AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1002670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002670 MtrunA17_Chr7g0265111 97.034 472 14 0 1 472 46 517 0.0 946
Msa1002670 MtrunA17_Chr1g0179901 65.344 479 157 4 1 474 23 497 0.0 644
Msa1002670 MtrunA17_Chr5g0419771 62.630 479 169 5 1 474 43 516 0.0 624
Msa1002670 MtrunA17_Chr7g0265041 51.033 484 220 9 1 475 18 493 2.88e-162 468
Msa1002670 MtrunA17_Chr7g0265051 51.566 479 215 10 1 471 16 485 3.23e-159 461
Msa1002670 MtrunA17_Chr7g0265101 51.245 482 214 10 1 471 16 487 3.27e-159 461
Msa1002670 MtrunA17_Chr4g0011051 49.275 483 233 6 1 476 16 493 1.21e-157 456
Msa1002670 MtrunA17_Chr7g0275681 49.895 477 221 8 1 472 19 482 1.38e-156 453
Msa1002670 MtrunA17_Chr5g0419761 48.755 482 233 7 1 475 16 490 1.30e-154 448
Msa1002670 MtrunA17_Chr7g0265151 48.857 481 224 9 1 471 16 484 2.87e-154 447
Msa1002670 MtrunA17_Chr7g0265141 44.259 479 247 8 1 469 16 484 1.28e-133 395
Msa1002670 MtrunA17_Chr8g0366391 40.994 483 257 12 1 473 16 480 9.76e-119 357
Msa1002670 MtrunA17_Chr4g0044501 40.292 479 263 9 1 473 17 478 8.33e-117 352
Msa1002670 MtrunA17_Chr4g0044511 41.423 478 252 13 1 470 47 504 1.07e-115 349
Msa1002670 MtrunA17_Chr4g0066151 38.542 480 260 13 1 470 25 479 5.50e-111 337
Msa1002670 MtrunA17_Chr7g0243631 38.958 480 276 8 2 474 21 490 8.08e-111 337
Msa1002670 MtrunA17_Chr7g0243681 38.542 480 273 9 2 474 19 483 5.44e-109 332
Msa1002670 MtrunA17_Chr7g0243931 38.750 480 277 9 2 474 25 494 3.78e-107 327
Msa1002670 MtrunA17_Chr7g0235051 38.429 471 250 10 2 469 19 452 4.24e-105 321
Msa1002670 MtrunA17_Chr5g0401851 37.996 479 276 9 1 470 17 483 8.67e-105 321
Msa1002670 MtrunA17_Chr4g0044481 42.271 414 206 7 1 414 34 414 2.06e-103 315
Msa1002670 MtrunA17_Chr7g0243871 37.214 481 275 10 1 474 16 476 2.93e-103 317
Msa1002670 MtrunA17_Chr7g0243861 38.446 489 266 11 2 474 22 491 7.33e-103 316
Msa1002670 MtrunA17_Chr7g0243781 36.458 480 281 8 2 474 17 479 7.65e-103 316
Msa1002670 MtrunA17_Chr8g0355221 37.996 479 274 10 1 470 22 486 9.56e-103 316
Msa1002670 MtrunA17_Chr4g0066131 37.526 477 263 13 1 467 20 471 4.61e-102 313
Msa1002670 MtrunA17_Chr7g0243771 37.681 483 274 11 2 474 14 479 5.42e-102 313
Msa1002670 MtrunA17_Chr7g0243801 37.474 483 275 11 2 474 15 480 7.22e-102 313
Msa1002670 MtrunA17_Chr4g0060511 38.095 483 279 11 2 474 19 491 1.08e-101 313
Msa1002670 MtrunA17_Chr7g0243951 37.888 483 276 11 2 474 19 487 1.11e-101 313
Msa1002670 MtrunA17_Chr5g0416741 38.351 485 275 9 1 476 20 489 3.15e-99 307
Msa1002670 MtrunA17_Chr4g0044521 37.924 472 260 10 4 468 19 464 6.07e-99 305
Msa1002670 MtrunA17_Chr6g0463891 38.683 486 274 10 1 476 19 490 1.66e-98 305
Msa1002670 MtrunA17_Chr4g0066221 38.174 482 265 14 2 470 19 480 1.68e-98 305
Msa1002670 MtrunA17_Chr4g0066261 36.885 488 274 12 1 474 18 485 2.57e-96 299
Msa1002670 MtrunA17_Chr4g0014061 37.474 475 270 12 1 468 16 470 5.03e-94 293
Msa1002670 MtrunA17_Chr1g0165701 36.820 478 278 12 1 470 22 483 1.62e-93 292
Msa1002670 MtrunA17_Chr4g0066281 36.439 483 269 12 2 476 20 472 3.13e-93 291
Msa1002670 MtrunA17_Chr4g0066171 35.331 484 272 15 1 474 28 480 1.17e-91 287
Msa1002670 MtrunA17_Chr7g0243761 36.100 482 257 11 2 474 19 458 1.45e-89 281
Msa1002670 MtrunA17_Chr7g0243851 34.765 489 242 11 2 474 19 446 7.91e-89 278
Msa1002670 MtrunA17_Chr4g0066201 35.404 483 274 15 1 474 25 478 1.17e-88 279
Msa1002670 MtrunA17_Chr6g0463861 34.888 493 269 15 1 474 18 477 1.36e-88 279
Msa1002670 MtrunA17_Chr2g0294931 35.331 484 279 12 1 470 18 481 4.67e-88 278
Msa1002670 MtrunA17_Chr8g0374971 34.560 489 284 14 1 475 19 485 7.14e-85 269
Msa1002670 MtrunA17_Chr2g0294921 35.772 492 274 16 1 474 167 634 3.25e-84 272
Msa1002670 MtrunA17_Chr5g0416821 35.331 484 278 11 2 476 22 479 4.03e-83 265
Msa1002670 MtrunA17_Chr5g0428081 35.174 489 277 16 2 474 19 483 4.14e-83 265
Msa1002670 MtrunA17_Chr7g0243811 35.610 410 244 7 8 415 3 394 1.64e-79 253
Msa1002670 MtrunA17_Chr8g0374931 33.740 492 284 15 1 474 18 485 1.89e-79 255
Msa1002670 MtrunA17_Chr8g0374901 33.265 487 289 16 1 474 19 482 1.52e-78 253
Msa1002670 MtrunA17_Chr6g0463851 34.888 493 268 16 2 470 19 482 2.09e-78 253
Msa1002670 MtrunA17_Chr7g0218311 34.082 490 282 17 1 474 23 487 2.10e-77 250
Msa1002670 MtrunA17_Chr8g0374941 34.504 484 281 13 1 470 956 1417 3.07e-77 263
Msa1002670 MtrunA17_Chr8g0374941 34.188 468 276 13 1 456 18 465 5.12e-75 256
Msa1002670 MtrunA17_Chr8g0374941 33.191 467 274 14 1 452 483 926 5.23e-67 233
Msa1002670 MtrunA17_Chr5g0410941 33.539 486 281 16 1 470 30 489 6.79e-77 249
Msa1002670 MtrunA17_Chr8g0350881 34.156 486 280 16 1 470 19 480 1.93e-75 245
Msa1002670 MtrunA17_Chr2g0294941 36.927 371 200 11 101 455 12 364 2.06e-70 228
Msa1002670 MtrunA17_Chr2g0329111 31.621 506 281 19 1 477 13 482 2.09e-63 213
Msa1002670 MtrunA17_Chr5g0440421 31.000 500 298 17 1 473 17 496 5.65e-63 212
Msa1002670 MtrunA17_Chr7g0243711 43.775 249 131 5 229 474 78 320 2.49e-56 190
Msa1002670 MtrunA17_Chr7g0243611 38.535 314 163 10 115 421 5 295 2.48e-53 181
Msa1002670 MtrunA17_Chr2g0307961 29.532 491 283 17 2 471 21 469 2.42e-52 183
Msa1002670 MtrunA17_Chr6g0464881 28.337 487 278 18 4 471 21 455 4.94e-50 177
Msa1002670 MtrunA17_Chr8g0357361 45.771 201 100 4 199 399 61 252 5.58e-50 171
Msa1002670 MtrunA17_Chr5g0442541 29.600 500 278 18 2 472 13 467 1.50e-49 176
Msa1002670 MtrunA17_Chr8g0361411 28.921 491 278 15 4 474 18 457 3.51e-49 174
Msa1002670 MtrunA17_Chr6g0464921 28.274 481 285 19 4 470 21 455 1.37e-48 173
Msa1002670 MtrunA17_Chr7g0231631 40.000 280 143 6 200 476 8 265 1.62e-48 167
Msa1002670 MtrunA17_Chr6g0464871 28.632 475 280 20 2 463 31 459 1.96e-48 173
Msa1002670 MtrunA17_Chr2g0278711 27.733 494 294 17 4 471 21 477 1.23e-47 171
Msa1002670 MtrunA17_Chr3g0118691 28.745 494 291 18 4 471 25 483 3.88e-47 170
Msa1002670 MtrunA17_Chr5g0420801 28.367 490 290 16 2 473 15 461 5.50e-47 169
Msa1002670 MtrunA17_Chr1g0159551 27.917 480 293 13 2 470 22 459 7.77e-47 168
Msa1002670 MtrunA17_Chr6g0464841 28.118 473 281 17 4 463 21 447 7.97e-47 168
Msa1002670 MtrunA17_Chr6g0462531 28.862 492 268 18 1 459 11 453 1.07e-46 168
Msa1002670 MtrunA17_Chr8g0377921 27.721 487 297 15 4 471 14 464 2.56e-46 167
Msa1002670 MtrunA17_Chr3g0079731 29.389 507 272 19 4 468 16 478 4.13e-46 167
Msa1002670 MtrunA17_Chr4g0066141 50.299 167 75 4 312 474 193 355 4.32e-46 164
Msa1002670 MtrunA17_Chr4g0066141 28.042 189 119 6 23 211 9 180 4.27e-15 76.6
Msa1002670 MtrunA17_Chr5g0429711 27.846 492 279 21 4 470 21 461 6.10e-46 166
Msa1002670 MtrunA17_Chr3g0118701 27.733 494 296 17 4 471 25 483 7.87e-46 166
Msa1002670 MtrunA17_Chr6g0464861 27.406 478 281 17 2 463 19 446 8.67e-46 165
Msa1002670 MtrunA17_Chr3g0121991 27.403 489 301 14 4 470 89 545 2.26e-45 166
Msa1002670 MtrunA17_Chr1g0207971 25.527 474 312 15 2 470 16 453 8.94e-45 162
Msa1002670 MtrunA17_Chr8g0347281 27.049 488 278 17 4 463 28 465 1.07e-44 163
Msa1002670 MtrunA17_Chr1g0207951 26.638 473 309 14 2 470 132 570 2.13e-44 167
Msa1002670 MtrunA17_Chr1g0207951 25.053 475 316 16 4 470 666 1108 3.31e-39 151
Msa1002670 MtrunA17_Chr5g0412111 30.266 489 281 17 2 470 13 461 2.27e-44 162
Msa1002670 MtrunA17_Chr3g0118671 27.054 499 297 19 2 471 14 474 3.80e-44 161
Msa1002670 MtrunA17_Chr5g0431371 26.327 471 301 14 4 470 20 448 4.11e-44 160
Msa1002670 MtrunA17_Chr8g0370941 25.400 500 299 14 4 464 18 482 4.69e-44 162
Msa1002670 MtrunA17_Chr3g0122001 28.252 492 293 16 4 470 496 952 7.27e-44 165
Msa1002670 MtrunA17_Chr3g0122001 27.236 492 299 15 4 470 16 473 3.31e-42 160
Msa1002670 MtrunA17_Chr5g0448521 27.510 498 289 17 4 472 15 469 8.50e-44 160
Msa1002670 MtrunA17_Chr3g0118771 26.962 497 300 18 2 471 29 489 1.23e-43 160
Msa1002670 MtrunA17_Chr8g0347271 27.459 488 276 18 4 463 29 466 2.12e-43 159
Msa1002670 MtrunA17_Chr8g0369341 27.423 485 301 16 2 468 15 466 2.28e-43 159
Msa1002670 MtrunA17_Chr5g0431361 26.860 484 285 15 4 470 22 453 2.68e-43 159
Msa1002670 MtrunA17_Chr5g0412131 28.631 482 299 14 2 470 20 469 2.79e-43 159
Msa1002670 MtrunA17_Chr3g0078841 27.530 494 301 17 2 471 18 478 2.92e-43 159
Msa1002670 MtrunA17_Chr6g0462551 28.313 498 265 18 4 463 14 457 4.69e-43 158
Msa1002670 MtrunA17_Chr1g0207831 27.557 479 306 19 2 470 16 463 4.90e-43 158
Msa1002670 MtrunA17_Chr5g0431421 26.752 471 301 14 4 471 20 449 5.98e-43 157
Msa1002670 MtrunA17_Chr1g0173121 28.425 489 282 16 2 470 22 462 6.73e-43 157
Msa1002670 MtrunA17_Chr2g0302961 26.572 493 298 17 2 470 13 465 7.61e-43 157
Msa1002670 MtrunA17_Chr3g0092641 28.024 496 294 19 2 471 20 478 9.34e-43 157
Msa1002670 MtrunA17_Chr5g0442521 26.800 500 302 17 2 472 13 477 1.14e-42 157
Msa1002670 MtrunA17_Chr5g0426431 27.530 494 299 19 2 471 20 478 1.67e-42 157
Msa1002670 MtrunA17_Chr2g0302991 27.310 487 295 18 4 470 15 462 2.22e-42 156
Msa1002670 MtrunA17_Chr8g0336331 27.733 494 299 17 2 471 18 477 2.35e-42 156
Msa1002670 MtrunA17_Chr7g0232411 28.600 493 281 21 2 466 12 461 3.10e-42 156
Msa1002670 MtrunA17_Chr8g0339451 34.520 281 145 7 199 463 199 456 3.87e-42 155
Msa1002670 MtrunA17_Chr3g0098111 25.523 478 322 14 2 470 17 469 4.55e-42 155
Msa1002670 MtrunA17_Chr4g0050341 29.317 498 283 21 2 467 27 487 5.75e-42 155
Msa1002670 MtrunA17_Chr5g0442581 26.969 508 290 18 3 471 12 477 6.44e-42 156
Msa1002670 MtrunA17_Chr5g0414331 28.125 480 291 17 2 472 21 455 7.29e-42 155
Msa1002670 MtrunA17_Chr8g0339601 34.875 281 144 7 199 463 66 323 7.40e-42 152
Msa1002670 MtrunA17_Chr8g0339631 28.319 452 255 14 56 466 41 464 8.42e-42 155
Msa1002670 MtrunA17_Chr3g0118711 26.008 496 306 17 2 471 21 481 1.08e-41 155
Msa1002670 MtrunA17_Chr5g0412101 29.339 484 294 15 2 470 20 470 1.32e-41 154
Msa1002670 MtrunA17_Chr6g0486251 33.750 320 172 10 158 466 170 460 1.71e-41 154
Msa1002670 MtrunA17_Chr6g0486201 33.750 320 172 10 158 466 170 460 1.71e-41 154
Msa1002670 MtrunA17_Chr6g0454341 26.761 497 297 19 4 471 20 478 2.07e-41 154
Msa1002670 MtrunA17_Chr8g0373301 26.923 494 286 14 16 466 1 462 2.66e-41 153
Msa1002670 MtrunA17_Chr5g0429681 27.273 484 299 17 4 471 54 500 2.89e-41 154
Msa1002670 MtrunA17_Chr8g0334861 33.030 330 179 7 161 475 166 468 3.35e-41 153
Msa1002670 MtrunA17_Chr7g0243911 40.201 199 114 4 259 455 20 215 3.75e-41 146
Msa1002670 MtrunA17_Chr4g0032331 27.572 486 289 16 4 475 18 454 7.20e-41 152
Msa1002670 MtrunA17_Chr6g0454361 30.357 392 214 14 105 471 124 481 9.22e-41 152
Msa1002670 MtrunA17_Chr6g0454301 27.634 503 285 22 4 471 273 731 1.11e-40 155
Msa1002670 MtrunA17_Chr6g0454301 32.000 250 138 9 226 469 5 228 2.80e-26 112
Msa1002670 MtrunA17_Chr6g0462571 27.869 488 277 16 4 463 14 454 1.17e-40 152
Msa1002670 MtrunA17_Chr5g0442601 28.024 496 298 18 4 472 414 877 1.51e-40 155
Msa1002670 MtrunA17_Chr5g0442601 29.180 305 169 9 105 396 63 333 3.98e-26 112
Msa1002670 MtrunA17_Chr5g0409591 27.384 409 225 13 88 445 75 462 1.63e-40 151
Msa1002670 MtrunA17_Chr3g0112761 28.571 483 284 18 4 473 18 452 2.52e-40 150
Msa1002670 MtrunA17_Chr6g0454321 26.804 485 290 18 4 460 20 467 6.37e-40 152
Msa1002670 MtrunA17_Chr7g0232391 27.328 494 286 19 2 466 12 461 6.46e-40 149
Msa1002670 MtrunA17_Chr5g0414321 28.008 482 289 18 2 472 19 453 6.99e-40 149
Msa1002670 MtrunA17_Chr8g0339461 33.216 283 148 7 199 464 207 465 9.84e-40 149
Msa1002670 MtrunA17_Chr3g0112771 26.240 484 300 16 4 477 22 458 1.05e-39 149
Msa1002670 MtrunA17_Chr6g0454401 27.345 501 292 20 4 471 20 481 1.09e-39 149
Msa1002670 MtrunA17_Chr5g0442511 25.253 495 282 14 4 470 59 493 1.17e-39 149
Msa1002670 MtrunA17_Chr8g0336651 35.689 283 144 6 197 464 978 1237 1.40e-39 153
Msa1002670 MtrunA17_Chr8g0336651 32.500 280 149 9 201 466 207 460 1.17e-33 135
Msa1002670 MtrunA17_Chr8g0336651 32.069 290 149 8 179 466 527 770 1.02e-32 132
Msa1002670 MtrunA17_Chr8g0359821 25.447 503 308 17 4 477 20 484 1.64e-39 149
Msa1002670 MtrunA17_Chr5g0442561 26.087 506 295 19 2 472 13 474 1.91e-39 148
Msa1002670 MtrunA17_Chr1g0207981 27.686 484 305 19 2 471 21 473 2.95e-39 148
Msa1002670 MtrunA17_Chr6g0459311 28.800 500 270 23 2 466 19 467 3.80e-39 147
Msa1002670 MtrunA17_Chr8g0335161 34.532 278 144 8 201 466 211 462 4.08e-39 147
Msa1002670 MtrunA17_Chr5g0442491 27.579 504 292 19 3 472 12 476 4.93e-39 147
Msa1002670 MtrunA17_Chr8g0336691 32.353 306 170 9 175 466 1093 1375 1.11e-38 150
Msa1002670 MtrunA17_Chr8g0336691 32.423 293 160 8 187 466 202 469 1.67e-35 140
Msa1002670 MtrunA17_Chr8g0336691 33.835 266 134 7 201 464 681 906 1.48e-31 129
Msa1002670 MtrunA17_Chr8g0335141 33.681 288 151 9 193 466 203 464 1.22e-38 146
Msa1002670 MtrunA17_Chr5g0431401 25.957 470 304 14 4 470 20 448 1.26e-38 145
Msa1002670 MtrunA17_Chr1g0161351 25.786 477 318 16 4 470 47 497 1.31e-38 147
Msa1002670 MtrunA17_Chr8g0365811 24.845 483 321 17 2 470 503 957 1.65e-38 149
Msa1002670 MtrunA17_Chr8g0365811 24.544 493 314 18 2 470 17 475 9.96e-34 135
Msa1002670 MtrunA17_Chr1g0207861 25.988 481 316 17 2 470 16 468 1.91e-38 146
Msa1002670 MtrunA17_Chr6g0453951 26.139 505 296 19 2 471 65 527 3.11e-38 146
Msa1002670 MtrunA17_Chr6g0454331 26.892 502 306 17 4 477 17 485 3.87e-38 145
Msa1002670 MtrunA17_Chr6g0454121 27.232 448 248 17 63 471 71 479 4.36e-38 145
Msa1002670 MtrunA17_Chr7g0217881 27.865 384 226 12 100 471 118 462 6.74e-38 144
Msa1002670 MtrunA17_Chr3g0118721 32.222 270 165 5 202 471 39 290 1.02e-37 139
Msa1002670 MtrunA17_Chr6g0462541 32.374 278 144 6 201 466 214 459 1.07e-37 144
Msa1002670 MtrunA17_Chr6g0462521 36.090 266 136 7 201 459 201 439 1.10e-37 143
Msa1002670 MtrunA17_Chr8g0361371 27.219 507 274 18 3 467 14 467 1.20e-37 143
Msa1002670 MtrunA17_Chr8g0334851 29.356 419 235 14 75 466 81 465 1.37e-37 143
Msa1002670 MtrunA17_Chr5g0431441 25.519 482 302 15 4 471 28 466 1.61e-37 143
Msa1002670 MtrunA17_Chr7g0275511 27.383 493 282 23 4 466 25 471 2.27e-37 143
Msa1002670 MtrunA17_Chr6g0449931 26.844 488 288 18 20 466 4 463 3.88e-37 142
Msa1002670 MtrunA17_Chr7g0232401 35.766 274 134 11 201 459 210 456 4.25e-37 142
Msa1002670 MtrunA17_Chr7g0249981 26.205 477 301 16 4 472 35 468 4.65e-37 142
Msa1002670 MtrunA17_Chr6g0454151 27.381 420 247 16 76 471 93 478 6.04e-37 142
Msa1002670 MtrunA17_Chr4g0053501 26.543 486 298 19 4 471 21 465 1.28e-36 141
Msa1002670 MtrunA17_Chr8g0339441 37.037 216 112 4 261 463 218 422 2.29e-36 139
Msa1002670 MtrunA17_Chr6g0454141 25.553 497 309 18 2 471 18 480 3.03e-36 140
Msa1002670 MtrunA17_Chr6g0454351 26.735 490 291 20 4 471 22 465 3.18e-36 139
Msa1002670 MtrunA17_Chr8g0377941 30.408 319 188 9 158 472 175 463 6.25e-36 139
Msa1002670 MtrunA17_Chr6g0454261 25.100 502 313 17 4 477 20 486 6.85e-36 139
Msa1002670 MtrunA17_Chr6g0454131 27.338 417 249 17 78 471 94 479 9.46e-36 138
Msa1002670 MtrunA17_Chr7g0232341 28.106 491 287 21 2 466 12 462 1.31e-35 137
Msa1002670 MtrunA17_Chr5g0401721 24.385 488 321 14 2 472 16 472 1.74e-35 137
Msa1002670 MtrunA17_Chr6g0452771 28.442 443 250 17 63 471 71 480 2.31e-35 137
Msa1002670 MtrunA17_Chr7g0218791 26.667 465 285 17 4 457 15 434 2.33e-35 136
Msa1002670 MtrunA17_Chr8g0380531 28.184 479 277 18 4 463 20 450 2.57e-35 137
Msa1002670 MtrunA17_Chr7g0232331 32.872 289 156 9 201 475 207 471 3.01e-35 137
Msa1002670 MtrunA17_Chr6g0454201 26.587 504 291 17 4 471 21 481 3.91e-35 136
Msa1002670 MtrunA17_Chr8g0336741 29.688 320 182 10 167 466 171 467 1.23e-34 135
Msa1002670 MtrunA17_Chr7g0232311 32.440 336 170 14 151 467 163 460 1.28e-34 135
Msa1002670 MtrunA17_Chr4g0053321 27.721 487 291 18 4 471 36 480 1.34e-34 135
Msa1002670 MtrunA17_Chr1g0207931 29.670 273 177 6 198 470 240 497 1.94e-34 135
Msa1002670 MtrunA17_Chr6g0454181 25.000 492 314 16 4 471 20 480 1.97e-34 134
Msa1002670 MtrunA17_Chr6g0454191 25.251 499 305 17 4 471 20 481 2.12e-34 134
Msa1002670 MtrunA17_Chr8g0382021 30.986 284 167 9 196 470 225 488 2.30e-34 134
Msa1002670 MtrunA17_Chr1g0153451 32.143 280 149 8 201 466 207 459 4.06e-34 133
Msa1002670 MtrunA17_Chr8g0336731 29.375 320 177 11 171 467 194 487 5.49e-34 134
Msa1002670 MtrunA17_Chr6g0454211 28.132 455 248 18 63 477 358 773 5.73e-34 135
Msa1002670 MtrunA17_Chr6g0454211 30.460 174 82 6 201 373 101 236 1.34e-14 76.6
Msa1002670 MtrunA17_Chr7g0241801 27.957 465 233 19 1 442 16 401 6.13e-34 132
Msa1002670 MtrunA17_Chr8g0334831 26.602 515 276 18 3 467 13 475 7.22e-34 133
Msa1002670 MtrunA17_Chr7g0241781 26.991 452 277 15 1 447 16 419 8.83e-34 132
Msa1002670 MtrunA17_Chr7g0218841 24.843 479 288 16 4 467 16 437 1.15e-33 132
Msa1002670 MtrunA17_Chr7g0218821 36.232 207 112 6 261 467 261 447 1.24e-33 132
Msa1002670 MtrunA17_Chr7g0218831 24.843 479 287 15 4 467 16 436 1.28e-33 131
Msa1002670 MtrunA17_Chr6g0454291 27.928 444 251 18 63 471 68 477 1.44e-33 132
Msa1002670 MtrunA17_Chr7g0249931 24.792 480 312 13 2 473 48 486 1.61e-33 132
Msa1002670 MtrunA17_Chr5g0403641 33.103 290 150 9 201 469 235 501 3.02e-33 132
Msa1002670 MtrunA17_Chr1g0153461 37.037 216 115 5 261 466 4 208 3.23e-33 125
Msa1002670 MtrunA17_Chr3g0118751 25.102 490 289 18 2 471 14 445 3.25e-33 130
Msa1002670 MtrunA17_Chr4g0042891 28.542 480 295 17 4 468 17 463 3.71e-33 130
Msa1002670 MtrunA17_Chr6g0453961 25.455 495 309 19 4 471 29 490 6.04e-33 130
Msa1002670 MtrunA17_Chr3g0106231 24.160 476 304 14 4 472 28 453 7.56e-33 130
Msa1002670 MtrunA17_Chr3g0118661 25.600 500 298 18 2 469 21 478 1.02e-32 130
Msa1002670 MtrunA17_Chr5g0423981 25.572 481 290 18 4 471 20 445 1.97e-32 128
Msa1002670 MtrunA17_Chr7g0250001 25.979 485 294 19 2 471 14 448 2.48e-32 128
Msa1002670 MtrunA17_Chr3g0079711 36.364 198 104 3 287 472 3 190 4.48e-32 121
Msa1002670 MtrunA17_Chr8g0367221 25.527 474 291 12 1 451 1295 1729 4.72e-32 130
Msa1002670 MtrunA17_Chr8g0367221 26.617 402 258 13 1 388 805 1183 2.87e-29 122
Msa1002670 MtrunA17_Chr8g0367221 24.877 406 259 12 1 388 19 396 3.57e-28 119
Msa1002670 MtrunA17_Chr5g0393591 23.333 480 288 15 2 470 25 435 2.32e-31 125
Msa1002670 MtrunA17_Chr8g0336251 26.185 401 264 11 2 389 15 396 2.85e-31 125
Msa1002670 MtrunA17_Chr8g0336321 26.185 401 264 11 2 389 15 396 2.99e-31 125
Msa1002670 MtrunA17_Chr4g0072761 31.013 316 171 12 157 468 178 450 4.05e-31 125
Msa1002670 MtrunA17_Chr6g0454221 31.687 243 143 6 229 469 8 229 4.83e-31 121
Msa1002670 MtrunA17_Chr7g0249961 32.870 216 126 6 258 473 66 262 6.85e-31 120
Msa1002670 MtrunA17_Chr5g0426401 31.295 278 164 10 201 474 60 314 6.90e-31 121
Msa1002670 MtrunA17_Chr6g0464091 28.341 434 225 17 1 394 25 412 1.34e-30 124
Msa1002670 MtrunA17_Chr6g0454271 30.108 279 166 8 203 477 40 293 2.02e-30 119
Msa1002670 MtrunA17_Chr6g0454251 29.676 401 228 18 4 373 17 394 2.17e-30 122
Msa1002670 MtrunA17_Chr5g0432731 26.154 325 202 7 161 473 1 299 2.91e-30 119
Msa1002670 MtrunA17_Chr7g0218811 32.850 207 119 6 261 467 260 446 6.07e-30 121
Msa1002670 MtrunA17_Chr4g0042931 28.392 479 273 21 4 457 17 450 4.13e-29 119
Msa1002670 MtrunA17_Chr4g0072771 26.543 486 277 20 5 468 36 463 1.23e-28 118
Msa1002670 MtrunA17_Chr6g0454371 32.474 194 101 5 284 471 2 171 1.28e-28 111
Msa1002670 MtrunA17_Chr1g0196851 25.895 475 266 16 1 445 56 474 2.17e-28 117
Msa1002670 MtrunA17_Chr7g0232351 35.652 230 113 9 163 373 165 378 2.53e-28 115
Msa1002670 MtrunA17_Chr6g0454171 28.720 289 159 10 191 471 61 310 3.01e-28 114
Msa1002670 MtrunA17_Chr3g0106251 27.941 272 167 6 202 472 52 295 4.24e-28 114
Msa1002670 MtrunA17_Chr7g0243921 33.721 172 111 2 2 173 48 216 6.30e-27 108
Msa1002670 MtrunA17_Chr4g0040711 27.016 496 287 21 1 472 15 459 4.45e-26 110
Msa1002670 MtrunA17_Chr4g0029131 25.270 463 281 16 1 445 19 434 7.26e-26 111
Msa1002670 MtrunA17_Chr6g0466831 26.329 414 252 12 1 394 25 405 1.32e-25 109
Msa1002670 MtrunA17_Chr4g0040691 25.696 467 283 15 1 448 15 436 1.43e-25 108
Msa1002670 MtrunA17_Chr6g0466841 25.845 414 254 12 1 394 25 405 4.24e-25 107
Msa1002670 MtrunA17_Chr5g0448551 27.655 452 255 23 2 434 15 413 1.00e-24 106
Msa1002670 MtrunA17_Chr8g0355011 26.494 385 218 14 100 477 42 368 1.16e-24 105
Msa1002670 MtrunA17_Chr4g0039881 24.466 421 245 15 4 394 2 379 1.42e-24 105
Msa1002670 MtrunA17_Chr2g0302851 26.303 422 242 16 1 394 23 403 2.74e-24 105
Msa1002670 MtrunA17_Chr2g0278721 26.464 427 249 17 1 394 524 918 2.38e-23 103
Msa1002670 MtrunA17_Chr2g0278721 24.750 400 267 13 1 390 22 397 2.78e-22 100
Msa1002670 MtrunA17_Chr4g0029151 33.679 193 113 4 258 445 260 442 2.52e-23 102
Msa1002670 MtrunA17_Chr7g0243731 56.338 71 31 0 331 401 6 76 2.93e-23 93.2
Msa1002670 MtrunA17_Chr6g0482061 26.572 493 278 20 4 458 21 467 5.41e-23 101
Msa1002670 MtrunA17_Chr4g0069611 24.684 474 276 20 1 450 22 438 7.69e-23 100
Msa1002670 MtrunA17_Chr2g0283041 25.412 425 282 12 1 417 14 411 9.16e-23 100
Msa1002670 MtrunA17_Chr2g0278741 25.108 462 285 18 1 444 104 522 1.26e-22 100
Msa1002670 MtrunA17_Chr8g0336261 35.220 159 73 5 284 435 2 137 2.51e-22 92.8
Msa1002670 MtrunA17_Chr5g0431431 30.256 195 105 4 202 391 156 324 2.64e-22 98.2
Msa1002670 MtrunA17_Chr8g0337381 39.259 135 67 4 333 466 1 121 7.65e-22 91.3
Msa1002670 MtrunA17_Chr3g0092031 32.338 201 100 6 259 450 2 175 7.57e-21 90.5
Msa1002670 MtrunA17_Chr5g0427571 30.102 196 119 4 202 389 45 230 1.25e-20 92.4
Msa1002670 MtrunA17_Chr7g0272701 32.414 145 88 3 69 207 11 151 2.85e-20 87.4
Msa1002670 MtrunA17_Chr1g0207881 35.172 145 82 5 327 470 251 384 4.52e-20 92.0
Msa1002670 MtrunA17_Chr2g0319731 25.895 475 278 21 1 453 32 454 7.24e-19 89.0
Msa1002670 MtrunA17_Chr2g0319801 25.786 477 276 18 1 453 15 437 4.36e-18 86.7
Msa1002670 MtrunA17_Chr7g0243721 38.686 137 77 4 171 306 5 135 1.01e-17 79.7
Msa1002670 MtrunA17_Chr2g0319791 26.154 455 293 17 1 448 15 433 2.51e-17 84.3
Msa1002670 MtrunA17_Chr2g0321331 43.434 99 55 1 268 366 91 188 4.10e-17 81.3
Msa1002670 MtrunA17_Chr2g0319761 24.101 473 294 18 1 455 15 440 1.01e-16 82.4
Msa1002670 MtrunA17_Chr6g0454231 32.468 154 81 4 324 473 87 221 3.17e-16 80.9
Msa1002670 MtrunA17_Chr7g0231651 27.841 176 122 3 2 173 22 196 1.28e-14 72.8
Msa1002670 MtrunA17_Chr2g0319751 24.946 465 286 19 1 448 492 910 1.75e-14 76.3
Msa1002670 MtrunA17_Chr2g0319751 24.516 465 264 21 1 448 15 409 3.36e-13 72.4
Msa1002670 MtrunA17_Chr5g0442501 22.082 317 206 10 4 307 15 303 1.24e-13 71.6
Msa1002670 MtrunA17_Chr7g0265071 51.613 62 29 1 414 474 1 62 2.96e-12 62.0
Msa1002670 MtrunA17_Chr6g0453981 30.597 134 86 4 201 333 101 228 1.39e-11 64.3
Msa1002670 MtrunA17_Chr4g0066241 36.364 121 62 5 156 275 43 149 1.58e-11 62.8
Msa1002670 MtrunA17_Chr4g0066231 38.462 78 47 1 372 449 1 77 8.20e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002670 AT2G36780.1 47.500 480 236 5 1 473 21 491 2.27e-158 458
Msa1002670 AT2G36800.1 47.401 481 236 6 1 473 19 490 1.31e-154 449
Msa1002670 AT2G36770.1 46.639 476 242 5 1 471 21 489 1.54e-154 449
Msa1002670 AT2G36760.1 46.973 479 236 4 1 471 21 489 1.65e-154 449
Msa1002670 AT2G36750.1 45.417 480 247 4 1 474 17 487 1.46e-151 441
Msa1002670 AT2G36790.1 47.292 480 237 5 1 473 20 490 3.55e-147 430
Msa1002670 AT3G53160.1 45.436 482 241 10 1 472 15 484 1.07e-143 421
Msa1002670 AT3G53150.1 45.492 488 245 8 1 472 29 511 1.65e-140 414
Msa1002670 AT2G15490.3 40.535 486 251 12 1 470 14 477 8.21e-114 344
Msa1002670 AT2G15480.1 39.712 486 255 11 1 470 17 480 1.61e-113 343
Msa1002670 AT2G15490.1 40.491 489 250 13 1 470 14 480 3.91e-113 342
Msa1002670 AT2G15480.2 39.192 495 255 11 1 470 17 490 1.08e-112 342
Msa1002670 AT4G34131.1 42.531 482 246 13 1 470 17 479 6.43e-111 337
Msa1002670 AT4G34138.1 39.917 481 258 12 1 470 18 478 9.59e-106 323
Msa1002670 AT4G34135.1 41.942 484 247 15 1 470 18 481 1.31e-101 313
Msa1002670 AT5G14860.1 33.603 494 271 18 1 470 15 475 2.18e-67 224
Msa1002670 AT1G10400.1 32.238 487 275 20 1 470 14 462 4.36e-65 218
Msa1002670 AT2G16890.2 31.967 488 278 19 1 470 16 467 1.57e-62 211
Msa1002670 AT5G12890.1 31.557 488 271 17 1 459 17 470 2.57e-61 208
Msa1002670 AT4G34135.2 38.154 325 179 10 1 313 18 332 7.13e-55 187
Msa1002670 AT2G16890.3 31.982 444 250 17 1 427 16 424 2.16e-53 185
Msa1002670 AT1G73880.1 29.899 495 277 18 2 473 22 469 5.59e-52 183
Msa1002670 AT1G06000.1 28.041 485 260 15 4 470 20 433 8.80e-50 176
Msa1002670 AT5G03490.1 27.329 483 290 12 2 470 27 462 1.89e-49 176
Msa1002670 AT1G22400.1 29.659 499 285 17 2 471 21 482 1.33e-48 174
Msa1002670 AT1G24100.1 31.687 486 265 16 4 470 21 458 9.84e-48 171
Msa1002670 AT1G22340.1 28.689 488 304 14 2 471 21 482 1.03e-46 169
Msa1002670 AT2G30150.1 27.292 480 286 16 4 470 7 436 1.17e-46 167
Msa1002670 AT1G22360.1 29.800 500 282 19 2 471 18 478 1.22e-46 169
Msa1002670 AT1G78270.1 27.515 487 310 12 2 471 21 481 1.71e-46 168
Msa1002670 AT1G51210.1 30.370 405 239 13 2 398 28 397 1.85e-46 167
Msa1002670 AT2G30150.2 27.292 480 286 16 4 470 23 452 2.55e-46 167
Msa1002670 AT1G22380.1 28.367 490 302 16 2 471 21 481 3.50e-46 167
Msa1002670 AT2G31750.1 31.092 476 282 18 4 471 18 455 5.33e-46 166
Msa1002670 AT2G31750.2 30.271 479 282 16 4 471 18 455 1.64e-45 166
Msa1002670 AT1G07260.1 28.834 489 299 15 2 471 14 472 2.92e-45 165
Msa1002670 AT2G18570.1 28.601 486 280 20 4 463 15 459 3.21e-45 164
Msa1002670 AT2G29740.1 30.200 500 275 21 3 470 17 474 4.68e-45 164
Msa1002670 AT3G16520.3 27.807 374 230 10 106 469 115 458 6.01e-45 164
Msa1002670 AT2G29730.1 27.800 500 284 19 4 474 15 466 8.85e-45 163
Msa1002670 AT1G07250.1 35.000 320 174 11 158 472 184 474 2.43e-44 162
Msa1002670 AT3G11340.1 28.337 487 274 18 4 473 19 447 5.88e-44 160
Msa1002670 AT5G49690.1 29.060 468 261 17 1 448 17 433 3.26e-43 159
Msa1002670 AT5G26310.1 26.829 492 280 19 4 463 17 460 1.08e-42 158
Msa1002670 AT2G29710.1 32.581 310 179 8 171 471 175 463 2.16e-42 157
Msa1002670 AT2G43840.2 28.810 479 280 18 4 470 17 446 2.50e-42 156
Msa1002670 AT4G01070.1 25.813 492 290 14 4 466 18 463 3.90e-42 156
Msa1002670 AT2G43840.1 28.810 479 280 18 4 470 17 446 4.55e-42 155
Msa1002670 AT1G22360.2 27.856 499 281 17 2 471 18 466 7.29e-42 155
Msa1002670 AT5G05870.1 28.157 483 285 18 4 470 18 454 1.03e-41 155
Msa1002670 AT3G16520.1 27.577 359 220 10 107 455 116 444 4.04e-41 153
Msa1002670 AT4G14090.1 27.178 482 289 17 2 469 21 454 4.27e-41 153
Msa1002670 AT3G16520.2 27.500 360 221 10 106 455 115 444 4.86e-41 152
Msa1002670 AT1G01420.1 26.446 484 290 14 4 463 18 459 9.97e-41 152
Msa1002670 AT1G01420.2 26.446 484 290 14 4 463 21 462 1.06e-40 152
Msa1002670 AT1G22370.2 28.163 490 298 16 2 471 21 476 2.61e-40 151
Msa1002670 AT4G15480.1 26.392 485 304 19 4 470 29 478 4.40e-40 151
Msa1002670 AT1G05560.1 26.087 483 299 15 2 470 13 451 5.02e-40 150
Msa1002670 AT4G15260.1 33.803 284 155 7 201 472 94 356 6.53e-40 147
Msa1002670 AT1G05560.2 26.087 483 299 15 2 470 63 501 1.05e-39 150
Msa1002670 AT3G02100.1 27.984 486 280 16 2 467 21 456 1.08e-39 149
Msa1002670 AT2G43820.1 28.361 476 286 18 4 470 17 446 1.35e-39 149
Msa1002670 AT2G30140.1 26.096 479 296 15 4 472 23 453 1.35e-39 149
Msa1002670 AT1G05675.1 28.085 470 292 12 2 463 14 445 2.48e-39 148
Msa1002670 AT4G15550.1 28.198 383 230 13 101 469 121 472 2.52e-39 148
Msa1002670 AT1G05530.1 29.333 375 230 12 105 471 108 455 3.14e-39 148
Msa1002670 AT4G15280.1 28.257 499 291 21 4 472 14 475 4.39e-39 148
Msa1002670 AT1G05680.1 27.350 468 294 14 4 463 16 445 7.72e-39 147
Msa1002670 AT4G15280.2 28.257 499 291 21 4 472 46 507 9.02e-39 147
Msa1002670 AT2G30140.2 26.250 480 293 17 4 472 23 452 1.16e-38 146
Msa1002670 AT2G29750.1 31.627 332 189 10 147 472 176 475 8.79e-38 144
Msa1002670 AT1G07240.1 24.846 487 322 13 4 471 15 476 9.77e-38 144
Msa1002670 AT3G21760.1 27.778 504 290 20 4 470 14 480 1.37e-37 144
Msa1002670 AT3G21790.1 27.163 497 300 19 4 470 14 478 1.73e-37 144
Msa1002670 AT3G21560.1 24.689 482 317 15 4 470 22 472 1.89e-37 144
Msa1002670 AT3G50740.1 29.210 291 158 8 201 469 208 472 2.21e-37 143
Msa1002670 AT5G05860.1 27.423 485 284 16 4 473 19 450 1.07e-36 140
Msa1002670 AT5G59590.1 25.793 473 292 15 2 463 18 442 1.36e-36 140
Msa1002670 AT3G21800.1 32.740 281 161 9 201 470 212 475 2.32e-36 140
Msa1002670 AT3G46670.1 26.151 478 284 14 2 463 17 441 3.01e-36 139
Msa1002670 AT5G66690.1 25.540 509 294 19 4 474 17 478 5.04e-36 139
Msa1002670 AT1G01390.1 26.113 494 280 18 4 463 18 460 7.23e-36 139
Msa1002670 AT1G01390.2 26.113 494 280 18 4 463 35 477 1.14e-35 139
Msa1002670 AT2G18560.1 26.396 394 245 11 88 463 3 369 1.40e-35 136
Msa1002670 AT3G46690.1 26.875 480 289 16 2 468 17 447 1.07e-34 135
Msa1002670 AT2G23250.1 26.971 482 283 18 4 470 8 435 1.33e-34 135
Msa1002670 AT5G17030.1 28.986 276 163 8 199 473 215 458 1.68e-34 135
Msa1002670 AT3G21780.1 27.577 388 231 13 108 472 110 470 3.39e-34 134
Msa1002670 AT4G15490.1 23.878 490 311 19 4 471 18 467 5.71e-34 134
Msa1002670 AT5G65550.1 25.806 403 243 9 1 381 16 384 1.63e-33 132
Msa1002670 AT4G15500.1 25.000 492 310 20 4 477 19 469 1.81e-33 132
Msa1002670 AT3G46660.1 26.273 491 289 16 2 473 22 458 1.87e-33 132
Msa1002670 AT2G31790.1 27.140 479 283 17 4 463 18 449 3.08e-33 131
Msa1002670 AT3G46680.1 25.466 483 298 16 2 473 17 448 4.84e-33 130
Msa1002670 AT5G59580.1 25.000 472 296 14 2 463 17 440 5.42e-33 130
Msa1002670 AT5G05900.1 25.410 488 285 15 4 470 18 447 2.33e-32 129
Msa1002670 AT2G23260.1 27.254 477 294 19 4 470 20 453 2.55e-32 129
Msa1002670 AT3G21750.1 24.458 507 295 15 4 472 14 470 4.75e-32 128
Msa1002670 AT4G36770.1 25.309 486 274 16 4 453 14 446 7.28e-32 127
Msa1002670 AT3G46650.1 24.573 468 287 13 2 463 18 425 1.36e-31 126
Msa1002670 AT2G22590.1 24.359 468 303 13 1 451 22 455 3.82e-31 125
Msa1002670 AT3G46700.1 25.995 377 233 11 105 470 103 444 5.64e-31 124
Msa1002670 AT1G22370.1 29.693 293 184 7 180 471 35 306 5.71e-31 122
Msa1002670 AT5G05880.1 26.763 482 287 18 4 470 18 448 1.40e-30 124
Msa1002670 AT5G05890.1 26.598 485 288 17 4 470 18 452 1.73e-30 123
Msa1002670 AT3G55700.1 26.316 494 292 19 3 477 17 457 4.83e-30 122
Msa1002670 AT5G17040.2 28.148 270 163 7 202 471 100 338 5.95e-30 120
Msa1002670 AT5G17050.1 29.643 280 154 9 199 473 218 459 6.46e-30 122
Msa1002670 AT5G38040.1 23.868 486 299 14 2 470 18 449 1.09e-29 121
Msa1002670 AT5G38010.1 25.558 493 286 19 2 470 18 453 1.29e-29 121
Msa1002670 AT5G17040.1 24.595 370 240 11 105 471 107 440 2.16e-29 120
Msa1002670 AT2G26480.1 23.800 479 304 14 4 471 18 446 2.51e-29 120
Msa1002670 AT2G15490.2 35.519 183 96 5 1 167 14 190 4.04e-28 113
Msa1002670 AT2G36970.1 23.878 490 311 18 4 470 20 470 3.55e-27 114
Msa1002670 AT2G28080.1 25.553 497 301 20 4 477 28 478 5.13e-27 114
Msa1002670 AT3G46720.1 27.078 373 222 11 105 468 107 438 6.57e-27 113
Msa1002670 AT3G55710.1 26.078 487 304 19 4 477 18 461 7.21e-27 113
Msa1002670 AT1G64910.1 24.215 446 288 13 1 437 13 417 2.31e-26 111
Msa1002670 AT1G30530.1 23.878 490 290 18 4 471 23 451 9.51e-26 109
Msa1002670 AT2G16890.4 29.747 316 183 14 1 299 16 309 6.15e-25 105
Msa1002670 AT2G16890.1 29.747 316 183 14 1 299 16 309 6.15e-25 105
Msa1002670 AT5G53990.1 24.444 450 280 14 1 441 13 411 8.12e-24 103
Msa1002670 AT4G27570.1 24.224 483 306 16 1 473 14 446 9.29e-24 103
Msa1002670 AT3G22250.1 25.397 504 272 24 2 462 16 458 2.09e-23 103
Msa1002670 AT5G54060.1 24.242 495 304 20 1 473 20 465 9.80e-23 101
Msa1002670 AT4G27560.1 24.224 483 306 17 1 473 14 446 1.52e-22 100
Msa1002670 AT3G29630.1 22.494 449 293 12 4 444 16 417 2.38e-22 99.8
Msa1002670 AT1G64920.1 23.722 489 307 20 1 475 13 449 5.64e-22 98.6
Msa1002670 AT5G37950.2 28.261 276 169 12 105 373 84 337 1.41e-20 93.2
Msa1002670 AT5G54010.1 24.658 438 280 14 4 434 16 410 1.60e-20 94.4
Msa1002670 AT2G22930.1 23.767 446 282 13 1 438 13 408 2.61e-20 93.6
Msa1002670 AT5G37950.1 27.660 282 169 12 105 373 84 343 3.48e-20 92.0
Msa1002670 AT3G29630.2 22.902 441 275 13 4 444 16 391 3.48e-19 90.1
Msa1002670 AT4G09500.2 23.884 448 279 15 1 438 13 408 1.10e-18 88.6
Msa1002670 AT1G50580.1 22.707 458 279 14 4 444 16 415 8.88e-18 85.9
Msa1002670 AT4G09500.1 23.409 440 266 12 1 438 13 383 1.72e-17 84.7
Msa1002670 AT4G01070.2 23.547 327 196 10 4 311 18 309 3.03e-13 71.2

Find 101 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTTAATGTGAATAATT+TGG 0.117677 6_4:-88487500 None:intergenic
TCCAGTTTCATTATCAAATA+AGG 0.212471 6_4:+88488043 Msa1002670:CDS
TAATTGAATTTCTCTATCTA+TGG 0.294249 6_4:-88487466 None:intergenic
TGAAGGAAAATTTATTGTTC+CGG 0.294582 6_4:+88487809 Msa1002670:CDS
AGAGGTTGGGTTGGGATTAG+AGG 0.312310 6_4:+88488220 Msa1002670:CDS
TCCTTATTTGATAATGAAAC+TGG 0.320618 6_4:-88488044 None:intergenic
GAAATTACACAACTTGGAAT+TGG 0.339102 6_4:-88487657 None:intergenic
TGTTGACACTTTACCTTCAA+TGG 0.339937 6_4:+88487560 Msa1002670:CDS
GAAGGAAAATTTATTGTTCC+GGG 0.339977 6_4:+88487810 Msa1002670:CDS
GCTCAAAGTGCTGTGCATTT+AGG 0.340363 6_4:+88488551 Msa1002670:CDS
GAGTAACTGGTTATAAAGTA+TGG 0.342899 6_4:+88488012 Msa1002670:CDS
ATGAAGAAAAGGAAAAGATT+AGG 0.360196 6_4:+88488648 Msa1002670:CDS
GAAGAGTATAAAAGAGTAAC+TGG 0.360566 6_4:+88487999 Msa1002670:CDS
TGAAGAAAAGGAAAAGATTA+GGG 0.371117 6_4:+88488649 Msa1002670:CDS
TCAATTTGATCGGGCATTCC+CGG 0.376428 6_4:-88487828 None:intergenic
TTGCGAAAATGTCAACTTCC+AGG 0.378836 6_4:+88487852 Msa1002670:CDS
TTTAATAATATTCCTAATGA+AGG 0.383326 6_4:+88487792 Msa1002670:CDS
TGCATATGGAAGAGAGGAAA+TGG 0.391099 6_4:+88488277 Msa1002670:CDS
ATAGATAGAGAAATTCAATT+AGG 0.405701 6_4:+88487468 Msa1002670:CDS
ATTAGCACGTCGCAAAGTTA+AGG 0.411952 6_4:+88487398 Msa1002670:CDS
CAATTGAAAGAGGTTGGGTT+GGG 0.416863 6_4:+88488212 Msa1002670:CDS
CTTCCAGGGTTATTTAATCC+AGG 0.435832 6_4:+88487867 Msa1002670:CDS
TTATCTGAAATTACACAACT+TGG 0.438024 6_4:-88487663 None:intergenic
CATTGGAAGGGATTTCTTGT+GGG 0.440305 6_4:+88488438 Msa1002670:CDS
ATACTATCACACAAAGCAAT+AGG 0.441436 6_4:+88488383 Msa1002670:CDS
GAAGGAAGGGTGAAGAATAG+AGG 0.446445 6_4:+88488326 Msa1002670:CDS
GAGAAATGGTTATATGAAGA+AGG 0.449752 6_4:+88488299 Msa1002670:CDS
TTGGACATTAAATCCATTGA+AGG 0.456900 6_4:-88487573 None:intergenic
GTCCCGTCGAATATAATTCT+CGG 0.460820 6_4:-88487729 None:intergenic
ATGAAGAAGGGTTTGAAGGA+AGG 0.463468 6_4:+88488312 Msa1002670:CDS
GATGCTATTGAGAAGGTAAT+GGG 0.465667 6_4:+88488620 Msa1002670:CDS
CCTCAACAATTGAAAGAGGT+TGG 0.469473 6_4:+88488206 Msa1002670:CDS
TTTCGCAACTCAATTTGATC+GGG 0.472688 6_4:-88487837 None:intergenic
TCAACACTTTCACATCCCTC+TGG 0.473790 6_4:-88487543 None:intergenic
AACTTTGCCATGTCTACCAT+TGG 0.474256 6_4:-88487375 None:intergenic
AGATGCTATTGAGAAGGTAA+TGG 0.474911 6_4:+88488619 Msa1002670:CDS
CTCAACAATTGAAAGAGGTT+GGG 0.475910 6_4:+88488207 Msa1002670:CDS
AGTTAGATAAATTTGAAAGA+GGG 0.477235 6_4:+88488069 Msa1002670:CDS
TGGGATTAGAGGAAACAAAA+AGG 0.479739 6_4:+88488231 Msa1002670:CDS
TGAAGAAGGGTTTGAAGGAA+GGG 0.480479 6_4:+88488313 Msa1002670:CDS
GAAGAGAGGAAATGGAGAAA+TGG 0.481479 6_4:+88488285 Msa1002670:CDS
TCTGTTATTTATGTTTGTCT+TGG 0.484200 6_4:+88488164 Msa1002670:CDS
TTGAATTTCTCTATCTATGG+TGG 0.486239 6_4:-88487463 None:intergenic
CCTCTCAACACCCAAATGAA+TGG 0.488777 6_4:-88488254 None:intergenic
AAATTTCCAAGTGTAGAGTC+TGG 0.489017 6_4:+88487516 Msa1002670:CDS
TTCTCAAGTGGCTTGAATTG+TGG 0.494280 6_4:+88488132 Msa1002670:CDS
TTATATGAAGAAGGGTTTGA+AGG 0.495951 6_4:+88488308 Msa1002670:CDS
TTCCGAGAATTATATTCGAC+GGG 0.499717 6_4:+88487727 Msa1002670:CDS
AATGGGTGAGGATGAAGAAA+AGG 0.501088 6_4:+88488637 Msa1002670:CDS
ACATTGGAAGGGATTTCTTG+TGG 0.509026 6_4:+88488437 Msa1002670:CDS
CCAACCTCTTTCAATTGTTG+AGG 0.511503 6_4:-88488206 None:intergenic
TTGTACTTTAGCTTTGTCCT+TGG 0.513746 6_4:-88488772 None:intergenic
TTCCAGGGTTATTTAATCCA+GGG 0.514909 6_4:+88487868 Msa1002670:CDS
GAGTTAGATAAATTTGAAAG+AGG 0.515198 6_4:+88488068 Msa1002670:CDS
ACCTGGTCATCTTCTTCCAA+TGG 0.515469 6_4:+88487359 Msa1002670:CDS
GAGAGGTGCATATGGAAGAG+AGG 0.519682 6_4:+88488271 Msa1002670:CDS
ACAATTGAAAGAGGTTGGGT+TGG 0.519761 6_4:+88488211 Msa1002670:CDS
AACATAGGAAATGTTACTAA+AGG 0.523600 6_4:-88488464 None:intergenic
GAAAATATGCTGACATGGCA+AGG 0.525519 6_4:+88488681 Msa1002670:CDS
TGGGTGTTGAGAGGTGCATA+TGG 0.525587 6_4:+88488263 Msa1002670:CDS
AGAAATGGTTATATGAAGAA+GGG 0.526730 6_4:+88488300 Msa1002670:CDS
CAACACTTTCACATCCCTCT+GGG 0.526918 6_4:-88487542 None:intergenic
GGATGGAATTCAACATTGGA+AGG 0.530413 6_4:+88488425 Msa1002670:CDS
CCATTCATTTGGGTGTTGAG+AGG 0.531082 6_4:+88488254 Msa1002670:CDS
AAAATATTCTTATGGTGTAG+TGG 0.531745 6_4:+88487941 Msa1002670:CDS
ATTGAAATCGAATGGAATTG+AGG 0.533099 6_4:-88487440 None:intergenic
TTGAAATCGAATGGAATTGA+GGG 0.539865 6_4:-88487439 None:intergenic
TCAATTGTTGAGGTGTTGCA+CGG 0.547032 6_4:-88488196 None:intergenic
TAAAACTGCTCAGCAAACAT+AGG 0.548678 6_4:-88488479 None:intergenic
ACATAAATAACAGAATTTGA+AGG 0.550993 6_4:-88488155 None:intergenic
TCCAGGGTTATTTAATCCAG+GGG 0.558050 6_4:+88487869 Msa1002670:CDS
TCCCCTGGATTAAATAACCC+TGG 0.558176 6_4:-88487870 None:intergenic
TATGGTGGATTGAAATCGAA+TGG 0.562074 6_4:-88487448 None:intergenic
AACACCTCAACAATTGAAAG+AGG 0.567338 6_4:+88488202 Msa1002670:CDS
ATTGGAAGGGATTTCTTGTG+GGG 0.568014 6_4:+88488439 Msa1002670:CDS
TGCGAAAATGTCAACTTCCA+GGG 0.572809 6_4:+88487853 Msa1002670:CDS
TTCATCCCCTTAATGGCACC+TGG 0.573392 6_4:+88487342 None:intergenic
TGTTAGAGATGCTATTGAGA+AGG 0.573533 6_4:+88488613 Msa1002670:CDS
GTTCCGAGAATTATATTCGA+CGG 0.581011 6_4:+88487726 Msa1002670:CDS
GGGATTCCAGACTCTACACT+TGG 0.583047 6_4:-88487522 None:intergenic
GTGGTGCAAGTTGTGAAGAA+TGG 0.583841 6_4:+88488515 Msa1002670:CDS
ACCATTGGAAGAAGATGACC+AGG 0.585589 6_4:-88487360 None:intergenic
AGCTAGAAAATATGCTGACA+TGG 0.587356 6_4:+88488676 Msa1002670:CDS
TCGAATGGAATTGAGGGGTG+TGG 0.587585 6_4:-88487433 None:intergenic
TATTGAGAAGGTAATGGGTG+AGG 0.599030 6_4:+88488625 Msa1002670:CDS
GCAAGGAAAGCAATAGAAGA+AGG 0.599917 6_4:+88488698 Msa1002670:CDS
GGTTATAAAGTATGGTGTGT+TGG 0.602415 6_4:+88488020 Msa1002670:CDS
TGTGAAGAATGGTGTAAGTG+TGG 0.608769 6_4:+88488526 Msa1002670:CDS
GATGGAATTCAACATTGGAA+GGG 0.609464 6_4:+88488426 Msa1002670:CDS
AATATGATAAAATTCTCAAG+TGG 0.617092 6_4:+88488120 Msa1002670:CDS
TTGTGGATGGAATTCAACAT+TGG 0.619014 6_4:+88488421 Msa1002670:CDS
TCTTCTTCCAATGGTAGACA+TGG 0.623180 6_4:+88487368 Msa1002670:CDS
CAATTAGTAGAGTCATGTTG+CGG 0.638293 6_4:-88488733 None:intergenic
AAGTGCTGTGCATTTAGGAG+AGG 0.645377 6_4:+88488556 Msa1002670:CDS
TGTGATAGTATCAACACTTG+TGG 0.647114 6_4:-88488371 None:intergenic
GAAGATATAATAGATCTCCA+AGG 0.653989 6_4:+88488755 Msa1002670:CDS
GTGAAGAATGGTGTAAGTGT+GGG 0.654875 6_4:+88488527 Msa1002670:CDS
GTAGAGTCTGGAATCCCAGA+GGG 0.665040 6_4:+88487528 Msa1002670:CDS
TGAAATCGAATGGAATTGAG+GGG 0.680004 6_4:-88487438 None:intergenic
AGGAAAGCAATAGAAGAAGG+TGG 0.700077 6_4:+88488701 Msa1002670:CDS
TGTAGAGTCTGGAATCCCAG+AGG 0.756475 6_4:+88487527 Msa1002670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATTTAATGTGAATAATT+TGG - chr6_4:88487503-88487522 None:intergenic 15.0%
!! TTTAATAATATTCCTAATGA+AGG + chr6_4:88487792-88487811 Msa1002670:CDS 15.0%
!! ATAGAAGAAAAATATTCTTA+TGG + chr6_4:88487933-88487952 Msa1002670:CDS 15.0%
!! GAAATTTAATGTGAATAATT+TGG - chr6_4:88487503-88487522 None:intergenic 15.0%
!! TTTAATAATATTCCTAATGA+AGG + chr6_4:88487792-88487811 Msa1002670:CDS 15.0%
!! ATAGAAGAAAAATATTCTTA+TGG + chr6_4:88487933-88487952 Msa1002670:CDS 15.0%
!! TAATTGAATTTCTCTATCTA+TGG - chr6_4:88487469-88487488 None:intergenic 20.0%
!! ATAGATAGAGAAATTCAATT+AGG + chr6_4:88487468-88487487 Msa1002670:CDS 20.0%
!!! AAAATGTTTTTGAAAAGCTA+AGG + chr6_4:88487634-88487653 Msa1002670:CDS 20.0%
!!! ACAATAAATTTTCCTTCATT+AGG - chr6_4:88487807-88487826 None:intergenic 20.0%
!! AGTTAGATAAATTTGAAAGA+GGG + chr6_4:88488069-88488088 Msa1002670:CDS 20.0%
!! AATATGATAAAATTCTCAAG+TGG + chr6_4:88488120-88488139 Msa1002670:CDS 20.0%
!! ACATAAATAACAGAATTTGA+AGG - chr6_4:88488158-88488177 None:intergenic 20.0%
!!! AATAGAGGTTTTTTGATAAA+GGG + chr6_4:88488341-88488360 Msa1002670:CDS 20.0%
!! TAATTGAATTTCTCTATCTA+TGG - chr6_4:88487469-88487488 None:intergenic 20.0%
!! ATAGATAGAGAAATTCAATT+AGG + chr6_4:88487468-88487487 Msa1002670:CDS 20.0%
!!! AAAATGTTTTTGAAAAGCTA+AGG + chr6_4:88487634-88487653 Msa1002670:CDS 20.0%
!!! ACAATAAATTTTCCTTCATT+AGG - chr6_4:88487807-88487826 None:intergenic 20.0%
!! AGTTAGATAAATTTGAAAGA+GGG + chr6_4:88488069-88488088 Msa1002670:CDS 20.0%
!! AATATGATAAAATTCTCAAG+TGG + chr6_4:88488120-88488139 Msa1002670:CDS 20.0%
!! ACATAAATAACAGAATTTGA+AGG - chr6_4:88488158-88488177 None:intergenic 20.0%
!!! AATAGAGGTTTTTTGATAAA+GGG + chr6_4:88488341-88488360 Msa1002670:CDS 20.0%
! GCATAAAGCTATGTAAAAAT+TGG - chr6_4:88487595-88487614 None:intergenic 25.0%
!! TTATCTGAAATTACACAACT+TGG - chr6_4:88487666-88487685 None:intergenic 25.0%
! TGAAGGAAAATTTATTGTTC+CGG + chr6_4:88487809-88487828 Msa1002670:CDS 25.0%
!!! TTTAATTTTTTGTTTTCCCC+TGG - chr6_4:88487888-88487907 None:intergenic 25.0%
! GGGGAAAACAAAAAATTAAA+TGG + chr6_4:88487888-88487907 Msa1002670:CDS 25.0%
! AAAATATTCTTATGGTGTAG+TGG + chr6_4:88487941-88487960 Msa1002670:CDS 25.0%
!!! GGTTAATAGTTTTGAAGAAT+TGG + chr6_4:88487962-88487981 Msa1002670:CDS 25.0%
! TCCAGTTTCATTATCAAATA+AGG + chr6_4:88488043-88488062 Msa1002670:CDS 25.0%
!!! TCCTTATTTGATAATGAAAC+TGG - chr6_4:88488047-88488066 None:intergenic 25.0%
! GAGTTAGATAAATTTGAAAG+AGG + chr6_4:88488068-88488087 Msa1002670:CDS 25.0%
!! TCTGTTATTTATGTTTGTCT+TGG + chr6_4:88488164-88488183 Msa1002670:CDS 25.0%
! AGAAATGGTTATATGAAGAA+GGG + chr6_4:88488300-88488319 Msa1002670:CDS 25.0%
!!! GAATAGAGGTTTTTTGATAA+AGG + chr6_4:88488340-88488359 Msa1002670:CDS 25.0%
! AACATAGGAAATGTTACTAA+AGG - chr6_4:88488467-88488486 None:intergenic 25.0%
!! GTTTTATAATGAGAAAGTTG+TGG + chr6_4:88488496-88488515 Msa1002670:CDS 25.0%
! ATGAAGAAAAGGAAAAGATT+AGG + chr6_4:88488648-88488667 Msa1002670:CDS 25.0%
! TGAAGAAAAGGAAAAGATTA+GGG + chr6_4:88488649-88488668 Msa1002670:CDS 25.0%
! GCATAAAGCTATGTAAAAAT+TGG - chr6_4:88487595-88487614 None:intergenic 25.0%
!! TTATCTGAAATTACACAACT+TGG - chr6_4:88487666-88487685 None:intergenic 25.0%
! TGAAGGAAAATTTATTGTTC+CGG + chr6_4:88487809-88487828 Msa1002670:CDS 25.0%
!!! TTTAATTTTTTGTTTTCCCC+TGG - chr6_4:88487888-88487907 None:intergenic 25.0%
! GGGGAAAACAAAAAATTAAA+TGG + chr6_4:88487888-88487907 Msa1002670:CDS 25.0%
! AAAATATTCTTATGGTGTAG+TGG + chr6_4:88487941-88487960 Msa1002670:CDS 25.0%
!!! GGTTAATAGTTTTGAAGAAT+TGG + chr6_4:88487962-88487981 Msa1002670:CDS 25.0%
! TCCAGTTTCATTATCAAATA+AGG + chr6_4:88488043-88488062 Msa1002670:CDS 25.0%
!!! TCCTTATTTGATAATGAAAC+TGG - chr6_4:88488047-88488066 None:intergenic 25.0%
! GAGTTAGATAAATTTGAAAG+AGG + chr6_4:88488068-88488087 Msa1002670:CDS 25.0%
!! TCTGTTATTTATGTTTGTCT+TGG + chr6_4:88488164-88488183 Msa1002670:CDS 25.0%
! AGAAATGGTTATATGAAGAA+GGG + chr6_4:88488300-88488319 Msa1002670:CDS 25.0%
!!! GAATAGAGGTTTTTTGATAA+AGG + chr6_4:88488340-88488359 Msa1002670:CDS 25.0%
! AACATAGGAAATGTTACTAA+AGG - chr6_4:88488467-88488486 None:intergenic 25.0%
!! GTTTTATAATGAGAAAGTTG+TGG + chr6_4:88488496-88488515 Msa1002670:CDS 25.0%
! ATGAAGAAAAGGAAAAGATT+AGG + chr6_4:88488648-88488667 Msa1002670:CDS 25.0%
! TGAAGAAAAGGAAAAGATTA+GGG + chr6_4:88488649-88488668 Msa1002670:CDS 25.0%
TTGAAATCGAATGGAATTGA+GGG - chr6_4:88487442-88487461 None:intergenic 30.0%
ATTGAAATCGAATGGAATTG+AGG - chr6_4:88487443-88487462 None:intergenic 30.0%
TTGAATTTCTCTATCTATGG+TGG - chr6_4:88487466-88487485 None:intergenic 30.0%
TTGGACATTAAATCCATTGA+AGG - chr6_4:88487576-88487595 None:intergenic 30.0%
GAAATTACACAACTTGGAAT+TGG - chr6_4:88487660-88487679 None:intergenic 30.0%
GAAGGAAAATTTATTGTTCC+GGG + chr6_4:88487810-88487829 Msa1002670:CDS 30.0%
! TTTTCGCAACTCAATTTGAT+CGG - chr6_4:88487841-88487860 None:intergenic 30.0%
! GAAGAGTATAAAAGAGTAAC+TGG + chr6_4:88487999-88488018 Msa1002670:CDS 30.0%
GAGTAACTGGTTATAAAGTA+TGG + chr6_4:88488012-88488031 Msa1002670:CDS 30.0%
AAACAAAAAGGCCATTCATT+TGG + chr6_4:88488243-88488262 Msa1002670:CDS 30.0%
AACAAAAAGGCCATTCATTT+GGG + chr6_4:88488244-88488263 Msa1002670:CDS 30.0%
GAGAAATGGTTATATGAAGA+AGG + chr6_4:88488299-88488318 Msa1002670:CDS 30.0%
TTATATGAAGAAGGGTTTGA+AGG + chr6_4:88488308-88488327 Msa1002670:CDS 30.0%
!!! AGGTTTTTTGATAAAGGGTT+GGG + chr6_4:88488346-88488365 Msa1002670:CDS 30.0%
ATACTATCACACAAAGCAAT+AGG + chr6_4:88488383-88488402 Msa1002670:CDS 30.0%
!!! TTTTTTTGACACATTGTGGA+TGG + chr6_4:88488408-88488427 Msa1002670:CDS 30.0%
GAAGATATAATAGATCTCCA+AGG + chr6_4:88488755-88488774 Msa1002670:CDS 30.0%
TTGAAATCGAATGGAATTGA+GGG - chr6_4:88487442-88487461 None:intergenic 30.0%
ATTGAAATCGAATGGAATTG+AGG - chr6_4:88487443-88487462 None:intergenic 30.0%
TTGAATTTCTCTATCTATGG+TGG - chr6_4:88487466-88487485 None:intergenic 30.0%
TTGGACATTAAATCCATTGA+AGG - chr6_4:88487576-88487595 None:intergenic 30.0%
GAAATTACACAACTTGGAAT+TGG - chr6_4:88487660-88487679 None:intergenic 30.0%
GAAGGAAAATTTATTGTTCC+GGG + chr6_4:88487810-88487829 Msa1002670:CDS 30.0%
! TTTTCGCAACTCAATTTGAT+CGG - chr6_4:88487841-88487860 None:intergenic 30.0%
! GAAGAGTATAAAAGAGTAAC+TGG + chr6_4:88487999-88488018 Msa1002670:CDS 30.0%
GAGTAACTGGTTATAAAGTA+TGG + chr6_4:88488012-88488031 Msa1002670:CDS 30.0%
AAACAAAAAGGCCATTCATT+TGG + chr6_4:88488243-88488262 Msa1002670:CDS 30.0%
AACAAAAAGGCCATTCATTT+GGG + chr6_4:88488244-88488263 Msa1002670:CDS 30.0%
GAGAAATGGTTATATGAAGA+AGG + chr6_4:88488299-88488318 Msa1002670:CDS 30.0%
TTATATGAAGAAGGGTTTGA+AGG + chr6_4:88488308-88488327 Msa1002670:CDS 30.0%
!!! AGGTTTTTTGATAAAGGGTT+GGG + chr6_4:88488346-88488365 Msa1002670:CDS 30.0%
ATACTATCACACAAAGCAAT+AGG + chr6_4:88488383-88488402 Msa1002670:CDS 30.0%
!!! TTTTTTTGACACATTGTGGA+TGG + chr6_4:88488408-88488427 Msa1002670:CDS 30.0%
GAAGATATAATAGATCTCCA+AGG + chr6_4:88488755-88488774 Msa1002670:CDS 30.0%
TGAAATCGAATGGAATTGAG+GGG - chr6_4:88487441-88487460 None:intergenic 35.0%
!! TATGGTGGATTGAAATCGAA+TGG - chr6_4:88487451-88487470 None:intergenic 35.0%
AAATTTCCAAGTGTAGAGTC+TGG + chr6_4:88487516-88487535 Msa1002670:CDS 35.0%
TGTTGACACTTTACCTTCAA+TGG + chr6_4:88487560-88487579 Msa1002670:CDS 35.0%
GTTCCGAGAATTATATTCGA+CGG + chr6_4:88487726-88487745 Msa1002670:CDS 35.0%
TTCCGAGAATTATATTCGAC+GGG + chr6_4:88487727-88487746 Msa1002670:CDS 35.0%
TTTCGCAACTCAATTTGATC+GGG - chr6_4:88487840-88487859 None:intergenic 35.0%
TTCCAGGGTTATTTAATCCA+GGG + chr6_4:88487868-88487887 Msa1002670:CDS 35.0%
! ATGGTTTTCGCGAAGAAATA+AGG + chr6_4:88487907-88487926 Msa1002670:CDS 35.0%
! TGGTTTTCGCGAAGAAATAA+GGG + chr6_4:88487908-88487927 Msa1002670:CDS 35.0%
GGTTATAAAGTATGGTGTGT+TGG + chr6_4:88488020-88488039 Msa1002670:CDS 35.0%
AACACCTCAACAATTGAAAG+AGG + chr6_4:88488202-88488221 Msa1002670:CDS 35.0%
CTCAACAATTGAAAGAGGTT+GGG + chr6_4:88488207-88488226 Msa1002670:CDS 35.0%
TGGGATTAGAGGAAACAAAA+AGG + chr6_4:88488231-88488250 Msa1002670:CDS 35.0%
!!! GAGGTTTTTTGATAAAGGGT+TGG + chr6_4:88488345-88488364 Msa1002670:CDS 35.0%
TGTGATAGTATCAACACTTG+TGG - chr6_4:88488374-88488393 None:intergenic 35.0%
!!! GGTGTTTTTTTGACACATTG+TGG + chr6_4:88488404-88488423 Msa1002670:CDS 35.0%
TTGTGGATGGAATTCAACAT+TGG + chr6_4:88488421-88488440 Msa1002670:CDS 35.0%
GATGGAATTCAACATTGGAA+GGG + chr6_4:88488426-88488445 Msa1002670:CDS 35.0%
TAAAACTGCTCAGCAAACAT+AGG - chr6_4:88488482-88488501 None:intergenic 35.0%
TGTTAGAGATGCTATTGAGA+AGG + chr6_4:88488613-88488632 Msa1002670:CDS 35.0%
AGATGCTATTGAGAAGGTAA+TGG + chr6_4:88488619-88488638 Msa1002670:CDS 35.0%
GATGCTATTGAGAAGGTAAT+GGG + chr6_4:88488620-88488639 Msa1002670:CDS 35.0%
AGCTAGAAAATATGCTGACA+TGG + chr6_4:88488676-88488695 Msa1002670:CDS 35.0%
CAATTAGTAGAGTCATGTTG+CGG - chr6_4:88488736-88488755 None:intergenic 35.0%
TGAAATCGAATGGAATTGAG+GGG - chr6_4:88487441-88487460 None:intergenic 35.0%
!! TATGGTGGATTGAAATCGAA+TGG - chr6_4:88487451-88487470 None:intergenic 35.0%
AAATTTCCAAGTGTAGAGTC+TGG + chr6_4:88487516-88487535 Msa1002670:CDS 35.0%
TGTTGACACTTTACCTTCAA+TGG + chr6_4:88487560-88487579 Msa1002670:CDS 35.0%
GTTCCGAGAATTATATTCGA+CGG + chr6_4:88487726-88487745 Msa1002670:CDS 35.0%
TTCCGAGAATTATATTCGAC+GGG + chr6_4:88487727-88487746 Msa1002670:CDS 35.0%
TTTCGCAACTCAATTTGATC+GGG - chr6_4:88487840-88487859 None:intergenic 35.0%
TTCCAGGGTTATTTAATCCA+GGG + chr6_4:88487868-88487887 Msa1002670:CDS 35.0%
! ATGGTTTTCGCGAAGAAATA+AGG + chr6_4:88487907-88487926 Msa1002670:CDS 35.0%
! TGGTTTTCGCGAAGAAATAA+GGG + chr6_4:88487908-88487927 Msa1002670:CDS 35.0%
GGTTATAAAGTATGGTGTGT+TGG + chr6_4:88488020-88488039 Msa1002670:CDS 35.0%
AACACCTCAACAATTGAAAG+AGG + chr6_4:88488202-88488221 Msa1002670:CDS 35.0%
CTCAACAATTGAAAGAGGTT+GGG + chr6_4:88488207-88488226 Msa1002670:CDS 35.0%
TGGGATTAGAGGAAACAAAA+AGG + chr6_4:88488231-88488250 Msa1002670:CDS 35.0%
!!! GAGGTTTTTTGATAAAGGGT+TGG + chr6_4:88488345-88488364 Msa1002670:CDS 35.0%
TGTGATAGTATCAACACTTG+TGG - chr6_4:88488374-88488393 None:intergenic 35.0%
!!! GGTGTTTTTTTGACACATTG+TGG + chr6_4:88488404-88488423 Msa1002670:CDS 35.0%
TTGTGGATGGAATTCAACAT+TGG + chr6_4:88488421-88488440 Msa1002670:CDS 35.0%
GATGGAATTCAACATTGGAA+GGG + chr6_4:88488426-88488445 Msa1002670:CDS 35.0%
TAAAACTGCTCAGCAAACAT+AGG - chr6_4:88488482-88488501 None:intergenic 35.0%
TGTTAGAGATGCTATTGAGA+AGG + chr6_4:88488613-88488632 Msa1002670:CDS 35.0%
AGATGCTATTGAGAAGGTAA+TGG + chr6_4:88488619-88488638 Msa1002670:CDS 35.0%
GATGCTATTGAGAAGGTAAT+GGG + chr6_4:88488620-88488639 Msa1002670:CDS 35.0%
AGCTAGAAAATATGCTGACA+TGG + chr6_4:88488676-88488695 Msa1002670:CDS 35.0%
CAATTAGTAGAGTCATGTTG+CGG - chr6_4:88488736-88488755 None:intergenic 35.0%
TCTTCTTCCAATGGTAGACA+TGG + chr6_4:88487368-88487387 Msa1002670:CDS 40.0%
AACTTTGCCATGTCTACCAT+TGG - chr6_4:88487378-88487397 None:intergenic 40.0%
ATTAGCACGTCGCAAAGTTA+AGG + chr6_4:88487398-88487417 Msa1002670:CDS 40.0%
GTCCCGTCGAATATAATTCT+CGG - chr6_4:88487732-88487751 None:intergenic 40.0%
TTGCGAAAATGTCAACTTCC+AGG + chr6_4:88487852-88487871 Msa1002670:CDS 40.0%
TGCGAAAATGTCAACTTCCA+GGG + chr6_4:88487853-88487872 Msa1002670:CDS 40.0%
CTTCCAGGGTTATTTAATCC+AGG + chr6_4:88487867-88487886 Msa1002670:CDS 40.0%
TCCAGGGTTATTTAATCCAG+GGG + chr6_4:88487869-88487888 Msa1002670:CDS 40.0%
TTCTCAAGTGGCTTGAATTG+TGG + chr6_4:88488132-88488151 Msa1002670:CDS 40.0%
!! TCAATTGTTGAGGTGTTGCA+CGG - chr6_4:88488199-88488218 None:intergenic 40.0%
CCAACCTCTTTCAATTGTTG+AGG - chr6_4:88488209-88488228 None:intergenic 40.0%
CCTCAACAATTGAAAGAGGT+TGG + chr6_4:88488206-88488225 Msa1002670:CDS 40.0%
ACAATTGAAAGAGGTTGGGT+TGG + chr6_4:88488211-88488230 Msa1002670:CDS 40.0%
CAATTGAAAGAGGTTGGGTT+GGG + chr6_4:88488212-88488231 Msa1002670:CDS 40.0%
TGCATATGGAAGAGAGGAAA+TGG + chr6_4:88488277-88488296 Msa1002670:CDS 40.0%
GAAGAGAGGAAATGGAGAAA+TGG + chr6_4:88488285-88488304 Msa1002670:CDS 40.0%
ATGAAGAAGGGTTTGAAGGA+AGG + chr6_4:88488312-88488331 Msa1002670:CDS 40.0%
TGAAGAAGGGTTTGAAGGAA+GGG + chr6_4:88488313-88488332 Msa1002670:CDS 40.0%
GGATGGAATTCAACATTGGA+AGG + chr6_4:88488425-88488444 Msa1002670:CDS 40.0%
ACATTGGAAGGGATTTCTTG+TGG + chr6_4:88488437-88488456 Msa1002670:CDS 40.0%
CATTGGAAGGGATTTCTTGT+GGG + chr6_4:88488438-88488457 Msa1002670:CDS 40.0%
ATTGGAAGGGATTTCTTGTG+GGG + chr6_4:88488439-88488458 Msa1002670:CDS 40.0%
TGTGAAGAATGGTGTAAGTG+TGG + chr6_4:88488526-88488545 Msa1002670:CDS 40.0%
GTGAAGAATGGTGTAAGTGT+GGG + chr6_4:88488527-88488546 Msa1002670:CDS 40.0%
!! TATTGAGAAGGTAATGGGTG+AGG + chr6_4:88488625-88488644 Msa1002670:CDS 40.0%
AATGGGTGAGGATGAAGAAA+AGG + chr6_4:88488637-88488656 Msa1002670:CDS 40.0%
GAAAATATGCTGACATGGCA+AGG + chr6_4:88488681-88488700 Msa1002670:CDS 40.0%
GCAAGGAAAGCAATAGAAGA+AGG + chr6_4:88488698-88488717 Msa1002670:CDS 40.0%
AGGAAAGCAATAGAAGAAGG+TGG + chr6_4:88488701-88488720 Msa1002670:CDS 40.0%
TCTTCTTCCAATGGTAGACA+TGG + chr6_4:88487368-88487387 Msa1002670:CDS 40.0%
AACTTTGCCATGTCTACCAT+TGG - chr6_4:88487378-88487397 None:intergenic 40.0%
ATTAGCACGTCGCAAAGTTA+AGG + chr6_4:88487398-88487417 Msa1002670:CDS 40.0%
GTCCCGTCGAATATAATTCT+CGG - chr6_4:88487732-88487751 None:intergenic 40.0%
TTGCGAAAATGTCAACTTCC+AGG + chr6_4:88487852-88487871 Msa1002670:CDS 40.0%
TGCGAAAATGTCAACTTCCA+GGG + chr6_4:88487853-88487872 Msa1002670:CDS 40.0%
CTTCCAGGGTTATTTAATCC+AGG + chr6_4:88487867-88487886 Msa1002670:CDS 40.0%
TCCAGGGTTATTTAATCCAG+GGG + chr6_4:88487869-88487888 Msa1002670:CDS 40.0%
TTCTCAAGTGGCTTGAATTG+TGG + chr6_4:88488132-88488151 Msa1002670:CDS 40.0%
!! TCAATTGTTGAGGTGTTGCA+CGG - chr6_4:88488199-88488218 None:intergenic 40.0%
CCAACCTCTTTCAATTGTTG+AGG - chr6_4:88488209-88488228 None:intergenic 40.0%
CCTCAACAATTGAAAGAGGT+TGG + chr6_4:88488206-88488225 Msa1002670:CDS 40.0%
ACAATTGAAAGAGGTTGGGT+TGG + chr6_4:88488211-88488230 Msa1002670:CDS 40.0%
CAATTGAAAGAGGTTGGGTT+GGG + chr6_4:88488212-88488231 Msa1002670:CDS 40.0%
TGCATATGGAAGAGAGGAAA+TGG + chr6_4:88488277-88488296 Msa1002670:CDS 40.0%
GAAGAGAGGAAATGGAGAAA+TGG + chr6_4:88488285-88488304 Msa1002670:CDS 40.0%
ATGAAGAAGGGTTTGAAGGA+AGG + chr6_4:88488312-88488331 Msa1002670:CDS 40.0%
TGAAGAAGGGTTTGAAGGAA+GGG + chr6_4:88488313-88488332 Msa1002670:CDS 40.0%
GGATGGAATTCAACATTGGA+AGG + chr6_4:88488425-88488444 Msa1002670:CDS 40.0%
ACATTGGAAGGGATTTCTTG+TGG + chr6_4:88488437-88488456 Msa1002670:CDS 40.0%
CATTGGAAGGGATTTCTTGT+GGG + chr6_4:88488438-88488457 Msa1002670:CDS 40.0%
ATTGGAAGGGATTTCTTGTG+GGG + chr6_4:88488439-88488458 Msa1002670:CDS 40.0%
TGTGAAGAATGGTGTAAGTG+TGG + chr6_4:88488526-88488545 Msa1002670:CDS 40.0%
GTGAAGAATGGTGTAAGTGT+GGG + chr6_4:88488527-88488546 Msa1002670:CDS 40.0%
!! TATTGAGAAGGTAATGGGTG+AGG + chr6_4:88488625-88488644 Msa1002670:CDS 40.0%
AATGGGTGAGGATGAAGAAA+AGG + chr6_4:88488637-88488656 Msa1002670:CDS 40.0%
GAAAATATGCTGACATGGCA+AGG + chr6_4:88488681-88488700 Msa1002670:CDS 40.0%
GCAAGGAAAGCAATAGAAGA+AGG + chr6_4:88488698-88488717 Msa1002670:CDS 40.0%
AGGAAAGCAATAGAAGAAGG+TGG + chr6_4:88488701-88488720 Msa1002670:CDS 40.0%
ACCTGGTCATCTTCTTCCAA+TGG + chr6_4:88487359-88487378 Msa1002670:CDS 45.0%
ACCATTGGAAGAAGATGACC+AGG - chr6_4:88487363-88487382 None:intergenic 45.0%
CAACACTTTCACATCCCTCT+GGG - chr6_4:88487545-88487564 None:intergenic 45.0%
TCAACACTTTCACATCCCTC+TGG - chr6_4:88487546-88487565 None:intergenic 45.0%
TCAATTTGATCGGGCATTCC+CGG - chr6_4:88487831-88487850 None:intergenic 45.0%
TCCCCTGGATTAAATAACCC+TGG - chr6_4:88487873-88487892 None:intergenic 45.0%
CCTCTCAACACCCAAATGAA+TGG - chr6_4:88488257-88488276 None:intergenic 45.0%
!! CCATTCATTTGGGTGTTGAG+AGG + chr6_4:88488254-88488273 Msa1002670:CDS 45.0%
GAAGGAAGGGTGAAGAATAG+AGG + chr6_4:88488326-88488345 Msa1002670:CDS 45.0%
GTGGTGCAAGTTGTGAAGAA+TGG + chr6_4:88488515-88488534 Msa1002670:CDS 45.0%
!! GCTCAAAGTGCTGTGCATTT+AGG + chr6_4:88488551-88488570 Msa1002670:CDS 45.0%
! AAGTGCTGTGCATTTAGGAG+AGG + chr6_4:88488556-88488575 Msa1002670:CDS 45.0%
ACCTGGTCATCTTCTTCCAA+TGG + chr6_4:88487359-88487378 Msa1002670:CDS 45.0%
ACCATTGGAAGAAGATGACC+AGG - chr6_4:88487363-88487382 None:intergenic 45.0%
CAACACTTTCACATCCCTCT+GGG - chr6_4:88487545-88487564 None:intergenic 45.0%
TCAACACTTTCACATCCCTC+TGG - chr6_4:88487546-88487565 None:intergenic 45.0%
TCAATTTGATCGGGCATTCC+CGG - chr6_4:88487831-88487850 None:intergenic 45.0%
TCCCCTGGATTAAATAACCC+TGG - chr6_4:88487873-88487892 None:intergenic 45.0%
CCTCTCAACACCCAAATGAA+TGG - chr6_4:88488257-88488276 None:intergenic 45.0%
!! CCATTCATTTGGGTGTTGAG+AGG + chr6_4:88488254-88488273 Msa1002670:CDS 45.0%
GAAGGAAGGGTGAAGAATAG+AGG + chr6_4:88488326-88488345 Msa1002670:CDS 45.0%
GTGGTGCAAGTTGTGAAGAA+TGG + chr6_4:88488515-88488534 Msa1002670:CDS 45.0%
!! GCTCAAAGTGCTGTGCATTT+AGG + chr6_4:88488551-88488570 Msa1002670:CDS 45.0%
! AAGTGCTGTGCATTTAGGAG+AGG + chr6_4:88488556-88488575 Msa1002670:CDS 45.0%
TCGAATGGAATTGAGGGGTG+TGG - chr6_4:88487436-88487455 None:intergenic 50.0%
GGGATTCCAGACTCTACACT+TGG - chr6_4:88487525-88487544 None:intergenic 50.0%
! TGTAGAGTCTGGAATCCCAG+AGG + chr6_4:88487527-88487546 Msa1002670:CDS 50.0%
! GTAGAGTCTGGAATCCCAGA+GGG + chr6_4:88487528-88487547 Msa1002670:CDS 50.0%
!! AGAGGTTGGGTTGGGATTAG+AGG + chr6_4:88488220-88488239 Msa1002670:CDS 50.0%
!! TGGGTGTTGAGAGGTGCATA+TGG + chr6_4:88488263-88488282 Msa1002670:CDS 50.0%
! GAGAGGTGCATATGGAAGAG+AGG + chr6_4:88488271-88488290 Msa1002670:CDS 50.0%
TCGAATGGAATTGAGGGGTG+TGG - chr6_4:88487436-88487455 None:intergenic 50.0%
GGGATTCCAGACTCTACACT+TGG - chr6_4:88487525-88487544 None:intergenic 50.0%
! TGTAGAGTCTGGAATCCCAG+AGG + chr6_4:88487527-88487546 Msa1002670:CDS 50.0%
! GTAGAGTCTGGAATCCCAGA+GGG + chr6_4:88487528-88487547 Msa1002670:CDS 50.0%
!! AGAGGTTGGGTTGGGATTAG+AGG + chr6_4:88488220-88488239 Msa1002670:CDS 50.0%
!! TGGGTGTTGAGAGGTGCATA+TGG + chr6_4:88488263-88488282 Msa1002670:CDS 50.0%
! GAGAGGTGCATATGGAAGAG+AGG + chr6_4:88488271-88488290 Msa1002670:CDS 50.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 88487354 88488787 88487354 ID=Msa1002670;Name=Msa1002670
chr6_4 mRNA 88487354 88488787 88487354 ID=Msa1002670-mRNA-1;Parent=Msa1002670;Name=Msa1002670-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|477
chr6_4 exon 88487354 88488787 88487354 ID=Msa1002670-mRNA-1:exon:17300;Parent=Msa1002670-mRNA-1
chr6_4 CDS 88487354 88488787 88487354 ID=Msa1002670-mRNA-1:cds;Parent=Msa1002670-mRNA-1
Gene Sequence

>Msa1002670

ATGGCACCTGGTCATCTTCTTCCAATGGTAGACATGGCAAAGTTATTAGCACGTCGCAAAGTTAAGGTAACAATACTCACCACACCCCTCAATTCCATTCGATTTCAATCCACCATAGATAGAGAAATTCAATTAGGATCACAAATCCAAATTATTCACATTAAATTTCCAAGTGTAGAGTCTGGAATCCCAGAGGGATGTGAAAGTGTTGACACTTTACCTTCAATGGATTTAATGTCCAATTTTTACATAGCTTTATGCAAGATGCAAAATTCACTAGAAAATGTTTTTGAAAAGCTAAGGCCAATTCCAAGTTGTGTAATTTCAGATAAACACATTTCATGTGTAGCTGAAATTGCAATGAAATTCAAAGTTCCGAGAATTATATTCGACGGGACTAATTGTTTTCATCTATTATGCAATCACAATTTACGTAATTTTAATAATATTCCTAATGAAGGAAAATTTATTGTTCCGGGAATGCCCGATCAAATTGAGTTGCGAAAATGTCAACTTCCAGGGTTATTTAATCCAGGGGAAAACAAAAAATTAAATGGTTTTCGCGAAGAAATAAGGGAAATAGAAGAAAAATATTCTTATGGTGTAGTGGTTAATAGTTTTGAAGAATTGGAAGAAAAATATGTTGAAGAGTATAAAAGAGTAACTGGTTATAAAGTATGGTGTGTTGGTCCAGTTTCATTATCAAATAAGGATGAGTTAGATAAATTTGAAAGAGGGAAGAAATTAAATTCAAATGATGAAAGTCAATATGATAAAATTCTCAAGTGGCTTGAATTGTGGCCTTCAAATTCTGTTATTTATGTTTGTCTTGGTAGTTTAAACCGTGCAACACCTCAACAATTGAAAGAGGTTGGGTTGGGATTAGAGGAAACAAAAAGGCCATTCATTTGGGTGTTGAGAGGTGCATATGGAAGAGAGGAAATGGAGAAATGGTTATATGAAGAAGGGTTTGAAGGAAGGGTGAAGAATAGAGGTTTTTTGATAAAGGGTTGGGCACCACAAGTGTTGATACTATCACACAAAGCAATAGGTGTTTTTTTGACACATTGTGGATGGAATTCAACATTGGAAGGGATTTCTTGTGGGGTGCCTTTAGTAACATTTCCTATGTTTGCTGAGCAGTTTTATAATGAGAAAGTTGTGGTGCAAGTTGTGAAGAATGGTGTAAGTGTGGGAGCTCAAAGTGCTGTGCATTTAGGAGAGGAAGAGAAGTGTTGTGTTGTTGTTAAGAGAGAAGATGTTAGAGATGCTATTGAGAAGGTAATGGGTGAGGATGAAGAAAAGGAAAAGATTAGGGAAAGAGCTAGAAAATATGCTGACATGGCAAGGAAAGCAATAGAAGAAGGTGGTTCTTCTTACCGCAACATGACTCTACTAATTGAAGATATAATAGATCTCCAAGGACAAAGCTAA
Protein sequence

>Msa1002670

MAPGHLLPMVDMAKLLARRKVKVTILTTPLNSIRFQSTIDREIQLGSQIQIIHIKFPSVESGIPEGCESVDTLPSMDLMSNFYIALCKMQNSLENVFEKLRPIPSCVISDKHISCVAEIAMKFKVPRIIFDGTNCFHLLCNHNLRNFNNIPNEGKFIVPGMPDQIELRKCQLPGLFNPGENKKLNGFREEIREIEEKYSYGVVVNSFEELEEKYVEEYKRVTGYKVWCVGPVSLSNKDELDKFERGKKLNSNDESQYDKILKWLELWPSNSVIYVCLGSLNRATPQQLKEVGLGLEETKRPFIWVLRGAYGREEMEKWLYEEGFEGRVKNRGFLIKGWAPQVLILSHKAIGVFLTHCGWNSTLEGISCGVPLVTFPMFAEQFYNEKVVVQVVKNGVSVGAQSAVHLGEEEKCCVVVKREDVRDAIEKVMGEDEEKEKIRERARKYADMARKAIEEGGSSYRNMTLLIEDIIDLQGQS*