AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0721930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721930 MtrunA17_Chr5g0413331 99.764 423 1 0 1 423 1 423 0.0 866
Msa0721930 MtrunA17_Chr2g0309471 91.726 423 35 0 1 423 1 423 0.0 801
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721930 AT1G10670.4 88.180 423 50 0 1 423 1 423 0.0 781
Msa0721930 AT1G10670.2 88.180 423 50 0 1 423 1 423 0.0 781
Msa0721930 AT1G10670.1 88.180 423 50 0 1 423 1 423 0.0 781
Msa0721930 AT1G60810.2 87.234 423 54 0 1 423 1 423 0.0 776
Msa0721930 AT1G60810.1 87.234 423 54 0 1 423 1 423 0.0 776
Msa0721930 AT1G10670.3 84.199 443 50 1 1 423 1 443 0.0 767
Msa0721930 AT1G09430.1 81.862 419 76 0 1 419 1 419 0.0 736

Find 132 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCTTTGTTACAGGTTTA+TGG 0.135148 5_1:-19057712 Msa0721930:intron
GAGCACTTTAAGAGACTTTC+TGG 0.142923 5_1:-19062013 Msa0721930:CDS
GTGAAACCTGACATGTTATT+TGG 0.166150 5_1:-19061102 Msa0721930:CDS
ATGGCTTTCTTCTTCTAAAT+TGG 0.172223 5_1:-19061127 Msa0721930:CDS
TCCGCTTAACTATCCATTTC+AGG 0.197287 5_1:-19057634 Msa0721930:exon
TTTCCATCAACCAATGTAAA+AGG 0.245174 5_1:+19060154 None:intergenic
TTAATTTCCTTTCCCGTTCC+TGG 0.255198 5_1:-19057551 Msa0721930:three_prime_UTR
GCCACTGAGTCTTTCATTCA+TGG 0.261851 5_1:-19059916 Msa0721930:CDS
TGGTTTGGTTGCCTTGAATT+TGG 0.268556 5_1:-19061064 Msa0721930:CDS
TGAACCCAAAGGGCCGAATT+TGG 0.281078 5_1:-19059034 Msa0721930:CDS
TTTCAACCTTTACTTGTGTT+AGG 0.282819 5_1:+19062583 None:intergenic
CGAATTTGGACAATGGTTGC+TGG 0.300252 5_1:-19059020 Msa0721930:CDS
GAATCGATATTGAAGAGAAT+TGG 0.314663 5_1:-19060718 Msa0721930:CDS
ATTGAAAATATAGGTTGAAA+TGG 0.324243 5_1:-19060864 Msa0721930:intron
TTCAATTAGCTAACCTCAAT+CGG 0.325607 5_1:+19057823 None:intergenic
GATCCAGGAATCAAAGTTAA+AGG 0.325987 5_1:-19057938 Msa0721930:intron
CGAGCACTTGGAGAGGAAAT+TGG 0.328982 5_1:-19057850 Msa0721930:CDS
GGTTGCCTTGAATTTGGATT+TGG 0.332415 5_1:-19061058 Msa0721930:CDS
TTGTCCAAATTCGGCCCTTT+GGG 0.337602 5_1:+19059030 None:intergenic
TTAATACAGGTAGGCGATCT+TGG 0.342068 5_1:-19058878 Msa0721930:intron
ATTGTCCAAATTCGGCCCTT+TGG 0.347305 5_1:+19059029 None:intergenic
AAGAAAGCATTAACCTGAAA+TGG 0.350004 5_1:+19057621 None:intergenic
GATGATGGCTAAGAACAATT+TGG 0.355324 5_1:+19062501 None:intergenic
ATACCAGTCATTGTTGCTTC+AGG 0.359407 5_1:+19057688 None:intergenic
CTGCAAAACCTCCTCTTCAT+TGG 0.362473 5_1:+19058811 None:intergenic
TGATGGAAAGCCTTATCCTT+TGG 0.370162 5_1:-19060140 Msa0721930:CDS
AAAGTTGAAAATATGGTAAT+AGG 0.371585 5_1:-19062563 Msa0721930:five_prime_UTR
CAGCAACCATTGTCCAAATT+CGG 0.373694 5_1:+19059021 None:intergenic
CTTACTTGTGCAGACTTGAT+AGG 0.377362 5_1:+19061980 None:intergenic
AAGGTTGAAAGTTGAAAATA+TGG 0.384202 5_1:-19062570 Msa0721930:five_prime_UTR
ACTTGTTGCAACCCTTCCCT+TGG 0.384681 5_1:-19060524 Msa0721930:CDS
CTTGGCTTTGCAAATGAGCT+TGG 0.386907 5_1:-19058860 Msa0721930:CDS
CAAGGAAATGATGAGGTTGT+TGG 0.390503 5_1:+19062469 None:intergenic
TTGAAAATATAGGTTGAAAT+GGG 0.391559 5_1:-19060863 Msa0721930:intron
AATCGATATTGAAGAGAATT+GGG 0.403789 5_1:-19060717 Msa0721930:CDS
CTTTCACAAATGAAGCAACT+TGG 0.406529 5_1:+19061034 None:intergenic
TAACTAAATTTACAAATTCC+AGG 0.417390 5_1:+19057533 None:intergenic
AGGTAATACTCTTCATTATG+TGG 0.426783 5_1:+19060794 None:intergenic
ATTGAATTTCCATTGCCATT+TGG 0.427635 5_1:-19059952 Msa0721930:CDS
TCAACAATGAAAGTTGTTAT+CGG 0.431360 5_1:+19060827 None:intergenic
TTCAACCTTTACTTGTGTTA+GGG 0.440620 5_1:+19062584 None:intergenic
TGAAACCTGACATGTTATTT+GGG 0.440993 5_1:-19061101 Msa0721930:CDS
AAGTTTGAAGTGAACGTTGA+TGG 0.443711 5_1:-19057581 Msa0721930:three_prime_UTR
AATTTACAAATTCCAGGAAC+GGG 0.450031 5_1:+19057539 None:intergenic
CGCTTCCCAAATAACATGTC+AGG 0.451633 5_1:+19061096 None:intergenic
ATAGATCAAGGGAGAAATTG+AGG 0.459317 5_1:-19060380 Msa0721930:intron
CATTCATGGATTAGATGAAA+AGG 0.460623 5_1:-19059902 Msa0721930:intron
TGTTGCAACCCTTCCCTTGG+AGG 0.460679 5_1:-19060521 Msa0721930:intron
TGGCATAATTCGGGCACTAA+AGG 0.461705 5_1:-19058049 Msa0721930:CDS
TGCAAAACCTCCTCTTCATT+GGG 0.463887 5_1:+19058812 None:intergenic
GAATTTGGACAATGGTTGCT+GGG 0.465292 5_1:-19059019 Msa0721930:CDS
TTTGGGAAGCGTGGTAAAAG+TGG 0.468444 5_1:-19061084 Msa0721930:CDS
AACCTCATCCATCCTCCTTC+CGG 0.471441 5_1:-19062330 Msa0721930:intron
GTGGATATGGAGAGAAGAAA+AGG 0.481837 5_1:+19057355 None:intergenic
TAAATTGAATTTACCTCCAA+GGG 0.486977 5_1:+19060508 None:intergenic
AATGACTGGTATATGCAAAC+AGG 0.488870 5_1:-19057677 Msa0721930:CDS
GGGAATTACCGGAAGGAGGA+TGG 0.489398 5_1:+19062322 None:intergenic
AATTTCCATTGCCATTTGGA+AGG 0.489649 5_1:-19059948 Msa0721930:CDS
CCTCTCATATCCAAAGGATA+AGG 0.491900 5_1:+19060130 None:intergenic
TGATTCTAAGAGATTGTTGA+AGG 0.494704 5_1:-19062035 Msa0721930:CDS
TGTTGGGTTGGTGAAGATGA+TGG 0.496535 5_1:+19062486 None:intergenic
ACTTACATCAATTACAACTC+TGG 0.505750 5_1:+19058784 None:intergenic
TTGGGCCAAATCCAAATTCA+AGG 0.506250 5_1:+19061053 None:intergenic
TTCACTGTGTTGAACCCAAA+GGG 0.510313 5_1:-19059044 Msa0721930:CDS
GGAAATTGGCATCCCGATTG+AGG 0.511227 5_1:-19057836 Msa0721930:intron
AATAGCCCTAACACAAGTAA+AGG 0.513847 5_1:-19062589 Msa0721930:five_prime_UTR
GTCTGTCAGAGACAATGTTA+AGG 0.515654 5_1:+19060774 None:intergenic
GGAAACTATGCAGAATATAG+TGG 0.517156 5_1:-19058839 Msa0721930:CDS
AAGGAAATGATGAGGTTGTT+GGG 0.517380 5_1:+19062470 None:intergenic
GAAGCGTGGTAAAAGTGGTT+TGG 0.519204 5_1:-19061079 Msa0721930:CDS
TCAATTAGCTAACCTCAATC+GGG 0.519937 5_1:+19057824 None:intergenic
TCTTCATTATGTGGGATGAA+AGG 0.519980 5_1:+19060803 None:intergenic
TTAAATTGAATTTACCTCCA+AGG 0.523717 5_1:+19060507 None:intergenic
TATTGAAGAGAATTGGGATA+AGG 0.523886 5_1:-19060711 Msa0721930:intron
TTGAATTTACCTCCAAGGGA+AGG 0.525190 5_1:+19060512 None:intergenic
AGGGAAGGGTTGCAACAAGT+GGG 0.528893 5_1:+19060527 None:intergenic
GGTTGAAATGGGTGGATGCA+AGG 0.529860 5_1:-19060852 Msa0721930:CDS
TTTCACAAATGAAGCAACTT+GGG 0.530236 5_1:+19061035 None:intergenic
GGTAATACTCTTCATTATGT+GGG 0.530693 5_1:+19060795 None:intergenic
AACATTGTCTCTGACAGACT+TGG 0.532898 5_1:-19060770 Msa0721930:CDS
GAAAGAGCGTCTTGGTAAAG+AGG 0.535308 5_1:-19061016 Msa0721930:intron
TGCACCTTTATGTGAGGCGA+GGG 0.535874 5_1:-19057906 Msa0721930:CDS
TGAATTTACCTCCAAGGGAA+GGG 0.537577 5_1:+19060513 None:intergenic
GGACCTGAAGCAACAATGAC+TGG 0.541528 5_1:-19057691 Msa0721930:CDS
AAGGGAAGGGTTGCAACAAG+TGG 0.542096 5_1:+19060526 None:intergenic
AGGGCTCTTGTTATAGGTGG+AGG 0.545602 5_1:-19058108 Msa0721930:CDS
TTGAAAATATGGTAATAGGT+AGG 0.549340 5_1:-19062559 Msa0721930:five_prime_UTR
AAAACAAAACAATGAACATG+TGG 0.549930 5_1:+19062532 None:intergenic
ACAAATTCCAGGAACGGGAA+AGG 0.550902 5_1:+19057544 None:intergenic
AAACAAAACAATGAACATGT+GGG 0.556297 5_1:+19062533 None:intergenic
GCACTCATAACCCTTCCAAA+TGG 0.556781 5_1:+19059937 None:intergenic
TACCGGAAGGAGGATGGATG+AGG 0.557016 5_1:+19062328 None:intergenic
ATTTCCATTGCCATTTGGAA+GGG 0.562037 5_1:-19059947 Msa0721930:CDS
GTTGAAATGGGTGGATGCAA+GGG 0.564098 5_1:-19060851 Msa0721930:CDS
TAGTGTCATCTACGCTGATA+CGG 0.565668 5_1:-19058988 Msa0721930:intron
AAATTTACAAATTCCAGGAA+CGG 0.566479 5_1:+19057538 None:intergenic
TCATTTGTGAAAGAGCGTCT+TGG 0.569120 5_1:-19061024 Msa0721930:CDS
AAATGATGAGGTTGTTGGGT+TGG 0.569363 5_1:+19062474 None:intergenic
AGAAATTGAGGAATTTCTCA+AGG 0.569980 5_1:-19060368 Msa0721930:CDS
GATGAGGTTGGTGCGATGAG+TGG 0.571889 5_1:+19062344 None:intergenic
GTTTGAAGAGAAAGAAAACA+AGG 0.583851 5_1:+19062451 None:intergenic
ATAACCCTTCCAAATGGCAA+TGG 0.584751 5_1:+19059943 None:intergenic
AAAAGGGCTCTTGTTATAGG+TGG 0.587346 5_1:-19058111 Msa0721930:CDS
AAAATATAGGTTGAAATGGG+TGG 0.588383 5_1:-19060860 Msa0721930:intron
ACCTGAAATGGATAGTTAAG+CGG 0.591889 5_1:+19057633 None:intergenic
CCTTATCCTTTGGATATGAG+AGG 0.593802 5_1:-19060130 Msa0721930:CDS
AAGAAAACAAGGAAATGATG+AGG 0.596363 5_1:+19062462 None:intergenic
TGTGCAACTGCCGACCCCGA+TGG 0.600634 5_1:-19058138 Msa0721930:CDS
AGCTCGCCTCTCATATCCAA+AGG 0.606308 5_1:+19060124 None:intergenic
ATCTGGGAATTACCGGAAGG+AGG 0.607069 5_1:+19062318 None:intergenic
GGGAAGGGTTGCAACAAGTG+GGG 0.607919 5_1:+19060528 None:intergenic
CTTTAAGAGACTTTCTGGCA+AGG 0.607933 5_1:-19062008 Msa0721930:CDS
AATTCGGGCACTAAAGGAGA+AGG 0.611871 5_1:-19058043 Msa0721930:intron
CACCTTTATGTGAGGCGAGG+GGG 0.612540 5_1:-19057904 Msa0721930:CDS
AATTTGGACAATGGTTGCTG+GGG 0.612808 5_1:-19059018 Msa0721930:CDS
TTTCACTGAGCTGCAAGACA+AGG 0.614695 5_1:-19061154 Msa0721930:CDS
TAGTGGTGCACCCAATGAAG+AGG 0.615153 5_1:-19058822 Msa0721930:CDS
ATGCACCTTTATGTGAGGCG+AGG 0.615319 5_1:-19057907 Msa0721930:CDS
AGCTGCAAGACAAGGAACAA+TGG 0.615951 5_1:-19061146 Msa0721930:CDS
AAAGGGCCGAATTTGGACAA+TGG 0.617352 5_1:-19059027 Msa0721930:CDS
GATGTAAGAGACACTCCCGT+TGG 0.624325 5_1:+19060562 None:intergenic
ATTTGGACAATGGTTGCTGG+GGG 0.626405 5_1:-19059017 Msa0721930:CDS
AGGTTGGTGCGATGAGTGGT+TGG 0.629722 5_1:+19062348 None:intergenic
GACATGTTATTTGGGAAGCG+TGG 0.630841 5_1:-19061093 Msa0721930:CDS
GGAAGGAGGATGGATGAGGT+TGG 0.631840 5_1:+19062332 None:intergenic
TGGTGCACCCAATGAAGAGG+AGG 0.642713 5_1:-19058819 Msa0721930:CDS
AACAAAACAATGAACATGTG+GGG 0.644913 5_1:+19062534 None:intergenic
CAAGAATGCACCTTTATGTG+AGG 0.651491 5_1:-19057912 Msa0721930:CDS
ATTCACTGTGTTGAACCCAA+AGG 0.654553 5_1:-19059045 Msa0721930:CDS
GCACCTTTATGTGAGGCGAG+GGG 0.663860 5_1:-19057905 Msa0721930:CDS
TTGCAGCTCAGTGAAATCAG+TGG 0.670844 5_1:+19061161 None:intergenic
TCCATGAATGAAAGACTCAG+TGG 0.707219 5_1:+19059915 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAATCTTTAAATTGAT+AGG + chr5_1:19061232-19061251 None:intergenic 10.0%
!! TCAATTTAAAGATTTAATTA+TGG - chr5_1:19061233-19061252 Msa0721930:intron 10.0%
!!! AATTTTAGATTAAGAAGAAA+TGG - chr5_1:19057880-19057899 Msa0721930:CDS 15.0%
!!! TTTTGTGATAAATTTTTAAG+TGG - chr5_1:19058103-19058122 Msa0721930:CDS 15.0%
!!! TTTATTTTGAACTTATCTTA+TGG + chr5_1:19058639-19058658 None:intergenic 15.0%
!! TTGAATAAAATTGTACATTT+AGG + chr5_1:19060103-19060122 None:intergenic 15.0%
!!! GCTATTTTTTAAATTATTAC+TGG - chr5_1:19060769-19060788 Msa0721930:CDS 15.0%
!! TGCTAAATATTAATTAATAC+AGG - chr5_1:19061069-19061088 Msa0721930:CDS 15.0%
!! AAATATTAATTAATACAGGT+AGG - chr5_1:19061073-19061092 Msa0721930:CDS 15.0%
!! AAAGTTGAAAATATGGTAAT+AGG - chr5_1:19057397-19057416 Msa0721930:three_prime_UTR 20.0%
!! ATTGAAAAATGAAAGAAAGT+GGG + chr5_1:19057668-19057687 None:intergenic 20.0%
!! AATTGAAAAATGAAAGAAAG+TGG + chr5_1:19057669-19057688 None:intergenic 20.0%
!! ATCAAAACTAAGATCAAAAT+TGG + chr5_1:19057723-19057742 None:intergenic 20.0%
!! ATAATATGCAATTTCATTCA+GGG + chr5_1:19057790-19057809 None:intergenic 20.0%
!! TATAATATGCAATTTCATTC+AGG + chr5_1:19057791-19057810 None:intergenic 20.0%
!!! TTCACGACAATTTTTTTAAA+TGG + chr5_1:19058247-19058266 None:intergenic 20.0%
!!! ATATCACTTTTACTTAAAGT+AGG - chr5_1:19058370-19058389 Msa0721930:intron 20.0%
!! ATAAGCTGAAAAATATCTTA+TGG - chr5_1:19058543-19058562 Msa0721930:intron 20.0%
!! TAAGCTGAAAAATATCTTAT+GGG - chr5_1:19058544-19058563 Msa0721930:intron 20.0%
!! AAATATATCAATGGTTGAAA+GGG + chr5_1:19059063-19059082 None:intergenic 20.0%
!! AAAATATATCAATGGTTGAA+AGG + chr5_1:19059064-19059083 None:intergenic 20.0%
!!! ATTGAAAATATAGGTTGAAA+TGG - chr5_1:19059096-19059115 Msa0721930:intron 20.0%
!!! TTGAAAATATAGGTTGAAAT+GGG - chr5_1:19059097-19059116 Msa0721930:intron 20.0%
!! TTGTTCGTAAAATAACAAAT+TGG + chr5_1:19059482-19059501 None:intergenic 20.0%
!! AATCTTAAAAGAAAACAGTA+CGG + chr5_1:19059722-19059741 None:intergenic 20.0%
!!! AATGTTATGTGTTATTTTGA+AGG - chr5_1:19059909-19059928 Msa0721930:CDS 20.0%
!! AAGGTAAACTAATATAACTT+TGG - chr5_1:19060077-19060096 Msa0721930:intron 20.0%
!! ACAAAAAATATGTACTTAAC+AGG + chr5_1:19060165-19060184 None:intergenic 20.0%
!!! TGTTTTTTTAACTTCTTACT+TGG - chr5_1:19060182-19060201 Msa0721930:CDS 20.0%
!!! GTTTTTTTAACTTCTTACTT+GGG - chr5_1:19060183-19060202 Msa0721930:CDS 20.0%
!!! TTTTTTTAACTTCTTACTTG+GGG - chr5_1:19060184-19060203 Msa0721930:CDS 20.0%
!!! TTTCATTGTCTTCATTTTAT+GGG + chr5_1:19060364-19060383 None:intergenic 20.0%
!!! ATCTTTTGCCAATAATTTAT+TGG - chr5_1:19061490-19061509 Msa0721930:intron 20.0%
!! AAATTGGTCCAATAAATTAT+TGG + chr5_1:19061501-19061520 None:intergenic 20.0%
!! GTGTTATAAGTTAGTTAATT+TGG + chr5_1:19061549-19061568 None:intergenic 20.0%
!!! TTTGTAATTTTGGTTAATTC+AGG - chr5_1:19061622-19061641 Msa0721930:intron 20.0%
!!! TTGTAATTTTGGTTAATTCA+GGG - chr5_1:19061623-19061642 Msa0721930:intron 20.0%
!! TTGTTCAATACTGTAAATAA+AGG + chr5_1:19062170-19062189 None:intergenic 20.0%
!!! AGCAGTTTATTAATTCTTTT+TGG - chr5_1:19062225-19062244 Msa0721930:intron 20.0%
!! TAACTAAATTTACAAATTCC+AGG + chr5_1:19062430-19062449 None:intergenic 20.0%
! AAGGTTGAAAGTTGAAAATA+TGG - chr5_1:19057390-19057409 Msa0721930:three_prime_UTR 25.0%
! TTGAAAATATGGTAATAGGT+AGG - chr5_1:19057401-19057420 Msa0721930:three_prime_UTR 25.0%
! AAACAAAACAATGAACATGT+GGG + chr5_1:19057430-19057449 None:intergenic 25.0%
! AAAACAAAACAATGAACATG+TGG + chr5_1:19057431-19057450 None:intergenic 25.0%
!! CCATTTCAAATTAGCTTAAT+GGG + chr5_1:19057748-19057767 None:intergenic 25.0%
!! CCATTAAGCTAATTTGAAAT+GGG - chr5_1:19057746-19057765 Msa0721930:intron 25.0%
! TTGCATATTATATAGTAGTG+AGG - chr5_1:19057799-19057818 Msa0721930:intron 25.0%
! GTTAATTATGTCCGAATTTA+TGG - chr5_1:19058147-19058166 Msa0721930:intron 25.0%
!!! GCTTATTGATTTCTGAAAAA+TGG + chr5_1:19058691-19058710 None:intergenic 25.0%
!!! CTTGAGTATTGAATTTGTTT+TGG - chr5_1:19058753-19058772 Msa0721930:intron 25.0%
! AATGTAAGACAATGAATGTA+AGG + chr5_1:19059008-19059027 None:intergenic 25.0%
! ACGTGACTAAAATATATCAA+TGG + chr5_1:19059072-19059091 None:intergenic 25.0%
! CACGTGTTTATTGAAAATAT+AGG - chr5_1:19059087-19059106 Msa0721930:intron 25.0%
! TCAACAATGAAAGTTGTTAT+CGG + chr5_1:19059136-19059155 None:intergenic 25.0%
! AATCGATATTGAAGAGAATT+GGG - chr5_1:19059243-19059262 Msa0721930:intron 25.0%
!! TAAGAGAAAATTTTATGTGC+AGG + chr5_1:19059322-19059341 None:intergenic 25.0%
! ATTATCCATAACCTTCAAAT+TGG - chr5_1:19059341-19059360 Msa0721930:intron 25.0%
!!! TAAGACTGTTTTTATTCCAA+CGG - chr5_1:19059382-19059401 Msa0721930:intron 25.0%
! TAAATTGAATTTACCTCCAA+GGG + chr5_1:19059455-19059474 None:intergenic 25.0%
! TTAAATTGAATTTACCTCCA+AGG + chr5_1:19059456-19059475 None:intergenic 25.0%
!! TTTTACGAACAAACTAACTT+TGG - chr5_1:19059490-19059509 Msa0721930:intron 25.0%
! TCTTGTTAGTTCATACTAAT+GGG - chr5_1:19059934-19059953 Msa0721930:CDS 25.0%
!!! TTTTTTAACTTCTTACTTGG+GGG - chr5_1:19060185-19060204 Msa0721930:CDS 25.0%
!! GTGTAATTTAAAATGTTGCA+AGG - chr5_1:19060246-19060265 Msa0721930:intron 25.0%
!! GTTTCATTGTCTTCATTTTA+TGG + chr5_1:19060365-19060384 None:intergenic 25.0%
! ACAGAGAATGAAATGATAAT+CGG - chr5_1:19060439-19060458 Msa0721930:intron 25.0%
!! TGATGTCTCTAAAAAACTAT+AGG - chr5_1:19061283-19061302 Msa0721930:intron 25.0%
!! GTAGGAGTAAACAATAATTT+TGG - chr5_1:19061391-19061410 Msa0721930:intron 25.0%
!! AATAGAGTAAACACTCATTT+TGG + chr5_1:19061685-19061704 None:intergenic 25.0%
!! TACAGTATTGAACAATCAAA+TGG - chr5_1:19062175-19062194 Msa0721930:intron 25.0%
!! TTTTTGGATATCTTTGTTAC+AGG - chr5_1:19062241-19062260 Msa0721930:intron 25.0%
! ATATCTTTGTTACAGGTTTA+TGG - chr5_1:19062248-19062267 Msa0721930:intron 25.0%
! AAATTTACAAATTCCAGGAA+CGG + chr5_1:19062425-19062444 None:intergenic 25.0%
!! TCAGTTTTTGTAGAATTTGA+TGG - chr5_1:19062504-19062523 Msa0721930:five_prime_UTR 25.0%
TTCAACCTTTACTTGTGTTA+GGG + chr5_1:19057379-19057398 None:intergenic 30.0%
TTTCAACCTTTACTTGTGTT+AGG + chr5_1:19057380-19057399 None:intergenic 30.0%
AACAAAACAATGAACATGTG+GGG + chr5_1:19057429-19057448 None:intergenic 30.0%
AAGAAAACAAGGAAATGATG+AGG + chr5_1:19057501-19057520 None:intergenic 30.0%
GTTTGAAGAGAAAGAAAACA+AGG + chr5_1:19057512-19057531 None:intergenic 30.0%
CCCATTAAGCTAATTTGAAA+TGG - chr5_1:19057745-19057764 Msa0721930:intron 30.0%
! CCCATTTCAAATTAGCTTAA+TGG + chr5_1:19057749-19057768 None:intergenic 30.0%
! TGATTCTAAGAGATTGTTGA+AGG - chr5_1:19057925-19057944 Msa0721930:CDS 30.0%
TTATGTCCGAATTTATGGTT+AGG - chr5_1:19058152-19058171 Msa0721930:intron 30.0%
TATGTCCGAATTTATGGTTA+GGG - chr5_1:19058153-19058172 Msa0721930:intron 30.0%
ATCTTCCCTAACCATAAATT+CGG + chr5_1:19058161-19058180 None:intergenic 30.0%
GTAGAAAGAACACAATTGAT+TGG - chr5_1:19058285-19058304 Msa0721930:intron 30.0%
AGCATATTAAGCACAATGTA+TGG + chr5_1:19058598-19058617 None:intergenic 30.0%
CGTGTATGCAAGTTTAATAA+AGG - chr5_1:19058664-19058683 Msa0721930:intron 30.0%
!!! TTGTTTTGGTTTGTGCTTTA+AGG - chr5_1:19058767-19058786 Msa0721930:intron 30.0%
ATGGCTTTCTTCTTCTAAAT+TGG - chr5_1:19058833-19058852 Msa0721930:CDS 30.0%
! TGAAACCTGACATGTTATTT+GGG - chr5_1:19058859-19058878 Msa0721930:CDS 30.0%
TTTCACAAATGAAGCAACTT+GGG + chr5_1:19058928-19058947 None:intergenic 30.0%
ACAATGAATGTAAGGTTTGA+AGG + chr5_1:19059000-19059019 None:intergenic 30.0%
! AAAATATAGGTTGAAATGGG+TGG - chr5_1:19059100-19059119 Msa0721930:intron 30.0%
GGTAATACTCTTCATTATGT+GGG + chr5_1:19059168-19059187 None:intergenic 30.0%
AGGTAATACTCTTCATTATG+TGG + chr5_1:19059169-19059188 None:intergenic 30.0%
GAATCGATATTGAAGAGAAT+TGG - chr5_1:19059242-19059261 Msa0721930:intron 30.0%
TATTGAAGAGAATTGGGATA+AGG - chr5_1:19059249-19059268 Msa0721930:intron 30.0%
! AAGATGAAAAGTATGTGTTG+TGG + chr5_1:19059277-19059296 None:intergenic 30.0%
TTTATGTGCAGGAAATAGAT+GGG + chr5_1:19059311-19059330 None:intergenic 30.0%
! TTTTATGTGCAGGAAATAGA+TGG + chr5_1:19059312-19059331 None:intergenic 30.0%
ATATGACCAAACCAATTTGA+AGG + chr5_1:19059355-19059374 None:intergenic 30.0%
!! AATTGGTTTGGTCATATTTC+AGG - chr5_1:19059358-19059377 Msa0721930:intron 30.0%
!!! AAGACTGTTTTTATTCCAAC+GGG - chr5_1:19059383-19059402 Msa0721930:intron 30.0%
!!! TGCACTGTTTTTATAGATCA+AGG - chr5_1:19059568-19059587 Msa0721930:intron 30.0%
!!! GCACTGTTTTTATAGATCAA+GGG - chr5_1:19059569-19059588 Msa0721930:intron 30.0%
AGAAATTGAGGAATTTCTCA+AGG - chr5_1:19059592-19059611 Msa0721930:intron 30.0%
!! GTGATTTTCACTCTTTTTCA+AGG - chr5_1:19059614-19059633 Msa0721930:intron 30.0%
! AGAGATGAATCCTTTTACAT+TGG - chr5_1:19059796-19059815 Msa0721930:intron 30.0%
!! AATCCTTTTACATTGGTTGA+TGG - chr5_1:19059803-19059822 Msa0721930:intron 30.0%
TTTCCATCAACCAATGTAAA+AGG + chr5_1:19059809-19059828 None:intergenic 30.0%
TTTCAAGAACTTCAAGAAGT+AGG - chr5_1:19059874-19059893 Msa0721930:intron 30.0%
! GTCTTGTTAGTTCATACTAA+TGG - chr5_1:19059933-19059952 Msa0721930:CDS 30.0%
ATTGAATTTCCATTGCCATT+TGG - chr5_1:19060008-19060027 Msa0721930:intron 30.0%
!! CATTCATGGATTAGATGAAA+AGG - chr5_1:19060058-19060077 Msa0721930:intron 30.0%
TTCACAAGTTATGAAACTGA+TGG - chr5_1:19060336-19060355 Msa0721930:intron 30.0%
!! AGTTTGTTAGCAAATGTGTT+AGG + chr5_1:19060506-19060525 None:intergenic 30.0%
TAACATATCCTAGAAGAAAG+TGG + chr5_1:19060638-19060657 None:intergenic 30.0%
!! ACTTTCTTCTAGGATATGTT+AGG - chr5_1:19060637-19060656 Msa0721930:intron 30.0%
TTGAATGCAACTACATGTTT+GGG + chr5_1:19060744-19060763 None:intergenic 30.0%
ATTGAATGCAACTACATGTT+TGG + chr5_1:19060745-19060764 None:intergenic 30.0%
TCATCAATAAGCCATTGATA+CGG + chr5_1:19060804-19060823 None:intergenic 30.0%
ACTTACATCAATTACAACTC+TGG + chr5_1:19061179-19061198 None:intergenic 30.0%
! TTGTTGTTGTTGTATTCTGT+AGG - chr5_1:19061373-19061392 Msa0721930:intron 30.0%
!!! TCAAGGGTGTTTATGTATTT+TGG + chr5_1:19061466-19061485 None:intergenic 30.0%
TTGGCAAAAGATATACTCAA+GGG + chr5_1:19061482-19061501 None:intergenic 30.0%
ATTGGCAAAAGATATACTCA+AGG + chr5_1:19061483-19061502 None:intergenic 30.0%
TATTGGACCAATTTGACTAA+TGG - chr5_1:19061507-19061526 Msa0721930:intron 30.0%
TTGAATATGTCCATTGTAGT+AGG + chr5_1:19061586-19061605 None:intergenic 30.0%
TACTACAATGGACATATTCA+AGG - chr5_1:19061585-19061604 Msa0721930:intron 30.0%
TCATTTGACATACGTATTCA+AGG - chr5_1:19061658-19061677 Msa0721930:intron 30.0%
!! CTACTTTTAGTGGCATAATT+CGG - chr5_1:19061901-19061920 Msa0721930:intron 30.0%
! TACTTTTAGTGGCATAATTC+GGG - chr5_1:19061902-19061921 Msa0721930:intron 30.0%
AAGTAAAACTCTACTGTTGT+GGG + chr5_1:19061947-19061966 None:intergenic 30.0%
TAAGTAAAACTCTACTGTTG+TGG + chr5_1:19061948-19061967 None:intergenic 30.0%
! CTTTTAAACTATTGTGATCC+AGG - chr5_1:19062007-19062026 Msa0721930:CDS 30.0%
TTCAATTAGCTAACCTCAAT+CGG + chr5_1:19062140-19062159 None:intergenic 30.0%
AACAATCAAATGGTGCTTAA+TGG - chr5_1:19062185-19062204 Msa0721930:intron 30.0%
ACAATCAAATGGTGCTTAAT+GGG - chr5_1:19062186-19062205 Msa0721930:intron 30.0%
TAATGGGAAAAATTGTGTTG+AGG - chr5_1:19062202-19062221 Msa0721930:intron 30.0%
!! AAGAAAGCATTAACCTGAAA+TGG + chr5_1:19062342-19062361 None:intergenic 30.0%
AATTTACAAATTCCAGGAAC+GGG + chr5_1:19062424-19062443 None:intergenic 30.0%
! GACTTCATTTTGTAAACACA+CGG + chr5_1:19062455-19062474 None:intergenic 30.0%
! ACATTTTCAACCACTCTTTT+TGG + chr5_1:19062480-19062499 None:intergenic 30.0%
AATAGCCCTAACACAAGTAA+AGG - chr5_1:19057371-19057390 Msa0721930:three_prime_UTR 35.0%
! GATGATGGCTAAGAACAATT+TGG + chr5_1:19057462-19057481 None:intergenic 35.0%
AAGGAAATGATGAGGTTGTT+GGG + chr5_1:19057493-19057512 None:intergenic 35.0%
!!! ACGATGTTAGTTTTGTGTGA+TGG + chr5_1:19057574-19057593 None:intergenic 35.0%
AATGAAAGAAAGTGGGATCT+GGG + chr5_1:19057661-19057680 None:intergenic 35.0%
AAATGAAAGAAAGTGGGATC+TGG + chr5_1:19057662-19057681 None:intergenic 35.0%
GTTAGTGCAGTTCAAATATG+TGG - chr5_1:19058125-19058144 Msa0721930:CDS 35.0%
!! TGGTTTGTGCTTTAAGGTTA+CGG - chr5_1:19058773-19058792 Msa0721930:intron 35.0%
GTGAAACCTGACATGTTATT+TGG - chr5_1:19058858-19058877 Msa0721930:CDS 35.0%
CTTTCACAAATGAAGCAACT+TGG + chr5_1:19058929-19058948 None:intergenic 35.0%
TGAATGTAAGGTTTGAAGGA+CGG + chr5_1:19058996-19059015 None:intergenic 35.0%
TCTTCATTATGTGGGATGAA+AGG + chr5_1:19059160-19059179 None:intergenic 35.0%
! AGCATAAGCTTTTCAGAATG+TGG - chr5_1:19059217-19059236 Msa0721930:intron 35.0%
! ATAAGCTTTTCAGAATGTGG+AGG - chr5_1:19059220-19059239 Msa0721930:intron 35.0%
TTATGTGCAGGAAATAGATG+GGG + chr5_1:19059310-19059329 None:intergenic 35.0%
CCAAACCAATTTGAAGGTTA+TGG + chr5_1:19059349-19059368 None:intergenic 35.0%
CCATAACCTTCAAATTGGTT+TGG - chr5_1:19059346-19059365 Msa0721930:intron 35.0%
ATAGATCAAGGGAGAAATTG+AGG - chr5_1:19059580-19059599 Msa0721930:intron 35.0%
AATGTATATTAACACGCCAC+TGG - chr5_1:19059652-19059671 Msa0721930:intron 35.0%
ATGTATATTAACACGCCACT+GGG - chr5_1:19059653-19059672 Msa0721930:intron 35.0%
!! CTTTACTTTTCTGTCAGATC+TGG - chr5_1:19059760-19059779 Msa0721930:intron 35.0%
! AATTTCCATTGCCATTTGGA+AGG - chr5_1:19060012-19060031 Msa0721930:intron 35.0%
! ATTTCCATTGCCATTTGGAA+GGG - chr5_1:19060013-19060032 Msa0721930:intron 35.0%
ATTACACCAGATTCCTCTAA+GGG + chr5_1:19060233-19060252 None:intergenic 35.0%
AATTACACCAGATTCCTCTA+AGG + chr5_1:19060234-19060253 None:intergenic 35.0%
AATTCAGAGAGTTCAGTTAC+AGG + chr5_1:19060574-19060593 None:intergenic 35.0%
AACTGAACTCTCTGAATTCT+AGG - chr5_1:19060576-19060595 Msa0721930:CDS 35.0%
ACTGAACTCTCTGAATTCTA+GGG - chr5_1:19060577-19060596 Msa0721930:CDS 35.0%
CCATATGAGAGAAAATGAGT+TGG + chr5_1:19060613-19060632 None:intergenic 35.0%
! CCAACTCATTTTCTCTCATA+TGG - chr5_1:19060610-19060629 Msa0721930:intron 35.0%
!! GAAGTATTGCTGTTTCTGAT+AGG + chr5_1:19060666-19060685 None:intergenic 35.0%
GGAAACTATGCAGAATATAG+TGG - chr5_1:19061121-19061140 Msa0721930:CDS 35.0%
GTGTCTTCCATTAGTCAAAT+TGG + chr5_1:19061517-19061536 None:intergenic 35.0%
ACTAATGGAAGACACATTCA+AGG - chr5_1:19061522-19061541 Msa0721930:intron 35.0%
TATGTCCATTGTAGTAGGTT+TGG + chr5_1:19061581-19061600 None:intergenic 35.0%
!!! CTATAACAAGAGCCCTTTTT+TGG + chr5_1:19061848-19061867 None:intergenic 35.0%
! CAAAAAAGGGCTCTTGTTAT+AGG - chr5_1:19061846-19061865 Msa0721930:intron 35.0%
GATCCAGGAATCAAAGTTAA+AGG - chr5_1:19062022-19062041 Msa0721930:CDS 35.0%
!!! GCATTTTTTCTAGACCCTTT+TGG + chr5_1:19062091-19062110 None:intergenic 35.0%
TCAATTAGCTAACCTCAATC+GGG + chr5_1:19062139-19062158 None:intergenic 35.0%
AATGACTGGTATATGCAAAC+AGG - chr5_1:19062283-19062302 Msa0721930:intron 35.0%
ACCTGAAATGGATAGTTAAG+CGG + chr5_1:19062330-19062349 None:intergenic 35.0%
! AAGTTTGAAGTGAACGTTGA+TGG - chr5_1:19062379-19062398 Msa0721930:five_prime_UTR 35.0%
ATGAAGTCATCCAAAAAGAG+TGG - chr5_1:19062467-19062486 Msa0721930:five_prime_UTR 35.0%
AAATGATGAGGTTGTTGGGT+TGG + chr5_1:19057489-19057508 None:intergenic 40.0%
CAAGGAAATGATGAGGTTGT+TGG + chr5_1:19057494-19057513 None:intergenic 40.0%
! GAGCACTTTAAGAGACTTTC+TGG - chr5_1:19057947-19057966 Msa0721930:intron 40.0%
! CTTTAAGAGACTTTCTGGCA+AGG - chr5_1:19057952-19057971 Msa0721930:intron 40.0%
CTTACTTGTGCAGACTTGAT+AGG + chr5_1:19057983-19058002 None:intergenic 40.0%
TATGGCATAAGCACTTGCAA+AGG + chr5_1:19058621-19058640 None:intergenic 40.0%
!! TGGTTTGGTTGCCTTGAATT+TGG - chr5_1:19058896-19058915 Msa0721930:intron 40.0%
GGTTGCCTTGAATTTGGATT+TGG - chr5_1:19058902-19058921 Msa0721930:intron 40.0%
TTGGGCCAAATCCAAATTCA+AGG + chr5_1:19058910-19058929 None:intergenic 40.0%
!! TCATTTGTGAAAGAGCGTCT+TGG - chr5_1:19058936-19058955 Msa0721930:intron 40.0%
GTCTGTCAGAGACAATGTTA+AGG + chr5_1:19059189-19059208 None:intergenic 40.0%
AACATTGTCTCTGACAGACT+TGG - chr5_1:19059190-19059209 Msa0721930:intron 40.0%
TGAATTTACCTCCAAGGGAA+GGG + chr5_1:19059450-19059469 None:intergenic 40.0%
TTGAATTTACCTCCAAGGGA+AGG + chr5_1:19059451-19059470 None:intergenic 40.0%
! TGATGGAAAGCCTTATCCTT+TGG - chr5_1:19059820-19059839 Msa0721930:intron 40.0%
CCTCTCATATCCAAAGGATA+AGG + chr5_1:19059833-19059852 None:intergenic 40.0%
CCTTATCCTTTGGATATGAG+AGG - chr5_1:19059830-19059849 Msa0721930:intron 40.0%
ATGAACAGACGTTGTCGTAT+TGG - chr5_1:19059969-19059988 Msa0721930:intron 40.0%
ATAACCCTTCCAAATGGCAA+TGG + chr5_1:19060020-19060039 None:intergenic 40.0%
TCCATGAATGAAAGACTCAG+TGG + chr5_1:19060048-19060067 None:intergenic 40.0%
TTACACCAGATTCCTCTAAG+GGG + chr5_1:19060232-19060251 None:intergenic 40.0%
GTTACAGGTTCGCTATATGA+AGG + chr5_1:19060559-19060578 None:intergenic 40.0%
ATATGGCTCCACTTTCTTCT+AGG - chr5_1:19060627-19060646 Msa0721930:intron 40.0%
ATTCACTGTGTTGAACCCAA+AGG - chr5_1:19060915-19060934 Msa0721930:intron 40.0%
TTCACTGTGTTGAACCCAAA+GGG - chr5_1:19060916-19060935 Msa0721930:intron 40.0%
CAGCAACCATTGTCCAAATT+CGG + chr5_1:19060942-19060961 None:intergenic 40.0%
GAATTTGGACAATGGTTGCT+GGG - chr5_1:19060941-19060960 Msa0721930:intron 40.0%
AATTTGGACAATGGTTGCTG+GGG - chr5_1:19060942-19060961 Msa0721930:intron 40.0%
TAGTGTCATCTACGCTGATA+CGG - chr5_1:19060972-19060991 Msa0721930:intron 40.0%
GTCACTTCATGCTGCAAATA+TGG + chr5_1:19061041-19061060 None:intergenic 40.0%
TTAATACAGGTAGGCGATCT+TGG - chr5_1:19061082-19061101 Msa0721930:CDS 40.0%
TGCAAAACCTCCTCTTCATT+GGG + chr5_1:19061151-19061170 None:intergenic 40.0%
! TATGGTGCTAACGTGAACAA+CGG - chr5_1:19061251-19061270 Msa0721930:intron 40.0%
TAGGTATTCTGCGAACACTA+TGG - chr5_1:19061302-19061321 Msa0721930:intron 40.0%
! AAAAGGGCTCTTGTTATAGG+TGG - chr5_1:19061849-19061868 Msa0721930:intron 40.0%
!!! GATGTTGCTGCTACTTTTAG+TGG - chr5_1:19061891-19061910 Msa0721930:intron 40.0%
! CTGCCTTTAACTTTGATTCC+TGG + chr5_1:19062028-19062047 None:intergenic 40.0%
CAAGAATGCACCTTTATGTG+AGG - chr5_1:19062048-19062067 Msa0721930:CDS 40.0%
!! TCTAGACCCTTTTGGTAGTT+CGG + chr5_1:19062083-19062102 None:intergenic 40.0%
CTAGAAAAAATGCGAGCACT+TGG - chr5_1:19062098-19062117 Msa0721930:intron 40.0%
! ATACCAGTCATTGTTGCTTC+AGG + chr5_1:19062275-19062294 None:intergenic 40.0%
TCCGCTTAACTATCCATTTC+AGG - chr5_1:19062326-19062345 Msa0721930:intron 40.0%
TTAATTTCCTTTCCCGTTCC+TGG - chr5_1:19062409-19062428 Msa0721930:five_prime_UTR 40.0%
!! TGTTGGGTTGGTGAAGATGA+TGG + chr5_1:19057477-19057496 None:intergenic 45.0%
AAGTGGGATCTGGGAATTAC+CGG + chr5_1:19057652-19057671 None:intergenic 45.0%
ATGCACGCTACAGTGAATCA+AGG + chr5_1:19058727-19058746 None:intergenic 45.0%
TTGCAGCTCAGTGAAATCAG+TGG + chr5_1:19058802-19058821 None:intergenic 45.0%
TTTCACTGAGCTGCAAGACA+AGG - chr5_1:19058806-19058825 Msa0721930:CDS 45.0%
AGCTGCAAGACAAGGAACAA+TGG - chr5_1:19058814-19058833 Msa0721930:CDS 45.0%
CGCTTCCCAAATAACATGTC+AGG + chr5_1:19058867-19058886 None:intergenic 45.0%
! GACATGTTATTTGGGAAGCG+TGG - chr5_1:19058867-19058886 Msa0721930:CDS 45.0%
! TTTGGGAAGCGTGGTAAAAG+TGG - chr5_1:19058876-19058895 Msa0721930:intron 45.0%
GAAGCGTGGTAAAAGTGGTT+TGG - chr5_1:19058881-19058900 Msa0721930:intron 45.0%
!! GAAAGAGCGTCTTGGTAAAG+AGG - chr5_1:19058944-19058963 Msa0721930:intron 45.0%
TGTAAGGTTTGAAGGACGGA+CGG + chr5_1:19058992-19059011 None:intergenic 45.0%
GTTGAAATGGGTGGATGCAA+GGG - chr5_1:19059109-19059128 Msa0721930:intron 45.0%
!! TTGTCGTATTGGTTGCAGGT+GGG - chr5_1:19059980-19059999 Msa0721930:intron 45.0%
GCACTCATAACCCTTCCAAA+TGG + chr5_1:19060026-19060045 None:intergenic 45.0%
GCCACTGAGTCTTTCATTCA+TGG - chr5_1:19060044-19060063 Msa0721930:intron 45.0%
! ACAGGCGCACACATATTTTC+TGG + chr5_1:19060147-19060166 None:intergenic 45.0%
! CTGTTTTGCCACCATTGTAG+AGG + chr5_1:19060423-19060442 None:intergenic 45.0%
GTTAGGAGAGAATGTCTCTC+TGG + chr5_1:19060489-19060508 None:intergenic 45.0%
GGAGTCTATGTCCGTATCAA+TGG - chr5_1:19060790-19060809 Msa0721930:CDS 45.0%
TTGTCCAAATTCGGCCCTTT+GGG + chr5_1:19060933-19060952 None:intergenic 45.0%
ATTGTCCAAATTCGGCCCTT+TGG + chr5_1:19060934-19060953 None:intergenic 45.0%
AAAGGGCCGAATTTGGACAA+TGG - chr5_1:19060933-19060952 Msa0721930:intron 45.0%
CGAATTTGGACAATGGTTGC+TGG - chr5_1:19060940-19060959 Msa0721930:intron 45.0%
ATTTGGACAATGGTTGCTGG+GGG - chr5_1:19060943-19060962 Msa0721930:intron 45.0%
!! CTTGGCTTTGCAAATGAGCT+TGG - chr5_1:19061100-19061119 Msa0721930:CDS 45.0%
CTGCAAAACCTCCTCTTCAT+TGG + chr5_1:19061152-19061171 None:intergenic 45.0%
! ATGGTGCTAACGTGAACAAC+GGG - chr5_1:19061252-19061271 Msa0721930:intron 45.0%
GAGAGCCAAACCTACTACAA+TGG - chr5_1:19061573-19061592 Msa0721930:intron 45.0%
GAGTAACAAGAGCCCTTTGT+CGG + chr5_1:19061764-19061783 None:intergenic 45.0%
!!! AAGAGCCCTTTTTTGGCCAT+CGG + chr5_1:19061841-19061860 None:intergenic 45.0%
TGGCATAATTCGGGCACTAA+AGG - chr5_1:19061911-19061930 Msa0721930:intron 45.0%
AATTCGGGCACTAAAGGAGA+AGG - chr5_1:19061917-19061936 Msa0721930:intron 45.0%
AAAAATGCGAGCACTTGGAG+AGG - chr5_1:19062103-19062122 Msa0721930:intron 45.0%
ACAAATTCCAGGAACGGGAA+AGG + chr5_1:19062419-19062438 None:intergenic 45.0%
!!! TTTTTTTTTTTTTGTAATTT+TGG - chr5_1:19061612-19061631 Msa0721930:intron 5.0%
AACCTCATCCATCCTCCTTC+CGG - chr5_1:19057630-19057649 Msa0721930:exon 50.0%
ATCTGGGAATTACCGGAAGG+AGG + chr5_1:19057645-19057664 None:intergenic 50.0%
!!! AGGTGTGCTTTTTCCCACTC+TGG - chr5_1:19058964-19058983 Msa0721930:intron 50.0%
GGTTGAAATGGGTGGATGCA+AGG - chr5_1:19059108-19059127 Msa0721930:intron 50.0%
GATGTAAGAGACACTCCCGT+TGG + chr5_1:19059401-19059420 None:intergenic 50.0%
AGGGAAGGGTTGCAACAAGT+GGG + chr5_1:19059436-19059455 None:intergenic 50.0%
AAGGGAAGGGTTGCAACAAG+TGG + chr5_1:19059437-19059456 None:intergenic 50.0%
! ACTTGTTGCAACCCTTCCCT+TGG - chr5_1:19059436-19059455 Msa0721930:intron 50.0%
GATTGCACAAGTACACCCAG+TGG + chr5_1:19059671-19059690 None:intergenic 50.0%
AGCTCGCCTCTCATATCCAA+AGG + chr5_1:19059839-19059858 None:intergenic 50.0%
!! GACGTTGTCGTATTGGTTGC+AGG - chr5_1:19059976-19059995 Msa0721930:intron 50.0%
!! GTTGTCGTATTGGTTGCAGG+TGG - chr5_1:19059979-19059998 Msa0721930:intron 50.0%
!! TGTCGTATTGGTTGCAGGTG+GGG - chr5_1:19059981-19060000 Msa0721930:intron 50.0%
! AGATTCCTCTAAGGGGTAGG+GGG + chr5_1:19060225-19060244 None:intergenic 50.0%
! CAGATTCCTCTAAGGGGTAG+GGG + chr5_1:19060226-19060245 None:intergenic 50.0%
! CCAGATTCCTCTAAGGGGTA+GGG + chr5_1:19060227-19060246 None:intergenic 50.0%
! ACCAGATTCCTCTAAGGGGT+AGG + chr5_1:19060228-19060247 None:intergenic 50.0%
CGAGCGTACAACCTCTACAA+TGG - chr5_1:19060409-19060428 Msa0721930:intron 50.0%
GCGTACAACCTCTACAATGG+TGG - chr5_1:19060412-19060431 Msa0721930:intron 50.0%
! TCTGGTAGGAGCTTAGCTCT+GGG + chr5_1:19060471-19060490 None:intergenic 50.0%
GGAGAGAATGTCTCTCTGGT+AGG + chr5_1:19060485-19060504 None:intergenic 50.0%
GTTCGCTATATGAAGGAGCG+AGG + chr5_1:19060552-19060571 None:intergenic 50.0%
TGTCTGACACCGACACATGT+CGG + chr5_1:19060711-19060730 None:intergenic 50.0%
!! ACATGTGTCGGTGTCAGACA+CGG - chr5_1:19060711-19060730 Msa0721930:intron 50.0%
TGAACCCAAAGGGCCGAATT+TGG - chr5_1:19060926-19060945 Msa0721930:intron 50.0%
TGTCATCTACGCTGATACGG+TGG - chr5_1:19060975-19060994 Msa0721930:intron 50.0%
GTCATCTACGCTGATACGGT+GGG - chr5_1:19060976-19060995 Msa0721930:intron 50.0%
TAGTGGTGCACCCAATGAAG+AGG - chr5_1:19061138-19061157 Msa0721930:CDS 50.0%
TGGTCCCTAAATGCGTGAAG+CGG - chr5_1:19061411-19061430 Msa0721930:intron 50.0%
ACACCCGCTTCACGCATTTA+GGG + chr5_1:19061418-19061437 None:intergenic 50.0%
!!! AGAGCCCTTTTTTGGCCATC+GGG + chr5_1:19061840-19061859 None:intergenic 50.0%
! AGGGCTCTTGTTATAGGTGG+AGG - chr5_1:19061852-19061871 Msa0721930:intron 50.0%
ATGCACCTTTATGTGAGGCG+AGG - chr5_1:19062053-19062072 Msa0721930:CDS 50.0%
TGCACCTTTATGTGAGGCGA+GGG - chr5_1:19062054-19062073 Msa0721930:CDS 50.0%
CGAGCACTTGGAGAGGAAAT+TGG - chr5_1:19062110-19062129 Msa0721930:intron 50.0%
GGAAATTGGCATCCCGATTG+AGG - chr5_1:19062124-19062143 Msa0721930:intron 50.0%
GGACCTGAAGCAACAATGAC+TGG - chr5_1:19062269-19062288 Msa0721930:intron 50.0%
!! AGGTTGGTGCGATGAGTGGT+TGG + chr5_1:19057615-19057634 None:intergenic 55.0%
!! GATGAGGTTGGTGCGATGAG+TGG + chr5_1:19057619-19057638 None:intergenic 55.0%
GGAAGGAGGATGGATGAGGT+TGG + chr5_1:19057631-19057650 None:intergenic 55.0%
TACCGGAAGGAGGATGGATG+AGG + chr5_1:19057635-19057654 None:intergenic 55.0%
GGGAATTACCGGAAGGAGGA+TGG + chr5_1:19057641-19057660 None:intergenic 55.0%
GGGATCTGGGAATTACCGGA+AGG + chr5_1:19057648-19057667 None:intergenic 55.0%
GGGAAGGGTTGCAACAAGTG+GGG + chr5_1:19059435-19059454 None:intergenic 55.0%
TGTTGCAACCCTTCCCTTGG+AGG - chr5_1:19059439-19059458 Msa0721930:intron 55.0%
GAATACCCCCTACCCCTTAG+AGG - chr5_1:19060217-19060236 Msa0721930:intron 55.0%
CCCTACCCCTTAGAGGAATC+TGG - chr5_1:19060224-19060243 Msa0721930:intron 55.0%
!! TAGGAGCTTAGCTCTGGGCA+GGG + chr5_1:19060466-19060485 None:intergenic 55.0%
CTCTGGTAGGAGCTTAGCTC+TGG + chr5_1:19060472-19060491 None:intergenic 55.0%
GCCTAGTGTCCGACATGTGT+CGG - chr5_1:19060699-19060718 Msa0721930:intron 55.0%
ACCGACACATGTCGGACACT+AGG + chr5_1:19060703-19060722 None:intergenic 55.0%
TGGTGCACCCAATGAAGAGG+AGG - chr5_1:19061141-19061160 Msa0721930:CDS 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr5_1:19061339-19061358 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr5_1:19061338-19061357 Msa0721930:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr5_1:19061339-19061358 Msa0721930:intron 55.0%
GGTCCCTAAATGCGTGAAGC+GGG - chr5_1:19061412-19061431 Msa0721930:intron 55.0%
GACACCCGCTTCACGCATTT+AGG + chr5_1:19061419-19061438 None:intergenic 55.0%
TCAGGGTCAGCAGTTGCACA+TGG + chr5_1:19061738-19061757 None:intergenic 55.0%
TGTGCAACTGCTGACCCTGA+TGG - chr5_1:19061738-19061757 Msa0721930:intron 55.0%
TGACCCTGATGGCCGACAAA+GGG - chr5_1:19061749-19061768 Msa0721930:intron 55.0%
!!! CCTTTTTTGGCCATCGGGGT+CGG + chr5_1:19061835-19061854 None:intergenic 55.0%
CGACCCCGATGGCCAAAAAA+GGG - chr5_1:19061833-19061852 Msa0721930:intron 55.0%
!!! GAGCCCTTTTTTGGCCATCG+GGG + chr5_1:19061839-19061858 None:intergenic 55.0%
GCACCTTTATGTGAGGCGAG+GGG - chr5_1:19062055-19062074 Msa0721930:CDS 55.0%
CACCTTTATGTGAGGCGAGG+GGG - chr5_1:19062056-19062075 Msa0721930:CDS 55.0%
AGGGGGTCCGAACTACCAAA+AGG - chr5_1:19062073-19062092 Msa0721930:exon 55.0%
GGGGGTCCGAACTACCAAAA+GGG - chr5_1:19062074-19062093 Msa0721930:exon 55.0%
!! AGGAGCTTAGCTCTGGGCAG+GGG + chr5_1:19060465-19060484 None:intergenic 60.0%
!! GTAGGAGCTTAGCTCTGGGC+AGG + chr5_1:19060467-19060486 None:intergenic 60.0%
TGGACAATGGTTGCTGGGGG+AGG - chr5_1:19060946-19060965 Msa0721930:intron 60.0%
CTGACCCTGATGGCCGACAA+AGG - chr5_1:19061748-19061767 Msa0721930:intron 60.0%
GAGCCCTTTGTCGGCCATCA+GGG + chr5_1:19061755-19061774 None:intergenic 60.0%
AGAGCCCTTTGTCGGCCATC+AGG + chr5_1:19061756-19061775 None:intergenic 60.0%
CCGACCCCGATGGCCAAAAA+AGG - chr5_1:19061832-19061851 Msa0721930:intron 60.0%
GACCCCCTCGCCTCACATAA+AGG + chr5_1:19062061-19062080 None:intergenic 60.0%
AGGACGGACGGAGCCAGAGT+GGG + chr5_1:19058980-19058999 None:intergenic 65.0%
AAGGACGGACGGAGCCAGAG+TGG + chr5_1:19058981-19059000 None:intergenic 65.0%
TGTGCAACTGCCGACCCCGA+TGG - chr5_1:19061822-19061841 Msa0721930:intron 65.0%
CGGGGTCGGCAGTTGCACAC+TGG + chr5_1:19061821-19061840 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 19057366 19062616 19057366 ID=Msa0721930;Name=Msa0721930
chr5_1 mRNA 19057366 19062616 19057366 ID=Msa0721930-mRNA-1;Parent=Msa0721930;Name=Msa0721930-mRNA-1;_AED=0.12;_eAED=0.12;_QI=297|1|1|1|0.91|0.84|13|282|423
chr5_1 exon 19057366 19057719 19057366 ID=Msa0721930-mRNA-1:exon:7137;Parent=Msa0721930-mRNA-1
chr5_1 exon 19057837 19057953 19057837 ID=Msa0721930-mRNA-1:exon:7136;Parent=Msa0721930-mRNA-1
chr5_1 exon 19058044 19058160 19058044 ID=Msa0721930-mRNA-1:exon:7135;Parent=Msa0721930-mRNA-1
chr5_1 exon 19058790 19058891 19058790 ID=Msa0721930-mRNA-1:exon:7134;Parent=Msa0721930-mRNA-1
chr5_1 exon 19058989 19059084 19058989 ID=Msa0721930-mRNA-1:exon:7133;Parent=Msa0721930-mRNA-1
chr5_1 exon 19059903 19059984 19059903 ID=Msa0721930-mRNA-1:exon:7132;Parent=Msa0721930-mRNA-1
chr5_1 exon 19060091 19060205 19060091 ID=Msa0721930-mRNA-1:exon:7131;Parent=Msa0721930-mRNA-1
chr5_1 exon 19060347 19060398 19060347 ID=Msa0721930-mRNA-1:exon:7130;Parent=Msa0721930-mRNA-1
chr5_1 exon 19060522 19060602 19060522 ID=Msa0721930-mRNA-1:exon:7129;Parent=Msa0721930-mRNA-1
chr5_1 exon 19060712 19060873 19060712 ID=Msa0721930-mRNA-1:exon:7128;Parent=Msa0721930-mRNA-1
chr5_1 exon 19061017 19061193 19061017 ID=Msa0721930-mRNA-1:exon:7127;Parent=Msa0721930-mRNA-1
chr5_1 exon 19061985 19062094 19061985 ID=Msa0721930-mRNA-1:exon:7126;Parent=Msa0721930-mRNA-1
chr5_1 exon 19062331 19062616 19062331 ID=Msa0721930-mRNA-1:exon:7125;Parent=Msa0721930-mRNA-1
chr5_1 five_prime_UTR 19062331 19062616 19062331 ID=Msa0721930-mRNA-1:five_prime_utr;Parent=Msa0721930-mRNA-1
chr5_1 five_prime_UTR 19062084 19062094 19062084 ID=Msa0721930-mRNA-1:five_prime_utr;Parent=Msa0721930-mRNA-1
chr5_1 CDS 19061985 19062083 19061985 ID=Msa0721930-mRNA-1:cds;Parent=Msa0721930-mRNA-1
chr5_1 CDS 19061017 19061193 19061017 ID=Msa0721930-mRNA-1:cds;Parent=Msa0721930-mRNA-1
chr5_1 CDS 19060712 19060873 19060712 ID=Msa0721930-mRNA-1:cds;Parent=Msa0721930-mRNA-1
chr5_1 CDS 19060522 19060602 19060522 ID=Msa0721930-mRNA-1:cds;Parent=Msa0721930-mRNA-1
chr5_1 CDS 19060347 19060398 19060347 ID=Msa0721930-mRNA-1:cds;Parent=Msa0721930-mRNA-1
chr5_1 CDS 19060091 19060205 19060091 ID=Msa0721930-mRNA-1:cds;Parent=Msa0721930-mRNA-1
chr5_1 CDS 19059903 19059984 19059903 ID=Msa0721930-mRNA-1:cds;Parent=Msa0721930-mRNA-1
chr5_1 CDS 19058989 19059084 19058989 ID=Msa0721930-mRNA-1:cds;Parent=Msa0721930-mRNA-1
chr5_1 CDS 19058790 19058891 19058790 ID=Msa0721930-mRNA-1:cds;Parent=Msa0721930-mRNA-1
chr5_1 CDS 19058044 19058160 19058044 ID=Msa0721930-mRNA-1:cds;Parent=Msa0721930-mRNA-1
chr5_1 CDS 19057837 19057953 19057837 ID=Msa0721930-mRNA-1:cds;Parent=Msa0721930-mRNA-1
chr5_1 CDS 19057648 19057719 19057648 ID=Msa0721930-mRNA-1:cds;Parent=Msa0721930-mRNA-1
chr5_1 three_prime_UTR 19057366 19057647 19057366 ID=Msa0721930-mRNA-1:three_prime_utr;Parent=Msa0721930-mRNA-1
Gene Sequence

>Msa0721930

ATGGCACGCAAGAAGATCAGAGAGTATGATTCTAAGAGATTGTTGAAGGAGCACTTTAAGAGACTTTCTGGCAAGGACTTACCTATCAAGTCTGCACAAGTTACGGAAGCCACTGATTTCACTGAGCTGCAAGACAAGGAACAATGGCTTTCTTCTTCTAAATTGGTTGTGAAACCTGACATGTTATTTGGGAAGCGTGGTAAAAGTGGTTTGGTTGCCTTGAATTTGGATTTGGCCCAAGTTGCTTCATTTGTGAAAGAGCGTCTTGGTAAAGAGGTTGAAATGGGTGGATGCAAGGGACCGATAACAACTTTCATTGTTGAACCTTTCATCCCACATAATGAAGAGTATTACCTTAACATTGTCTCTGACAGACTTGGAAACAGCATAAGCTTTTCAGAATGTGGAGGAATCGATATTGAAGAGAATTGGGATAAGGTTAAGACTGTTTTTATTCCAACGGGAGTGTCTCTTACATCAGAAATCATCGCCCCACTTGTTGCAACCCTTCCCTTGGAGATCAAGGGAGAAATTGAGGAATTTCTCAAGGTGATTTTCACTCTTTTTCAAGATCTGGATTTCACTTTCTTAGAGATGAATCCTTTTACATTGGTTGATGGAAAGCCTTATCCTTTGGATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAAGTGGGGTAACATTGAATTTCCATTGCCATTTGGAAGGGTTATGAGTGCCACTGAGTCTTTCATTCATGGATTAGATGAAAAGACAAGTGCATCTCTAAAATTCACTGTGTTGAACCCAAAGGGCCGAATTTGGACAATGGTTGCTGGGGGAGGCGCTAGTGTCATCTACGCTGATACGGTAGGCGATCTTGGCTTTGCAAATGAGCTTGGAAACTATGCAGAATATAGTGGTGCACCCAATGAAGAGGAGGTTTTGCAGTATGCCAGAGTTGTAATTGATTGTGCAACTGCCGACCCCGATGGCCAAAAAAGGGCTCTTGTTATAGGTGGAGGCATAGCTAACTTCACTGATGTTGCTGCTACTTTTAGTGGCATAATTCGGGCACTAAAGGAGAAGGAATCAAAGTTAAAGGCAGCAAGAATGCACCTTTATGTGAGGCGAGGGGGTCCGAACTACCAAAAGGGTCTAGAAAAAATGCGAGCACTTGGAGAGGAAATTGGCATCCCGATTGAGGTTTATGGACCTGAAGCAACAATGACTGGTATATGCAAACAGGCAATACAGTGCATTACTGCTTCCGCTTAA

Protein sequence

>Msa0721930

MARKKIREYDSKRLLKEHFKRLSGKDLPIKSAQVTEATDFTELQDKEQWLSSSKLVVKPDMLFGKRGKSGLVALNLDLAQVASFVKERLGKEVEMGGCKGPITTFIVEPFIPHNEEYYLNIVSDRLGNSISFSECGGIDIEENWDKVKTVFIPTGVSLTSEIIAPLVATLPLEIKGEIEEFLKVIFTLFQDLDFTFLEMNPFTLVDGKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSATESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGFANELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGQKRALVIGGGIANFTDVAATFSGIIRALKEKESKLKAARMHLYVRRGGPNYQKGLEKMRALGEEIGIPIEVYGPEATMTGICKQAIQCITASA*