AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1079780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079780 MtrunA17_Chr7g0265111 96.398 472 17 0 1 472 46 517 0.0 939
Msa1079780 MtrunA17_Chr1g0179901 65.136 479 158 4 1 474 23 497 0.0 641
Msa1079780 MtrunA17_Chr5g0419771 62.422 479 170 5 1 474 43 516 0.0 621
Msa1079780 MtrunA17_Chr7g0265041 50.620 484 222 9 1 475 18 493 2.31e-160 463
Msa1079780 MtrunA17_Chr7g0265101 50.622 482 217 10 1 471 16 487 2.36e-157 456
Msa1079780 MtrunA17_Chr7g0265051 50.939 479 218 10 1 471 16 485 1.13e-156 454
Msa1079780 MtrunA17_Chr4g0011051 48.861 483 235 6 1 476 16 493 1.05e-155 451
Msa1079780 MtrunA17_Chr7g0265151 49.064 481 223 9 1 471 16 484 1.27e-154 448
Msa1079780 MtrunA17_Chr7g0275681 49.057 477 225 7 1 472 19 482 1.54e-154 448
Msa1079780 MtrunA17_Chr5g0419761 48.548 482 234 7 1 475 16 490 1.18e-153 446
Msa1079780 MtrunA17_Chr7g0265141 44.259 479 247 8 1 469 16 484 2.63e-132 391
Msa1079780 MtrunA17_Chr8g0366391 41.615 483 254 12 1 473 16 480 6.39e-120 360
Msa1079780 MtrunA17_Chr4g0044501 40.710 479 261 9 1 473 17 478 3.91e-118 355
Msa1079780 MtrunA17_Chr4g0044511 41.841 478 250 13 1 470 47 504 7.17e-117 352
Msa1079780 MtrunA17_Chr4g0066151 38.750 480 259 13 1 470 25 479 4.94e-111 337
Msa1079780 MtrunA17_Chr7g0243631 38.958 480 276 8 2 474 21 490 1.74e-110 336
Msa1079780 MtrunA17_Chr7g0243681 38.750 480 272 9 2 474 19 483 5.05e-109 332
Msa1079780 MtrunA17_Chr7g0243931 38.750 480 277 9 2 474 25 494 1.67e-106 326
Msa1079780 MtrunA17_Chr7g0235051 38.641 471 249 10 2 469 19 452 3.10e-105 321
Msa1079780 MtrunA17_Chr5g0401851 37.996 479 276 9 1 470 17 483 5.53e-104 319
Msa1079780 MtrunA17_Chr4g0044481 42.512 414 205 7 1 414 34 414 1.34e-103 316
Msa1079780 MtrunA17_Chr7g0243871 37.422 481 274 10 1 474 16 476 1.99e-103 317
Msa1079780 MtrunA17_Chr8g0355221 38.205 479 273 10 1 470 22 486 1.26e-102 316
Msa1079780 MtrunA17_Chr7g0243781 36.458 480 281 8 2 474 17 479 4.42e-102 314
Msa1079780 MtrunA17_Chr4g0066131 37.736 477 262 13 1 467 20 471 4.86e-102 313
Msa1079780 MtrunA17_Chr7g0243771 38.095 483 272 11 2 474 14 479 4.92e-102 314
Msa1079780 MtrunA17_Chr7g0243801 37.888 483 273 11 2 474 15 480 6.42e-102 313
Msa1079780 MtrunA17_Chr4g0060511 38.302 483 278 11 2 474 19 491 8.25e-102 313
Msa1079780 MtrunA17_Chr7g0243861 38.446 489 266 11 2 474 22 491 8.70e-102 313
Msa1079780 MtrunA17_Chr7g0243951 37.888 483 276 11 2 474 19 487 7.74e-101 311
Msa1079780 MtrunA17_Chr5g0416741 38.557 485 274 9 1 476 20 489 2.35e-99 307
Msa1079780 MtrunA17_Chr4g0066221 38.382 482 264 14 2 470 19 480 1.55e-98 305
Msa1079780 MtrunA17_Chr4g0044521 37.924 472 260 10 4 468 19 464 7.52e-98 302
Msa1079780 MtrunA17_Chr6g0463891 38.683 486 274 10 1 476 19 490 8.89e-98 303
Msa1079780 MtrunA17_Chr4g0066261 37.090 488 273 12 1 474 18 485 1.83e-96 299
Msa1079780 MtrunA17_Chr4g0014061 37.684 475 269 12 1 468 16 470 4.66e-94 293
Msa1079780 MtrunA17_Chr1g0165701 36.326 479 279 11 1 470 22 483 1.22e-93 292
Msa1079780 MtrunA17_Chr4g0066281 36.439 483 269 12 2 476 20 472 5.77e-93 290
Msa1079780 MtrunA17_Chr4g0066171 34.917 484 274 14 1 474 28 480 3.31e-91 286
Msa1079780 MtrunA17_Chr7g0243761 36.289 485 252 12 2 474 19 458 2.56e-89 280
Msa1079780 MtrunA17_Chr7g0243851 34.969 489 241 11 2 474 19 446 5.50e-89 279
Msa1079780 MtrunA17_Chr6g0463861 35.091 493 268 15 1 474 18 477 9.64e-89 279
Msa1079780 MtrunA17_Chr4g0066201 35.404 483 274 15 1 474 25 478 3.45e-88 278
Msa1079780 MtrunA17_Chr2g0294931 35.537 484 278 12 1 470 18 481 3.77e-88 278
Msa1079780 MtrunA17_Chr8g0374971 34.765 489 283 14 1 475 19 485 6.21e-85 270
Msa1079780 MtrunA17_Chr2g0294921 35.772 492 274 16 1 474 167 634 5.81e-84 271
Msa1079780 MtrunA17_Chr5g0416821 35.537 484 277 11 2 476 22 479 2.66e-83 265
Msa1079780 MtrunA17_Chr5g0428081 34.836 488 280 15 2 474 19 483 1.22e-82 263
Msa1079780 MtrunA17_Chr8g0374931 33.943 492 283 16 1 474 18 485 3.99e-79 254
Msa1079780 MtrunA17_Chr7g0243811 35.610 410 244 7 8 415 3 394 5.22e-79 251
Msa1079780 MtrunA17_Chr6g0463851 35.091 493 267 17 2 470 19 482 5.34e-78 251
Msa1079780 MtrunA17_Chr8g0374901 33.129 489 291 16 1 476 19 484 5.80e-78 251
Msa1079780 MtrunA17_Chr7g0218311 34.286 490 281 17 1 474 23 487 1.15e-77 251
Msa1079780 MtrunA17_Chr8g0374941 34.711 484 280 13 1 470 956 1417 2.32e-77 263
Msa1079780 MtrunA17_Chr8g0374941 34.402 468 275 13 1 456 18 465 2.93e-75 257
Msa1079780 MtrunA17_Chr8g0374941 33.476 466 274 14 1 452 483 926 5.18e-67 233
Msa1079780 MtrunA17_Chr5g0410941 33.745 486 280 16 1 470 30 489 6.58e-77 249
Msa1079780 MtrunA17_Chr8g0350881 34.639 485 279 16 1 470 19 480 1.67e-75 245
Msa1079780 MtrunA17_Chr2g0294941 37.197 371 199 11 101 455 12 364 2.27e-70 228
Msa1079780 MtrunA17_Chr5g0440421 31.000 500 298 17 1 473 17 496 7.82e-63 212
Msa1079780 MtrunA17_Chr2g0329111 31.621 506 281 19 1 477 13 482 8.43e-63 212
Msa1079780 MtrunA17_Chr7g0243711 44.177 249 130 5 229 474 78 320 1.53e-56 191
Msa1079780 MtrunA17_Chr7g0243611 38.854 314 162 10 115 421 5 295 1.13e-53 182
Msa1079780 MtrunA17_Chr2g0307961 29.091 495 280 17 2 471 21 469 8.80e-52 182
Msa1079780 MtrunA17_Chr6g0464881 28.542 487 277 18 4 471 21 455 2.64e-50 177
Msa1079780 MtrunA17_Chr8g0357361 46.269 201 99 4 199 399 61 252 3.51e-50 172
Msa1079780 MtrunA17_Chr5g0442541 29.116 498 283 16 2 472 13 467 1.61e-49 176
Msa1079780 MtrunA17_Chr8g0361411 29.124 491 277 15 4 474 18 457 3.77e-49 174
Msa1079780 MtrunA17_Chr6g0464871 28.814 472 283 20 2 463 31 459 4.28e-49 174
Msa1079780 MtrunA17_Chr7g0231631 40.357 280 142 6 200 476 8 265 8.75e-49 168
Msa1079780 MtrunA17_Chr6g0464921 28.482 481 284 19 4 470 21 455 1.03e-48 173
Msa1079780 MtrunA17_Chr3g0118691 28.745 494 291 18 4 471 25 483 4.40e-48 172
Msa1079780 MtrunA17_Chr6g0464841 28.936 470 281 20 4 463 21 447 4.18e-47 169
Msa1079780 MtrunA17_Chr2g0278711 27.088 491 301 14 4 471 21 477 4.89e-47 169
Msa1079780 MtrunA17_Chr1g0159551 28.423 482 288 14 2 470 22 459 6.87e-47 168
Msa1079780 MtrunA17_Chr8g0377921 27.926 487 296 15 4 471 14 464 1.03e-46 168
Msa1079780 MtrunA17_Chr3g0079731 29.389 507 272 19 4 468 16 478 1.40e-46 168
Msa1079780 MtrunA17_Chr5g0420801 27.917 480 305 14 2 473 15 461 1.68e-46 167
Msa1079780 MtrunA17_Chr3g0118701 27.935 494 295 17 4 471 25 483 1.93e-46 168
Msa1079780 MtrunA17_Chr5g0429711 27.959 490 281 20 4 470 21 461 2.11e-46 167
Msa1079780 MtrunA17_Chr4g0066141 50.898 167 74 4 312 474 193 355 2.60e-46 164
Msa1079780 MtrunA17_Chr4g0066141 28.042 189 119 6 23 211 9 180 7.66e-15 75.9
Msa1079780 MtrunA17_Chr6g0464861 28.421 475 280 20 2 463 19 446 7.29e-46 166
Msa1079780 MtrunA17_Chr3g0121991 27.515 487 303 14 4 470 89 545 2.11e-45 166
Msa1079780 MtrunA17_Chr5g0412111 30.041 486 286 16 2 470 13 461 7.34e-45 163
Msa1079780 MtrunA17_Chr6g0462531 28.455 492 270 18 1 459 11 453 7.40e-45 163
Msa1079780 MtrunA17_Chr1g0207971 25.316 474 313 15 2 470 16 453 2.00e-44 162
Msa1079780 MtrunA17_Chr8g0347281 27.254 488 277 17 4 463 28 465 2.13e-44 162
Msa1079780 MtrunA17_Chr8g0370941 25.600 500 298 14 4 464 18 482 2.43e-44 162
Msa1079780 MtrunA17_Chr5g0412131 29.046 482 297 14 2 470 20 469 2.44e-44 162
Msa1079780 MtrunA17_Chr5g0431421 27.176 471 299 14 4 471 20 449 2.65e-44 161
Msa1079780 MtrunA17_Chr1g0207951 26.427 473 310 14 2 470 132 570 6.44e-44 166
Msa1079780 MtrunA17_Chr1g0207951 24.842 475 317 16 4 470 666 1108 1.28e-38 150
Msa1079780 MtrunA17_Chr3g0118671 26.815 496 302 18 2 471 14 474 6.99e-44 160
Msa1079780 MtrunA17_Chr3g0122001 28.106 491 295 15 4 470 496 952 8.78e-44 165
Msa1079780 MtrunA17_Chr3g0122001 27.088 491 301 14 4 470 16 473 4.14e-42 160
Msa1079780 MtrunA17_Chr5g0431371 26.539 471 300 14 4 470 20 448 1.20e-43 159
Msa1079780 MtrunA17_Chr3g0078841 27.530 494 301 17 2 471 18 478 1.89e-43 159
Msa1079780 MtrunA17_Chr8g0347271 27.859 481 283 15 4 463 29 466 1.96e-43 159
Msa1079780 MtrunA17_Chr8g0369341 27.423 485 301 16 2 468 15 466 2.47e-43 159
Msa1079780 MtrunA17_Chr1g0173121 28.921 491 277 17 2 470 22 462 2.65e-43 159
Msa1079780 MtrunA17_Chr5g0431361 26.899 487 281 15 4 470 22 453 2.68e-43 159
Msa1079780 MtrunA17_Chr3g0118711 26.210 496 305 17 2 471 21 481 2.74e-43 159
Msa1079780 MtrunA17_Chr3g0118771 26.761 497 301 18 2 471 29 489 5.50e-43 159
Msa1079780 MtrunA17_Chr3g0092641 28.024 496 294 19 2 471 20 478 5.75e-43 158
Msa1079780 MtrunA17_Chr5g0426431 27.846 492 300 19 2 471 20 478 6.15e-43 158
Msa1079780 MtrunA17_Chr2g0302961 26.721 494 296 17 2 470 13 465 6.88e-43 157
Msa1079780 MtrunA17_Chr5g0412101 29.752 484 292 15 2 470 20 470 8.22e-43 157
Msa1079780 MtrunA17_Chr1g0207831 27.349 479 307 19 2 470 16 463 9.56e-43 157
Msa1079780 MtrunA17_Chr5g0448521 27.833 503 281 21 4 472 15 469 1.25e-42 157
Msa1079780 MtrunA17_Chr5g0442521 26.800 500 302 17 2 472 13 477 1.75e-42 157
Msa1079780 MtrunA17_Chr8g0334861 33.333 330 178 7 161 475 166 468 3.06e-42 156
Msa1079780 MtrunA17_Chr8g0336331 27.733 494 299 17 2 471 18 477 3.81e-42 156
Msa1079780 MtrunA17_Chr7g0232411 34.062 320 166 12 163 466 171 461 4.51e-42 155
Msa1079780 MtrunA17_Chr8g0339451 34.520 281 145 7 199 463 199 456 4.74e-42 155
Msa1079780 MtrunA17_Chr3g0098111 26.240 484 311 16 2 470 17 469 4.78e-42 155
Msa1079780 MtrunA17_Chr5g0442581 26.969 508 290 18 3 471 12 477 6.31e-42 156
Msa1079780 MtrunA17_Chr2g0302991 27.143 490 292 18 4 470 15 462 6.43e-42 155
Msa1079780 MtrunA17_Chr6g0462551 27.879 495 271 17 4 463 14 457 7.10e-42 155
Msa1079780 MtrunA17_Chr6g0486251 34.062 320 171 10 158 466 170 460 7.69e-42 155
Msa1079780 MtrunA17_Chr6g0486201 34.062 320 171 10 158 466 170 460 7.69e-42 155
Msa1079780 MtrunA17_Chr8g0339601 34.875 281 144 7 199 463 66 323 7.87e-42 152
Msa1079780 MtrunA17_Chr4g0050341 29.341 501 279 23 2 467 27 487 8.52e-42 155
Msa1079780 MtrunA17_Chr8g0339631 28.319 452 255 14 56 466 41 464 1.39e-41 154
Msa1079780 MtrunA17_Chr7g0243911 40.704 199 113 4 259 455 20 215 1.62e-41 147
Msa1079780 MtrunA17_Chr5g0414331 28.125 480 291 17 2 472 21 455 1.81e-41 154
Msa1079780 MtrunA17_Chr5g0429681 27.178 482 302 16 4 471 54 500 2.75e-41 154
Msa1079780 MtrunA17_Chr8g0373301 26.923 494 286 15 16 466 1 462 4.28e-41 153
Msa1079780 MtrunA17_Chr6g0454341 26.721 494 301 18 4 471 20 478 4.44e-41 153
Msa1079780 MtrunA17_Chr6g0462571 27.536 483 285 16 4 463 14 454 7.51e-41 152
Msa1079780 MtrunA17_Chr6g0454301 27.435 503 286 21 4 471 273 731 1.18e-40 155
Msa1079780 MtrunA17_Chr6g0454301 31.600 250 139 9 226 469 5 228 8.90e-26 111
Msa1079780 MtrunA17_Chr6g0454361 29.897 388 221 12 105 471 124 481 1.88e-40 151
Msa1079780 MtrunA17_Chr6g0454401 27.345 501 292 20 4 471 20 481 3.43e-40 150
Msa1079780 MtrunA17_Chr5g0442601 27.968 497 297 19 4 472 414 877 4.61e-40 154
Msa1079780 MtrunA17_Chr5g0442601 29.180 305 169 9 105 396 63 333 6.98e-26 111
Msa1079780 MtrunA17_Chr1g0207981 28.067 481 307 18 2 471 21 473 4.67e-40 150
Msa1079780 MtrunA17_Chr7g0232391 35.714 280 141 9 201 466 207 461 5.62e-40 150
Msa1079780 MtrunA17_Chr8g0336651 36.042 283 143 6 197 464 978 1237 6.58e-40 154
Msa1079780 MtrunA17_Chr8g0336651 32.500 280 149 9 201 466 207 460 9.98e-34 135
Msa1079780 MtrunA17_Chr8g0336651 32.414 290 148 8 179 466 527 770 5.76e-33 133
Msa1079780 MtrunA17_Chr5g0409591 27.139 409 226 13 88 445 75 462 7.24e-40 150
Msa1079780 MtrunA17_Chr4g0032331 27.366 486 290 16 4 475 18 454 7.47e-40 149
Msa1079780 MtrunA17_Chr5g0414321 28.099 484 286 21 2 472 19 453 8.46e-40 149
Msa1079780 MtrunA17_Chr5g0431401 26.383 470 302 14 4 470 20 448 8.71e-40 149
Msa1079780 MtrunA17_Chr8g0339461 33.216 283 148 7 199 464 207 465 9.84e-40 149
Msa1079780 MtrunA17_Chr5g0442511 25.253 495 282 14 4 470 59 493 2.03e-39 149
Msa1079780 MtrunA17_Chr8g0359821 25.100 502 311 15 4 477 20 484 2.29e-39 148
Msa1079780 MtrunA17_Chr6g0454321 26.987 478 298 17 4 460 20 467 3.18e-39 150
Msa1079780 MtrunA17_Chr5g0442561 26.087 506 295 19 2 472 13 474 3.41e-39 147
Msa1079780 MtrunA17_Chr6g0459311 28.800 500 270 23 2 466 19 467 4.42e-39 147
Msa1079780 MtrunA17_Chr8g0335161 34.532 278 144 8 201 466 211 462 4.65e-39 147
Msa1079780 MtrunA17_Chr5g0442491 27.579 504 292 19 3 472 12 476 6.27e-39 147
Msa1079780 MtrunA17_Chr3g0112761 27.950 483 287 17 4 473 18 452 7.14e-39 146
Msa1079780 MtrunA17_Chr5g0431441 25.934 482 300 15 4 471 28 466 1.03e-38 146
Msa1079780 MtrunA17_Chr8g0335141 33.681 288 151 9 193 466 203 464 1.34e-38 146
Msa1079780 MtrunA17_Chr6g0449931 27.254 488 286 18 20 466 4 463 1.88e-38 145
Msa1079780 MtrunA17_Chr8g0336691 32.680 306 169 9 175 466 1093 1375 1.94e-38 149
Msa1079780 MtrunA17_Chr8g0336691 31.034 319 182 8 161 466 176 469 4.61e-36 142
Msa1079780 MtrunA17_Chr8g0336691 34.211 266 133 7 201 464 681 906 8.99e-32 129
Msa1079780 MtrunA17_Chr6g0453951 25.794 504 299 18 2 471 65 527 2.90e-38 146
Msa1079780 MtrunA17_Chr1g0161351 25.577 477 319 16 4 470 47 497 3.20e-38 145
Msa1079780 MtrunA17_Chr3g0118721 30.976 297 177 6 175 471 22 290 4.05e-38 140
Msa1079780 MtrunA17_Chr8g0365811 24.638 483 322 17 2 470 503 957 4.67e-38 148
Msa1079780 MtrunA17_Chr8g0365811 24.744 489 318 18 2 470 17 475 4.06e-34 136
Msa1079780 MtrunA17_Chr1g0207861 26.195 481 315 19 2 470 16 468 5.99e-38 144
Msa1079780 MtrunA17_Chr6g0462521 36.466 266 135 7 201 459 201 439 6.52e-38 144
Msa1079780 MtrunA17_Chr6g0462541 32.734 278 143 6 201 466 214 459 6.56e-38 144
Msa1079780 MtrunA17_Chr6g0454121 26.637 443 257 16 63 471 71 479 7.03e-38 144
Msa1079780 MtrunA17_Chr8g0361371 27.219 507 274 18 3 467 14 467 8.30e-38 144
Msa1079780 MtrunA17_Chr8g0334851 30.341 323 179 9 161 466 172 465 9.55e-38 144
Msa1079780 MtrunA17_Chr3g0112771 26.186 485 299 17 4 477 22 458 1.20e-37 143
Msa1079780 MtrunA17_Chr6g0454331 26.693 502 307 17 4 477 17 485 1.23e-37 144
Msa1079780 MtrunA17_Chr7g0232401 32.803 314 167 12 161 459 172 456 3.19e-37 142
Msa1079780 MtrunA17_Chr7g0217881 27.368 380 233 12 100 471 118 462 1.21e-36 140
Msa1079780 MtrunA17_Chr6g0454141 25.553 497 309 18 2 471 18 480 1.44e-36 140
Msa1079780 MtrunA17_Chr6g0454261 25.100 502 313 17 4 477 20 486 1.86e-36 140
Msa1079780 MtrunA17_Chr8g0339441 37.037 216 112 4 261 463 218 422 2.25e-36 139
Msa1079780 MtrunA17_Chr8g0377941 30.721 319 187 9 158 472 175 463 2.44e-36 140
Msa1079780 MtrunA17_Chr7g0275511 27.181 493 283 23 4 466 25 471 3.11e-36 139
Msa1079780 MtrunA17_Chr6g0454151 27.143 420 248 16 76 471 93 478 3.49e-36 139
Msa1079780 MtrunA17_Chr6g0454201 27.054 499 295 18 4 471 21 481 4.21e-36 139
Msa1079780 MtrunA17_Chr7g0249981 25.577 477 304 15 4 472 35 468 4.47e-36 139
Msa1079780 MtrunA17_Chr4g0053501 26.337 486 299 19 4 471 21 465 5.27e-36 139
Msa1079780 MtrunA17_Chr6g0454351 26.518 494 287 20 4 471 22 465 7.09e-36 138
Msa1079780 MtrunA17_Chr6g0452771 28.442 443 250 17 63 471 71 480 1.04e-35 138
Msa1079780 MtrunA17_Chr8g0380531 28.392 479 276 18 4 463 20 450 1.58e-35 137
Msa1079780 MtrunA17_Chr7g0232331 33.218 289 155 9 201 475 207 471 1.77e-35 137
Msa1079780 MtrunA17_Chr7g0232341 36.396 283 136 11 201 466 207 462 2.26e-35 137
Msa1079780 MtrunA17_Chr5g0401721 24.691 486 322 13 2 472 16 472 2.88e-35 137
Msa1079780 MtrunA17_Chr7g0218791 26.667 465 285 17 4 457 15 434 4.45e-35 135
Msa1079780 MtrunA17_Chr7g0232311 31.481 324 173 11 161 467 169 460 4.49e-35 136
Msa1079780 MtrunA17_Chr6g0454131 26.555 418 251 15 78 471 94 479 5.51e-35 136
Msa1079780 MtrunA17_Chr6g0454191 25.251 499 305 17 4 471 20 481 1.77e-34 135
Msa1079780 MtrunA17_Chr6g0454181 24.494 494 314 16 4 471 20 480 2.13e-34 134
Msa1079780 MtrunA17_Chr8g0382021 30.986 284 167 9 196 470 225 488 2.25e-34 134
Msa1079780 MtrunA17_Chr8g0336741 32.130 277 154 8 201 466 214 467 3.78e-34 134
Msa1079780 MtrunA17_Chr1g0153451 32.143 280 149 8 201 466 207 459 4.90e-34 133
Msa1079780 MtrunA17_Chr8g0334831 26.602 515 276 18 3 467 13 475 6.36e-34 133
Msa1079780 MtrunA17_Chr7g0218821 36.715 207 111 6 261 467 261 447 6.69e-34 132
Msa1079780 MtrunA17_Chr1g0207931 29.304 273 178 6 198 470 240 497 6.90e-34 133
Msa1079780 MtrunA17_Chr4g0053321 27.515 487 292 18 4 471 36 480 7.04e-34 133
Msa1079780 MtrunA17_Chr7g0218831 25.311 482 281 16 4 467 16 436 7.35e-34 132
Msa1079780 MtrunA17_Chr8g0336731 29.394 330 179 12 161 467 189 487 7.87e-34 133
Msa1079780 MtrunA17_Chr6g0454211 28.062 449 256 17 63 477 358 773 8.39e-34 135
Msa1079780 MtrunA17_Chr6g0454211 28.899 218 114 8 158 373 58 236 1.37e-14 76.6
Msa1079780 MtrunA17_Chr7g0241801 27.093 454 251 18 1 442 16 401 1.34e-33 131
Msa1079780 MtrunA17_Chr7g0218841 24.948 481 285 17 4 467 16 437 1.81e-33 131
Msa1079780 MtrunA17_Chr1g0153461 37.037 216 115 5 261 466 4 208 2.88e-33 125
Msa1079780 MtrunA17_Chr5g0403641 33.103 290 150 9 201 469 235 501 3.81e-33 131
Msa1079780 MtrunA17_Chr7g0241781 27.152 453 275 14 1 447 16 419 4.04e-33 130
Msa1079780 MtrunA17_Chr3g0118751 25.102 490 289 18 2 471 14 445 4.54e-33 130
Msa1079780 MtrunA17_Chr6g0454291 28.311 438 257 18 63 471 68 477 4.82e-33 130
Msa1079780 MtrunA17_Chr3g0106231 24.160 476 304 14 4 472 28 453 5.92e-33 130
Msa1079780 MtrunA17_Chr7g0249931 24.691 486 305 13 2 473 48 486 6.19e-33 130
Msa1079780 MtrunA17_Chr3g0118661 25.151 497 304 16 2 469 21 478 8.27e-33 130
Msa1079780 MtrunA17_Chr7g0250001 25.859 495 282 19 2 471 14 448 1.22e-32 129
Msa1079780 MtrunA17_Chr4g0042891 28.333 480 296 17 4 468 17 463 1.43e-32 129
Msa1079780 MtrunA17_Chr6g0453961 25.253 495 310 19 4 471 29 490 1.74e-32 129
Msa1079780 MtrunA17_Chr3g0079711 35.859 198 105 3 287 472 3 190 1.32e-31 120
Msa1079780 MtrunA17_Chr4g0072761 36.538 208 111 5 261 468 264 450 2.91e-31 125
Msa1079780 MtrunA17_Chr8g0367221 25.316 474 292 12 1 451 1295 1729 3.13e-31 128
Msa1079780 MtrunA17_Chr8g0367221 26.368 402 259 13 1 388 805 1183 9.41e-29 120
Msa1079780 MtrunA17_Chr8g0367221 24.631 406 260 12 1 388 19 396 1.05e-27 117
Msa1079780 MtrunA17_Chr5g0423981 25.780 481 289 19 4 471 20 445 4.19e-31 124
Msa1079780 MtrunA17_Chr7g0249961 32.870 216 126 6 258 473 66 262 6.92e-31 120
Msa1079780 MtrunA17_Chr5g0393591 22.737 475 297 13 2 470 25 435 7.67e-31 124
Msa1079780 MtrunA17_Chr8g0336321 25.935 401 265 11 2 389 15 396 9.74e-31 124
Msa1079780 MtrunA17_Chr8g0336251 25.935 401 265 11 2 389 15 396 9.93e-31 124
Msa1079780 MtrunA17_Chr6g0454251 29.676 401 228 18 4 373 17 394 1.06e-30 122
Msa1079780 MtrunA17_Chr6g0454221 30.769 247 140 6 229 469 8 229 1.85e-30 120
Msa1079780 MtrunA17_Chr5g0426401 30.935 278 165 10 201 474 60 314 2.70e-30 120
Msa1079780 MtrunA17_Chr7g0218811 33.333 207 118 6 261 467 260 446 3.30e-30 122
Msa1079780 MtrunA17_Chr5g0432731 26.415 318 196 7 168 473 8 299 3.93e-30 119
Msa1079780 MtrunA17_Chr6g0454271 29.537 281 169 8 201 477 38 293 7.86e-30 118
Msa1079780 MtrunA17_Chr4g0072771 26.708 483 280 18 5 468 36 463 2.81e-29 119
Msa1079780 MtrunA17_Chr4g0042931 28.601 479 272 21 4 457 17 450 5.46e-29 119
Msa1079780 MtrunA17_Chr7g0232351 36.404 228 110 9 165 373 167 378 1.08e-28 116
Msa1079780 MtrunA17_Chr6g0464091 27.650 434 228 17 1 394 25 412 1.44e-28 117
Msa1079780 MtrunA17_Chr3g0106251 27.941 272 167 6 202 472 52 295 4.46e-28 114
Msa1079780 MtrunA17_Chr6g0454371 31.959 194 102 5 284 471 2 171 4.82e-28 109
Msa1079780 MtrunA17_Chr6g0454171 28.374 289 160 10 191 471 61 310 1.04e-27 112
Msa1079780 MtrunA17_Chr1g0196851 26.068 468 274 19 1 445 56 474 4.35e-27 114
Msa1079780 MtrunA17_Chr7g0243921 33.721 172 111 2 2 173 48 216 6.24e-27 108
Msa1079780 MtrunA17_Chr5g0448551 27.938 451 255 23 2 434 15 413 6.38e-26 110
Msa1079780 MtrunA17_Chr4g0029131 25.054 463 282 16 1 445 19 434 2.70e-25 109
Msa1079780 MtrunA17_Chr4g0029151 24.197 467 281 16 1 445 27 442 3.46e-25 107
Msa1079780 MtrunA17_Chr6g0466831 26.087 414 253 12 1 394 25 405 6.59e-25 107
Msa1079780 MtrunA17_Chr4g0040711 26.613 496 289 21 1 472 15 459 7.09e-25 107
Msa1079780 MtrunA17_Chr4g0040691 25.957 470 278 17 1 448 15 436 9.23e-25 106
Msa1079780 MtrunA17_Chr6g0466841 25.604 414 255 12 1 394 25 405 1.54e-24 106
Msa1079780 MtrunA17_Chr6g0482061 26.978 493 276 20 4 458 21 467 2.76e-24 105
Msa1079780 MtrunA17_Chr8g0355011 25.974 385 220 14 100 477 42 368 1.29e-23 102
Msa1079780 MtrunA17_Chr7g0243731 57.746 71 30 0 331 401 6 76 1.78e-23 94.0
Msa1079780 MtrunA17_Chr2g0302851 26.277 411 256 16 1 394 23 403 2.56e-23 102
Msa1079780 MtrunA17_Chr4g0069611 24.411 467 286 16 1 450 22 438 3.49e-23 102
Msa1079780 MtrunA17_Chr2g0278721 25.874 429 249 16 1 394 524 918 3.81e-23 103
Msa1079780 MtrunA17_Chr2g0278721 25.123 406 258 15 1 390 22 397 1.35e-22 101
Msa1079780 MtrunA17_Chr4g0039881 23.990 421 247 15 4 394 2 379 8.80e-23 100
Msa1079780 MtrunA17_Chr2g0283041 25.059 427 281 12 1 417 14 411 2.36e-22 99.4
Msa1079780 MtrunA17_Chr5g0431431 27.966 236 138 5 161 391 116 324 3.10e-22 97.8
Msa1079780 MtrunA17_Chr2g0278741 24.892 462 286 18 1 444 104 522 6.43e-22 99.0
Msa1079780 MtrunA17_Chr8g0336261 34.591 159 74 5 284 435 2 137 7.08e-22 91.3
Msa1079780 MtrunA17_Chr8g0337381 39.259 135 67 4 333 466 1 121 7.65e-22 91.3
Msa1079780 MtrunA17_Chr3g0092031 31.841 201 101 6 259 450 2 175 2.41e-20 89.0
Msa1079780 MtrunA17_Chr5g0427571 29.592 196 120 4 202 389 45 230 4.40e-20 90.9
Msa1079780 MtrunA17_Chr1g0207881 32.353 170 92 7 306 470 233 384 4.78e-20 92.0
Msa1079780 MtrunA17_Chr7g0272701 31.724 145 89 3 69 207 11 151 2.27e-19 84.7
Msa1079780 MtrunA17_Chr2g0319731 26.105 475 277 21 1 453 32 454 5.32e-19 89.4
Msa1079780 MtrunA17_Chr2g0319801 36.979 192 107 6 263 453 259 437 4.09e-18 86.7
Msa1079780 MtrunA17_Chr7g0243721 38.686 137 77 4 171 306 5 135 1.27e-17 79.7
Msa1079780 MtrunA17_Chr2g0321331 44.444 99 54 1 268 366 91 188 2.13e-17 82.4
Msa1079780 MtrunA17_Chr2g0319761 24.313 473 293 18 1 455 15 440 8.85e-17 82.4
Msa1079780 MtrunA17_Chr2g0319791 26.154 455 293 17 1 448 15 433 2.82e-16 80.9
Msa1079780 MtrunA17_Chr6g0454231 32.867 143 74 3 335 473 97 221 3.90e-16 80.9
Msa1079780 MtrunA17_Chr7g0231651 27.841 176 122 3 2 173 22 196 1.41e-14 72.8
Msa1079780 MtrunA17_Chr2g0319751 30.315 254 147 7 197 448 685 910 1.88e-14 76.3
Msa1079780 MtrunA17_Chr2g0319751 24.524 473 254 22 1 448 15 409 4.00e-13 72.0
Msa1079780 MtrunA17_Chr5g0442501 22.082 317 206 10 4 307 15 303 1.34e-13 71.6
Msa1079780 MtrunA17_Chr7g0265071 51.613 62 29 1 414 474 1 62 3.02e-12 62.0
Msa1079780 MtrunA17_Chr4g0066241 36.364 121 62 5 156 275 43 149 2.10e-11 62.4
Msa1079780 MtrunA17_Chr6g0453981 29.851 134 87 4 201 333 101 228 4.61e-11 62.8
Msa1079780 MtrunA17_Chr4g0066231 38.462 78 47 1 372 449 1 77 7.59e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079780 AT2G36780.1 47.292 480 237 5 1 473 21 491 7.86e-158 457
Msa1079780 AT2G36800.1 47.193 481 237 6 1 473 19 490 3.20e-154 448
Msa1079780 AT2G36770.1 46.639 476 242 5 1 471 21 489 1.06e-153 446
Msa1079780 AT2G36760.1 46.849 476 241 4 1 471 21 489 2.17e-153 446
Msa1079780 AT2G36750.1 45.000 480 249 4 1 474 17 487 2.64e-149 435
Msa1079780 AT2G36790.1 47.182 479 239 6 1 473 20 490 4.77e-146 427
Msa1079780 AT3G53160.1 45.322 481 243 9 1 472 15 484 1.22e-142 418
Msa1079780 AT3G53150.1 45.287 488 246 8 1 472 29 511 4.49e-140 412
Msa1079780 AT2G15490.3 40.779 488 247 12 1 470 14 477 4.83e-114 345
Msa1079780 AT2G15480.1 40.246 487 251 12 1 470 17 480 1.66e-113 343
Msa1079780 AT2G15490.1 40.733 491 246 13 1 470 14 480 2.74e-113 343
Msa1079780 AT2G15480.2 39.718 496 251 12 1 470 17 490 5.90e-113 342
Msa1079780 AT4G34131.1 42.739 482 245 13 1 470 17 479 2.43e-111 338
Msa1079780 AT4G34138.1 40.125 481 257 12 1 470 18 478 5.28e-107 327
Msa1079780 AT4G34135.1 42.149 484 246 14 1 470 18 481 7.00e-104 318
Msa1079780 AT5G14860.1 33.603 494 271 18 1 470 15 475 8.56e-67 223
Msa1079780 AT1G10400.1 32.033 487 276 20 1 470 14 462 1.47e-64 216
Msa1079780 AT2G16890.2 31.762 488 279 19 1 470 16 467 1.13e-61 209
Msa1079780 AT5G12890.1 31.622 487 272 18 1 459 17 470 4.53e-61 207
Msa1079780 AT4G34135.2 38.154 325 179 9 1 313 18 332 8.01e-57 192
Msa1079780 AT2G16890.3 32.771 415 234 16 1 398 16 402 1.35e-52 183
Msa1079780 AT1G73880.1 29.400 483 295 15 2 473 22 469 2.80e-51 181
Msa1079780 AT1G06000.1 28.247 485 259 15 4 470 20 433 4.54e-50 177
Msa1079780 AT5G03490.1 27.122 483 291 12 2 470 27 462 9.12e-49 174
Msa1079780 AT1G22400.1 29.459 499 286 17 2 471 21 482 9.32e-48 172
Msa1079780 AT2G30150.1 28.092 477 286 16 4 470 7 436 1.83e-47 170
Msa1079780 AT1G24100.1 31.828 487 263 17 4 470 21 458 3.55e-47 169
Msa1079780 AT2G30150.2 28.092 477 286 16 4 470 23 452 4.03e-47 169
Msa1079780 AT1G07260.1 29.218 486 301 15 2 471 14 472 4.96e-47 169
Msa1079780 AT2G31750.1 30.480 479 281 16 4 471 18 455 2.83e-46 167
Msa1079780 AT2G31750.2 30.480 479 281 16 4 471 18 455 6.36e-46 167
Msa1079780 AT1G22340.1 28.484 488 305 14 2 471 21 482 7.10e-46 167
Msa1079780 AT1G22360.1 29.600 500 283 19 2 471 18 478 7.58e-46 166
Msa1079780 AT1G51210.1 30.123 405 240 13 2 398 28 397 1.04e-45 165
Msa1079780 AT1G22380.1 28.543 494 296 18 2 471 21 481 1.29e-45 166
Msa1079780 AT1G78270.1 27.010 485 315 11 2 471 21 481 1.35e-45 166
Msa1079780 AT2G18570.1 29.065 492 270 21 4 463 15 459 4.14e-45 164
Msa1079780 AT3G16520.3 28.075 374 229 10 106 469 115 458 5.21e-45 164
Msa1079780 AT2G29740.1 30.200 500 275 21 3 470 17 474 7.25e-45 164
Msa1079780 AT2G29730.1 27.600 500 285 19 4 474 15 466 5.48e-44 161
Msa1079780 AT1G07250.1 34.688 320 175 11 158 472 184 474 1.40e-43 160
Msa1079780 AT3G11340.1 28.131 487 275 18 4 473 19 447 1.41e-43 159
Msa1079780 AT2G43840.2 29.106 481 276 20 4 470 17 446 8.27e-43 157
Msa1079780 AT2G43840.1 29.106 481 276 20 4 470 17 446 1.51e-42 157
Msa1079780 AT5G49690.1 28.632 468 263 17 1 448 17 433 3.04e-42 156
Msa1079780 AT5G26310.1 25.761 493 284 17 4 463 17 460 3.59e-42 156
Msa1079780 AT5G05870.1 28.364 483 284 18 4 470 18 454 7.87e-42 155
Msa1079780 AT2G29710.1 32.258 310 180 8 171 471 175 463 1.18e-41 155
Msa1079780 AT1G01420.2 26.804 485 287 14 4 463 21 462 2.64e-41 154
Msa1079780 AT1G01420.1 26.804 485 287 14 4 463 18 459 2.89e-41 154
Msa1079780 AT4G01070.1 25.610 492 291 14 4 466 18 463 3.97e-41 154
Msa1079780 AT3G16520.1 27.855 359 219 10 107 455 116 444 4.33e-41 153
Msa1079780 AT3G16520.2 27.778 360 220 10 106 455 115 444 4.81e-41 152
Msa1079780 AT1G22360.2 27.655 499 282 17 2 471 18 466 4.81e-41 153
Msa1079780 AT2G43820.1 28.870 478 281 20 4 470 17 446 7.45e-41 152
Msa1079780 AT4G15480.1 26.598 485 303 19 4 470 29 478 1.84e-40 152
Msa1079780 AT4G14090.1 26.971 482 290 17 2 469 21 454 2.88e-40 150
Msa1079780 AT1G05560.1 26.087 483 299 15 2 470 13 451 4.59e-40 150
Msa1079780 AT2G30140.1 25.678 479 298 14 4 472 23 453 8.15e-40 149
Msa1079780 AT3G02100.1 27.984 486 280 16 2 467 21 456 8.64e-40 149
Msa1079780 AT1G05560.2 26.087 483 299 15 2 470 63 501 9.56e-40 150
Msa1079780 AT2G30140.2 25.053 475 305 12 4 472 23 452 1.01e-39 149
Msa1079780 AT4G15550.1 28.198 383 230 13 101 469 121 472 1.47e-39 149
Msa1079780 AT1G22370.2 27.755 490 300 16 2 471 21 476 1.85e-39 149
Msa1079780 AT1G05675.1 28.085 470 292 12 2 463 14 445 2.01e-39 148
Msa1079780 AT4G15260.1 34.155 284 154 8 201 472 94 356 2.16e-39 146
Msa1079780 AT1G05530.1 29.333 375 230 12 105 471 108 455 2.51e-39 148
Msa1079780 AT1G05680.1 27.350 468 294 14 4 463 16 445 1.02e-38 146
Msa1079780 AT4G15280.1 28.056 499 292 21 4 472 14 475 2.04e-38 146
Msa1079780 AT4G15280.2 28.056 499 292 21 4 472 46 507 4.55e-38 145
Msa1079780 AT3G21790.1 27.163 497 300 19 4 470 14 478 7.96e-38 144
Msa1079780 AT3G21560.1 24.896 482 316 15 4 470 22 472 8.32e-38 144
Msa1079780 AT2G29750.1 31.627 332 189 10 147 472 176 475 1.45e-37 144
Msa1079780 AT5G05860.1 27.515 487 281 15 4 473 19 450 1.78e-37 143
Msa1079780 AT1G07240.1 24.641 487 323 13 4 471 15 476 5.09e-37 142
Msa1079780 AT3G50740.1 28.866 291 159 8 201 469 208 472 8.02e-37 142
Msa1079780 AT3G21760.1 27.202 511 284 21 4 470 14 480 8.19e-37 142
Msa1079780 AT3G21800.1 33.096 281 160 9 201 470 212 475 1.18e-36 141
Msa1079780 AT1G01390.1 26.721 494 277 17 4 463 18 460 2.74e-36 140
Msa1079780 AT1G01390.2 26.721 494 277 17 4 463 35 477 2.89e-36 140
Msa1079780 AT3G46670.1 25.941 478 285 14 2 463 17 441 2.13e-35 137
Msa1079780 AT2G18560.1 26.904 394 243 11 88 463 3 369 2.69e-35 135
Msa1079780 AT5G59590.1 25.370 473 294 15 2 463 18 442 3.17e-35 137
Msa1079780 AT5G66690.1 24.510 510 298 17 4 474 17 478 6.17e-35 136
Msa1079780 AT5G17030.1 28.986 276 163 8 199 473 215 458 1.48e-34 135
Msa1079780 AT2G31790.1 27.349 479 282 17 4 463 18 449 1.75e-34 135
Msa1079780 AT4G15490.1 24.082 490 310 19 4 471 18 467 2.71e-34 134
Msa1079780 AT3G46690.1 26.360 478 294 15 2 468 17 447 3.20e-34 134
Msa1079780 AT2G23250.1 26.971 482 283 18 4 470 8 435 3.65e-34 133
Msa1079780 AT3G46680.1 25.514 486 294 16 2 473 17 448 1.24e-33 132
Msa1079780 AT2G23260.1 27.463 477 293 19 4 470 20 453 1.25e-33 132
Msa1079780 AT3G21780.1 27.062 388 233 13 108 472 110 470 1.37e-33 132
Msa1079780 AT4G15500.1 25.000 492 310 20 4 477 19 469 1.64e-33 132
Msa1079780 AT3G46660.1 26.667 495 282 17 2 473 22 458 6.39e-33 130
Msa1079780 AT5G59580.1 24.733 469 301 13 2 463 17 440 1.56e-32 129
Msa1079780 AT3G46650.1 24.573 468 287 13 2 463 18 425 3.01e-32 128
Msa1079780 AT3G21750.1 25.243 515 281 17 4 472 14 470 3.80e-32 128
Msa1079780 AT5G65550.1 25.679 405 241 9 1 381 16 384 6.08e-32 127
Msa1079780 AT4G36770.1 25.309 486 274 16 4 453 14 446 6.11e-32 127
Msa1079780 AT5G05900.1 25.205 488 286 15 4 470 18 447 1.91e-31 126
Msa1079780 AT3G46700.1 26.260 377 232 11 105 470 103 444 4.60e-31 125
Msa1079780 AT2G22590.1 24.145 468 304 13 1 451 22 455 1.14e-30 124
Msa1079780 AT5G05880.1 26.971 482 286 18 4 470 18 448 1.23e-30 124
Msa1079780 AT1G22370.1 29.348 276 175 6 197 471 50 306 3.77e-30 119
Msa1079780 AT5G05890.1 26.598 485 288 17 4 470 18 452 4.69e-30 122
Msa1079780 AT5G17040.2 28.148 270 163 7 202 471 100 338 5.39e-30 120
Msa1079780 AT5G17050.1 29.643 280 154 9 199 473 218 459 7.04e-30 122
Msa1079780 AT5G17040.1 28.148 270 163 7 202 471 202 440 2.76e-29 120
Msa1079780 AT2G15490.2 36.066 183 95 5 1 167 14 190 4.28e-29 115
Msa1079780 AT2G26480.1 23.493 481 303 15 4 471 18 446 6.21e-29 119
Msa1079780 AT3G55700.1 30.035 283 166 8 197 477 205 457 9.31e-29 118
Msa1079780 AT5G38040.1 23.868 486 299 15 2 470 18 449 9.71e-29 118
Msa1079780 AT5G38010.1 24.797 492 291 17 2 470 18 453 1.09e-28 118
Msa1079780 AT2G36970.1 23.014 491 314 17 4 470 20 470 4.41e-27 114
Msa1079780 AT3G46720.1 26.862 376 219 11 105 468 107 438 6.45e-27 113
Msa1079780 AT2G28080.1 24.899 494 308 19 4 477 28 478 1.49e-26 112
Msa1079780 AT1G64910.1 24.215 446 288 13 1 437 13 417 1.91e-26 112
Msa1079780 AT3G55710.1 27.907 301 186 8 179 477 190 461 2.64e-26 111
Msa1079780 AT1G30530.1 23.614 487 295 17 4 471 23 451 7.51e-25 107
Msa1079780 AT5G53990.1 24.667 450 279 14 1 441 13 411 2.40e-24 105
Msa1079780 AT2G16890.4 29.560 318 181 15 1 299 16 309 3.71e-24 103
Msa1079780 AT2G16890.1 29.560 318 181 15 1 299 16 309 3.71e-24 103
Msa1079780 AT4G27570.1 24.017 483 307 16 1 473 14 446 2.67e-23 102
Msa1079780 AT3G22250.1 25.397 504 272 24 2 462 16 458 3.55e-23 102
Msa1079780 AT4G27560.1 24.017 483 307 17 1 473 14 446 3.91e-22 99.4
Msa1079780 AT5G54060.1 24.040 495 305 20 1 473 20 465 3.93e-22 99.4
Msa1079780 AT3G29630.1 22.222 441 304 9 4 444 16 417 7.37e-22 98.2
Msa1079780 AT1G64920.1 23.422 491 306 20 1 475 13 449 1.30e-21 97.8
Msa1079780 AT5G54010.1 24.545 440 278 14 4 434 16 410 9.39e-21 95.1
Msa1079780 AT5G37950.2 26.909 275 174 10 105 373 84 337 1.66e-19 90.1
Msa1079780 AT2G22930.1 23.543 446 283 13 1 438 13 408 1.76e-19 91.3
Msa1079780 AT5G37950.1 26.786 280 174 10 105 373 84 343 4.02e-19 89.0
Msa1079780 AT3G29630.2 22.676 441 276 13 4 444 16 391 1.17e-18 88.6
Msa1079780 AT4G09500.2 23.608 449 279 15 1 438 13 408 3.44e-18 87.0
Msa1079780 AT1G50580.1 23.348 454 281 15 4 444 16 415 1.85e-17 85.1
Msa1079780 AT4G09500.1 23.636 440 265 13 1 438 13 383 2.94e-17 84.3
Msa1079780 AT4G01070.2 23.547 327 196 10 4 311 18 309 7.72e-13 70.1

Find 102 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTTAATGTGAATAATT+TGG 0.117677 7_2:-78989658 None:intergenic
TCCAGTTTCATTATCAAATA+AGG 0.212471 7_2:+78990201 Msa1079780:CDS
TAATTGAATTTCTCTATCTA+TGG 0.294249 7_2:-78989624 None:intergenic
TGAAGGAAAATTTATTGTTC+CGG 0.294582 7_2:+78989967 Msa1079780:CDS
AGAGGTTGGGTTGGGATTAG+AGG 0.312310 7_2:+78990378 Msa1079780:CDS
TCCTTATTTGATAATGAAAC+TGG 0.320618 7_2:-78990202 None:intergenic
TGTTGACACTTTACCTTCAA+TGG 0.339937 7_2:+78989718 Msa1079780:CDS
GAAGGAAAATTTATTGTTCC+GGG 0.339977 7_2:+78989968 Msa1079780:CDS
GCTCAAAGTGCTGTGCATTT+AGG 0.340363 7_2:+78990709 Msa1079780:CDS
GAGTAACTGGTTATAAAGTA+TGG 0.342899 7_2:+78990170 Msa1079780:CDS
TCAATTTGACCGGGCATTCC+CGG 0.342930 7_2:-78989986 None:intergenic
GAAATTACACAACTTGGAAT+TGG 0.357629 7_2:-78989815 None:intergenic
ATGAAGAAAAGGAAAAGATT+AGG 0.360196 7_2:+78990806 Msa1079780:CDS
GAAGAGTATAAAAGAGTAAC+TGG 0.360566 7_2:+78990157 Msa1079780:CDS
TGAAGAAAAGGAAAAGATTA+GGG 0.371117 7_2:+78990807 Msa1079780:CDS
TTGCGAAAATGTCAACTTCC+AGG 0.378836 7_2:+78990010 Msa1079780:CDS
GAAGGAAGGGTGAAGAATAA+AGG 0.382587 7_2:+78990484 Msa1079780:CDS
TTTAATAATATTCCTAATGA+AGG 0.383326 7_2:+78989950 Msa1079780:CDS
TGCATATGGAAGAGAGGAAA+TGG 0.391099 7_2:+78990435 Msa1079780:CDS
ATAGATAGAGAAATTCAATT+AGG 0.405701 7_2:+78989626 Msa1079780:CDS
ATTAGCACGTCGCAAAGTTA+AGG 0.411952 7_2:+78989556 Msa1079780:CDS
CAATTGAAAGAGGTTGGGTT+GGG 0.416863 7_2:+78990370 Msa1079780:CDS
CTTCCAGGGTTATTTAATCC+AGG 0.435832 7_2:+78990025 Msa1079780:CDS
TTATCTGAAATTACACAACT+TGG 0.438024 7_2:-78989821 None:intergenic
CATTGGAAGGGATTTCTTGT+GGG 0.440305 7_2:+78990596 Msa1079780:CDS
ATACTATCACACAAAGCAAT+AGG 0.441436 7_2:+78990541 Msa1079780:CDS
GAGAAATGGTTATATGAAGA+AGG 0.449752 7_2:+78990457 Msa1079780:CDS
TTGGACATTAAATCCATTGA+AGG 0.456900 7_2:-78989731 None:intergenic
GTCCCGTCGAATATAATTCT+CGG 0.460820 7_2:-78989887 None:intergenic
ATGAAGAAGGGTTTGAAGGA+AGG 0.463468 7_2:+78990470 Msa1079780:CDS
GATGCTATTGAGAAGGTAAT+GGG 0.465667 7_2:+78990778 Msa1079780:CDS
CCTCAACAATTGAAAGAGGT+TGG 0.469473 7_2:+78990364 Msa1079780:CDS
TCAACACTTTCACATCCCTC+TGG 0.473790 7_2:-78989701 None:intergenic
AACTTTGCCATGTCTACCAT+TGG 0.474256 7_2:-78989533 None:intergenic
AGATGCTATTGAGAAGGTAA+TGG 0.474911 7_2:+78990777 Msa1079780:CDS
CTCAACAATTGAAAGAGGTT+GGG 0.475910 7_2:+78990365 Msa1079780:CDS
AGTTAGATAAATTTGAAAGA+GGG 0.477235 7_2:+78990227 Msa1079780:CDS
TGGGATTAGAGGAAACAAAA+AGG 0.479739 7_2:+78990389 Msa1079780:CDS
TTTATTGTTCCGGGAATGCC+CGG 0.479753 7_2:+78989977 Msa1079780:CDS
TGAAGAAGGGTTTGAAGGAA+GGG 0.480479 7_2:+78990471 Msa1079780:CDS
GAAGAGAGGAAATGGAGAAA+TGG 0.481479 7_2:+78990443 Msa1079780:CDS
TCTGTTATTTATGTTTGTCT+TGG 0.484200 7_2:+78990322 Msa1079780:CDS
TTGAATTTCTCTATCTATGG+TGG 0.486239 7_2:-78989621 None:intergenic
CCTCTCAACACCCAAATGAA+TGG 0.488777 7_2:-78990412 None:intergenic
AAATTTCCAAGTGTAGAGTC+TGG 0.489017 7_2:+78989674 Msa1079780:CDS
TTCTCAAGTGGCTTGAATTG+TGG 0.494280 7_2:+78990290 Msa1079780:CDS
TTATATGAAGAAGGGTTTGA+AGG 0.495951 7_2:+78990466 Msa1079780:CDS
TTCCGAGAATTATATTCGAC+GGG 0.499717 7_2:+78989885 Msa1079780:CDS
AATGGGTGAGGATGAAGAAA+AGG 0.501088 7_2:+78990795 Msa1079780:CDS
ACATTGGAAGGGATTTCTTG+TGG 0.509026 7_2:+78990595 Msa1079780:CDS
CCAACCTCTTTCAATTGTTG+AGG 0.511503 7_2:-78990364 None:intergenic
TTGTACTTTAGCTTTGTCCT+TGG 0.513746 7_2:-78990930 None:intergenic
GAGTTAGATAAATTTGAAAG+AGG 0.515198 7_2:+78990226 Msa1079780:CDS
ACCTGGTCATCTTCTTCCAA+TGG 0.515469 7_2:+78989517 Msa1079780:CDS
GAGAGGTGCATATGGAAGAG+AGG 0.519682 7_2:+78990429 Msa1079780:CDS
ACAATTGAAAGAGGTTGGGT+TGG 0.519761 7_2:+78990369 Msa1079780:CDS
AACATAGGAAATGTTACTAA+AGG 0.523600 7_2:-78990622 None:intergenic
GAAAATATGCTGACATGGCA+AGG 0.525519 7_2:+78990839 Msa1079780:CDS
TGGGTGTTGAGAGGTGCATA+TGG 0.525587 7_2:+78990421 Msa1079780:CDS
AGAAATGGTTATATGAAGAA+GGG 0.526730 7_2:+78990458 Msa1079780:CDS
CAACACTTTCACATCCCTCT+GGG 0.526918 7_2:-78989700 None:intergenic
GGATGGAATTCAACATTGGA+AGG 0.530413 7_2:+78990583 Msa1079780:CDS
CCATTCATTTGGGTGTTGAG+AGG 0.531082 7_2:+78990412 Msa1079780:CDS
AAAATATTCTTATGGTGTAG+TGG 0.531745 7_2:+78990099 Msa1079780:CDS
TTCCAGGGTTATTTAATCCA+GGG 0.532827 7_2:+78990026 Msa1079780:CDS
ATTGAAATCGAATGGAATTG+AGG 0.533099 7_2:-78989598 None:intergenic
TTGAAATCGAATGGAATTGA+GGG 0.539865 7_2:-78989597 None:intergenic
TCAATTGTTGAGGTGTTGCA+CGG 0.547032 7_2:-78990354 None:intergenic
TAAAACTGCTCAGCAAACAT+AGG 0.548678 7_2:-78990637 None:intergenic
ACATAAATAACAGAATTTGA+AGG 0.550993 7_2:-78990313 None:intergenic
TATGGTGGATTGAAATCGAA+TGG 0.562074 7_2:-78989606 None:intergenic
AACACCTCAACAATTGAAAG+AGG 0.567338 7_2:+78990360 Msa1079780:CDS
ATTGGAAGGGATTTCTTGTG+GGG 0.568014 7_2:+78990597 Msa1079780:CDS
TGCGAAAATGTCAACTTCCA+GGG 0.572809 7_2:+78990011 Msa1079780:CDS
TTCATCCCCTTAATGGCACC+TGG 0.573392 7_2:+78989500 None:intergenic
TGTTAGAGATGCTATTGAGA+AGG 0.573533 7_2:+78990771 Msa1079780:CDS
GTTCCGAGAATTATATTCGA+CGG 0.581011 7_2:+78989884 Msa1079780:CDS
GGGATTCCAGACTCTACACT+TGG 0.583047 7_2:-78989680 None:intergenic
GTGGTGCAAGTTGTGAAGAA+TGG 0.583841 7_2:+78990673 Msa1079780:CDS
ACCATTGGAAGAAGATGACC+AGG 0.585589 7_2:-78989518 None:intergenic
AGCTAGAAAATATGCTGACA+TGG 0.587356 7_2:+78990834 Msa1079780:CDS
TCGAATGGAATTGAGGGGTG+TGG 0.587585 7_2:-78989591 None:intergenic
TATTGAGAAGGTAATGGGTG+AGG 0.599030 7_2:+78990783 Msa1079780:CDS
GCAAGGAAAGCAATAGAAGA+AGG 0.599917 7_2:+78990856 Msa1079780:CDS
GGTTATAAAGTATGGTGTGT+TGG 0.602415 7_2:+78990178 Msa1079780:CDS
TGTGAAGAATGGTGTAAGTG+TGG 0.608769 7_2:+78990684 Msa1079780:CDS
GATGGAATTCAACATTGGAA+GGG 0.609464 7_2:+78990584 Msa1079780:CDS
TCCAGGGTTATTTAATCCAG+GGG 0.610314 7_2:+78990027 Msa1079780:CDS
AATATGATAAAATTCTCAAG+TGG 0.617092 7_2:+78990278 Msa1079780:CDS
TTGTGGATGGAATTCAACAT+TGG 0.619014 7_2:+78990579 Msa1079780:CDS
TCTTCTTCCAATGGTAGACA+TGG 0.623180 7_2:+78989526 Msa1079780:CDS
TTTCGCAACTCAATTTGACC+GGG 0.626158 7_2:-78989995 None:intergenic
CAATTAGTAGAGTCATGTTG+CGG 0.638293 7_2:-78990891 None:intergenic
AAGTGCTGTGCATTTAGGAG+AGG 0.645377 7_2:+78990714 Msa1079780:CDS
TGTGATAGTATCAACACTTG+TGG 0.647114 7_2:-78990529 None:intergenic
GAAGATATAATAGATCTCCA+AGG 0.653989 7_2:+78990913 Msa1079780:CDS
GTGAAGAATGGTGTAAGTGT+GGG 0.654875 7_2:+78990685 Msa1079780:CDS
GTAGAGTCTGGAATCCCAGA+GGG 0.665040 7_2:+78989686 Msa1079780:CDS
CCAGGGTTATTTAATCCAGG+GGG 0.672108 7_2:+78990028 Msa1079780:CDS
TGAAATCGAATGGAATTGAG+GGG 0.680004 7_2:-78989596 None:intergenic
AGGAAAGCAATAGAAGAAGG+TGG 0.700077 7_2:+78990859 Msa1079780:CDS
TGTAGAGTCTGGAATCCCAG+AGG 0.756475 7_2:+78989685 Msa1079780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATTTAATGTGAATAATT+TGG - chr7_2:78989661-78989680 None:intergenic 15.0%
!! TTTAATAATATTCCTAATGA+AGG + chr7_2:78989950-78989969 Msa1079780:CDS 15.0%
!! ATAGAAGAAAAATATTCTTA+TGG + chr7_2:78990091-78990110 Msa1079780:CDS 15.0%
!!! AATAAAGGTTTTTTGATAAA+GGG + chr7_2:78990499-78990518 Msa1079780:CDS 15.0%
!! GAAATTTAATGTGAATAATT+TGG - chr7_2:78989661-78989680 None:intergenic 15.0%
!! TTTAATAATATTCCTAATGA+AGG + chr7_2:78989950-78989969 Msa1079780:CDS 15.0%
!! ATAGAAGAAAAATATTCTTA+TGG + chr7_2:78990091-78990110 Msa1079780:CDS 15.0%
!!! AATAAAGGTTTTTTGATAAA+GGG + chr7_2:78990499-78990518 Msa1079780:CDS 15.0%
!! TAATTGAATTTCTCTATCTA+TGG - chr7_2:78989627-78989646 None:intergenic 20.0%
!! ATAGATAGAGAAATTCAATT+AGG + chr7_2:78989626-78989645 Msa1079780:CDS 20.0%
!!! ACAATAAATTTTCCTTCATT+AGG - chr7_2:78989965-78989984 None:intergenic 20.0%
!! AGTTAGATAAATTTGAAAGA+GGG + chr7_2:78990227-78990246 Msa1079780:CDS 20.0%
!! AATATGATAAAATTCTCAAG+TGG + chr7_2:78990278-78990297 Msa1079780:CDS 20.0%
!! ACATAAATAACAGAATTTGA+AGG - chr7_2:78990316-78990335 None:intergenic 20.0%
!!! GAATAAAGGTTTTTTGATAA+AGG + chr7_2:78990498-78990517 Msa1079780:CDS 20.0%
!! TAATTGAATTTCTCTATCTA+TGG - chr7_2:78989627-78989646 None:intergenic 20.0%
!! ATAGATAGAGAAATTCAATT+AGG + chr7_2:78989626-78989645 Msa1079780:CDS 20.0%
!!! ACAATAAATTTTCCTTCATT+AGG - chr7_2:78989965-78989984 None:intergenic 20.0%
!! AGTTAGATAAATTTGAAAGA+GGG + chr7_2:78990227-78990246 Msa1079780:CDS 20.0%
!! AATATGATAAAATTCTCAAG+TGG + chr7_2:78990278-78990297 Msa1079780:CDS 20.0%
!! ACATAAATAACAGAATTTGA+AGG - chr7_2:78990316-78990335 None:intergenic 20.0%
!!! GAATAAAGGTTTTTTGATAA+AGG + chr7_2:78990498-78990517 Msa1079780:CDS 20.0%
! GCATAAAGCTATGTAAAAAT+TGG - chr7_2:78989753-78989772 None:intergenic 25.0%
!! TTATCTGAAATTACACAACT+TGG - chr7_2:78989824-78989843 None:intergenic 25.0%
! TGAAGGAAAATTTATTGTTC+CGG + chr7_2:78989967-78989986 Msa1079780:CDS 25.0%
! AAAATATTCTTATGGTGTAG+TGG + chr7_2:78990099-78990118 Msa1079780:CDS 25.0%
!!! GGTTAATAGTTTTGAAGAAT+TGG + chr7_2:78990120-78990139 Msa1079780:CDS 25.0%
! TCCAGTTTCATTATCAAATA+AGG + chr7_2:78990201-78990220 Msa1079780:CDS 25.0%
!!! TCCTTATTTGATAATGAAAC+TGG - chr7_2:78990205-78990224 None:intergenic 25.0%
! GAGTTAGATAAATTTGAAAG+AGG + chr7_2:78990226-78990245 Msa1079780:CDS 25.0%
!! TCTGTTATTTATGTTTGTCT+TGG + chr7_2:78990322-78990341 Msa1079780:CDS 25.0%
! AGAAATGGTTATATGAAGAA+GGG + chr7_2:78990458-78990477 Msa1079780:CDS 25.0%
! AACATAGGAAATGTTACTAA+AGG - chr7_2:78990625-78990644 None:intergenic 25.0%
!! GTTTTATAATGAGAAAGTTG+TGG + chr7_2:78990654-78990673 Msa1079780:CDS 25.0%
! ATGAAGAAAAGGAAAAGATT+AGG + chr7_2:78990806-78990825 Msa1079780:CDS 25.0%
! TGAAGAAAAGGAAAAGATTA+GGG + chr7_2:78990807-78990826 Msa1079780:CDS 25.0%
! GCATAAAGCTATGTAAAAAT+TGG - chr7_2:78989753-78989772 None:intergenic 25.0%
!! TTATCTGAAATTACACAACT+TGG - chr7_2:78989824-78989843 None:intergenic 25.0%
! TGAAGGAAAATTTATTGTTC+CGG + chr7_2:78989967-78989986 Msa1079780:CDS 25.0%
! AAAATATTCTTATGGTGTAG+TGG + chr7_2:78990099-78990118 Msa1079780:CDS 25.0%
!!! GGTTAATAGTTTTGAAGAAT+TGG + chr7_2:78990120-78990139 Msa1079780:CDS 25.0%
! TCCAGTTTCATTATCAAATA+AGG + chr7_2:78990201-78990220 Msa1079780:CDS 25.0%
!!! TCCTTATTTGATAATGAAAC+TGG - chr7_2:78990205-78990224 None:intergenic 25.0%
! GAGTTAGATAAATTTGAAAG+AGG + chr7_2:78990226-78990245 Msa1079780:CDS 25.0%
!! TCTGTTATTTATGTTTGTCT+TGG + chr7_2:78990322-78990341 Msa1079780:CDS 25.0%
! AGAAATGGTTATATGAAGAA+GGG + chr7_2:78990458-78990477 Msa1079780:CDS 25.0%
! AACATAGGAAATGTTACTAA+AGG - chr7_2:78990625-78990644 None:intergenic 25.0%
!! GTTTTATAATGAGAAAGTTG+TGG + chr7_2:78990654-78990673 Msa1079780:CDS 25.0%
! ATGAAGAAAAGGAAAAGATT+AGG + chr7_2:78990806-78990825 Msa1079780:CDS 25.0%
! TGAAGAAAAGGAAAAGATTA+GGG + chr7_2:78990807-78990826 Msa1079780:CDS 25.0%
TTGAAATCGAATGGAATTGA+GGG - chr7_2:78989600-78989619 None:intergenic 30.0%
ATTGAAATCGAATGGAATTG+AGG - chr7_2:78989601-78989620 None:intergenic 30.0%
TTGAATTTCTCTATCTATGG+TGG - chr7_2:78989624-78989643 None:intergenic 30.0%
TTGGACATTAAATCCATTGA+AGG - chr7_2:78989734-78989753 None:intergenic 30.0%
GAAATTACACAACTTGGAAT+TGG - chr7_2:78989818-78989837 None:intergenic 30.0%
GAAGGAAAATTTATTGTTCC+GGG + chr7_2:78989968-78989987 Msa1079780:CDS 30.0%
!!! TTTAATTTTTTGTTTCCCCC+TGG - chr7_2:78990046-78990065 None:intergenic 30.0%
GGGGGAAACAAAAAATTAAA+TGG + chr7_2:78990046-78990065 Msa1079780:CDS 30.0%
! GAAGAGTATAAAAGAGTAAC+TGG + chr7_2:78990157-78990176 Msa1079780:CDS 30.0%
GAGTAACTGGTTATAAAGTA+TGG + chr7_2:78990170-78990189 Msa1079780:CDS 30.0%
AAACAAAAAGGCCATTCATT+TGG + chr7_2:78990401-78990420 Msa1079780:CDS 30.0%
AACAAAAAGGCCATTCATTT+GGG + chr7_2:78990402-78990421 Msa1079780:CDS 30.0%
GAGAAATGGTTATATGAAGA+AGG + chr7_2:78990457-78990476 Msa1079780:CDS 30.0%
TTATATGAAGAAGGGTTTGA+AGG + chr7_2:78990466-78990485 Msa1079780:CDS 30.0%
!!! AAGGTTTTTTGATAAAGGGT+TGG + chr7_2:78990503-78990522 Msa1079780:CDS 30.0%
!!! AGGTTTTTTGATAAAGGGTT+GGG + chr7_2:78990504-78990523 Msa1079780:CDS 30.0%
ATACTATCACACAAAGCAAT+AGG + chr7_2:78990541-78990560 Msa1079780:CDS 30.0%
!!! TTTTTTTGACACATTGTGGA+TGG + chr7_2:78990566-78990585 Msa1079780:CDS 30.0%
GAAGATATAATAGATCTCCA+AGG + chr7_2:78990913-78990932 Msa1079780:CDS 30.0%
TTGAAATCGAATGGAATTGA+GGG - chr7_2:78989600-78989619 None:intergenic 30.0%
ATTGAAATCGAATGGAATTG+AGG - chr7_2:78989601-78989620 None:intergenic 30.0%
TTGAATTTCTCTATCTATGG+TGG - chr7_2:78989624-78989643 None:intergenic 30.0%
TTGGACATTAAATCCATTGA+AGG - chr7_2:78989734-78989753 None:intergenic 30.0%
GAAATTACACAACTTGGAAT+TGG - chr7_2:78989818-78989837 None:intergenic 30.0%
GAAGGAAAATTTATTGTTCC+GGG + chr7_2:78989968-78989987 Msa1079780:CDS 30.0%
!!! TTTAATTTTTTGTTTCCCCC+TGG - chr7_2:78990046-78990065 None:intergenic 30.0%
GGGGGAAACAAAAAATTAAA+TGG + chr7_2:78990046-78990065 Msa1079780:CDS 30.0%
! GAAGAGTATAAAAGAGTAAC+TGG + chr7_2:78990157-78990176 Msa1079780:CDS 30.0%
GAGTAACTGGTTATAAAGTA+TGG + chr7_2:78990170-78990189 Msa1079780:CDS 30.0%
AAACAAAAAGGCCATTCATT+TGG + chr7_2:78990401-78990420 Msa1079780:CDS 30.0%
AACAAAAAGGCCATTCATTT+GGG + chr7_2:78990402-78990421 Msa1079780:CDS 30.0%
GAGAAATGGTTATATGAAGA+AGG + chr7_2:78990457-78990476 Msa1079780:CDS 30.0%
TTATATGAAGAAGGGTTTGA+AGG + chr7_2:78990466-78990485 Msa1079780:CDS 30.0%
!!! AAGGTTTTTTGATAAAGGGT+TGG + chr7_2:78990503-78990522 Msa1079780:CDS 30.0%
!!! AGGTTTTTTGATAAAGGGTT+GGG + chr7_2:78990504-78990523 Msa1079780:CDS 30.0%
ATACTATCACACAAAGCAAT+AGG + chr7_2:78990541-78990560 Msa1079780:CDS 30.0%
!!! TTTTTTTGACACATTGTGGA+TGG + chr7_2:78990566-78990585 Msa1079780:CDS 30.0%
GAAGATATAATAGATCTCCA+AGG + chr7_2:78990913-78990932 Msa1079780:CDS 30.0%
TGAAATCGAATGGAATTGAG+GGG - chr7_2:78989599-78989618 None:intergenic 35.0%
!! TATGGTGGATTGAAATCGAA+TGG - chr7_2:78989609-78989628 None:intergenic 35.0%
AAATTTCCAAGTGTAGAGTC+TGG + chr7_2:78989674-78989693 Msa1079780:CDS 35.0%
TGTTGACACTTTACCTTCAA+TGG + chr7_2:78989718-78989737 Msa1079780:CDS 35.0%
GTTCCGAGAATTATATTCGA+CGG + chr7_2:78989884-78989903 Msa1079780:CDS 35.0%
TTCCGAGAATTATATTCGAC+GGG + chr7_2:78989885-78989904 Msa1079780:CDS 35.0%
! TTTTCGCAACTCAATTTGAC+CGG - chr7_2:78989999-78990018 None:intergenic 35.0%
TTCCAGGGTTATTTAATCCA+GGG + chr7_2:78990026-78990045 Msa1079780:CDS 35.0%
! ATGGTTTTCGCGAAGAAATA+AGG + chr7_2:78990065-78990084 Msa1079780:CDS 35.0%
! TGGTTTTCGCGAAGAAATAA+GGG + chr7_2:78990066-78990085 Msa1079780:CDS 35.0%
GGTTATAAAGTATGGTGTGT+TGG + chr7_2:78990178-78990197 Msa1079780:CDS 35.0%
AACACCTCAACAATTGAAAG+AGG + chr7_2:78990360-78990379 Msa1079780:CDS 35.0%
CTCAACAATTGAAAGAGGTT+GGG + chr7_2:78990365-78990384 Msa1079780:CDS 35.0%
TGGGATTAGAGGAAACAAAA+AGG + chr7_2:78990389-78990408 Msa1079780:CDS 35.0%
TGTGATAGTATCAACACTTG+TGG - chr7_2:78990532-78990551 None:intergenic 35.0%
!!! GGTGTTTTTTTGACACATTG+TGG + chr7_2:78990562-78990581 Msa1079780:CDS 35.0%
TTGTGGATGGAATTCAACAT+TGG + chr7_2:78990579-78990598 Msa1079780:CDS 35.0%
GATGGAATTCAACATTGGAA+GGG + chr7_2:78990584-78990603 Msa1079780:CDS 35.0%
TAAAACTGCTCAGCAAACAT+AGG - chr7_2:78990640-78990659 None:intergenic 35.0%
TGTTAGAGATGCTATTGAGA+AGG + chr7_2:78990771-78990790 Msa1079780:CDS 35.0%
AGATGCTATTGAGAAGGTAA+TGG + chr7_2:78990777-78990796 Msa1079780:CDS 35.0%
GATGCTATTGAGAAGGTAAT+GGG + chr7_2:78990778-78990797 Msa1079780:CDS 35.0%
AGCTAGAAAATATGCTGACA+TGG + chr7_2:78990834-78990853 Msa1079780:CDS 35.0%
CAATTAGTAGAGTCATGTTG+CGG - chr7_2:78990894-78990913 None:intergenic 35.0%
TGAAATCGAATGGAATTGAG+GGG - chr7_2:78989599-78989618 None:intergenic 35.0%
!! TATGGTGGATTGAAATCGAA+TGG - chr7_2:78989609-78989628 None:intergenic 35.0%
AAATTTCCAAGTGTAGAGTC+TGG + chr7_2:78989674-78989693 Msa1079780:CDS 35.0%
TGTTGACACTTTACCTTCAA+TGG + chr7_2:78989718-78989737 Msa1079780:CDS 35.0%
GTTCCGAGAATTATATTCGA+CGG + chr7_2:78989884-78989903 Msa1079780:CDS 35.0%
TTCCGAGAATTATATTCGAC+GGG + chr7_2:78989885-78989904 Msa1079780:CDS 35.0%
! TTTTCGCAACTCAATTTGAC+CGG - chr7_2:78989999-78990018 None:intergenic 35.0%
TTCCAGGGTTATTTAATCCA+GGG + chr7_2:78990026-78990045 Msa1079780:CDS 35.0%
! ATGGTTTTCGCGAAGAAATA+AGG + chr7_2:78990065-78990084 Msa1079780:CDS 35.0%
! TGGTTTTCGCGAAGAAATAA+GGG + chr7_2:78990066-78990085 Msa1079780:CDS 35.0%
GGTTATAAAGTATGGTGTGT+TGG + chr7_2:78990178-78990197 Msa1079780:CDS 35.0%
AACACCTCAACAATTGAAAG+AGG + chr7_2:78990360-78990379 Msa1079780:CDS 35.0%
CTCAACAATTGAAAGAGGTT+GGG + chr7_2:78990365-78990384 Msa1079780:CDS 35.0%
TGGGATTAGAGGAAACAAAA+AGG + chr7_2:78990389-78990408 Msa1079780:CDS 35.0%
TGTGATAGTATCAACACTTG+TGG - chr7_2:78990532-78990551 None:intergenic 35.0%
!!! GGTGTTTTTTTGACACATTG+TGG + chr7_2:78990562-78990581 Msa1079780:CDS 35.0%
TTGTGGATGGAATTCAACAT+TGG + chr7_2:78990579-78990598 Msa1079780:CDS 35.0%
GATGGAATTCAACATTGGAA+GGG + chr7_2:78990584-78990603 Msa1079780:CDS 35.0%
TAAAACTGCTCAGCAAACAT+AGG - chr7_2:78990640-78990659 None:intergenic 35.0%
TGTTAGAGATGCTATTGAGA+AGG + chr7_2:78990771-78990790 Msa1079780:CDS 35.0%
AGATGCTATTGAGAAGGTAA+TGG + chr7_2:78990777-78990796 Msa1079780:CDS 35.0%
GATGCTATTGAGAAGGTAAT+GGG + chr7_2:78990778-78990797 Msa1079780:CDS 35.0%
AGCTAGAAAATATGCTGACA+TGG + chr7_2:78990834-78990853 Msa1079780:CDS 35.0%
CAATTAGTAGAGTCATGTTG+CGG - chr7_2:78990894-78990913 None:intergenic 35.0%
TCTTCTTCCAATGGTAGACA+TGG + chr7_2:78989526-78989545 Msa1079780:CDS 40.0%
AACTTTGCCATGTCTACCAT+TGG - chr7_2:78989536-78989555 None:intergenic 40.0%
ATTAGCACGTCGCAAAGTTA+AGG + chr7_2:78989556-78989575 Msa1079780:CDS 40.0%
GTCCCGTCGAATATAATTCT+CGG - chr7_2:78989890-78989909 None:intergenic 40.0%
TTTCGCAACTCAATTTGACC+GGG - chr7_2:78989998-78990017 None:intergenic 40.0%
TTGCGAAAATGTCAACTTCC+AGG + chr7_2:78990010-78990029 Msa1079780:CDS 40.0%
TGCGAAAATGTCAACTTCCA+GGG + chr7_2:78990011-78990030 Msa1079780:CDS 40.0%
CTTCCAGGGTTATTTAATCC+AGG + chr7_2:78990025-78990044 Msa1079780:CDS 40.0%
TCCAGGGTTATTTAATCCAG+GGG + chr7_2:78990027-78990046 Msa1079780:CDS 40.0%
TTCTCAAGTGGCTTGAATTG+TGG + chr7_2:78990290-78990309 Msa1079780:CDS 40.0%
!! TCAATTGTTGAGGTGTTGCA+CGG - chr7_2:78990357-78990376 None:intergenic 40.0%
CCAACCTCTTTCAATTGTTG+AGG - chr7_2:78990367-78990386 None:intergenic 40.0%
CCTCAACAATTGAAAGAGGT+TGG + chr7_2:78990364-78990383 Msa1079780:CDS 40.0%
ACAATTGAAAGAGGTTGGGT+TGG + chr7_2:78990369-78990388 Msa1079780:CDS 40.0%
CAATTGAAAGAGGTTGGGTT+GGG + chr7_2:78990370-78990389 Msa1079780:CDS 40.0%
TGCATATGGAAGAGAGGAAA+TGG + chr7_2:78990435-78990454 Msa1079780:CDS 40.0%
GAAGAGAGGAAATGGAGAAA+TGG + chr7_2:78990443-78990462 Msa1079780:CDS 40.0%
ATGAAGAAGGGTTTGAAGGA+AGG + chr7_2:78990470-78990489 Msa1079780:CDS 40.0%
TGAAGAAGGGTTTGAAGGAA+GGG + chr7_2:78990471-78990490 Msa1079780:CDS 40.0%
GAAGGAAGGGTGAAGAATAA+AGG + chr7_2:78990484-78990503 Msa1079780:CDS 40.0%
GGATGGAATTCAACATTGGA+AGG + chr7_2:78990583-78990602 Msa1079780:CDS 40.0%
ACATTGGAAGGGATTTCTTG+TGG + chr7_2:78990595-78990614 Msa1079780:CDS 40.0%
CATTGGAAGGGATTTCTTGT+GGG + chr7_2:78990596-78990615 Msa1079780:CDS 40.0%
ATTGGAAGGGATTTCTTGTG+GGG + chr7_2:78990597-78990616 Msa1079780:CDS 40.0%
TGTGAAGAATGGTGTAAGTG+TGG + chr7_2:78990684-78990703 Msa1079780:CDS 40.0%
GTGAAGAATGGTGTAAGTGT+GGG + chr7_2:78990685-78990704 Msa1079780:CDS 40.0%
!! TATTGAGAAGGTAATGGGTG+AGG + chr7_2:78990783-78990802 Msa1079780:CDS 40.0%
AATGGGTGAGGATGAAGAAA+AGG + chr7_2:78990795-78990814 Msa1079780:CDS 40.0%
GAAAATATGCTGACATGGCA+AGG + chr7_2:78990839-78990858 Msa1079780:CDS 40.0%
GCAAGGAAAGCAATAGAAGA+AGG + chr7_2:78990856-78990875 Msa1079780:CDS 40.0%
AGGAAAGCAATAGAAGAAGG+TGG + chr7_2:78990859-78990878 Msa1079780:CDS 40.0%
TCTTCTTCCAATGGTAGACA+TGG + chr7_2:78989526-78989545 Msa1079780:CDS 40.0%
AACTTTGCCATGTCTACCAT+TGG - chr7_2:78989536-78989555 None:intergenic 40.0%
ATTAGCACGTCGCAAAGTTA+AGG + chr7_2:78989556-78989575 Msa1079780:CDS 40.0%
GTCCCGTCGAATATAATTCT+CGG - chr7_2:78989890-78989909 None:intergenic 40.0%
TTTCGCAACTCAATTTGACC+GGG - chr7_2:78989998-78990017 None:intergenic 40.0%
TTGCGAAAATGTCAACTTCC+AGG + chr7_2:78990010-78990029 Msa1079780:CDS 40.0%
TGCGAAAATGTCAACTTCCA+GGG + chr7_2:78990011-78990030 Msa1079780:CDS 40.0%
CTTCCAGGGTTATTTAATCC+AGG + chr7_2:78990025-78990044 Msa1079780:CDS 40.0%
TCCAGGGTTATTTAATCCAG+GGG + chr7_2:78990027-78990046 Msa1079780:CDS 40.0%
TTCTCAAGTGGCTTGAATTG+TGG + chr7_2:78990290-78990309 Msa1079780:CDS 40.0%
!! TCAATTGTTGAGGTGTTGCA+CGG - chr7_2:78990357-78990376 None:intergenic 40.0%
CCAACCTCTTTCAATTGTTG+AGG - chr7_2:78990367-78990386 None:intergenic 40.0%
CCTCAACAATTGAAAGAGGT+TGG + chr7_2:78990364-78990383 Msa1079780:CDS 40.0%
ACAATTGAAAGAGGTTGGGT+TGG + chr7_2:78990369-78990388 Msa1079780:CDS 40.0%
CAATTGAAAGAGGTTGGGTT+GGG + chr7_2:78990370-78990389 Msa1079780:CDS 40.0%
TGCATATGGAAGAGAGGAAA+TGG + chr7_2:78990435-78990454 Msa1079780:CDS 40.0%
GAAGAGAGGAAATGGAGAAA+TGG + chr7_2:78990443-78990462 Msa1079780:CDS 40.0%
ATGAAGAAGGGTTTGAAGGA+AGG + chr7_2:78990470-78990489 Msa1079780:CDS 40.0%
TGAAGAAGGGTTTGAAGGAA+GGG + chr7_2:78990471-78990490 Msa1079780:CDS 40.0%
GAAGGAAGGGTGAAGAATAA+AGG + chr7_2:78990484-78990503 Msa1079780:CDS 40.0%
GGATGGAATTCAACATTGGA+AGG + chr7_2:78990583-78990602 Msa1079780:CDS 40.0%
ACATTGGAAGGGATTTCTTG+TGG + chr7_2:78990595-78990614 Msa1079780:CDS 40.0%
CATTGGAAGGGATTTCTTGT+GGG + chr7_2:78990596-78990615 Msa1079780:CDS 40.0%
ATTGGAAGGGATTTCTTGTG+GGG + chr7_2:78990597-78990616 Msa1079780:CDS 40.0%
TGTGAAGAATGGTGTAAGTG+TGG + chr7_2:78990684-78990703 Msa1079780:CDS 40.0%
GTGAAGAATGGTGTAAGTGT+GGG + chr7_2:78990685-78990704 Msa1079780:CDS 40.0%
!! TATTGAGAAGGTAATGGGTG+AGG + chr7_2:78990783-78990802 Msa1079780:CDS 40.0%
AATGGGTGAGGATGAAGAAA+AGG + chr7_2:78990795-78990814 Msa1079780:CDS 40.0%
GAAAATATGCTGACATGGCA+AGG + chr7_2:78990839-78990858 Msa1079780:CDS 40.0%
GCAAGGAAAGCAATAGAAGA+AGG + chr7_2:78990856-78990875 Msa1079780:CDS 40.0%
AGGAAAGCAATAGAAGAAGG+TGG + chr7_2:78990859-78990878 Msa1079780:CDS 40.0%
ACCTGGTCATCTTCTTCCAA+TGG + chr7_2:78989517-78989536 Msa1079780:CDS 45.0%
ACCATTGGAAGAAGATGACC+AGG - chr7_2:78989521-78989540 None:intergenic 45.0%
CAACACTTTCACATCCCTCT+GGG - chr7_2:78989703-78989722 None:intergenic 45.0%
TCAACACTTTCACATCCCTC+TGG - chr7_2:78989704-78989723 None:intergenic 45.0%
TTTATTGTTCCGGGAATGCC+CGG + chr7_2:78989977-78989996 Msa1079780:CDS 45.0%
CCAGGGTTATTTAATCCAGG+GGG + chr7_2:78990028-78990047 Msa1079780:CDS 45.0%
CCTCTCAACACCCAAATGAA+TGG - chr7_2:78990415-78990434 None:intergenic 45.0%
!! CCATTCATTTGGGTGTTGAG+AGG + chr7_2:78990412-78990431 Msa1079780:CDS 45.0%
GTGGTGCAAGTTGTGAAGAA+TGG + chr7_2:78990673-78990692 Msa1079780:CDS 45.0%
!! GCTCAAAGTGCTGTGCATTT+AGG + chr7_2:78990709-78990728 Msa1079780:CDS 45.0%
! AAGTGCTGTGCATTTAGGAG+AGG + chr7_2:78990714-78990733 Msa1079780:CDS 45.0%
ACCTGGTCATCTTCTTCCAA+TGG + chr7_2:78989517-78989536 Msa1079780:CDS 45.0%
ACCATTGGAAGAAGATGACC+AGG - chr7_2:78989521-78989540 None:intergenic 45.0%
CAACACTTTCACATCCCTCT+GGG - chr7_2:78989703-78989722 None:intergenic 45.0%
TCAACACTTTCACATCCCTC+TGG - chr7_2:78989704-78989723 None:intergenic 45.0%
TTTATTGTTCCGGGAATGCC+CGG + chr7_2:78989977-78989996 Msa1079780:CDS 45.0%
CCAGGGTTATTTAATCCAGG+GGG + chr7_2:78990028-78990047 Msa1079780:CDS 45.0%
CCTCTCAACACCCAAATGAA+TGG - chr7_2:78990415-78990434 None:intergenic 45.0%
!! CCATTCATTTGGGTGTTGAG+AGG + chr7_2:78990412-78990431 Msa1079780:CDS 45.0%
GTGGTGCAAGTTGTGAAGAA+TGG + chr7_2:78990673-78990692 Msa1079780:CDS 45.0%
!! GCTCAAAGTGCTGTGCATTT+AGG + chr7_2:78990709-78990728 Msa1079780:CDS 45.0%
! AAGTGCTGTGCATTTAGGAG+AGG + chr7_2:78990714-78990733 Msa1079780:CDS 45.0%
TCGAATGGAATTGAGGGGTG+TGG - chr7_2:78989594-78989613 None:intergenic 50.0%
GGGATTCCAGACTCTACACT+TGG - chr7_2:78989683-78989702 None:intergenic 50.0%
! TGTAGAGTCTGGAATCCCAG+AGG + chr7_2:78989685-78989704 Msa1079780:CDS 50.0%
! GTAGAGTCTGGAATCCCAGA+GGG + chr7_2:78989686-78989705 Msa1079780:CDS 50.0%
TCAATTTGACCGGGCATTCC+CGG - chr7_2:78989989-78990008 None:intergenic 50.0%
CCCCCTGGATTAAATAACCC+TGG - chr7_2:78990031-78990050 None:intergenic 50.0%
!! AGAGGTTGGGTTGGGATTAG+AGG + chr7_2:78990378-78990397 Msa1079780:CDS 50.0%
!! TGGGTGTTGAGAGGTGCATA+TGG + chr7_2:78990421-78990440 Msa1079780:CDS 50.0%
! GAGAGGTGCATATGGAAGAG+AGG + chr7_2:78990429-78990448 Msa1079780:CDS 50.0%
TCGAATGGAATTGAGGGGTG+TGG - chr7_2:78989594-78989613 None:intergenic 50.0%
GGGATTCCAGACTCTACACT+TGG - chr7_2:78989683-78989702 None:intergenic 50.0%
! TGTAGAGTCTGGAATCCCAG+AGG + chr7_2:78989685-78989704 Msa1079780:CDS 50.0%
! GTAGAGTCTGGAATCCCAGA+GGG + chr7_2:78989686-78989705 Msa1079780:CDS 50.0%
TCAATTTGACCGGGCATTCC+CGG - chr7_2:78989989-78990008 None:intergenic 50.0%
CCCCCTGGATTAAATAACCC+TGG - chr7_2:78990031-78990050 None:intergenic 50.0%
!! AGAGGTTGGGTTGGGATTAG+AGG + chr7_2:78990378-78990397 Msa1079780:CDS 50.0%
!! TGGGTGTTGAGAGGTGCATA+TGG + chr7_2:78990421-78990440 Msa1079780:CDS 50.0%
! GAGAGGTGCATATGGAAGAG+AGG + chr7_2:78990429-78990448 Msa1079780:CDS 50.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 78989512 78990945 78989512 ID=Msa1079780;Name=Msa1079780
chr7_2 mRNA 78989512 78990945 78989512 ID=Msa1079780-mRNA-1;Parent=Msa1079780;Name=Msa1079780-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|477
chr7_2 exon 78989512 78990945 78989512 ID=Msa1079780-mRNA-1:exon:19778;Parent=Msa1079780-mRNA-1
chr7_2 CDS 78989512 78990945 78989512 ID=Msa1079780-mRNA-1:cds;Parent=Msa1079780-mRNA-1
Gene Sequence

>Msa1079780

ATGGCACCTGGTCATCTTCTTCCAATGGTAGACATGGCAAAGTTATTAGCACGTCGCAAAGTTAAGGTAACAATACTCACCACACCCCTCAATTCCATTCGATTTCAATCCACCATAGATAGAGAAATTCAATTAGGATCACAAATCCAAATTATTCACATTAAATTTCCAAGTGTAGAGTCTGGAATCCCAGAGGGATGTGAAAGTGTTGACACTTTACCTTCAATGGATTTAATGTCCAATTTTTACATAGCTTTATGCAAGATGCAAAATTCACTAGAAAATGTTTTTGAAAAGCTAAGACCAATTCCAAGTTGTGTAATTTCAGATAAACACATTTCATGTGTAGCTGAAATTGCAATGAAATTCAAAGTTCCGAGAATTATATTCGACGGGACTAATTGTTTTCATCTATTATGCAATCACAATTTACGTAATTTTAATAATATTCCTAATGAAGGAAAATTTATTGTTCCGGGAATGCCCGGTCAAATTGAGTTGCGAAAATGTCAACTTCCAGGGTTATTTAATCCAGGGGGAAACAAAAAATTAAATGGTTTTCGCGAAGAAATAAGGGAAATAGAAGAAAAATATTCTTATGGTGTAGTGGTTAATAGTTTTGAAGAATTGGAAGAAAAATATGTTGAAGAGTATAAAAGAGTAACTGGTTATAAAGTATGGTGTGTTGGTCCAGTTTCATTATCAAATAAGGATGAGTTAGATAAATTTGAAAGAGGGAAGAAATTAAATTCAAATGATGAAAGTCAATATGATAAAATTCTCAAGTGGCTTGAATTGTGGCCTTCAAATTCTGTTATTTATGTTTGTCTTGGTAGTTTAAACCGTGCAACACCTCAACAATTGAAAGAGGTTGGGTTGGGATTAGAGGAAACAAAAAGGCCATTCATTTGGGTGTTGAGAGGTGCATATGGAAGAGAGGAAATGGAGAAATGGTTATATGAAGAAGGGTTTGAAGGAAGGGTGAAGAATAAAGGTTTTTTGATAAAGGGTTGGGCACCACAAGTGTTGATACTATCACACAAAGCAATAGGTGTTTTTTTGACACATTGTGGATGGAATTCAACATTGGAAGGGATTTCTTGTGGGGTGCCTTTAGTAACATTTCCTATGTTTGCTGAGCAGTTTTATAATGAGAAAGTTGTGGTGCAAGTTGTGAAGAATGGTGTAAGTGTGGGAGCTCAAAGTGCTGTGCATTTAGGAGAGGAAGAGAAGTGTTGTGTTGTTGTTAAGAGAGAAGATGTTAGAGATGCTATTGAGAAGGTAATGGGTGAGGATGAAGAAAAGGAAAAGATTAGGGAAAGAGCTAGAAAATATGCTGACATGGCAAGGAAAGCAATAGAAGAAGGTGGTTCTTCTTACCGCAACATGACTCTACTAATTGAAGATATAATAGATCTCCAAGGACAAAGCTAA

Protein sequence

>Msa1079780

MAPGHLLPMVDMAKLLARRKVKVTILTTPLNSIRFQSTIDREIQLGSQIQIIHIKFPSVESGIPEGCESVDTLPSMDLMSNFYIALCKMQNSLENVFEKLRPIPSCVISDKHISCVAEIAMKFKVPRIIFDGTNCFHLLCNHNLRNFNNIPNEGKFIVPGMPGQIELRKCQLPGLFNPGGNKKLNGFREEIREIEEKYSYGVVVNSFEELEEKYVEEYKRVTGYKVWCVGPVSLSNKDELDKFERGKKLNSNDESQYDKILKWLELWPSNSVIYVCLGSLNRATPQQLKEVGLGLEETKRPFIWVLRGAYGREEMEKWLYEEGFEGRVKNKGFLIKGWAPQVLILSHKAIGVFLTHCGWNSTLEGISCGVPLVTFPMFAEQFYNEKVVVQVVKNGVSVGAQSAVHLGEEEKCCVVVKREDVRDAIEKVMGEDEEKEKIRERARKYADMARKAIEEGGSSYRNMTLLIEDIIDLQGQS*