966830 | Msa1105540 | 0.811860 | 5.666788e-51 | -8.615850e-47 |
| Msa0966830 | Msa1105580 | 0.812231 | 4.704099e-51 | -8.615850e-47 |
| Msa0966830 | Msa1148930 | 0.827935 | 1.188722e-54 | -8.615850e-47 |
| Msa0966830 | Msa1190350 | -0.820610 | 6.262909e-53 | -8.615850e-47 |
| Msa0966830 | Msa1220720 | 0.836122 | 1.125631e-56 | -8.615850e-47 |
| Msa0966830 | Msa1243630 | -0.809996 | 1.435834e-50 | -8.615850e-47 |
| Msa0966830 | Msa1244220 | -0.808897 | 2.470635e-50 | -8.615850e-47 |
| Msa0966830 | Msa1265570 | 0.844587 | 6.895089e-59 | -8.615850e-47 |
| Msa0966830 | Msa1283980 | 0.817369 | 3.418238e-52 | -8.615850e-47 |
| Msa0966830 | Msa1328280 | 0.800742 | 1.249645e-48 | -8.615850e-47 |
| Msa0966830 | Msa1334670 | 0.841723 | 3.997044e-58 | -8.615850e-47 |
| Msa0966830 | Msa1362590 | 0.807280 | 5.459655e-50 | -8.615850e-47 |
| Msa0966830 | Msa1365230 | 0.845447 | 4.038755e-59 | -8.615850e-47 |
| Msa0966830 | Msa1398490 | 0.816794 | 4.601209e-52 | -8.615850e-47 |
| Msa0966830 | Msa1421540 | 0.834411 | 3.044468e-56 | -8.615850e-47 |
| Msa0966830 | Msa1434700 | 0.803743 | 3.013902e-49 | -8.615850e-47 |
| Msa0966830 | Msa1438510 | 0.847850 | 8.909229e-60 | -8.615850e-47 |
| Msa0966830 | Msa1447900 | 0.808370 | 3.201989e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966830 | MtrunA17_Chr6g0487371 | 97.872 | 423 | 9 | 0 | 1 | 423 | 1 | 423 | 0.0 | 860 |
| Msa0966830 | MtrunA17_Chr3g0140721 | 51.509 | 464 | 169 | 11 | 1 | 420 | 1 | 452 | 3.16e-144 | 418 |
| Msa0966830 | MtrunA17_Chr5g0393941 | 42.377 | 446 | 194 | 13 | 1 | 414 | 64 | 478 | 7.34e-95 | 293 |
| Msa0966830 | MtrunA17_Chr8g0389691 | 69.312 | 189 | 46 | 3 | 237 | 419 | 1 | 183 | 3.67e-86 | 260 |
| Msa0966830 | MtrunA17_Chr8g0337321 | 35.909 | 440 | 224 | 11 | 1 | 412 | 1 | 410 | 9.68e-72 | 231 |
| Msa0966830 | MtrunA17_Chr8g0389701 | 56.250 | 144 | 59 | 1 | 64 | 207 | 26 | 165 | 5.73e-50 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966830 | AT4G29310.1 | 65.589 | 433 | 128 | 9 | 1 | 422 | 1 | 423 | 0.0 | 551 |
| Msa0966830 | AT4G29310.2 | 64.350 | 331 | 102 | 7 | 1 | 322 | 1 | 324 | 4.63e-146 | 419 |
| Msa0966830 | AT1G10020.1 | 49.041 | 469 | 176 | 12 | 1 | 417 | 1 | 458 | 4.04e-132 | 388 |
| Msa0966830 | AT3G19680.1 | 43.293 | 492 | 203 | 10 | 1 | 420 | 1 | 488 | 9.36e-108 | 327 |
| Msa0966830 | AT1G50040.1 | 41.901 | 463 | 208 | 10 | 1 | 414 | 1 | 451 | 3.30e-93 | 288 |
| Msa0966830 | AT5G17640.1 | 37.907 | 430 | 228 | 9 | 1 | 404 | 1 | 417 | 9.67e-83 | 261 |
Find 112 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCGGAGCTGGTGGTTTC+AGG | 0.223787 | 6_3:-95560074 | None:intergenic |
| TGTTGGTGATGGAAGGTTTA+GGG | 0.274468 | 6_3:-95559925 | None:intergenic |
| ATCCACAATGAATGTGAAAA+AGG | 0.295332 | 6_3:+95563481 | Msa0966830:CDS |
| TTGTTGGTGATGGAAGGTTT+AGG | 0.311492 | 6_3:-95559926 | None:intergenic |
| GTGGTTTGAGAAGGGAAATT+TGG | 0.319386 | 6_3:-95560017 | None:intergenic |
| AAGACATGAAAGGTATGTTT+TGG | 0.333797 | 6_3:-95559828 | None:intergenic |
| ATCCATTGTTCTTTGTTGTT+TGG | 0.340336 | 6_3:-95559865 | None:intergenic |
| CTCGGGTTCATTTCGTGGTT+CGG | 0.344710 | 6_3:+95560336 | Msa0966830:CDS |
| TGCTGCTATTGATCTTAGTA+TGG | 0.353674 | 6_3:+95563694 | Msa0966830:CDS |
| AGTATTATGGATTGTGTTCA+AGG | 0.354254 | 6_3:+95563540 | Msa0966830:CDS |
| TTTCGTGGTTCGGTCTGAAC+CGG | 0.364301 | 6_3:+95560346 | Msa0966830:CDS |
| TTGCAAACACTCCTAGTAGA+TGG | 0.381223 | 6_3:+95563147 | Msa0966830:CDS |
| CTTGATACTCTGTCTGAGCC+TGG | 0.383955 | 6_3:-95563296 | None:intergenic |
| CATTATAATCAATGCAGAAT+TGG | 0.384100 | 6_3:-95563508 | None:intergenic |
| AATGTTATGAAAGAGTATTA+TGG | 0.388839 | 6_3:+95563527 | Msa0966830:CDS |
| TTCATTGTGGATTCAGCTAT+AGG | 0.393565 | 6_3:-95563470 | None:intergenic |
| CTACTCACTGAGGCGCCGTT+TGG | 0.396234 | 6_3:-95563350 | None:intergenic |
| TTGGTTTATGTAATAAGATT+TGG | 0.398565 | 6_3:-95559809 | None:intergenic |
| TCATAGTGGATGGCTTGTGC+TGG | 0.409638 | 6_3:+95560274 | Msa0966830:CDS |
| CAAGGTTACCACCAGGTAAA+GGG | 0.410973 | 6_3:+95563558 | Msa0966830:CDS |
| TTAGAAGCATGGAGAGAAAA+AGG | 0.415511 | 6_3:+95563392 | Msa0966830:CDS |
| CATGGTATTGTTGTTGTTGA+AGG | 0.422188 | 6_3:-95559975 | None:intergenic |
| TGTGCACCAACTTGCACAAA+AGG | 0.427169 | 6_3:-95563626 | None:intergenic |
| CGAGCCGAATCCTTCTTTCC+CGG | 0.431922 | 6_3:-95560317 | None:intergenic |
| GTCTGTGTATGCTGGAAGCA+TGG | 0.433665 | 6_3:+95560160 | Msa0966830:CDS |
| ACCATTGAGGCTGCAGCAAC+CGG | 0.435726 | 6_3:-95563254 | None:intergenic |
| CTGCGTTTGTCTGTGTATGC+TGG | 0.445120 | 6_3:+95560152 | Msa0966830:CDS |
| TTGATACTCTGTCTGAGCCT+GGG | 0.454550 | 6_3:-95563295 | None:intergenic |
| GTGGAAACCATCAGCGGAGC+TGG | 0.455014 | 6_3:-95560084 | None:intergenic |
| TTCGGCTCGGGTTCATTTCG+TGG | 0.456979 | 6_3:+95560331 | Msa0966830:CDS |
| AAAAGGTCATGTAGATGGCT+TGG | 0.462494 | 6_3:+95563409 | Msa0966830:CDS |
| ACACTCCTAGTAGATGGAAA+AGG | 0.466520 | 6_3:+95563153 | Msa0966830:CDS |
| AAAGGTCATGTAGATGGCTT+GGG | 0.469154 | 6_3:+95563410 | Msa0966830:CDS |
| CTCTGTCTGAGCCTGGGGAT+GGG | 0.470636 | 6_3:-95563289 | None:intergenic |
| AAAGAAGAAAGGGTTTGAAC+CGG | 0.474100 | 6_3:+95560298 | Msa0966830:CDS |
| CAGTTATGTTTCATAGTGGA+TGG | 0.475543 | 6_3:+95560264 | Msa0966830:CDS |
| TCAAGGTTACCACCAGGTAA+AGG | 0.476377 | 6_3:+95563557 | Msa0966830:CDS |
| AGGGTTTGAACCGGGAAAGA+AGG | 0.477281 | 6_3:+95560307 | Msa0966830:CDS |
| ACTCTGTCTGAGCCTGGGGA+TGG | 0.484572 | 6_3:-95563290 | None:intergenic |
| ACGGCGCCTCAGTGAGTAGC+TGG | 0.485041 | 6_3:+95563354 | Msa0966830:CDS |
| ACACCATTTGTCCCATCCCC+AGG | 0.485141 | 6_3:+95563278 | Msa0966830:CDS |
| CACTCCTAGTAGATGGAAAA+GGG | 0.485668 | 6_3:+95563154 | Msa0966830:CDS |
| GTGATGAGTTCTAGTGTTGA+AGG | 0.486355 | 6_3:+95563584 | Msa0966830:CDS |
| ACCGGTTGCTGCAGCCTCAA+TGG | 0.487378 | 6_3:+95563253 | Msa0966830:CDS |
| GAGCCTGGGGATGGGACAAA+TGG | 0.491736 | 6_3:-95563281 | None:intergenic |
| TCAACTGTTAGACGTACAAA+TGG | 0.494581 | 6_3:-95559894 | None:intergenic |
| AATAAGATTTGGTGTTGAAA+AGG | 0.496701 | 6_3:-95559798 | None:intergenic |
| GGAAGAAGTGTGGTTTGAGA+AGG | 0.497031 | 6_3:-95560026 | None:intergenic |
| CGAAGAATTAGCCATGCGCC+GGG | 0.497196 | 6_3:-95563326 | None:intergenic |
| GCGTCACGGACGAGAAAGAA+AGG | 0.497933 | 6_3:+95563196 | Msa0966830:CDS |
| ATAACAGTTCACGATCTCTC+TGG | 0.506176 | 6_3:+95563227 | Msa0966830:CDS |
| TGAACCGGGAAAGAAGGATT+CGG | 0.506902 | 6_3:+95560313 | Msa0966830:CDS |
| GTAGTTTAAGAAAGAGGGTG+TGG | 0.512771 | 6_3:-95559761 | None:intergenic |
| ACAGACAAACGCAGAGGGAT+AGG | 0.513376 | 6_3:-95560143 | None:intergenic |
| TCACGATCTCTCTGGTTCAC+CGG | 0.513554 | 6_3:+95563235 | Msa0966830:CDS |
| AGGGAAATTTGGTATATGAA+TGG | 0.516982 | 6_3:-95560006 | None:intergenic |
| GTTTCGTAGTTTAAGAAAGA+GGG | 0.522168 | 6_3:-95559766 | None:intergenic |
| CTTGTGCTGGGAAAGAAGAA+AGG | 0.522313 | 6_3:+95560287 | Msa0966830:CDS |
| AAAACCACCGGACTACATTC+CGG | 0.522926 | 6_3:-95560401 | None:intergenic |
| AGTTTCGTAGTTTAAGAAAG+AGG | 0.522978 | 6_3:-95559767 | None:intergenic |
| TCAAGAGAATATTAGACAGC+CGG | 0.523927 | 6_3:+95560430 | Msa0966830:CDS |
| GAAGAAGTGTGGTTTGAGAA+GGG | 0.529695 | 6_3:-95560025 | None:intergenic |
| GGGAAAGAAGGATTCGGCTC+GGG | 0.533415 | 6_3:+95560319 | Msa0966830:CDS |
| AATGCACTCCAGCGTCTCAC+AGG | 0.544235 | 6_3:+95560116 | Msa0966830:CDS |
| CGTTCAGTTATGTTTCATAG+TGG | 0.545140 | 6_3:+95560260 | Msa0966830:CDS |
| GATGAAGATGATGAAGAGAG+TGG | 0.546238 | 6_3:-95560047 | None:intergenic |
| TGGCTAATTCTTCGTCCAAA+CGG | 0.547768 | 6_3:+95563335 | Msa0966830:CDS |
| CAGTGAGTAGCTGGAAACCA+TGG | 0.547889 | 6_3:+95563363 | Msa0966830:CDS |
| CTGATCGAAATTCTAGATCA+AGG | 0.551265 | 6_3:+95560474 | Msa0966830:CDS |
| CATAGTGGATGGCTTGTGCT+GGG | 0.552598 | 6_3:+95560275 | Msa0966830:CDS |
| AGGTGAACCGGAATGTAGTC+CGG | 0.552686 | 6_3:+95560394 | Msa0966830:CDS |
| AGTGAGTAGCTGGAAACCAT+GGG | 0.554092 | 6_3:+95563364 | Msa0966830:CDS |
| TTCGGTCTGAACCGGATCCA+CGG | 0.555103 | 6_3:+95560354 | Msa0966830:CDS |
| CAAGATCAAACCCCGGCGCA+TGG | 0.560299 | 6_3:+95563315 | Msa0966830:CDS |
| TAGGTTTGCCTGTGAGACGC+TGG | 0.562906 | 6_3:-95560124 | None:intergenic |
| TGCACAACATGTTACATGTA+TGG | 0.563106 | 6_3:+95563643 | Msa0966830:CDS |
| TTGTGCTGGGAAAGAAGAAA+GGG | 0.565368 | 6_3:+95560288 | Msa0966830:CDS |
| ACGAAGAATTAGCCATGCGC+CGG | 0.565487 | 6_3:-95563327 | None:intergenic |
| CTCATCACAAACCCTTTACC+TGG | 0.570924 | 6_3:-95563569 | None:intergenic |
| GAAACCACCAGCTCCGCTGA+TGG | 0.570979 | 6_3:+95560077 | Msa0966830:CDS |
| CATGGGGACGTTTAGAAGCA+TGG | 0.571889 | 6_3:+95563381 | Msa0966830:CDS |
| TGTGAGACGCTGGAGTGCAT+TGG | 0.575230 | 6_3:-95560114 | None:intergenic |
| AAGAAGAAAGGGTTTGAACC+GGG | 0.580697 | 6_3:+95560299 | Msa0966830:CDS |
| TGATACTCTGTCTGAGCCTG+GGG | 0.584192 | 6_3:-95563294 | None:intergenic |
| GCTGGAGTGCATTGGAGTCG+AGG | 0.584687 | 6_3:-95560106 | None:intergenic |
| GAACTCGTAACCGAAAATAA+CGG | 0.585112 | 6_3:+95563443 | Msa0966830:CDS |
| GGAAGCATGGGTCGAACTTG+CGG | 0.588429 | 6_3:+95560173 | Msa0966830:CDS |
| AGTTCTAGTGTTGAAGGTGA+AGG | 0.591958 | 6_3:+95563590 | Msa0966830:CDS |
| TCTGTGTATGCTGGAAGCAT+GGG | 0.592421 | 6_3:+95560161 | Msa0966830:CDS |
| AACCAAACAACAAAGAACAA+TGG | 0.593579 | 6_3:+95559863 | Msa0966830:exon |
| TGAAGAGAGTGGAAGAAGTG+TGG | 0.595218 | 6_3:-95560036 | None:intergenic |
| CGGGAAAGAAGGATTCGGCT+CGG | 0.598341 | 6_3:+95560318 | Msa0966830:CDS |
| GAAGGATGAATACGTGAAAG+TGG | 0.601146 | 6_3:-95559957 | None:intergenic |
| ACGGACGAGAAAGAAAGGGT+TGG | 0.607719 | 6_3:+95563201 | Msa0966830:CDS |
| GAAACCATCAGCGGAGCTGG+TGG | 0.618402 | 6_3:-95560081 | None:intergenic |
| CAATTGTTTGAAGACATGAA+AGG | 0.628073 | 6_3:-95559838 | None:intergenic |
| CGTCACGGACGAGAAAGAAA+GGG | 0.630621 | 6_3:+95563197 | Msa0966830:CDS |
| CATGCTTCTAAACGTCCCCA+TGG | 0.635204 | 6_3:-95563380 | None:intergenic |
| TGAATACGTGAAAGTGGTGA+TGG | 0.640926 | 6_3:-95559951 | None:intergenic |
| TTGTGTTCAAGGTTACCACC+AGG | 0.654136 | 6_3:+95563551 | Msa0966830:CDS |
| CATACACAGACAAACGCAGA+GGG | 0.668520 | 6_3:-95560148 | None:intergenic |
| AAAAGTGTTCAAGAGCGTCA+CGG | 0.669596 | 6_3:+95563182 | Msa0966830:CDS |
| GGAGTGCATTGGAGTCGAGG+TGG | 0.675035 | 6_3:-95560103 | None:intergenic |
| ATCACAAACCCTTTACCTGG+TGG | 0.684939 | 6_3:-95563566 | None:intergenic |
| TGAACCGGAATGTAGTCCGG+TGG | 0.695792 | 6_3:+95560397 | Msa0966830:CDS |
| GACAAATGGTGTGACCATTG+AGG | 0.703421 | 6_3:-95563267 | None:intergenic |
| GTCGAGGTGGAAACCATCAG+CGG | 0.705214 | 6_3:-95560090 | None:intergenic |
| AGAGTATCAAGATCAAACCC+CGG | 0.719340 | 6_3:+95563308 | Msa0966830:CDS |
| GAAGAATTAGCCATGCGCCG+GGG | 0.725892 | 6_3:-95563325 | None:intergenic |
| GCATACACAGACAAACGCAG+AGG | 0.737316 | 6_3:-95560149 | None:intergenic |
| GTGAGTAGCTGGAAACCATG+GGG | 0.739154 | 6_3:+95563365 | Msa0966830:CDS |
| TGGTTTCCAGCTACTCACTG+AGG | 0.744962 | 6_3:-95563360 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAATAAAATAATAAA+AGG | - | chr6_3:95560980-95560999 | None:intergenic | 0.0% |
| !! | AAAGTTATCATATTATTAAA+AGG | + | chr6_3:95560846-95560865 | Msa0966830:intron | 10.0% |
| !!! | ATAACATAATATTTTTTTGA+AGG | - | chr6_3:95561006-95561025 | None:intergenic | 10.0% |
| !! | TTAATTAACAAAGATAATTA+TGG | + | chr6_3:95561226-95561245 | Msa0966830:intron | 10.0% |
| !!! | AAAAATACTTAGTTTAAAAT+TGG | - | chr6_3:95562390-95562409 | None:intergenic | 10.0% |
| !! | TTAAATTTATAAATCTACCA+TGG | - | chr6_3:95560562-95560581 | None:intergenic | 15.0% |
| !! | ATCATATTATTAAAAGGAAA+AGG | + | chr6_3:95560852-95560871 | Msa0966830:intron | 15.0% |
| !!! | ACGATTTTAAATATTTTGAT+TGG | - | chr6_3:95561830-95561849 | None:intergenic | 15.0% |
| !!! | ATTAGTGTTATTAATTTATG+TGG | + | chr6_3:95561857-95561876 | Msa0966830:intron | 15.0% |
| !! | ATTAAAAAGAGTTTAATGAT+GGG | - | chr6_3:95561929-95561948 | None:intergenic | 15.0% |
| !! | TATTAAAAAGAGTTTAATGA+TGG | - | chr6_3:95561930-95561949 | None:intergenic | 15.0% |
| !! | TATCTCTATTAAACATATTT+AGG | + | chr6_3:95562061-95562080 | Msa0966830:intron | 15.0% |
| !! | AAACATAATAATTTAGTAGT+TGG | - | chr6_3:95562546-95562565 | None:intergenic | 15.0% |
| !!! | ATCAATTTTTTTTATCTTTC+AGG | + | chr6_3:95563108-95563127 | Msa0966830:intron | 15.0% |
| !! | TTGGTTTATGTAATAAGATT+TGG | - | chr6_3:95559812-95559831 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTGTGTTCACAT+TGG | + | chr6_3:95560595-95560614 | Msa0966830:intron | 20.0% |
| !!! | TCTTTAAAAATCAAACGATT+TGG | + | chr6_3:95560623-95560642 | Msa0966830:intron | 20.0% |
| !! | CACTATCAGAAAAAATTAAA+TGG | + | chr6_3:95560823-95560842 | Msa0966830:intron | 20.0% |
| !!! | TTTTATGTTGGTTGAAAAAA+TGG | + | chr6_3:95560882-95560901 | Msa0966830:intron | 20.0% |
| !! | ATTAACAAAGATAATTATGG+TGG | + | chr6_3:95561229-95561248 | Msa0966830:intron | 20.0% |
| !!! | AATTATGACTTTGATGATTA+AGG | + | chr6_3:95561668-95561687 | Msa0966830:intron | 20.0% |
| !! | AATTGTACCATATCATATTA+TGG | + | chr6_3:95561755-95561774 | Msa0966830:intron | 20.0% |
| !!! | TTAAATATTTTGATTGGTTG+TGG | - | chr6_3:95561824-95561843 | None:intergenic | 20.0% |
| !! | AAAAAAAAACCAGAATTTGA+GGG | - | chr6_3:95562094-95562113 | None:intergenic | 20.0% |
| !! | AAAAAAAAAACCAGAATTTG+AGG | - | chr6_3:95562095-95562114 | None:intergenic | 20.0% |
| !! | CACATTTATGATATGTTATA+TGG | - | chr6_3:95562239-95562258 | None:intergenic | 20.0% |
| !!! | CTAATTTAAAGTAAAATCCA+TGG | + | chr6_3:95562300-95562319 | Msa0966830:intron | 20.0% |
| !! | TATAAACCAATGACAAAAAT+CGG | + | chr6_3:95562861-95562880 | Msa0966830:intron | 20.0% |
| !!! | AATGTTATGAAAGAGTATTA+TGG | + | chr6_3:95563527-95563546 | Msa0966830:CDS | 20.0% |
| !!! | AATAAGATTTGGTGTTGAAA+AGG | - | chr6_3:95559801-95559820 | None:intergenic | 25.0% |
| ! | CTAAATTTGCAACTAAAAAC+CGG | - | chr6_3:95560452-95560471 | None:intergenic | 25.0% |
| !!! | ATCGTTTGATTTTTAAAGAG+TGG | - | chr6_3:95560622-95560641 | None:intergenic | 25.0% |
| !!! | ATCAAACGATTTGGTTAAAT+CGG | + | chr6_3:95560632-95560651 | Msa0966830:intron | 25.0% |
| ! | CTTTCTATGGTTTAGTTATT+TGG | + | chr6_3:95560673-95560692 | Msa0966830:intron | 25.0% |
| !!! | CAATAGTCACTTTTAACTAT+TGG | - | chr6_3:95560719-95560738 | None:intergenic | 25.0% |
| !! | AAAGGAAAATGCTTTTATGT+TGG | + | chr6_3:95560870-95560889 | Msa0966830:intron | 25.0% |
| ! | TGATATCTTCAATAGTTCTT+TGG | - | chr6_3:95561171-95561190 | None:intergenic | 25.0% |
| !! | GTGGGTTAATTAATTAACTA+TGG | + | chr6_3:95561291-95561310 | Msa0966830:intron | 25.0% |
| ! | AACTATGGTTGTAAACTAAA+TGG | + | chr6_3:95561306-95561325 | Msa0966830:intron | 25.0% |
| ! | GATTAAATGACATATATGGT+AGG | - | chr6_3:95561383-95561402 | None:intergenic | 25.0% |
| !! | ACCATATATGTCATTTAATC+AGG | + | chr6_3:95561383-95561402 | Msa0966830:intron | 25.0% |
| ! | ACCTGATTAAATGACATATA+TGG | - | chr6_3:95561387-95561406 | None:intergenic | 25.0% |
| ! | CAAATGAAATGAGTACAAAA+TGG | - | chr6_3:95561485-95561504 | None:intergenic | 25.0% |
| !! | CATTTTGTACTCATTTCATT+TGG | + | chr6_3:95561483-95561502 | Msa0966830:intron | 25.0% |
| ! | TAATACAAAACTTGTGGATA+GGG | - | chr6_3:95561622-95561641 | None:intergenic | 25.0% |
| ! | ATCATCAAAGTCATAATTGA+GGG | - | chr6_3:95561666-95561685 | None:intergenic | 25.0% |
| ! | AATCATCAAAGTCATAATTG+AGG | - | chr6_3:95561667-95561686 | None:intergenic | 25.0% |
| ! | GTTTACACCATAATATGATA+TGG | - | chr6_3:95561765-95561784 | None:intergenic | 25.0% |
| !! | CTGTTTATTTAAGGTTGAAA+AGG | - | chr6_3:95562272-95562291 | None:intergenic | 25.0% |
| ! | GAGAAGTTTCTGTTTATTTA+AGG | - | chr6_3:95562281-95562300 | None:intergenic | 25.0% |
| !! | TTTTTCCCACTTATTCTTTA+AGG | + | chr6_3:95562405-95562424 | Msa0966830:intron | 25.0% |
| !!! | ATTTTTTCACAAGGACATAA+AGG | - | chr6_3:95562438-95562457 | None:intergenic | 25.0% |
| !! | TTTGACACAACTAATTTTGT+AGG | + | chr6_3:95562817-95562836 | Msa0966830:intron | 25.0% |
| !!! | TTTTTATCTTTCAGGTCTAA+TGG | + | chr6_3:95563116-95563135 | Msa0966830:intron | 25.0% |
| !!! | TATAGGTATTCCGTTATTTT+CGG | - | chr6_3:95563456-95563475 | None:intergenic | 25.0% |
| ! | CATTATAATCAATGCAGAAT+TGG | - | chr6_3:95563511-95563530 | None:intergenic | 25.0% |
| GTTTCGTAGTTTAAGAAAGA+GGG | - | chr6_3:95559769-95559788 | None:intergenic | 30.0% | |
| AGTTTCGTAGTTTAAGAAAG+AGG | - | chr6_3:95559770-95559789 | None:intergenic | 30.0% | |
| !! | AAGACATGAAAGGTATGTTT+TGG | - | chr6_3:95559831-95559850 | None:intergenic | 30.0% |
| CAATTGTTTGAAGACATGAA+AGG | - | chr6_3:95559841-95559860 | None:intergenic | 30.0% | |
| AACCAAACAACAAAGAACAA+TGG | + | chr6_3:95559863-95559882 | Msa0966830:exon | 30.0% | |
| !! | ATCCATTGTTCTTTGTTGTT+TGG | - | chr6_3:95559868-95559887 | None:intergenic | 30.0% |
| ATATGAATGGTGCAAAAACA+TGG | - | chr6_3:95559996-95560015 | None:intergenic | 30.0% | |
| AGGGAAATTTGGTATATGAA+TGG | - | chr6_3:95560009-95560028 | None:intergenic | 30.0% | |
| CTATGAACTAAAGCTTTCTA+TGG | + | chr6_3:95560660-95560679 | Msa0966830:intron | 30.0% | |
| TTAATTAACCCACCATAATG+TGG | - | chr6_3:95561284-95561303 | None:intergenic | 30.0% | |
| TGGTGTATAGTTTAAGCTTA+TGG | + | chr6_3:95561326-95561345 | Msa0966830:intron | 30.0% | |
| GGTGTATAGTTTAAGCTTAT+GGG | + | chr6_3:95561327-95561346 | Msa0966830:intron | 30.0% | |
| CTTTGCTTGTCAATATCTTT+AGG | + | chr6_3:95561350-95561369 | Msa0966830:intron | 30.0% | |
| ! | GTGTCAAGTAAACATGTTTT+TGG | - | chr6_3:95561565-95561584 | None:intergenic | 30.0% |
| CTAATACAAAACTTGTGGAT+AGG | - | chr6_3:95561623-95561642 | None:intergenic | 30.0% | |
| !! | CTATCCACAAGTTTTGTATT+AGG | + | chr6_3:95561621-95561640 | Msa0966830:intron | 30.0% |
| !!! | GCAATTCAGAATGTTTTGAT+TGG | + | chr6_3:95561879-95561898 | Msa0966830:intron | 30.0% |
| ! | TTACGTGTGCAAAGTTATTT+TGG | + | chr6_3:95561902-95561921 | Msa0966830:intron | 30.0% |
| TTAATCTTAAAGAGTCTCTG+AGG | - | chr6_3:95561975-95561994 | None:intergenic | 30.0% | |
| GAGTACCTTAAAGAATAAGT+GGG | - | chr6_3:95562413-95562432 | None:intergenic | 30.0% | |
| TGAGTACCTTAAAGAATAAG+TGG | - | chr6_3:95562414-95562433 | None:intergenic | 30.0% | |
| !!! | AAAGGGGAAATTTTTTCACA+AGG | - | chr6_3:95562447-95562466 | None:intergenic | 30.0% |
| !! | AGTGGACTTTAATTTGAAAG+GGG | - | chr6_3:95562463-95562482 | None:intergenic | 30.0% |
| !! | GAGTGGACTTTAATTTGAAA+GGG | - | chr6_3:95562464-95562483 | None:intergenic | 30.0% |
| !! | TGAGTGGACTTTAATTTGAA+AGG | - | chr6_3:95562465-95562484 | None:intergenic | 30.0% |
| AAGTCCACTCATTTAAAAAC+AGG | + | chr6_3:95562474-95562493 | Msa0966830:intron | 30.0% | |
| !!! | TGAACCTGTTTTTAAATGAG+TGG | - | chr6_3:95562481-95562500 | None:intergenic | 30.0% |
| GTTGCATATATAACCAGATT+TGG | + | chr6_3:95562588-95562607 | Msa0966830:intron | 30.0% | |
| GACAGTTATGTATCATAGTT+TGG | - | chr6_3:95562637-95562656 | None:intergenic | 30.0% | |
| ACTATGATACATAACTGTCA+TGG | + | chr6_3:95562638-95562657 | Msa0966830:intron | 30.0% | |
| AGAGACATATGAAAATCGAA+CGG | - | chr6_3:95563083-95563102 | None:intergenic | 30.0% | |
| ATCCACAATGAATGTGAAAA+AGG | + | chr6_3:95563481-95563500 | Msa0966830:CDS | 30.0% | |
| TCCACAATGAATGTGAAAAA+GGG | + | chr6_3:95563482-95563501 | Msa0966830:CDS | 30.0% | |
| ! | AGTATTATGGATTGTGTTCA+AGG | + | chr6_3:95563540-95563559 | Msa0966830:CDS | 30.0% |
| ! | AGCTTTTCTCTCATAAACTT+AGG | + | chr6_3:95563726-95563745 | Msa0966830:CDS | 30.0% |
| TCAACTGTTAGACGTACAAA+TGG | - | chr6_3:95559897-95559916 | None:intergenic | 35.0% | |
| ! | CATGGTATTGTTGTTGTTGA+AGG | - | chr6_3:95559978-95559997 | None:intergenic | 35.0% |
| ! | ATAGCAAGTTCGAAGCTTTT+AGG | + | chr6_3:95560197-95560216 | Msa0966830:CDS | 35.0% |
| CGTTCAGTTATGTTTCATAG+TGG | + | chr6_3:95560260-95560279 | Msa0966830:CDS | 35.0% | |
| ! | CAGTTATGTTTCATAGTGGA+TGG | + | chr6_3:95560264-95560283 | Msa0966830:CDS | 35.0% |
| AAAGAAGAAAGGGTTTGAAC+CGG | + | chr6_3:95560298-95560317 | Msa0966830:CDS | 35.0% | |
| CCAAATTGAAAAACAAACCG+TGG | - | chr6_3:95560374-95560393 | None:intergenic | 35.0% | |
| !! | CCACGGTTTGTTTTTCAATT+TGG | + | chr6_3:95560371-95560390 | Msa0966830:CDS | 35.0% |
| !! | CGGTTTGTTTTTCAATTTGG+AGG | + | chr6_3:95560374-95560393 | Msa0966830:CDS | 35.0% |
| ! | TTTTCAATTTGGAGGTGAAC+CGG | + | chr6_3:95560382-95560401 | Msa0966830:CDS | 35.0% |
| TCTTGAATCTGAAAAACCAC+CGG | - | chr6_3:95560416-95560435 | None:intergenic | 35.0% | |
| TCAAGAGAATATTAGACAGC+CGG | + | chr6_3:95560430-95560449 | Msa0966830:CDS | 35.0% | |
| CTGATCGAAATTCTAGATCA+AGG | + | chr6_3:95560474-95560493 | Msa0966830:CDS | 35.0% | |
| ATTCTAGATCAAGGTGAGTT+TGG | + | chr6_3:95560483-95560502 | Msa0966830:intron | 35.0% | |
| !! | GATAATTATGGTGGACCATT+TGG | + | chr6_3:95561238-95561257 | Msa0966830:intron | 35.0% |
| CACTTGTAAAACTAGCCAAA+TGG | - | chr6_3:95561256-95561275 | None:intergenic | 35.0% | |
| !!! | CATTTGGCTAGTTTTACAAG+TGG | + | chr6_3:95561254-95561273 | Msa0966830:intron | 35.0% |
| CTTGTCAATATCTTTAGGCT+AGG | + | chr6_3:95561355-95561374 | Msa0966830:intron | 35.0% | |
| AATGAGATTGAGCTGGATAA+GGG | - | chr6_3:95561432-95561451 | None:intergenic | 35.0% | |
| TAATGAGATTGAGCTGGATA+AGG | - | chr6_3:95561433-95561452 | None:intergenic | 35.0% | |
| ! | ACATGATAATGAGATTGAGC+TGG | - | chr6_3:95561439-95561458 | None:intergenic | 35.0% |
| ACAGCCTAATACAAAACTTG+TGG | - | chr6_3:95561628-95561647 | None:intergenic | 35.0% | |
| ATTAAGACAGACTCAAGACT+CGG | + | chr6_3:95561990-95562009 | Msa0966830:intron | 35.0% | |
| TTCTAACTCAGCAAAAACCA+TGG | - | chr6_3:95562320-95562339 | None:intergenic | 35.0% | |
| ! | GCACGTTTGACATTTTCATT+AGG | + | chr6_3:95562725-95562744 | Msa0966830:intron | 35.0% |
| ! | AGTCATCCGATTTTTGTCAT+TGG | - | chr6_3:95562870-95562889 | None:intergenic | 35.0% |
| ! | TTAGAAGCATGGAGAGAAAA+AGG | + | chr6_3:95563392-95563411 | Msa0966830:CDS | 35.0% |
| AGAGAAAAAGGTCATGTAGA+TGG | + | chr6_3:95563404-95563423 | Msa0966830:CDS | 35.0% | |
| GAACTCGTAACCGAAAATAA+CGG | + | chr6_3:95563443-95563462 | Msa0966830:CDS | 35.0% | |
| TTCATTGTGGATTCAGCTAT+AGG | - | chr6_3:95563473-95563492 | None:intergenic | 35.0% | |
| !! | ACCCTTTTTCACATTCATTG+TGG | - | chr6_3:95563486-95563505 | None:intergenic | 35.0% |
| ACAATGAATGTGAAAAAGGG+TGG | + | chr6_3:95563485-95563504 | Msa0966830:CDS | 35.0% | |
| ! | AGTAAACCTTTTGTGCAAGT+TGG | + | chr6_3:95563620-95563639 | Msa0966830:CDS | 35.0% |
| TGCACAACATGTTACATGTA+TGG | + | chr6_3:95563643-95563662 | Msa0966830:CDS | 35.0% | |
| TGCTGCTATTGATCTTAGTA+TGG | + | chr6_3:95563694-95563713 | Msa0966830:CDS | 35.0% | |
| GTAGTTTAAGAAAGAGGGTG+TGG | - | chr6_3:95559764-95559783 | None:intergenic | 40.0% | |
| !! | TGTTGGTGATGGAAGGTTTA+GGG | - | chr6_3:95559928-95559947 | None:intergenic | 40.0% |
| !! | TTGTTGGTGATGGAAGGTTT+AGG | - | chr6_3:95559929-95559948 | None:intergenic | 40.0% |
| !!! | ATGGTTTTGTTGGTGATGGA+AGG | - | chr6_3:95559935-95559954 | None:intergenic | 40.0% |
| !!! | GAAAGTGGTGATGGTTTTGT+TGG | - | chr6_3:95559945-95559964 | None:intergenic | 40.0% |
| TGAATACGTGAAAGTGGTGA+TGG | - | chr6_3:95559954-95559973 | None:intergenic | 40.0% | |
| GAAGGATGAATACGTGAAAG+TGG | - | chr6_3:95559960-95559979 | None:intergenic | 40.0% | |
| GTGGTTTGAGAAGGGAAATT+TGG | - | chr6_3:95560020-95560039 | None:intergenic | 40.0% | |
| ! | GAAGAAGTGTGGTTTGAGAA+GGG | - | chr6_3:95560028-95560047 | None:intergenic | 40.0% |
| GATGAAGATGATGAAGAGAG+TGG | - | chr6_3:95560050-95560069 | None:intergenic | 40.0% | |
| TTGTGCTGGGAAAGAAGAAA+GGG | + | chr6_3:95560288-95560307 | Msa0966830:CDS | 40.0% | |
| AAGAAGAAAGGGTTTGAACC+GGG | + | chr6_3:95560299-95560318 | Msa0966830:CDS | 40.0% | |
| TGAAAAACAAACCGTGGATC+CGG | - | chr6_3:95560368-95560387 | None:intergenic | 40.0% | |
| CTCTATGCTAATGTTAGCCA+TGG | + | chr6_3:95560542-95560561 | Msa0966830:intron | 40.0% | |
| !!! | TTGGCTAGTTTTACAAGTGG+TGG | + | chr6_3:95561257-95561276 | Msa0966830:intron | 40.0% |
| TCATTATCATGTCTCTCTCG+TGG | + | chr6_3:95561447-95561466 | Msa0966830:intron | 40.0% | |
| GGTTTATGTCCCTCAAATTC+TGG | + | chr6_3:95562082-95562101 | Msa0966830:intron | 40.0% | |
| CTTGTCTGTTTGACCAAATC+TGG | - | chr6_3:95562604-95562623 | None:intergenic | 40.0% | |
| CTATGCAATTCATGATCACG+AGG | - | chr6_3:95562966-95562985 | None:intergenic | 40.0% | |
| TTGCAAACACTCCTAGTAGA+TGG | + | chr6_3:95563147-95563166 | Msa0966830:CDS | 40.0% | |
| ACACTCCTAGTAGATGGAAA+AGG | + | chr6_3:95563153-95563172 | Msa0966830:CDS | 40.0% | |
| CACTCCTAGTAGATGGAAAA+GGG | + | chr6_3:95563154-95563173 | Msa0966830:CDS | 40.0% | |
| ! | AATGCCCTTTTCCATCTACT+AGG | - | chr6_3:95563161-95563180 | None:intergenic | 40.0% |
| !! | AAAAGTGTTCAAGAGCGTCA+CGG | + | chr6_3:95563182-95563201 | Msa0966830:CDS | 40.0% |
| ATAACAGTTCACGATCTCTC+TGG | + | chr6_3:95563227-95563246 | Msa0966830:CDS | 40.0% | |
| ! | AGAGTATCAAGATCAAACCC+CGG | + | chr6_3:95563308-95563327 | Msa0966830:CDS | 40.0% |
| TGGCTAATTCTTCGTCCAAA+CGG | + | chr6_3:95563335-95563354 | Msa0966830:CDS | 40.0% | |
| AAAAGGTCATGTAGATGGCT+TGG | + | chr6_3:95563409-95563428 | Msa0966830:CDS | 40.0% | |
| AAAGGTCATGTAGATGGCTT+GGG | + | chr6_3:95563410-95563429 | Msa0966830:CDS | 40.0% | |
| ! | GTGATGAGTTCTAGTGTTGA+AGG | + | chr6_3:95563584-95563603 | Msa0966830:CDS | 40.0% |
| ! | AGTTCTAGTGTTGAAGGTGA+AGG | + | chr6_3:95563590-95563609 | Msa0966830:CDS | 40.0% |
| !!! | GGTGATGGTTTTGTTGGTGA+TGG | - | chr6_3:95559939-95559958 | None:intergenic | 45.0% |
| ! | GGAAGAAGTGTGGTTTGAGA+AGG | - | chr6_3:95560029-95560048 | None:intergenic | 45.0% |
| TGAAGAGAGTGGAAGAAGTG+TGG | - | chr6_3:95560039-95560058 | None:intergenic | 45.0% | |
| CATACACAGACAAACGCAGA+GGG | - | chr6_3:95560151-95560170 | None:intergenic | 45.0% | |
| ! | TCTGTGTATGCTGGAAGCAT+GGG | + | chr6_3:95560161-95560180 | Msa0966830:CDS | 45.0% |
| CTTGTGCTGGGAAAGAAGAA+AGG | + | chr6_3:95560287-95560306 | Msa0966830:CDS | 45.0% | |
| TGAACCGGGAAAGAAGGATT+CGG | + | chr6_3:95560313-95560332 | Msa0966830:CDS | 45.0% | |
| AAAACCACCGGACTACATTC+CGG | - | chr6_3:95560404-95560423 | None:intergenic | 45.0% | |
| !! | ACAAGTGGTGGACCACATTA+TGG | + | chr6_3:95561269-95561288 | Msa0966830:intron | 45.0% |
| CCAGATACTAGCACATGGTA+GGG | - | chr6_3:95562667-95562686 | None:intergenic | 45.0% | |
| ACCAGATACTAGCACATGGT+AGG | - | chr6_3:95562668-95562687 | None:intergenic | 45.0% | |
| TGCTACCAGATACTAGCACA+TGG | - | chr6_3:95562672-95562691 | None:intergenic | 45.0% | |
| !! | ACTCGGATATTGATTCCCTG+CGG | - | chr6_3:95562919-95562938 | None:intergenic | 45.0% |
| GACAAATGGTGTGACCATTG+AGG | - | chr6_3:95563270-95563289 | None:intergenic | 45.0% | |
| TTGATACTCTGTCTGAGCCT+GGG | - | chr6_3:95563298-95563317 | None:intergenic | 45.0% | |
| AGTGAGTAGCTGGAAACCAT+GGG | + | chr6_3:95563364-95563383 | Msa0966830:CDS | 45.0% | |
| TTGTGTTCAAGGTTACCACC+AGG | + | chr6_3:95563551-95563570 | Msa0966830:CDS | 45.0% | |
| TCAAGGTTACCACCAGGTAA+AGG | + | chr6_3:95563557-95563576 | Msa0966830:CDS | 45.0% | |
| CAAGGTTACCACCAGGTAAA+GGG | + | chr6_3:95563558-95563577 | Msa0966830:CDS | 45.0% | |
| ATCACAAACCCTTTACCTGG+TGG | - | chr6_3:95563569-95563588 | None:intergenic | 45.0% | |
| CTCATCACAAACCCTTTACC+TGG | - | chr6_3:95563572-95563591 | None:intergenic | 45.0% | |
| TGTGCACCAACTTGCACAAA+AGG | - | chr6_3:95563629-95563648 | None:intergenic | 45.0% | |
| !!! | TTAATTAATTTTTTTTTTGA+AGG | - | chr6_3:95561214-95561233 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTTTATTTTACT+CGG | - | chr6_3:95562936-95562955 | None:intergenic | 5.0% |
| ACAGACAAACGCAGAGGGAT+AGG | - | chr6_3:95560146-95560165 | None:intergenic | 50.0% | |
| GCATACACAGACAAACGCAG+AGG | - | chr6_3:95560152-95560171 | None:intergenic | 50.0% | |
| CTGCGTTTGTCTGTGTATGC+TGG | + | chr6_3:95560152-95560171 | Msa0966830:CDS | 50.0% | |
| GTCTGTGTATGCTGGAAGCA+TGG | + | chr6_3:95560160-95560179 | Msa0966830:CDS | 50.0% | |
| !! | TCATAGTGGATGGCTTGTGC+TGG | + | chr6_3:95560274-95560293 | Msa0966830:CDS | 50.0% |
| !! | CATAGTGGATGGCTTGTGCT+GGG | + | chr6_3:95560275-95560294 | Msa0966830:CDS | 50.0% |
| AGGGTTTGAACCGGGAAAGA+AGG | + | chr6_3:95560307-95560326 | Msa0966830:CDS | 50.0% | |
| CTCGGGTTCATTTCGTGGTT+CGG | + | chr6_3:95560336-95560355 | Msa0966830:CDS | 50.0% | |
| !! | TTTCGTGGTTCGGTCTGAAC+CGG | + | chr6_3:95560346-95560365 | Msa0966830:CDS | 50.0% |
| AGGTGAACCGGAATGTAGTC+CGG | + | chr6_3:95560394-95560413 | Msa0966830:CDS | 50.0% | |
| !! | AGTGGTGGACCACATTATGG+TGG | + | chr6_3:95561272-95561291 | Msa0966830:intron | 50.0% |
| !! | GTGGTGGACCACATTATGGT+GGG | + | chr6_3:95561273-95561292 | Msa0966830:intron | 50.0% |
| TCAGGTGCACATGCTTAGTC+TGG | + | chr6_3:95561401-95561420 | Msa0966830:intron | 50.0% | |
| CCCTACCATGTGCTAGTATC+TGG | + | chr6_3:95562664-95562683 | Msa0966830:intron | 50.0% | |
| TACCGTCACTATTTGACCGC+AGG | + | chr6_3:95562900-95562919 | Msa0966830:intron | 50.0% | |
| ACCGTCACTATTTGACCGCA+GGG | + | chr6_3:95562901-95562920 | Msa0966830:intron | 50.0% | |
| TCCCTGCGGTCAAATAGTGA+CGG | - | chr6_3:95562905-95562924 | None:intergenic | 50.0% | |
| CGTCACGGACGAGAAAGAAA+GGG | + | chr6_3:95563197-95563216 | Msa0966830:CDS | 50.0% | |
| ACGGACGAGAAAGAAAGGGT+TGG | + | chr6_3:95563201-95563220 | Msa0966830:CDS | 50.0% | |
| ! | TCACGATCTCTCTGGTTCAC+CGG | + | chr6_3:95563235-95563254 | Msa0966830:CDS | 50.0% |
| TGATACTCTGTCTGAGCCTG+GGG | - | chr6_3:95563297-95563316 | None:intergenic | 50.0% | |
| CTTGATACTCTGTCTGAGCC+TGG | - | chr6_3:95563299-95563318 | None:intergenic | 50.0% | |
| ACGAAGAATTAGCCATGCGC+CGG | - | chr6_3:95563330-95563349 | None:intergenic | 50.0% | |
| TGGTTTCCAGCTACTCACTG+AGG | - | chr6_3:95563363-95563382 | None:intergenic | 50.0% | |
| CAGTGAGTAGCTGGAAACCA+TGG | + | chr6_3:95563363-95563382 | Msa0966830:CDS | 50.0% | |
| GTGAGTAGCTGGAAACCATG+GGG | + | chr6_3:95563365-95563384 | Msa0966830:CDS | 50.0% | |
| CATGCTTCTAAACGTCCCCA+TGG | - | chr6_3:95563383-95563402 | None:intergenic | 50.0% | |
| CATGGGGACGTTTAGAAGCA+TGG | + | chr6_3:95563381-95563400 | Msa0966830:CDS | 50.0% | |
| GTCGAGGTGGAAACCATCAG+CGG | - | chr6_3:95560093-95560112 | None:intergenic | 55.0% | |
| TGTGAGACGCTGGAGTGCAT+TGG | - | chr6_3:95560117-95560136 | None:intergenic | 55.0% | |
| AATGCACTCCAGCGTCTCAC+AGG | + | chr6_3:95560116-95560135 | Msa0966830:CDS | 55.0% | |
| TAGGTTTGCCTGTGAGACGC+TGG | - | chr6_3:95560127-95560146 | None:intergenic | 55.0% | |
| ! | GGAAGCATGGGTCGAACTTG+CGG | + | chr6_3:95560173-95560192 | Msa0966830:CDS | 55.0% |
| CGAGCCGAATCCTTCTTTCC+CGG | - | chr6_3:95560320-95560339 | None:intergenic | 55.0% | |
| CGGGAAAGAAGGATTCGGCT+CGG | + | chr6_3:95560318-95560337 | Msa0966830:CDS | 55.0% | |
| GGGAAAGAAGGATTCGGCTC+GGG | + | chr6_3:95560319-95560338 | Msa0966830:CDS | 55.0% | |
| !! | TTCGGCTCGGGTTCATTTCG+TGG | + | chr6_3:95560331-95560350 | Msa0966830:CDS | 55.0% |
| TTCGGTCTGAACCGGATCCA+CGG | + | chr6_3:95560354-95560373 | Msa0966830:CDS | 55.0% | |
| TGAACCGGAATGTAGTCCGG+TGG | + | chr6_3:95560397-95560416 | Msa0966830:CDS | 55.0% | |
| GCGTCACGGACGAGAAAGAA+AGG | + | chr6_3:95563196-95563215 | Msa0966830:CDS | 55.0% | |
| ACCATTGAGGCTGCAGCAAC+CGG | - | chr6_3:95563257-95563276 | None:intergenic | 55.0% | |
| ACACCATTTGTCCCATCCCC+AGG | + | chr6_3:95563278-95563297 | Msa0966830:CDS | 55.0% | |
| GAAGAATTAGCCATGCGCCG+GGG | - | chr6_3:95563328-95563347 | None:intergenic | 55.0% | |
| CGAAGAATTAGCCATGCGCC+GGG | - | chr6_3:95563329-95563348 | None:intergenic | 55.0% | |
| TCAGCGGAGCTGGTGGTTTC+AGG | - | chr6_3:95560077-95560096 | None:intergenic | 60.0% | |
| GAAACCACCAGCTCCGCTGA+TGG | + | chr6_3:95560077-95560096 | Msa0966830:CDS | 60.0% | |
| GAAACCATCAGCGGAGCTGG+TGG | - | chr6_3:95560084-95560103 | None:intergenic | 60.0% | |
| GTGGAAACCATCAGCGGAGC+TGG | - | chr6_3:95560087-95560106 | None:intergenic | 60.0% | |
| GGAGTGCATTGGAGTCGAGG+TGG | - | chr6_3:95560106-95560125 | None:intergenic | 60.0% | |
| GCTGGAGTGCATTGGAGTCG+AGG | - | chr6_3:95560109-95560128 | None:intergenic | 60.0% | |
| ACCGGTTGCTGCAGCCTCAA+TGG | + | chr6_3:95563253-95563272 | Msa0966830:CDS | 60.0% | |
| GAGCCTGGGGATGGGACAAA+TGG | - | chr6_3:95563284-95563303 | None:intergenic | 60.0% | |
| CTCTGTCTGAGCCTGGGGAT+GGG | - | chr6_3:95563292-95563311 | None:intergenic | 60.0% | |
| ACTCTGTCTGAGCCTGGGGA+TGG | - | chr6_3:95563293-95563312 | None:intergenic | 60.0% | |
| CAAGATCAAACCCCGGCGCA+TGG | + | chr6_3:95563315-95563334 | Msa0966830:CDS | 60.0% | |
| !! | CTACTCACTGAGGCGCCGTT+TGG | - | chr6_3:95563353-95563372 | None:intergenic | 60.0% |
| ACGGCGCCTCAGTGAGTAGC+TGG | + | chr6_3:95563354-95563373 | Msa0966830:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 95559744 | 95563787 | 95559744 | ID=Msa0966830;Name=Msa0966830 |
| chr6_3 | mRNA | 95559744 | 95563787 | 95559744 | ID=Msa0966830-mRNA-1;Parent=Msa0966830;Name=Msa0966830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=138|1|0.5|1|1|1|2|0|423 |
| chr6_3 | exon | 95559744 | 95560495 | 95559744 | ID=Msa0966830-mRNA-1:exon:17699;Parent=Msa0966830-mRNA-1 |
| chr6_3 | exon | 95563130 | 95563787 | 95563130 | ID=Msa0966830-mRNA-1:exon:17700;Parent=Msa0966830-mRNA-1 |
| chr6_3 | five_prime_UTR | 95559744 | 95559881 | 95559744 | ID=Msa0966830-mRNA-1:five_prime_utr;Parent=Msa0966830-mRNA-1 |
| chr6_3 | CDS | 95559882 | 95560495 | 95559882 | ID=Msa0966830-mRNA-1:cds;Parent=Msa0966830-mRNA-1 |
| chr6_3 | CDS | 95563130 | 95563787 | 95563130 | ID=Msa0966830-mRNA-1:cds;Parent=Msa0966830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
