AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1093420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093420 MtrunA17_Chr7g0265111 96.610 472 16 0 1 472 46 517 0.0 944
Msa1093420 MtrunA17_Chr1g0179901 64.927 479 159 4 1 474 23 497 0.0 640
Msa1093420 MtrunA17_Chr5g0419771 62.213 479 171 5 1 474 43 516 0.0 621
Msa1093420 MtrunA17_Chr7g0265041 50.826 484 221 9 1 475 18 493 1.37e-161 466
Msa1093420 MtrunA17_Chr7g0265101 51.037 482 215 10 1 471 16 487 1.44e-158 459
Msa1093420 MtrunA17_Chr7g0265051 51.357 479 216 10 1 471 16 485 1.55e-158 459
Msa1093420 MtrunA17_Chr4g0011051 49.068 483 234 6 1 476 16 493 7.68e-157 454
Msa1093420 MtrunA17_Chr7g0275681 49.686 477 222 8 1 472 19 482 6.70e-156 451
Msa1093420 MtrunA17_Chr7g0265151 49.064 481 223 9 1 471 16 484 2.03e-154 448
Msa1093420 MtrunA17_Chr5g0419761 48.548 482 234 7 1 475 16 490 4.45e-154 447
Msa1093420 MtrunA17_Chr7g0265141 44.676 479 245 8 1 469 16 484 1.72e-134 397
Msa1093420 MtrunA17_Chr8g0366391 40.994 483 257 12 1 473 16 480 3.65e-118 355
Msa1093420 MtrunA17_Chr4g0044501 40.292 479 263 9 1 473 17 478 3.32e-116 350
Msa1093420 MtrunA17_Chr4g0044511 41.423 478 252 13 1 470 47 504 3.11e-115 348
Msa1093420 MtrunA17_Chr4g0066151 38.542 480 260 13 1 470 25 479 1.69e-110 335
Msa1093420 MtrunA17_Chr7g0243631 38.750 480 277 8 2 474 21 490 1.09e-109 334
Msa1093420 MtrunA17_Chr7g0243681 38.542 480 273 9 2 474 19 483 1.92e-108 330
Msa1093420 MtrunA17_Chr7g0243931 38.750 480 277 9 2 474 25 494 1.25e-106 326
Msa1093420 MtrunA17_Chr7g0235051 38.429 471 250 10 2 469 19 452 1.30e-104 320
Msa1093420 MtrunA17_Chr5g0401851 37.996 479 276 9 1 470 17 483 2.60e-104 320
Msa1093420 MtrunA17_Chr7g0243871 37.422 481 274 10 1 474 16 476 8.88e-104 318
Msa1093420 MtrunA17_Chr4g0044481 42.271 414 206 7 1 414 34 414 5.69e-103 314
Msa1093420 MtrunA17_Chr4g0066131 37.736 477 262 13 1 467 20 471 1.37e-102 315
Msa1093420 MtrunA17_Chr7g0243781 36.458 480 281 8 2 474 17 479 2.13e-102 315
Msa1093420 MtrunA17_Chr7g0243861 38.446 489 266 11 2 474 22 491 2.58e-102 315
Msa1093420 MtrunA17_Chr8g0355221 37.996 479 274 10 1 470 22 486 3.48e-102 315
Msa1093420 MtrunA17_Chr7g0243771 37.681 483 274 11 2 474 14 479 1.37e-101 313
Msa1093420 MtrunA17_Chr7g0243801 37.474 483 275 11 2 474 15 480 2.12e-101 312
Msa1093420 MtrunA17_Chr4g0060511 38.095 483 279 11 2 474 19 491 3.64e-101 312
Msa1093420 MtrunA17_Chr7g0243951 37.888 483 276 11 2 474 19 487 4.06e-101 311
Msa1093420 MtrunA17_Chr5g0416741 38.351 485 275 9 1 476 20 489 8.64e-99 306
Msa1093420 MtrunA17_Chr4g0044521 37.924 472 260 10 4 468 19 464 1.92e-98 304
Msa1093420 MtrunA17_Chr4g0066221 38.174 482 265 14 2 470 19 480 5.95e-98 303
Msa1093420 MtrunA17_Chr6g0463891 38.683 486 274 10 1 476 19 490 6.24e-98 303
Msa1093420 MtrunA17_Chr4g0066261 36.885 488 274 12 1 474 18 485 7.53e-96 298
Msa1093420 MtrunA17_Chr4g0014061 37.474 475 270 12 1 468 16 470 1.36e-93 292
Msa1093420 MtrunA17_Chr1g0165701 36.820 478 278 12 1 470 22 483 5.72e-93 291
Msa1093420 MtrunA17_Chr4g0066281 36.232 483 270 12 2 476 20 472 1.63e-92 289
Msa1093420 MtrunA17_Chr4g0066171 35.124 484 273 15 1 474 28 480 8.50e-91 285
Msa1093420 MtrunA17_Chr7g0243761 36.100 482 257 11 2 474 19 458 5.19e-89 280
Msa1093420 MtrunA17_Chr7g0243851 34.765 489 242 11 2 474 19 446 2.49e-88 277
Msa1093420 MtrunA17_Chr4g0066201 35.404 483 274 15 1 474 25 478 3.60e-88 278
Msa1093420 MtrunA17_Chr6g0463861 34.888 493 269 15 1 474 18 477 3.79e-88 278
Msa1093420 MtrunA17_Chr2g0294931 35.331 484 279 12 1 470 18 481 1.03e-87 277
Msa1093420 MtrunA17_Chr8g0374971 34.560 489 284 14 1 475 19 485 1.66e-84 268
Msa1093420 MtrunA17_Chr2g0294921 35.569 492 275 16 1 474 167 634 2.34e-83 270
Msa1093420 MtrunA17_Chr5g0416821 35.331 484 278 11 2 476 22 479 1.24e-82 263
Msa1093420 MtrunA17_Chr5g0428081 35.174 489 277 16 2 474 19 483 1.30e-82 263
Msa1093420 MtrunA17_Chr7g0243811 35.610 410 244 7 8 415 3 394 6.40e-79 251
Msa1093420 MtrunA17_Chr8g0374931 33.537 492 285 15 1 474 18 485 1.52e-78 253
Msa1093420 MtrunA17_Chr8g0374901 33.265 487 289 16 1 474 19 482 4.69e-78 251
Msa1093420 MtrunA17_Chr6g0463851 34.888 493 268 17 2 470 19 482 2.34e-77 250
Msa1093420 MtrunA17_Chr7g0218311 34.082 490 282 17 1 474 23 487 5.41e-77 249
Msa1093420 MtrunA17_Chr8g0374941 34.504 484 281 13 1 470 956 1417 6.14e-77 262
Msa1093420 MtrunA17_Chr8g0374941 34.188 468 276 13 1 456 18 465 1.06e-74 256
Msa1093420 MtrunA17_Chr8g0374941 33.191 467 274 14 1 452 483 926 1.10e-66 232
Msa1093420 MtrunA17_Chr5g0410941 33.539 486 281 16 1 470 30 489 1.37e-76 248
Msa1093420 MtrunA17_Chr8g0350881 34.156 486 280 16 1 470 19 480 6.41e-75 243
Msa1093420 MtrunA17_Chr2g0294941 36.927 371 200 11 101 455 12 364 7.24e-70 227
Msa1093420 MtrunA17_Chr2g0329111 31.423 506 282 19 1 477 13 482 1.12e-62 211
Msa1093420 MtrunA17_Chr5g0440421 31.000 500 298 18 1 473 17 496 1.64e-62 211
Msa1093420 MtrunA17_Chr7g0243711 44.177 249 130 5 229 474 78 320 1.22e-56 191
Msa1093420 MtrunA17_Chr7g0243611 38.535 314 163 10 115 421 5 295 7.11e-53 180
Msa1093420 MtrunA17_Chr2g0307961 29.150 494 281 17 2 471 21 469 1.59e-51 181
Msa1093420 MtrunA17_Chr6g0464881 28.542 487 277 18 4 471 21 455 1.48e-50 178
Msa1093420 MtrunA17_Chr8g0357361 45.771 201 100 4 199 399 61 252 1.79e-49 170
Msa1093420 MtrunA17_Chr6g0464921 28.482 481 284 19 4 470 21 455 6.37e-49 174
Msa1093420 MtrunA17_Chr5g0442541 28.916 498 284 16 2 472 13 467 9.63e-49 174
Msa1093420 MtrunA17_Chr8g0361411 28.921 491 278 15 4 474 18 457 1.10e-48 173
Msa1093420 MtrunA17_Chr6g0464871 28.632 475 280 20 2 463 31 459 1.32e-48 173
Msa1093420 MtrunA17_Chr7g0231631 40.000 280 143 6 200 476 8 265 4.68e-48 166
Msa1093420 MtrunA17_Chr2g0278711 27.530 494 295 17 4 471 21 477 3.38e-47 170
Msa1093420 MtrunA17_Chr6g0464841 28.390 472 281 17 4 463 21 447 4.09e-47 169
Msa1093420 MtrunA17_Chr1g0159551 27.917 480 293 13 2 470 22 459 8.01e-47 168
Msa1093420 MtrunA17_Chr8g0377921 27.926 487 296 15 4 471 14 464 1.77e-46 167
Msa1093420 MtrunA17_Chr4g0066141 50.898 167 74 4 312 474 193 355 1.81e-46 165
Msa1093420 MtrunA17_Chr4g0066141 28.042 189 119 6 23 211 9 180 4.43e-15 76.6
Msa1093420 MtrunA17_Chr3g0118691 28.543 494 292 18 4 471 25 483 1.97e-46 168
Msa1093420 MtrunA17_Chr6g0462531 28.252 492 271 18 1 459 11 453 3.07e-46 167
Msa1093420 MtrunA17_Chr5g0420801 27.959 490 292 16 2 473 15 461 3.39e-46 167
Msa1093420 MtrunA17_Chr5g0429711 27.642 492 280 20 4 470 21 461 4.01e-46 166
Msa1093420 MtrunA17_Chr6g0464861 28.033 478 278 18 2 463 19 446 4.11e-46 166
Msa1093420 MtrunA17_Chr3g0118701 27.935 494 295 17 4 471 25 483 4.78e-46 167
Msa1093420 MtrunA17_Chr3g0121991 27.403 489 301 14 4 470 89 545 1.98e-45 166
Msa1093420 MtrunA17_Chr8g0347281 27.254 488 277 17 4 463 28 465 3.56e-45 164
Msa1093420 MtrunA17_Chr3g0079731 28.797 507 275 18 4 468 16 478 7.74e-45 163
Msa1093420 MtrunA17_Chr5g0412111 30.470 489 280 17 2 470 13 461 9.28e-45 163
Msa1093420 MtrunA17_Chr5g0431371 26.539 471 300 14 4 470 20 448 1.45e-44 162
Msa1093420 MtrunA17_Chr8g0370941 25.600 500 298 14 4 464 18 482 1.93e-44 163
Msa1093420 MtrunA17_Chr1g0207971 25.316 474 313 15 2 470 16 453 1.98e-44 162
Msa1093420 MtrunA17_Chr5g0412131 29.046 482 297 14 2 470 20 469 4.02e-44 161
Msa1093420 MtrunA17_Chr1g0207951 26.427 473 310 14 2 470 132 570 4.91e-44 166
Msa1093420 MtrunA17_Chr1g0207951 24.842 475 317 16 4 470 666 1108 7.51e-39 150
Msa1093420 MtrunA17_Chr3g0122001 28.687 495 287 17 4 470 496 952 6.68e-44 165
Msa1093420 MtrunA17_Chr3g0122001 27.383 493 297 15 4 470 16 473 3.10e-42 160
Msa1093420 MtrunA17_Chr8g0347271 27.664 488 275 18 4 463 29 466 7.33e-44 160
Msa1093420 MtrunA17_Chr5g0431361 27.066 484 284 15 4 470 22 453 8.14e-44 160
Msa1093420 MtrunA17_Chr3g0118671 26.854 499 298 19 2 471 14 474 1.04e-43 160
Msa1093420 MtrunA17_Chr5g0448521 27.309 498 290 17 4 472 15 469 1.15e-43 160
Msa1093420 MtrunA17_Chr6g0462551 28.514 498 264 18 4 463 14 457 1.26e-43 160
Msa1093420 MtrunA17_Chr5g0431421 26.964 471 300 14 4 471 20 449 2.14e-43 159
Msa1093420 MtrunA17_Chr1g0173121 28.425 489 282 16 2 470 22 462 4.58e-43 158
Msa1093420 MtrunA17_Chr2g0302961 26.572 493 298 17 2 470 13 465 4.68e-43 158
Msa1093420 MtrunA17_Chr5g0442521 26.800 500 302 17 2 472 13 477 5.09e-43 158
Msa1093420 MtrunA17_Chr3g0078841 27.328 494 302 17 2 471 18 478 5.69e-43 158
Msa1093420 MtrunA17_Chr3g0118771 26.761 497 301 18 2 471 29 489 6.08e-43 158
Msa1093420 MtrunA17_Chr1g0207831 27.349 479 307 19 2 470 16 463 9.76e-43 157
Msa1093420 MtrunA17_Chr2g0302991 27.310 487 295 18 4 470 15 462 9.99e-43 157
Msa1093420 MtrunA17_Chr8g0339451 34.520 281 145 7 199 463 199 456 2.13e-42 156
Msa1093420 MtrunA17_Chr7g0232411 28.049 492 285 19 2 466 12 461 2.36e-42 156
Msa1093420 MtrunA17_Chr3g0092641 27.823 496 295 19 2 471 20 478 2.44e-42 156
Msa1093420 MtrunA17_Chr5g0414331 28.333 480 290 17 2 472 21 455 2.52e-42 156
Msa1093420 MtrunA17_Chr5g0426431 27.328 494 300 19 2 471 20 478 3.04e-42 156
Msa1093420 MtrunA17_Chr8g0339601 34.875 281 144 7 199 463 66 323 3.53e-42 152
Msa1093420 MtrunA17_Chr3g0098111 26.240 484 311 16 2 470 17 469 3.60e-42 156
Msa1093420 MtrunA17_Chr5g0412101 29.545 484 293 15 2 470 20 470 4.82e-42 155
Msa1093420 MtrunA17_Chr8g0339631 28.319 452 255 14 56 466 41 464 5.19e-42 155
Msa1093420 MtrunA17_Chr8g0336331 27.530 494 300 17 2 471 18 477 5.60e-42 155
Msa1093420 MtrunA17_Chr8g0369341 27.010 485 303 16 2 468 15 466 5.62e-42 155
Msa1093420 MtrunA17_Chr6g0486251 34.062 320 171 10 158 466 170 460 6.10e-42 155
Msa1093420 MtrunA17_Chr6g0486201 34.062 320 171 10 158 466 170 460 6.10e-42 155
Msa1093420 MtrunA17_Chr4g0050341 29.116 498 284 21 2 467 27 487 8.69e-42 155
Msa1093420 MtrunA17_Chr5g0442581 26.969 508 290 18 3 471 12 477 8.77e-42 156
Msa1093420 MtrunA17_Chr5g0429681 27.386 482 301 16 4 471 54 500 1.60e-41 154
Msa1093420 MtrunA17_Chr8g0373301 26.923 494 286 14 16 466 1 462 1.71e-41 154
Msa1093420 MtrunA17_Chr7g0243911 40.704 199 113 4 259 455 20 215 1.76e-41 147
Msa1093420 MtrunA17_Chr8g0334861 33.030 330 179 7 161 475 166 468 3.21e-41 153
Msa1093420 MtrunA17_Chr6g0462571 28.074 488 276 16 4 463 14 454 3.22e-41 153
Msa1093420 MtrunA17_Chr6g0454341 26.559 497 298 19 4 471 20 478 3.32e-41 153
Msa1093420 MtrunA17_Chr3g0118711 25.806 496 307 17 2 471 21 481 5.02e-41 153
Msa1093420 MtrunA17_Chr5g0442601 28.024 496 298 18 4 472 414 877 1.08e-40 155
Msa1093420 MtrunA17_Chr5g0442601 28.852 305 170 9 105 396 63 333 2.23e-25 110
Msa1093420 MtrunA17_Chr4g0032331 27.366 486 290 16 4 475 18 454 1.72e-40 151
Msa1093420 MtrunA17_Chr6g0454301 27.435 503 286 22 4 471 273 731 2.29e-40 154
Msa1093420 MtrunA17_Chr6g0454301 31.600 250 139 9 226 469 5 228 8.50e-26 111
Msa1093420 MtrunA17_Chr6g0454361 30.102 392 215 14 105 471 124 481 2.32e-40 151
Msa1093420 MtrunA17_Chr5g0414321 28.216 482 288 18 2 472 19 453 2.33e-40 150
Msa1093420 MtrunA17_Chr7g0232391 27.530 494 285 19 2 466 12 461 2.46e-40 150
Msa1093420 MtrunA17_Chr5g0409591 27.139 409 226 13 88 445 75 462 3.35e-40 150
Msa1093420 MtrunA17_Chr8g0339461 33.216 283 148 7 199 464 207 465 5.78e-40 150
Msa1093420 MtrunA17_Chr3g0112761 28.364 483 285 18 4 473 18 452 5.86e-40 149
Msa1093420 MtrunA17_Chr8g0336651 36.042 283 143 6 197 464 978 1237 6.51e-40 154
Msa1093420 MtrunA17_Chr8g0336651 32.500 280 149 9 201 466 207 460 9.27e-34 135
Msa1093420 MtrunA17_Chr8g0336651 32.414 290 148 8 179 466 527 770 4.75e-33 133
Msa1093420 MtrunA17_Chr6g0454321 26.598 485 291 18 4 460 20 467 1.36e-39 151
Msa1093420 MtrunA17_Chr1g0207981 27.893 484 304 19 2 471 21 473 1.51e-39 149
Msa1093420 MtrunA17_Chr3g0112771 26.033 484 301 16 4 477 22 458 2.45e-39 148
Msa1093420 MtrunA17_Chr6g0454401 27.146 501 293 20 4 471 20 481 2.49e-39 148
Msa1093420 MtrunA17_Chr6g0459311 28.800 500 270 23 2 466 19 467 3.18e-39 148
Msa1093420 MtrunA17_Chr8g0335161 34.532 278 144 8 201 466 211 462 3.34e-39 147
Msa1093420 MtrunA17_Chr8g0359821 25.249 503 309 17 4 477 20 484 3.69e-39 148
Msa1093420 MtrunA17_Chr5g0442491 27.579 504 292 19 3 472 12 476 3.84e-39 147
Msa1093420 MtrunA17_Chr8g0336691 32.680 306 169 9 175 466 1093 1375 3.99e-39 151
Msa1093420 MtrunA17_Chr8g0336691 32.423 293 160 8 187 466 202 469 1.14e-35 141
Msa1093420 MtrunA17_Chr8g0336691 33.835 266 134 7 201 464 681 906 3.73e-31 127
Msa1093420 MtrunA17_Chr5g0431401 26.170 470 303 14 4 470 20 448 4.45e-39 147
Msa1093420 MtrunA17_Chr8g0335141 33.681 288 151 9 193 466 203 464 8.57e-39 146
Msa1093420 MtrunA17_Chr5g0442511 25.051 495 283 14 4 470 59 493 9.41e-39 147
Msa1093420 MtrunA17_Chr5g0442561 25.889 506 296 19 2 472 13 474 1.70e-38 145
Msa1093420 MtrunA17_Chr1g0207861 26.195 481 315 19 2 470 16 468 2.81e-38 145
Msa1093420 MtrunA17_Chr6g0462541 32.734 278 143 6 201 466 214 459 3.02e-38 145
Msa1093420 MtrunA17_Chr6g0462521 36.466 266 135 7 201 459 201 439 3.14e-38 145
Msa1093420 MtrunA17_Chr8g0365811 24.845 483 321 17 2 470 503 957 3.41e-38 148
Msa1093420 MtrunA17_Chr8g0365811 24.744 489 318 18 2 470 17 475 5.03e-34 136
Msa1093420 MtrunA17_Chr1g0161351 25.577 477 319 16 4 470 47 497 3.65e-38 145
Msa1093420 MtrunA17_Chr5g0431441 25.726 482 301 15 4 471 28 466 4.33e-38 144
Msa1093420 MtrunA17_Chr6g0453951 25.941 505 297 19 2 471 65 527 7.04e-38 145
Msa1093420 MtrunA17_Chr6g0454331 26.693 502 307 17 4 477 17 485 9.19e-38 144
Msa1093420 MtrunA17_Chr8g0334851 29.356 419 235 14 75 466 81 465 9.26e-38 144
Msa1093420 MtrunA17_Chr6g0454121 27.009 448 249 17 63 471 71 479 9.38e-38 144
Msa1093420 MtrunA17_Chr8g0361371 27.219 507 274 18 3 467 14 467 1.14e-37 144
Msa1093420 MtrunA17_Chr7g0217881 27.604 384 227 12 100 471 118 462 1.47e-37 143
Msa1093420 MtrunA17_Chr6g0449931 27.291 491 282 19 20 466 4 463 1.82e-37 143
Msa1093420 MtrunA17_Chr7g0249981 26.205 477 301 16 4 472 35 468 2.92e-37 142
Msa1093420 MtrunA17_Chr7g0232401 35.766 274 134 11 201 459 210 456 4.00e-37 142
Msa1093420 MtrunA17_Chr3g0118721 31.852 270 166 5 202 471 39 290 4.82e-37 137
Msa1093420 MtrunA17_Chr7g0275511 26.775 493 285 22 4 466 25 471 7.32e-37 141
Msa1093420 MtrunA17_Chr6g0454151 27.143 420 248 16 76 471 93 478 1.26e-36 140
Msa1093420 MtrunA17_Chr8g0339441 37.037 216 112 4 261 463 218 422 1.75e-36 139
Msa1093420 MtrunA17_Chr4g0053501 26.337 486 299 19 4 471 21 465 4.12e-36 139
Msa1093420 MtrunA17_Chr8g0377941 30.721 319 187 9 158 472 175 463 4.55e-36 139
Msa1093420 MtrunA17_Chr7g0232341 28.310 491 286 21 2 466 12 462 6.50e-36 139
Msa1093420 MtrunA17_Chr6g0454141 25.352 497 310 18 2 471 18 480 7.29e-36 139
Msa1093420 MtrunA17_Chr6g0454351 26.585 489 293 20 4 471 22 465 7.30e-36 138
Msa1093420 MtrunA17_Chr8g0380531 28.392 479 276 18 4 463 20 450 1.25e-35 137
Msa1093420 MtrunA17_Chr7g0218791 26.667 465 285 17 4 457 15 434 1.57e-35 137
Msa1093420 MtrunA17_Chr7g0232331 33.218 289 155 9 201 475 207 471 1.73e-35 137
Msa1093420 MtrunA17_Chr6g0454261 24.900 502 314 17 4 477 20 486 2.03e-35 137
Msa1093420 MtrunA17_Chr6g0454131 27.098 417 250 17 78 471 94 479 2.21e-35 137
Msa1093420 MtrunA17_Chr5g0401721 24.180 488 322 14 2 472 16 472 4.76e-35 136
Msa1093420 MtrunA17_Chr6g0452771 28.217 443 251 17 63 471 71 480 4.98e-35 136
Msa1093420 MtrunA17_Chr7g0232311 32.440 336 170 14 151 467 163 460 5.64e-35 135
Msa1093420 MtrunA17_Chr6g0454201 26.389 504 292 17 4 471 21 481 6.71e-35 136
Msa1093420 MtrunA17_Chr8g0382021 30.986 284 167 9 196 470 225 488 1.34e-34 135
Msa1093420 MtrunA17_Chr8g0336741 29.688 320 182 10 167 466 171 467 1.81e-34 134
Msa1093420 MtrunA17_Chr7g0241801 28.172 465 232 19 1 442 16 401 2.69e-34 133
Msa1093420 MtrunA17_Chr7g0218841 25.052 479 287 16 4 467 16 437 3.07e-34 133
Msa1093420 MtrunA17_Chr1g0153451 32.143 280 149 8 201 466 207 459 3.08e-34 134
Msa1093420 MtrunA17_Chr7g0241781 27.212 452 276 15 1 447 16 419 3.66e-34 133
Msa1093420 MtrunA17_Chr6g0454181 24.797 492 315 16 4 471 20 480 3.84e-34 134
Msa1093420 MtrunA17_Chr1g0207931 29.304 273 178 6 198 470 240 497 4.24e-34 134
Msa1093420 MtrunA17_Chr7g0218831 25.052 479 286 15 4 467 16 436 4.58e-34 133
Msa1093420 MtrunA17_Chr6g0454191 25.050 499 306 17 4 471 20 481 4.73e-34 134
Msa1093420 MtrunA17_Chr8g0336731 29.375 320 177 11 171 467 194 487 4.93e-34 134
Msa1093420 MtrunA17_Chr4g0053321 27.515 487 292 18 4 471 36 480 5.68e-34 134
Msa1093420 MtrunA17_Chr7g0218821 36.715 207 111 6 261 467 261 447 6.25e-34 132
Msa1093420 MtrunA17_Chr8g0334831 26.602 515 276 18 3 467 13 475 7.97e-34 133
Msa1093420 MtrunA17_Chr7g0249931 24.587 484 308 14 2 473 48 486 1.34e-33 132
Msa1093420 MtrunA17_Chr6g0454211 27.912 455 249 18 63 477 358 773 1.64e-33 134
Msa1093420 MtrunA17_Chr6g0454211 29.885 174 83 6 201 373 101 236 2.95e-14 75.5
Msa1093420 MtrunA17_Chr5g0403641 33.103 290 150 9 201 469 235 501 2.17e-33 132
Msa1093420 MtrunA17_Chr1g0153461 37.037 216 115 5 261 466 4 208 2.86e-33 125
Msa1093420 MtrunA17_Chr6g0454291 27.703 444 252 18 63 471 68 477 3.93e-33 131
Msa1093420 MtrunA17_Chr3g0106231 24.160 476 304 14 4 472 28 453 4.55e-33 130
Msa1093420 MtrunA17_Chr3g0118751 25.102 490 289 18 2 471 14 445 4.82e-33 130
Msa1093420 MtrunA17_Chr4g0042891 28.306 484 291 18 4 468 17 463 5.88e-33 130
Msa1093420 MtrunA17_Chr7g0250001 26.186 485 293 19 2 471 14 448 9.40e-33 129
Msa1093420 MtrunA17_Chr6g0453961 25.253 495 310 19 4 471 29 490 1.08e-32 130
Msa1093420 MtrunA17_Chr3g0118661 25.400 500 299 18 2 469 21 478 2.11e-32 129
Msa1093420 MtrunA17_Chr5g0423981 25.364 481 291 18 4 471 20 445 3.55e-32 127
Msa1093420 MtrunA17_Chr8g0367221 25.316 474 292 12 1 451 1295 1729 1.07e-31 129
Msa1093420 MtrunA17_Chr8g0367221 26.368 402 259 13 1 388 805 1183 1.19e-28 120
Msa1093420 MtrunA17_Chr8g0367221 24.631 406 260 12 1 388 19 396 7.67e-28 117
Msa1093420 MtrunA17_Chr3g0079711 35.859 198 105 3 287 472 3 190 1.30e-31 120
Msa1093420 MtrunA17_Chr4g0072761 31.329 316 170 12 157 468 178 450 1.62e-31 126
Msa1093420 MtrunA17_Chr7g0249961 32.870 216 126 6 258 473 66 262 6.78e-31 120
Msa1093420 MtrunA17_Chr5g0393591 23.125 480 289 15 2 470 25 435 1.21e-30 123
Msa1093420 MtrunA17_Chr6g0454221 30.769 247 140 6 229 469 8 229 1.70e-30 120
Msa1093420 MtrunA17_Chr5g0432731 26.154 325 202 7 161 473 1 299 2.20e-30 119
Msa1093420 MtrunA17_Chr5g0426401 30.935 278 165 10 201 474 60 314 3.24e-30 119
Msa1093420 MtrunA17_Chr7g0218811 33.333 207 118 6 261 467 260 446 3.70e-30 122
Msa1093420 MtrunA17_Chr6g0464091 28.111 434 226 17 1 394 25 412 3.98e-30 122
Msa1093420 MtrunA17_Chr6g0454271 29.749 279 167 8 203 477 40 293 4.82e-30 118
Msa1093420 MtrunA17_Chr6g0454251 29.426 401 229 18 4 373 17 394 5.04e-30 120
Msa1093420 MtrunA17_Chr8g0336251 25.686 401 266 11 2 389 15 396 6.46e-30 121
Msa1093420 MtrunA17_Chr8g0336321 25.686 401 266 11 2 389 15 396 7.05e-30 121
Msa1093420 MtrunA17_Chr4g0042931 28.392 479 273 20 4 457 17 450 1.08e-29 121
Msa1093420 MtrunA17_Chr4g0072771 26.915 483 279 20 5 468 36 463 5.34e-29 119
Msa1093420 MtrunA17_Chr7g0232351 36.087 230 112 9 163 373 165 378 8.81e-29 117
Msa1093420 MtrunA17_Chr3g0106251 27.941 272 167 6 202 472 52 295 2.56e-28 114
Msa1093420 MtrunA17_Chr6g0454371 31.959 194 102 5 284 471 2 171 4.97e-28 109
Msa1093420 MtrunA17_Chr6g0454171 28.374 289 160 10 191 471 61 310 8.74e-28 112
Msa1093420 MtrunA17_Chr1g0196851 25.474 475 268 16 1 445 56 474 4.61e-27 114
Msa1093420 MtrunA17_Chr7g0243921 33.721 172 111 2 2 173 48 216 5.71e-27 108
Msa1093420 MtrunA17_Chr6g0466831 26.087 414 253 12 1 394 25 405 1.84e-25 108
Msa1093420 MtrunA17_Chr4g0029131 25.054 463 282 17 1 445 19 434 2.09e-25 109
Msa1093420 MtrunA17_Chr4g0040711 26.506 498 287 20 1 472 15 459 2.55e-25 108
Msa1093420 MtrunA17_Chr5g0448551 27.716 451 256 23 2 434 15 413 5.18e-25 107
Msa1093420 MtrunA17_Chr6g0466841 25.604 414 255 12 1 394 25 405 5.46e-25 107
Msa1093420 MtrunA17_Chr4g0040691 25.482 467 284 15 1 448 15 436 6.77e-25 107
Msa1093420 MtrunA17_Chr4g0039881 24.466 421 245 15 4 394 2 379 1.19e-24 106
Msa1093420 MtrunA17_Chr2g0302851 26.303 422 242 16 1 394 23 403 2.23e-24 105
Msa1093420 MtrunA17_Chr8g0355011 27.273 385 215 15 100 477 42 368 2.39e-24 104
Msa1093420 MtrunA17_Chr7g0243731 57.746 71 30 0 331 401 6 76 1.68e-23 94.0
Msa1093420 MtrunA17_Chr4g0029151 33.679 193 113 4 258 445 260 442 2.54e-23 102
Msa1093420 MtrunA17_Chr2g0278721 26.464 427 249 17 1 394 524 918 4.52e-23 103
Msa1093420 MtrunA17_Chr2g0278721 24.688 401 266 13 1 390 22 397 1.17e-21 98.6
Msa1093420 MtrunA17_Chr6g0482061 26.572 493 278 20 4 458 21 467 1.32e-22 100
Msa1093420 MtrunA17_Chr5g0431431 30.256 195 105 4 202 391 156 324 2.14e-22 98.6
Msa1093420 MtrunA17_Chr4g0069611 24.473 474 277 20 1 450 22 438 2.42e-22 99.4
Msa1093420 MtrunA17_Chr2g0283041 25.176 425 283 12 1 417 14 411 2.45e-22 99.4
Msa1093420 MtrunA17_Chr2g0278741 25.054 463 284 18 1 444 104 522 3.16e-22 99.8
Msa1093420 MtrunA17_Chr8g0337381 39.259 135 67 4 333 466 1 121 7.57e-22 91.3
Msa1093420 MtrunA17_Chr8g0336261 34.591 159 74 5 284 435 2 137 8.05e-22 91.3
Msa1093420 MtrunA17_Chr3g0092031 31.841 201 101 6 259 450 2 175 2.28e-20 89.4
Msa1093420 MtrunA17_Chr7g0272701 32.414 145 88 3 69 207 11 151 3.47e-20 87.0
Msa1093420 MtrunA17_Chr1g0207881 32.353 170 92 7 306 470 233 384 4.60e-20 92.0
Msa1093420 MtrunA17_Chr5g0427571 29.082 196 121 4 202 389 45 230 1.60e-19 89.0
Msa1093420 MtrunA17_Chr2g0319731 25.895 475 278 21 1 453 32 454 1.52e-18 88.2
Msa1093420 MtrunA17_Chr2g0319801 36.979 192 107 6 263 453 259 437 3.84e-18 86.7
Msa1093420 MtrunA17_Chr2g0321331 44.444 99 54 1 268 366 91 188 2.11e-17 82.4
Msa1093420 MtrunA17_Chr7g0243721 37.956 137 78 4 171 306 5 135 6.30e-17 77.8
Msa1093420 MtrunA17_Chr2g0319791 26.154 455 293 17 1 448 15 433 7.59e-17 82.8
Msa1093420 MtrunA17_Chr2g0319761 24.101 473 294 18 1 455 15 440 3.03e-16 80.9
Msa1093420 MtrunA17_Chr6g0454231 32.867 143 74 3 335 473 97 221 4.04e-16 80.5
Msa1093420 MtrunA17_Chr7g0231651 27.841 176 122 3 2 173 22 196 1.15e-14 73.2
Msa1093420 MtrunA17_Chr2g0319751 33.854 192 114 5 258 448 731 910 3.70e-14 75.1
Msa1093420 MtrunA17_Chr2g0319751 24.516 465 264 21 1 448 15 409 1.02e-12 70.9
Msa1093420 MtrunA17_Chr5g0442501 22.082 317 206 10 4 307 15 303 1.03e-13 72.0
Msa1093420 MtrunA17_Chr7g0265071 51.613 62 29 1 414 474 1 62 2.77e-12 62.0
Msa1093420 MtrunA17_Chr6g0453981 29.851 134 87 4 201 333 101 228 3.14e-11 63.2
Msa1093420 MtrunA17_Chr4g0066231 38.462 78 47 1 372 449 1 77 7.66e-11 58.2
Msa1093420 MtrunA17_Chr4g0066241 35.537 121 63 5 156 275 43 149 9.42e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093420 AT2G36780.1 47.292 480 237 5 1 473 21 491 6.67e-158 457
Msa1093420 AT2G36770.1 46.639 476 242 5 1 471 21 489 1.15e-154 449
Msa1093420 AT2G36760.1 46.973 479 236 4 1 471 21 489 1.27e-154 449
Msa1093420 AT2G36800.1 47.193 481 237 6 1 473 19 490 2.21e-154 448
Msa1093420 AT2G36750.1 45.417 480 247 4 1 474 17 487 1.05e-151 441
Msa1093420 AT2G36790.1 47.083 480 238 5 1 473 20 490 5.86e-147 429
Msa1093420 AT3G53160.1 45.436 482 241 10 1 472 15 484 7.22e-144 421
Msa1093420 AT3G53150.1 45.287 488 246 8 1 472 29 511 9.59e-140 412
Msa1093420 AT2G15490.3 40.947 486 249 12 1 470 14 477 8.21e-115 347
Msa1093420 AT2G15480.1 40.123 486 253 11 1 470 17 480 2.00e-114 346
Msa1093420 AT2G15490.1 40.900 489 248 13 1 470 14 480 3.48e-114 345
Msa1093420 AT2G15480.2 39.596 495 253 11 1 470 17 490 9.21e-114 344
Msa1093420 AT4G34131.1 42.946 482 244 14 1 470 17 479 1.06e-111 338
Msa1093420 AT4G34138.1 40.333 481 256 12 1 470 18 478 8.96e-107 326
Msa1093420 AT4G34135.1 42.149 484 246 15 1 470 18 481 3.17e-102 314
Msa1093420 AT5G14860.1 33.603 494 271 18 1 470 15 475 5.01e-67 223
Msa1093420 AT1G10400.1 32.033 487 276 20 1 470 14 462 1.16e-64 216
Msa1093420 AT2G16890.2 31.762 488 279 19 1 470 16 467 1.06e-61 209
Msa1093420 AT5G12890.1 31.352 488 272 18 1 459 17 470 6.65e-60 204
Msa1093420 AT4G34135.2 38.154 325 179 10 1 313 18 332 4.99e-55 187
Msa1093420 AT2G16890.3 31.757 444 251 17 1 427 16 424 1.49e-52 183
Msa1093420 AT1G73880.1 29.495 495 279 18 2 473 22 469 1.09e-50 179
Msa1093420 AT1G06000.1 28.247 485 259 15 4 470 20 433 3.85e-50 177
Msa1093420 AT1G22400.1 29.459 499 286 17 2 471 21 482 2.73e-48 173
Msa1093420 AT5G03490.1 27.122 483 291 12 2 470 27 462 3.23e-48 172
Msa1093420 AT1G24100.1 31.687 486 265 16 4 470 21 458 1.21e-47 171
Msa1093420 AT2G30150.1 27.292 480 286 16 4 470 7 436 1.05e-46 168
Msa1093420 AT2G31750.1 31.042 480 277 18 4 471 18 455 1.86e-46 167
Msa1093420 AT1G22360.1 29.600 500 283 19 2 471 18 478 2.44e-46 168
Msa1093420 AT1G22340.1 28.484 488 305 14 2 471 21 482 2.54e-46 168
Msa1093420 AT2G30150.2 27.292 480 286 16 4 470 23 452 3.10e-46 167
Msa1093420 AT1G78270.1 27.310 487 311 12 2 471 21 481 3.83e-46 167
Msa1093420 AT1G51210.1 30.123 405 240 13 2 398 28 397 3.83e-46 166
Msa1093420 AT1G22380.1 28.252 492 300 16 2 471 21 481 4.71e-46 167
Msa1093420 AT2G31750.2 30.480 479 281 16 4 471 18 455 5.08e-46 167
Msa1093420 AT1G07260.1 28.834 489 299 14 2 471 14 472 1.30e-45 166
Msa1093420 AT3G16520.3 28.075 374 229 10 106 469 115 458 1.61e-45 165
Msa1093420 AT2G18570.1 28.601 486 280 20 4 463 15 459 2.34e-45 165
Msa1093420 AT2G29740.1 30.200 500 275 21 3 470 17 474 9.84e-45 163
Msa1093420 AT1G07250.1 34.688 320 175 11 158 472 184 474 4.60e-44 161
Msa1093420 AT2G29730.1 27.600 500 285 19 4 474 15 466 4.65e-44 161
Msa1093420 AT3G11340.1 28.131 487 275 18 4 473 19 447 1.15e-43 160
Msa1093420 AT5G49690.1 28.846 468 262 17 1 448 17 433 8.22e-43 157
Msa1093420 AT2G43840.2 28.810 479 280 18 4 470 17 446 1.92e-42 156
Msa1093420 AT5G26310.1 26.626 492 281 19 4 463 17 460 2.49e-42 157
Msa1093420 AT5G05870.1 28.364 483 284 18 4 470 18 454 2.51e-42 156
Msa1093420 AT2G43840.1 28.810 479 280 18 4 470 17 446 3.10e-42 156
Msa1093420 AT4G01070.1 25.813 492 290 14 4 466 18 463 6.53e-42 155
Msa1093420 AT3G16520.2 27.778 360 220 10 106 455 115 444 8.95e-42 154
Msa1093420 AT3G16520.1 27.855 359 219 10 107 455 116 444 1.05e-41 154
Msa1093420 AT2G29710.1 32.258 310 180 8 171 471 175 463 1.17e-41 155
Msa1093420 AT1G22360.2 27.655 499 282 17 2 471 18 466 1.51e-41 154
Msa1093420 AT1G01420.1 26.653 484 289 14 4 463 18 459 2.59e-41 154
Msa1093420 AT1G01420.2 26.653 484 289 14 4 463 21 462 2.94e-41 154
Msa1093420 AT4G15480.1 26.598 485 303 19 4 470 29 478 1.39e-40 152
Msa1093420 AT4G14090.1 26.971 482 290 17 2 469 21 454 1.46e-40 151
Msa1093420 AT1G05560.1 26.087 483 299 15 2 470 13 451 3.43e-40 150
Msa1093420 AT2G43820.1 28.571 476 285 18 4 470 17 446 4.87e-40 150
Msa1093420 AT1G05560.2 26.087 483 299 15 2 470 63 501 5.99e-40 151
Msa1093420 AT1G22370.2 27.959 490 299 16 2 471 21 476 6.01e-40 150
Msa1093420 AT4G15260.1 33.451 284 156 7 201 472 94 356 8.52e-40 147
Msa1093420 AT2G30140.1 26.096 479 296 15 4 472 23 453 1.98e-39 148
Msa1093420 AT3G02100.1 27.778 486 281 16 2 467 21 456 2.43e-39 148
Msa1093420 AT1G05675.1 28.085 470 292 12 2 463 14 445 3.07e-39 148
Msa1093420 AT1G05530.1 29.333 375 230 12 105 471 108 455 3.20e-39 148
Msa1093420 AT4G15550.1 28.198 383 230 13 101 469 121 472 4.04e-39 148
Msa1093420 AT1G05680.1 27.350 468 294 14 4 463 16 445 8.80e-39 146
Msa1093420 AT2G30140.2 26.250 480 293 17 4 472 23 452 1.36e-38 146
Msa1093420 AT3G21560.1 24.896 482 316 15 4 470 22 472 4.32e-38 145
Msa1093420 AT4G15280.1 27.912 498 294 20 4 472 14 475 4.82e-38 145
Msa1093420 AT3G21760.1 27.778 504 290 20 4 470 14 480 8.11e-38 144
Msa1093420 AT3G21790.1 27.163 497 300 19 4 470 14 478 9.06e-38 144
Msa1093420 AT4G15280.2 27.912 498 294 20 4 472 46 507 9.18e-38 145
Msa1093420 AT2G29750.1 31.627 332 189 10 147 472 176 475 9.24e-38 144
Msa1093420 AT1G07240.1 24.641 487 323 13 4 471 15 476 4.01e-37 142
Msa1093420 AT5G05860.1 27.629 485 283 16 4 473 19 450 4.98e-37 142
Msa1093420 AT3G21800.1 33.096 281 160 9 201 470 212 475 6.33e-37 142
Msa1093420 AT1G01390.1 26.316 494 279 18 4 463 18 460 2.80e-36 140
Msa1093420 AT1G01390.2 26.316 494 279 18 4 463 35 477 2.83e-36 140
Msa1093420 AT5G59590.1 25.581 473 293 15 2 463 18 442 3.71e-36 139
Msa1093420 AT3G50740.1 28.522 291 160 8 201 469 208 472 4.40e-36 139
Msa1093420 AT3G46670.1 25.941 478 285 14 2 463 17 441 8.65e-36 138
Msa1093420 AT2G18560.1 26.396 394 245 11 88 463 3 369 1.08e-35 136
Msa1093420 AT5G66690.1 25.344 509 295 19 4 474 17 478 1.71e-35 138
Msa1093420 AT2G23250.1 26.971 482 283 18 4 470 8 435 8.84e-35 135
Msa1093420 AT5G17030.1 28.986 276 163 8 199 473 215 458 9.88e-35 135
Msa1093420 AT4G15490.1 24.082 490 310 19 4 471 18 467 2.16e-34 135
Msa1093420 AT3G21780.1 27.320 388 232 13 108 472 110 470 4.79e-34 134
Msa1093420 AT4G15500.1 25.000 492 310 20 4 477 19 469 1.34e-33 132
Msa1093420 AT2G31790.1 27.140 479 283 17 4 463 18 449 2.02e-33 132
Msa1093420 AT3G46690.1 26.458 480 291 16 2 468 17 447 2.29e-33 131
Msa1093420 AT3G46660.1 26.069 491 290 16 2 473 22 458 4.40e-33 130
Msa1093420 AT5G59580.1 24.788 472 297 14 2 463 17 440 1.34e-32 129
Msa1093420 AT5G05900.1 25.410 488 285 15 4 470 18 447 1.84e-32 129
Msa1093420 AT2G23260.1 27.254 477 294 19 4 470 20 453 2.14e-32 129
Msa1093420 AT5G65550.1 25.679 405 241 9 1 381 16 384 2.98e-32 129
Msa1093420 AT3G46680.1 25.052 483 300 16 2 473 17 448 8.98e-32 127
Msa1093420 AT3G21750.1 24.260 507 296 15 4 472 14 470 1.31e-31 127
Msa1093420 AT3G46700.1 26.260 377 232 11 105 470 103 444 2.49e-31 125
Msa1093420 AT4G36770.1 25.103 486 275 16 4 453 14 446 4.09e-31 125
Msa1093420 AT5G05880.1 26.971 482 286 18 4 470 18 448 5.44e-31 125
Msa1093420 AT5G05890.1 26.804 485 287 17 4 470 18 452 7.50e-31 124
Msa1093420 AT2G22590.1 24.190 463 310 12 1 451 22 455 8.78e-31 124
Msa1093420 AT1G22370.1 29.352 293 185 7 180 471 35 306 1.48e-30 120
Msa1093420 AT3G55700.1 26.518 494 291 19 3 477 17 457 1.71e-30 123
Msa1093420 AT3G46650.1 24.145 468 289 13 2 463 18 425 1.82e-30 123
Msa1093420 AT5G17040.2 28.148 270 163 7 202 471 100 338 3.66e-30 120
Msa1093420 AT5G17050.1 29.643 280 154 9 199 473 218 459 3.76e-30 122
Msa1093420 AT5G17040.1 24.595 370 240 11 105 471 107 440 1.33e-29 120
Msa1093420 AT5G38040.1 23.868 486 299 15 2 470 18 449 2.49e-29 120
Msa1093420 AT5G38010.1 25.355 493 287 19 2 470 18 453 3.73e-29 119
Msa1093420 AT2G15490.2 35.519 183 96 5 1 167 14 190 4.24e-28 113
Msa1093420 AT2G26480.1 23.270 477 309 14 4 471 18 446 4.33e-28 116
Msa1093420 AT3G55710.1 26.078 487 304 19 4 477 18 461 5.52e-27 113
Msa1093420 AT2G36970.1 23.673 490 312 18 4 470 20 470 9.58e-27 113
Msa1093420 AT3G46720.1 26.810 373 223 11 105 468 107 438 1.33e-26 112
Msa1093420 AT2G28080.1 25.352 497 302 20 4 477 28 478 1.57e-26 112
Msa1093420 AT1G64910.1 23.991 446 289 13 1 437 13 417 7.08e-26 110
Msa1093420 AT1G30530.1 23.722 489 292 17 4 471 23 451 8.73e-26 110
Msa1093420 AT2G16890.4 29.430 316 184 14 1 299 16 309 4.50e-24 102
Msa1093420 AT2G16890.1 29.430 316 184 14 1 299 16 309 4.50e-24 102
Msa1093420 AT5G53990.1 24.444 450 280 14 1 441 13 411 6.74e-24 104
Msa1093420 AT4G27570.1 24.017 483 307 16 1 473 14 446 2.30e-23 102
Msa1093420 AT3G22250.1 25.397 504 272 24 2 462 16 458 2.45e-23 102
Msa1093420 AT5G54060.1 24.040 495 305 20 1 473 20 465 2.02e-22 100
Msa1093420 AT4G27560.1 24.017 483 307 17 1 473 14 446 3.37e-22 99.4
Msa1093420 AT3G29630.1 22.272 449 294 12 4 444 16 417 4.81e-22 99.0
Msa1093420 AT1G64920.1 23.517 489 308 20 1 475 13 449 1.41e-21 97.4
Msa1093420 AT5G54010.1 24.429 438 281 14 4 434 16 410 3.12e-20 93.6
Msa1093420 AT5G37950.2 27.174 276 172 11 105 373 84 337 4.67e-20 91.7
Msa1093420 AT2G22930.1 23.543 446 283 13 1 438 13 408 7.10e-20 92.4
Msa1093420 AT5G37950.1 27.305 282 170 12 105 373 84 343 1.15e-19 90.5
Msa1093420 AT3G29630.2 22.676 441 276 13 4 444 16 391 8.09e-19 89.0
Msa1093420 AT4G09500.2 23.661 448 280 15 1 438 13 408 2.59e-18 87.4
Msa1093420 AT1G50580.1 22.707 458 279 14 4 444 16 415 9.99e-18 85.9
Msa1093420 AT4G09500.1 23.182 440 267 12 1 438 13 383 3.62e-17 84.0
Msa1093420 AT4G01070.2 23.853 327 195 10 4 311 18 309 2.26e-13 71.6

Find 100 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTTAATGTGAATAATT+TGG 0.117677 7_3:+13345402 None:intergenic
TCCAGTTTCATTATCAAATA+AGG 0.212471 7_3:-13344859 Msa1093420:CDS
TAATTGAATTTCTCTATCTA+TGG 0.294249 7_3:+13345436 None:intergenic
TGAAGGAAAATTTATTGTTC+CGG 0.294582 7_3:-13345093 Msa1093420:CDS
AGAGGTTGGGTTGGGATTAG+AGG 0.312310 7_3:-13344682 Msa1093420:CDS
TCCTTATTTGATAATGAAAC+TGG 0.320618 7_3:+13344858 None:intergenic
TGTTGACACTTTACCTTCAA+TGG 0.339937 7_3:-13345342 Msa1093420:CDS
GAAGGAAAATTTATTGTTCC+GGG 0.339977 7_3:-13345092 Msa1093420:CDS
GCTCAAAGTGCTGTGCATTT+AGG 0.340363 7_3:-13344351 Msa1093420:CDS
GAGTAACTGCTTATAAAGTA+TGG 0.342270 7_3:-13344890 Msa1093420:CDS
GAAATTACACAACTTGGAAT+TGG 0.357629 7_3:+13345245 None:intergenic
ATGAAGAAAAGGAAAAGATT+AGG 0.360196 7_3:-13344254 Msa1093420:CDS
TGAAGAAAAGGAAAAGATTA+GGG 0.371117 7_3:-13344253 Msa1093420:CDS
TCAATTTGATCGGGCATTCC+CGG 0.376428 7_3:+13345074 None:intergenic
TTGCGAAAATGTCAACTTCC+AGG 0.378836 7_3:-13345050 Msa1093420:CDS
GAAGGAAGGGTGAAGAATAA+AGG 0.382587 7_3:-13344576 Msa1093420:CDS
TTTAATAATATTCCTAATGA+AGG 0.383326 7_3:-13345110 Msa1093420:CDS
TGCATATGGAAGAGAGGAAA+TGG 0.391099 7_3:-13344625 Msa1093420:CDS
ATAGATAGAGAAATTCAATT+AGG 0.405701 7_3:-13345434 Msa1093420:CDS
ATTAGCACGTCGCAAAGTTA+AGG 0.411952 7_3:-13345504 Msa1093420:CDS
CAATTGAAAGAGGTTGGGTT+GGG 0.416863 7_3:-13344690 Msa1093420:CDS
CTTCCAGGGTTATTTAATCC+AGG 0.435832 7_3:-13345035 Msa1093420:CDS
TTATCTGAAATTACACAACT+TGG 0.438024 7_3:+13345239 None:intergenic
CATTGGAAGGGATTTCTTGT+GGG 0.440305 7_3:-13344464 Msa1093420:CDS
ATACTATCACACAAAGCAAT+AGG 0.441436 7_3:-13344519 Msa1093420:CDS
GAGAAATGGTTATATGAAGA+AGG 0.449752 7_3:-13344603 Msa1093420:CDS
TTGGACATTAAATCCATTGA+AGG 0.456900 7_3:+13345329 None:intergenic
GTCCCGTCGAATATAATTCT+CGG 0.460820 7_3:+13345173 None:intergenic
ATGAAGAAGGGTTTGAAGGA+AGG 0.463468 7_3:-13344590 Msa1093420:CDS
GATGCTATTGAGAAGGTAAT+GGG 0.465667 7_3:-13344282 Msa1093420:CDS
CCTCAACAATTGAAAGAGGT+TGG 0.469473 7_3:-13344696 Msa1093420:CDS
TTTCGCAACTCAATTTGATC+GGG 0.472688 7_3:+13345065 None:intergenic
TCAACACTTTCACATCCCTC+TGG 0.473790 7_3:+13345359 None:intergenic
AACTTTGCCATGTCTACCAT+TGG 0.474256 7_3:+13345527 None:intergenic
AGATGCTATTGAGAAGGTAA+TGG 0.474911 7_3:-13344283 Msa1093420:CDS
CTCAACAATTGAAAGAGGTT+GGG 0.475910 7_3:-13344695 Msa1093420:CDS
AGTTAGATAAATTTGAAAGA+GGG 0.477235 7_3:-13344833 Msa1093420:CDS
TGGGATTAGAGGAAACAAAA+AGG 0.479739 7_3:-13344671 Msa1093420:CDS
TGAAGAAGGGTTTGAAGGAA+GGG 0.480479 7_3:-13344589 Msa1093420:CDS
GAAGAGAGGAAATGGAGAAA+TGG 0.481479 7_3:-13344617 Msa1093420:CDS
TCTGTTATTTATGTTTGTCT+TGG 0.484200 7_3:-13344738 Msa1093420:CDS
TTGAATTTCTCTATCTATGG+TGG 0.486239 7_3:+13345439 None:intergenic
CCTCTCAACACCCAAATGAA+TGG 0.488777 7_3:+13344648 None:intergenic
AAATTTCCAAGTGTAGAGTC+TGG 0.489017 7_3:-13345386 Msa1093420:CDS
TTCTCAAGTGGCTTGAATTG+TGG 0.494280 7_3:-13344770 Msa1093420:CDS
TTATATGAAGAAGGGTTTGA+AGG 0.495951 7_3:-13344594 Msa1093420:CDS
TTCCGAGAATTATATTCGAC+GGG 0.499717 7_3:-13345175 Msa1093420:CDS
AATGGGTGAGGATGAAGAAA+AGG 0.501088 7_3:-13344265 Msa1093420:CDS
ACATTGGAAGGGATTTCTTG+TGG 0.509026 7_3:-13344465 Msa1093420:CDS
CCAACCTCTTTCAATTGTTG+AGG 0.511503 7_3:+13344696 None:intergenic
TTGTACTTTAGCTTTGTCCT+TGG 0.513746 7_3:+13344130 None:intergenic
TTCCAGGGTTATTTAATCCA+GGG 0.514909 7_3:-13345034 Msa1093420:CDS
GAGTTAGATAAATTTGAAAG+AGG 0.515198 7_3:-13344834 Msa1093420:CDS
ACCTGGTCATCTTCTTCCAA+TGG 0.515469 7_3:-13345543 Msa1093420:CDS
GAGAGGTGCATATGGAAGAG+AGG 0.519682 7_3:-13344631 Msa1093420:CDS
ACAATTGAAAGAGGTTGGGT+TGG 0.519761 7_3:-13344691 Msa1093420:CDS
AACATAGGAAATGTTACTAA+AGG 0.523600 7_3:+13344438 None:intergenic
GAAAATATGCTGACATGGCA+AGG 0.525519 7_3:-13344221 Msa1093420:CDS
TGGGTGTTGAGAGGTGCATA+TGG 0.525587 7_3:-13344639 Msa1093420:CDS
AGAAATGGTTATATGAAGAA+GGG 0.526730 7_3:-13344602 Msa1093420:CDS
CAACACTTTCACATCCCTCT+GGG 0.526918 7_3:+13345360 None:intergenic
GGATGGAATTCAACATTGGA+AGG 0.530413 7_3:-13344477 Msa1093420:CDS
CCATTCATTTGGGTGTTGAG+AGG 0.531082 7_3:-13344648 Msa1093420:CDS
AAAATATTCTTATGGTGTAG+TGG 0.531745 7_3:-13344961 Msa1093420:CDS
ATTGAAATCGAATGGAATTG+AGG 0.533099 7_3:+13345462 None:intergenic
TTGAAATCGAATGGAATTGA+GGG 0.539865 7_3:+13345463 None:intergenic
TCAATTGTTGAGGTGTTGCA+CGG 0.547032 7_3:+13344706 None:intergenic
TAAAACTGCTCAGCAAACAT+AGG 0.548678 7_3:+13344423 None:intergenic
ACATAAATAACAGAATTTGA+AGG 0.550993 7_3:+13344747 None:intergenic
TCCAGGGTTATTTAATCCAG+GGG 0.558050 7_3:-13345033 Msa1093420:CDS
TCCCCTGGATTAAATAACCC+TGG 0.558176 7_3:+13345032 None:intergenic
TATGGTGGATTGAAATCGAA+TGG 0.562074 7_3:+13345454 None:intergenic
AACACCTCAACAATTGAAAG+AGG 0.567338 7_3:-13344700 Msa1093420:CDS
ATTGGAAGGGATTTCTTGTG+GGG 0.568014 7_3:-13344463 Msa1093420:CDS
TGCGAAAATGTCAACTTCCA+GGG 0.572809 7_3:-13345049 Msa1093420:CDS
TTCATCCCCTTAATGGCACC+TGG 0.573392 7_3:-13345560 None:intergenic
TGTTAGAGATGCTATTGAGA+AGG 0.573533 7_3:-13344289 Msa1093420:CDS
GTTCCGAGAATTATATTCGA+CGG 0.581011 7_3:-13345176 Msa1093420:CDS
GGGATTCCAGACTCTACACT+TGG 0.583047 7_3:+13345380 None:intergenic
GTGGTGCAAGTTGTGAAGAA+TGG 0.583841 7_3:-13344387 Msa1093420:CDS
ACCATTGGAAGAAGATGACC+AGG 0.585589 7_3:+13345542 None:intergenic
AGCTAGAAAATATGCTGACA+TGG 0.587356 7_3:-13344226 Msa1093420:CDS
TCGAATGGAATTGAGGGGTG+TGG 0.587585 7_3:+13345469 None:intergenic
TATTGAGAAGGTAATGGGTG+AGG 0.599030 7_3:-13344277 Msa1093420:CDS
GCAAGGAAAGCAATAGAAGA+AGG 0.599917 7_3:-13344204 Msa1093420:CDS
GCTTATAAAGTATGGTGTGT+TGG 0.599933 7_3:-13344882 Msa1093420:CDS
TGTGAAGAATGGTGTAAGTG+TGG 0.608769 7_3:-13344376 Msa1093420:CDS
GATGGAATTCAACATTGGAA+GGG 0.609464 7_3:-13344476 Msa1093420:CDS
AATATGATAAAATTCTCAAG+TGG 0.617092 7_3:-13344782 Msa1093420:CDS
TTGTGGATGGAATTCAACAT+TGG 0.619014 7_3:-13344481 Msa1093420:CDS
TCTTCTTCCAATGGTAGACA+TGG 0.623180 7_3:-13345534 Msa1093420:CDS
CAATTAGTAGAGTCATGTTG+CGG 0.638293 7_3:+13344169 None:intergenic
AAGTGCTGTGCATTTAGGAG+AGG 0.645377 7_3:-13344346 Msa1093420:CDS
TGTGATAGTATCAACACTTG+TGG 0.647114 7_3:+13344531 None:intergenic
GAAGATATAATAGATCTCCA+AGG 0.653989 7_3:-13344147 Msa1093420:CDS
GTGAAGAATGGTGTAAGTGT+GGG 0.654875 7_3:-13344375 Msa1093420:CDS
GTAGAGTCTGGAATCCCAGA+GGG 0.665040 7_3:-13345374 Msa1093420:CDS
TGAAATCGAATGGAATTGAG+GGG 0.680004 7_3:+13345464 None:intergenic
AGGAAAGCAATAGAAGAAGG+TGG 0.700077 7_3:-13344201 Msa1093420:CDS
TGTAGAGTCTGGAATCCCAG+AGG 0.756475 7_3:-13345375 Msa1093420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATTTAATGTGAATAATT+TGG + chr7_3:13344286-13344305 None:intergenic 15.0%
!! TTTAATAATATTCCTAATGA+AGG - chr7_3:13344575-13344594 Msa1093420:CDS 15.0%
!! ATAGAAGAAAAATATTCTTA+TGG - chr7_3:13344716-13344735 Msa1093420:CDS 15.0%
!!! AATAAAGGTTTTTTGATAAA+GGG - chr7_3:13345124-13345143 Msa1093420:CDS 15.0%
!! GAAATTTAATGTGAATAATT+TGG + chr7_3:13344286-13344305 None:intergenic 15.0%
!! TTTAATAATATTCCTAATGA+AGG - chr7_3:13344575-13344594 Msa1093420:CDS 15.0%
!! ATAGAAGAAAAATATTCTTA+TGG - chr7_3:13344716-13344735 Msa1093420:CDS 15.0%
!!! AATAAAGGTTTTTTGATAAA+GGG - chr7_3:13345124-13345143 Msa1093420:CDS 15.0%
!! TAATTGAATTTCTCTATCTA+TGG + chr7_3:13344252-13344271 None:intergenic 20.0%
!! ATAGATAGAGAAATTCAATT+AGG - chr7_3:13344251-13344270 Msa1093420:CDS 20.0%
!!! ACAATAAATTTTCCTTCATT+AGG + chr7_3:13344590-13344609 None:intergenic 20.0%
!! AGTTAGATAAATTTGAAAGA+GGG - chr7_3:13344852-13344871 Msa1093420:CDS 20.0%
!! AATATGATAAAATTCTCAAG+TGG - chr7_3:13344903-13344922 Msa1093420:CDS 20.0%
!! ACATAAATAACAGAATTTGA+AGG + chr7_3:13344941-13344960 None:intergenic 20.0%
!!! GAATAAAGGTTTTTTGATAA+AGG - chr7_3:13345123-13345142 Msa1093420:CDS 20.0%
!! TAATTGAATTTCTCTATCTA+TGG + chr7_3:13344252-13344271 None:intergenic 20.0%
!! ATAGATAGAGAAATTCAATT+AGG - chr7_3:13344251-13344270 Msa1093420:CDS 20.0%
!!! ACAATAAATTTTCCTTCATT+AGG + chr7_3:13344590-13344609 None:intergenic 20.0%
!! AGTTAGATAAATTTGAAAGA+GGG - chr7_3:13344852-13344871 Msa1093420:CDS 20.0%
!! AATATGATAAAATTCTCAAG+TGG - chr7_3:13344903-13344922 Msa1093420:CDS 20.0%
!! ACATAAATAACAGAATTTGA+AGG + chr7_3:13344941-13344960 None:intergenic 20.0%
!!! GAATAAAGGTTTTTTGATAA+AGG - chr7_3:13345123-13345142 Msa1093420:CDS 20.0%
! GCATAAAGCTATGTAAAAAT+TGG + chr7_3:13344378-13344397 None:intergenic 25.0%
!! TTATCTGAAATTACACAACT+TGG + chr7_3:13344449-13344468 None:intergenic 25.0%
! TGAAGGAAAATTTATTGTTC+CGG - chr7_3:13344592-13344611 Msa1093420:CDS 25.0%
!!! TTTAATTTTTTGTTTTCCCC+TGG + chr7_3:13344671-13344690 None:intergenic 25.0%
! GGGGAAAACAAAAAATTAAA+TGG - chr7_3:13344671-13344690 Msa1093420:CDS 25.0%
! AAAATATTCTTATGGTGTAG+TGG - chr7_3:13344724-13344743 Msa1093420:CDS 25.0%
!!! GGTTAATAGTTTTGAAGAAT+TGG - chr7_3:13344745-13344764 Msa1093420:CDS 25.0%
! TCCAGTTTCATTATCAAATA+AGG - chr7_3:13344826-13344845 Msa1093420:CDS 25.0%
!!! TCCTTATTTGATAATGAAAC+TGG + chr7_3:13344830-13344849 None:intergenic 25.0%
! GAGTTAGATAAATTTGAAAG+AGG - chr7_3:13344851-13344870 Msa1093420:CDS 25.0%
!! TCTGTTATTTATGTTTGTCT+TGG - chr7_3:13344947-13344966 Msa1093420:CDS 25.0%
! AGAAATGGTTATATGAAGAA+GGG - chr7_3:13345083-13345102 Msa1093420:CDS 25.0%
! AACATAGGAAATGTTACTAA+AGG + chr7_3:13345250-13345269 None:intergenic 25.0%
!! GTTTTATAATGAGAAAGTTG+TGG - chr7_3:13345279-13345298 Msa1093420:CDS 25.0%
! ATGAAGAAAAGGAAAAGATT+AGG - chr7_3:13345431-13345450 Msa1093420:CDS 25.0%
! TGAAGAAAAGGAAAAGATTA+GGG - chr7_3:13345432-13345451 Msa1093420:CDS 25.0%
! GCATAAAGCTATGTAAAAAT+TGG + chr7_3:13344378-13344397 None:intergenic 25.0%
!! TTATCTGAAATTACACAACT+TGG + chr7_3:13344449-13344468 None:intergenic 25.0%
! TGAAGGAAAATTTATTGTTC+CGG - chr7_3:13344592-13344611 Msa1093420:CDS 25.0%
!!! TTTAATTTTTTGTTTTCCCC+TGG + chr7_3:13344671-13344690 None:intergenic 25.0%
! GGGGAAAACAAAAAATTAAA+TGG - chr7_3:13344671-13344690 Msa1093420:CDS 25.0%
! AAAATATTCTTATGGTGTAG+TGG - chr7_3:13344724-13344743 Msa1093420:CDS 25.0%
!!! GGTTAATAGTTTTGAAGAAT+TGG - chr7_3:13344745-13344764 Msa1093420:CDS 25.0%
! TCCAGTTTCATTATCAAATA+AGG - chr7_3:13344826-13344845 Msa1093420:CDS 25.0%
!!! TCCTTATTTGATAATGAAAC+TGG + chr7_3:13344830-13344849 None:intergenic 25.0%
! GAGTTAGATAAATTTGAAAG+AGG - chr7_3:13344851-13344870 Msa1093420:CDS 25.0%
!! TCTGTTATTTATGTTTGTCT+TGG - chr7_3:13344947-13344966 Msa1093420:CDS 25.0%
! AGAAATGGTTATATGAAGAA+GGG - chr7_3:13345083-13345102 Msa1093420:CDS 25.0%
! AACATAGGAAATGTTACTAA+AGG + chr7_3:13345250-13345269 None:intergenic 25.0%
!! GTTTTATAATGAGAAAGTTG+TGG - chr7_3:13345279-13345298 Msa1093420:CDS 25.0%
! ATGAAGAAAAGGAAAAGATT+AGG - chr7_3:13345431-13345450 Msa1093420:CDS 25.0%
! TGAAGAAAAGGAAAAGATTA+GGG - chr7_3:13345432-13345451 Msa1093420:CDS 25.0%
TTGAAATCGAATGGAATTGA+GGG + chr7_3:13344225-13344244 None:intergenic 30.0%
ATTGAAATCGAATGGAATTG+AGG + chr7_3:13344226-13344245 None:intergenic 30.0%
TTGAATTTCTCTATCTATGG+TGG + chr7_3:13344249-13344268 None:intergenic 30.0%
TTGGACATTAAATCCATTGA+AGG + chr7_3:13344359-13344378 None:intergenic 30.0%
GAAATTACACAACTTGGAAT+TGG + chr7_3:13344443-13344462 None:intergenic 30.0%
GAAGGAAAATTTATTGTTCC+GGG - chr7_3:13344593-13344612 Msa1093420:CDS 30.0%
! TTTTCGCAACTCAATTTGAT+CGG + chr7_3:13344624-13344643 None:intergenic 30.0%
GAGTAACTGCTTATAAAGTA+TGG - chr7_3:13344795-13344814 Msa1093420:CDS 30.0%
AAACAAAAAGGCCATTCATT+TGG - chr7_3:13345026-13345045 Msa1093420:CDS 30.0%
AACAAAAAGGCCATTCATTT+GGG - chr7_3:13345027-13345046 Msa1093420:CDS 30.0%
GAGAAATGGTTATATGAAGA+AGG - chr7_3:13345082-13345101 Msa1093420:CDS 30.0%
TTATATGAAGAAGGGTTTGA+AGG - chr7_3:13345091-13345110 Msa1093420:CDS 30.0%
!!! AAGGTTTTTTGATAAAGGGT+TGG - chr7_3:13345128-13345147 Msa1093420:CDS 30.0%
!!! AGGTTTTTTGATAAAGGGTT+GGG - chr7_3:13345129-13345148 Msa1093420:CDS 30.0%
ATACTATCACACAAAGCAAT+AGG - chr7_3:13345166-13345185 Msa1093420:CDS 30.0%
!!! TTTTTTTGACACATTGTGGA+TGG - chr7_3:13345191-13345210 Msa1093420:CDS 30.0%
GAAGATATAATAGATCTCCA+AGG - chr7_3:13345538-13345557 Msa1093420:CDS 30.0%
TTGAAATCGAATGGAATTGA+GGG + chr7_3:13344225-13344244 None:intergenic 30.0%
ATTGAAATCGAATGGAATTG+AGG + chr7_3:13344226-13344245 None:intergenic 30.0%
TTGAATTTCTCTATCTATGG+TGG + chr7_3:13344249-13344268 None:intergenic 30.0%
TTGGACATTAAATCCATTGA+AGG + chr7_3:13344359-13344378 None:intergenic 30.0%
GAAATTACACAACTTGGAAT+TGG + chr7_3:13344443-13344462 None:intergenic 30.0%
GAAGGAAAATTTATTGTTCC+GGG - chr7_3:13344593-13344612 Msa1093420:CDS 30.0%
! TTTTCGCAACTCAATTTGAT+CGG + chr7_3:13344624-13344643 None:intergenic 30.0%
GAGTAACTGCTTATAAAGTA+TGG - chr7_3:13344795-13344814 Msa1093420:CDS 30.0%
AAACAAAAAGGCCATTCATT+TGG - chr7_3:13345026-13345045 Msa1093420:CDS 30.0%
AACAAAAAGGCCATTCATTT+GGG - chr7_3:13345027-13345046 Msa1093420:CDS 30.0%
GAGAAATGGTTATATGAAGA+AGG - chr7_3:13345082-13345101 Msa1093420:CDS 30.0%
TTATATGAAGAAGGGTTTGA+AGG - chr7_3:13345091-13345110 Msa1093420:CDS 30.0%
!!! AAGGTTTTTTGATAAAGGGT+TGG - chr7_3:13345128-13345147 Msa1093420:CDS 30.0%
!!! AGGTTTTTTGATAAAGGGTT+GGG - chr7_3:13345129-13345148 Msa1093420:CDS 30.0%
ATACTATCACACAAAGCAAT+AGG - chr7_3:13345166-13345185 Msa1093420:CDS 30.0%
!!! TTTTTTTGACACATTGTGGA+TGG - chr7_3:13345191-13345210 Msa1093420:CDS 30.0%
GAAGATATAATAGATCTCCA+AGG - chr7_3:13345538-13345557 Msa1093420:CDS 30.0%
TGAAATCGAATGGAATTGAG+GGG + chr7_3:13344224-13344243 None:intergenic 35.0%
!! TATGGTGGATTGAAATCGAA+TGG + chr7_3:13344234-13344253 None:intergenic 35.0%
AAATTTCCAAGTGTAGAGTC+TGG - chr7_3:13344299-13344318 Msa1093420:CDS 35.0%
TGTTGACACTTTACCTTCAA+TGG - chr7_3:13344343-13344362 Msa1093420:CDS 35.0%
GTTCCGAGAATTATATTCGA+CGG - chr7_3:13344509-13344528 Msa1093420:CDS 35.0%
TTCCGAGAATTATATTCGAC+GGG - chr7_3:13344510-13344529 Msa1093420:CDS 35.0%
TTTCGCAACTCAATTTGATC+GGG + chr7_3:13344623-13344642 None:intergenic 35.0%
TTCCAGGGTTATTTAATCCA+GGG - chr7_3:13344651-13344670 Msa1093420:CDS 35.0%
! ATGGTTTTCGCGAAGAAATA+AGG - chr7_3:13344690-13344709 Msa1093420:CDS 35.0%
! TGGTTTTCGCGAAGAAATAA+GGG - chr7_3:13344691-13344710 Msa1093420:CDS 35.0%
GCTTATAAAGTATGGTGTGT+TGG - chr7_3:13344803-13344822 Msa1093420:CDS 35.0%
AACACCTCAACAATTGAAAG+AGG - chr7_3:13344985-13345004 Msa1093420:CDS 35.0%
CTCAACAATTGAAAGAGGTT+GGG - chr7_3:13344990-13345009 Msa1093420:CDS 35.0%
TGGGATTAGAGGAAACAAAA+AGG - chr7_3:13345014-13345033 Msa1093420:CDS 35.0%
TGTGATAGTATCAACACTTG+TGG + chr7_3:13345157-13345176 None:intergenic 35.0%
!!! GGTGTTTTTTTGACACATTG+TGG - chr7_3:13345187-13345206 Msa1093420:CDS 35.0%
TTGTGGATGGAATTCAACAT+TGG - chr7_3:13345204-13345223 Msa1093420:CDS 35.0%
GATGGAATTCAACATTGGAA+GGG - chr7_3:13345209-13345228 Msa1093420:CDS 35.0%
TAAAACTGCTCAGCAAACAT+AGG + chr7_3:13345265-13345284 None:intergenic 35.0%
TGTTAGAGATGCTATTGAGA+AGG - chr7_3:13345396-13345415 Msa1093420:CDS 35.0%
AGATGCTATTGAGAAGGTAA+TGG - chr7_3:13345402-13345421 Msa1093420:CDS 35.0%
GATGCTATTGAGAAGGTAAT+GGG - chr7_3:13345403-13345422 Msa1093420:CDS 35.0%
AGCTAGAAAATATGCTGACA+TGG - chr7_3:13345459-13345478 Msa1093420:CDS 35.0%
CAATTAGTAGAGTCATGTTG+CGG + chr7_3:13345519-13345538 None:intergenic 35.0%
TGAAATCGAATGGAATTGAG+GGG + chr7_3:13344224-13344243 None:intergenic 35.0%
!! TATGGTGGATTGAAATCGAA+TGG + chr7_3:13344234-13344253 None:intergenic 35.0%
AAATTTCCAAGTGTAGAGTC+TGG - chr7_3:13344299-13344318 Msa1093420:CDS 35.0%
TGTTGACACTTTACCTTCAA+TGG - chr7_3:13344343-13344362 Msa1093420:CDS 35.0%
GTTCCGAGAATTATATTCGA+CGG - chr7_3:13344509-13344528 Msa1093420:CDS 35.0%
TTCCGAGAATTATATTCGAC+GGG - chr7_3:13344510-13344529 Msa1093420:CDS 35.0%
TTTCGCAACTCAATTTGATC+GGG + chr7_3:13344623-13344642 None:intergenic 35.0%
TTCCAGGGTTATTTAATCCA+GGG - chr7_3:13344651-13344670 Msa1093420:CDS 35.0%
! ATGGTTTTCGCGAAGAAATA+AGG - chr7_3:13344690-13344709 Msa1093420:CDS 35.0%
! TGGTTTTCGCGAAGAAATAA+GGG - chr7_3:13344691-13344710 Msa1093420:CDS 35.0%
GCTTATAAAGTATGGTGTGT+TGG - chr7_3:13344803-13344822 Msa1093420:CDS 35.0%
AACACCTCAACAATTGAAAG+AGG - chr7_3:13344985-13345004 Msa1093420:CDS 35.0%
CTCAACAATTGAAAGAGGTT+GGG - chr7_3:13344990-13345009 Msa1093420:CDS 35.0%
TGGGATTAGAGGAAACAAAA+AGG - chr7_3:13345014-13345033 Msa1093420:CDS 35.0%
TGTGATAGTATCAACACTTG+TGG + chr7_3:13345157-13345176 None:intergenic 35.0%
!!! GGTGTTTTTTTGACACATTG+TGG - chr7_3:13345187-13345206 Msa1093420:CDS 35.0%
TTGTGGATGGAATTCAACAT+TGG - chr7_3:13345204-13345223 Msa1093420:CDS 35.0%
GATGGAATTCAACATTGGAA+GGG - chr7_3:13345209-13345228 Msa1093420:CDS 35.0%
TAAAACTGCTCAGCAAACAT+AGG + chr7_3:13345265-13345284 None:intergenic 35.0%
TGTTAGAGATGCTATTGAGA+AGG - chr7_3:13345396-13345415 Msa1093420:CDS 35.0%
AGATGCTATTGAGAAGGTAA+TGG - chr7_3:13345402-13345421 Msa1093420:CDS 35.0%
GATGCTATTGAGAAGGTAAT+GGG - chr7_3:13345403-13345422 Msa1093420:CDS 35.0%
AGCTAGAAAATATGCTGACA+TGG - chr7_3:13345459-13345478 Msa1093420:CDS 35.0%
CAATTAGTAGAGTCATGTTG+CGG + chr7_3:13345519-13345538 None:intergenic 35.0%
TCTTCTTCCAATGGTAGACA+TGG - chr7_3:13344151-13344170 Msa1093420:CDS 40.0%
AACTTTGCCATGTCTACCAT+TGG + chr7_3:13344161-13344180 None:intergenic 40.0%
ATTAGCACGTCGCAAAGTTA+AGG - chr7_3:13344181-13344200 Msa1093420:CDS 40.0%
GTCCCGTCGAATATAATTCT+CGG + chr7_3:13344515-13344534 None:intergenic 40.0%
TTGCGAAAATGTCAACTTCC+AGG - chr7_3:13344635-13344654 Msa1093420:CDS 40.0%
TGCGAAAATGTCAACTTCCA+GGG - chr7_3:13344636-13344655 Msa1093420:CDS 40.0%
CTTCCAGGGTTATTTAATCC+AGG - chr7_3:13344650-13344669 Msa1093420:CDS 40.0%
TCCAGGGTTATTTAATCCAG+GGG - chr7_3:13344652-13344671 Msa1093420:CDS 40.0%
TTCTCAAGTGGCTTGAATTG+TGG - chr7_3:13344915-13344934 Msa1093420:CDS 40.0%
!! TCAATTGTTGAGGTGTTGCA+CGG + chr7_3:13344982-13345001 None:intergenic 40.0%
CCAACCTCTTTCAATTGTTG+AGG + chr7_3:13344992-13345011 None:intergenic 40.0%
CCTCAACAATTGAAAGAGGT+TGG - chr7_3:13344989-13345008 Msa1093420:CDS 40.0%
ACAATTGAAAGAGGTTGGGT+TGG - chr7_3:13344994-13345013 Msa1093420:CDS 40.0%
CAATTGAAAGAGGTTGGGTT+GGG - chr7_3:13344995-13345014 Msa1093420:CDS 40.0%
TGCATATGGAAGAGAGGAAA+TGG - chr7_3:13345060-13345079 Msa1093420:CDS 40.0%
GAAGAGAGGAAATGGAGAAA+TGG - chr7_3:13345068-13345087 Msa1093420:CDS 40.0%
ATGAAGAAGGGTTTGAAGGA+AGG - chr7_3:13345095-13345114 Msa1093420:CDS 40.0%
TGAAGAAGGGTTTGAAGGAA+GGG - chr7_3:13345096-13345115 Msa1093420:CDS 40.0%
GAAGGAAGGGTGAAGAATAA+AGG - chr7_3:13345109-13345128 Msa1093420:CDS 40.0%
GGATGGAATTCAACATTGGA+AGG - chr7_3:13345208-13345227 Msa1093420:CDS 40.0%
ACATTGGAAGGGATTTCTTG+TGG - chr7_3:13345220-13345239 Msa1093420:CDS 40.0%
CATTGGAAGGGATTTCTTGT+GGG - chr7_3:13345221-13345240 Msa1093420:CDS 40.0%
ATTGGAAGGGATTTCTTGTG+GGG - chr7_3:13345222-13345241 Msa1093420:CDS 40.0%
TGTGAAGAATGGTGTAAGTG+TGG - chr7_3:13345309-13345328 Msa1093420:CDS 40.0%
GTGAAGAATGGTGTAAGTGT+GGG - chr7_3:13345310-13345329 Msa1093420:CDS 40.0%
!! TATTGAGAAGGTAATGGGTG+AGG - chr7_3:13345408-13345427 Msa1093420:CDS 40.0%
AATGGGTGAGGATGAAGAAA+AGG - chr7_3:13345420-13345439 Msa1093420:CDS 40.0%
GAAAATATGCTGACATGGCA+AGG - chr7_3:13345464-13345483 Msa1093420:CDS 40.0%
GCAAGGAAAGCAATAGAAGA+AGG - chr7_3:13345481-13345500 Msa1093420:CDS 40.0%
AGGAAAGCAATAGAAGAAGG+TGG - chr7_3:13345484-13345503 Msa1093420:CDS 40.0%
TCTTCTTCCAATGGTAGACA+TGG - chr7_3:13344151-13344170 Msa1093420:CDS 40.0%
AACTTTGCCATGTCTACCAT+TGG + chr7_3:13344161-13344180 None:intergenic 40.0%
ATTAGCACGTCGCAAAGTTA+AGG - chr7_3:13344181-13344200 Msa1093420:CDS 40.0%
GTCCCGTCGAATATAATTCT+CGG + chr7_3:13344515-13344534 None:intergenic 40.0%
TTGCGAAAATGTCAACTTCC+AGG - chr7_3:13344635-13344654 Msa1093420:CDS 40.0%
TGCGAAAATGTCAACTTCCA+GGG - chr7_3:13344636-13344655 Msa1093420:CDS 40.0%
CTTCCAGGGTTATTTAATCC+AGG - chr7_3:13344650-13344669 Msa1093420:CDS 40.0%
TCCAGGGTTATTTAATCCAG+GGG - chr7_3:13344652-13344671 Msa1093420:CDS 40.0%
TTCTCAAGTGGCTTGAATTG+TGG - chr7_3:13344915-13344934 Msa1093420:CDS 40.0%
!! TCAATTGTTGAGGTGTTGCA+CGG + chr7_3:13344982-13345001 None:intergenic 40.0%
CCAACCTCTTTCAATTGTTG+AGG + chr7_3:13344992-13345011 None:intergenic 40.0%
CCTCAACAATTGAAAGAGGT+TGG - chr7_3:13344989-13345008 Msa1093420:CDS 40.0%
ACAATTGAAAGAGGTTGGGT+TGG - chr7_3:13344994-13345013 Msa1093420:CDS 40.0%
CAATTGAAAGAGGTTGGGTT+GGG - chr7_3:13344995-13345014 Msa1093420:CDS 40.0%
TGCATATGGAAGAGAGGAAA+TGG - chr7_3:13345060-13345079 Msa1093420:CDS 40.0%
GAAGAGAGGAAATGGAGAAA+TGG - chr7_3:13345068-13345087 Msa1093420:CDS 40.0%
ATGAAGAAGGGTTTGAAGGA+AGG - chr7_3:13345095-13345114 Msa1093420:CDS 40.0%
TGAAGAAGGGTTTGAAGGAA+GGG - chr7_3:13345096-13345115 Msa1093420:CDS 40.0%
GAAGGAAGGGTGAAGAATAA+AGG - chr7_3:13345109-13345128 Msa1093420:CDS 40.0%
GGATGGAATTCAACATTGGA+AGG - chr7_3:13345208-13345227 Msa1093420:CDS 40.0%
ACATTGGAAGGGATTTCTTG+TGG - chr7_3:13345220-13345239 Msa1093420:CDS 40.0%
CATTGGAAGGGATTTCTTGT+GGG - chr7_3:13345221-13345240 Msa1093420:CDS 40.0%
ATTGGAAGGGATTTCTTGTG+GGG - chr7_3:13345222-13345241 Msa1093420:CDS 40.0%
TGTGAAGAATGGTGTAAGTG+TGG - chr7_3:13345309-13345328 Msa1093420:CDS 40.0%
GTGAAGAATGGTGTAAGTGT+GGG - chr7_3:13345310-13345329 Msa1093420:CDS 40.0%
!! TATTGAGAAGGTAATGGGTG+AGG - chr7_3:13345408-13345427 Msa1093420:CDS 40.0%
AATGGGTGAGGATGAAGAAA+AGG - chr7_3:13345420-13345439 Msa1093420:CDS 40.0%
GAAAATATGCTGACATGGCA+AGG - chr7_3:13345464-13345483 Msa1093420:CDS 40.0%
GCAAGGAAAGCAATAGAAGA+AGG - chr7_3:13345481-13345500 Msa1093420:CDS 40.0%
AGGAAAGCAATAGAAGAAGG+TGG - chr7_3:13345484-13345503 Msa1093420:CDS 40.0%
ACCTGGTCATCTTCTTCCAA+TGG - chr7_3:13344142-13344161 Msa1093420:CDS 45.0%
ACCATTGGAAGAAGATGACC+AGG + chr7_3:13344146-13344165 None:intergenic 45.0%
CAACACTTTCACATCCCTCT+GGG + chr7_3:13344328-13344347 None:intergenic 45.0%
TCAACACTTTCACATCCCTC+TGG + chr7_3:13344329-13344348 None:intergenic 45.0%
TCAATTTGATCGGGCATTCC+CGG + chr7_3:13344614-13344633 None:intergenic 45.0%
TCCCCTGGATTAAATAACCC+TGG + chr7_3:13344656-13344675 None:intergenic 45.0%
CCTCTCAACACCCAAATGAA+TGG + chr7_3:13345040-13345059 None:intergenic 45.0%
!! CCATTCATTTGGGTGTTGAG+AGG - chr7_3:13345037-13345056 Msa1093420:CDS 45.0%
GTGGTGCAAGTTGTGAAGAA+TGG - chr7_3:13345298-13345317 Msa1093420:CDS 45.0%
!! GCTCAAAGTGCTGTGCATTT+AGG - chr7_3:13345334-13345353 Msa1093420:CDS 45.0%
! AAGTGCTGTGCATTTAGGAG+AGG - chr7_3:13345339-13345358 Msa1093420:CDS 45.0%
ACCTGGTCATCTTCTTCCAA+TGG - chr7_3:13344142-13344161 Msa1093420:CDS 45.0%
ACCATTGGAAGAAGATGACC+AGG + chr7_3:13344146-13344165 None:intergenic 45.0%
CAACACTTTCACATCCCTCT+GGG + chr7_3:13344328-13344347 None:intergenic 45.0%
TCAACACTTTCACATCCCTC+TGG + chr7_3:13344329-13344348 None:intergenic 45.0%
TCAATTTGATCGGGCATTCC+CGG + chr7_3:13344614-13344633 None:intergenic 45.0%
TCCCCTGGATTAAATAACCC+TGG + chr7_3:13344656-13344675 None:intergenic 45.0%
CCTCTCAACACCCAAATGAA+TGG + chr7_3:13345040-13345059 None:intergenic 45.0%
!! CCATTCATTTGGGTGTTGAG+AGG - chr7_3:13345037-13345056 Msa1093420:CDS 45.0%
GTGGTGCAAGTTGTGAAGAA+TGG - chr7_3:13345298-13345317 Msa1093420:CDS 45.0%
!! GCTCAAAGTGCTGTGCATTT+AGG - chr7_3:13345334-13345353 Msa1093420:CDS 45.0%
! AAGTGCTGTGCATTTAGGAG+AGG - chr7_3:13345339-13345358 Msa1093420:CDS 45.0%
TCGAATGGAATTGAGGGGTG+TGG + chr7_3:13344219-13344238 None:intergenic 50.0%
GGGATTCCAGACTCTACACT+TGG + chr7_3:13344308-13344327 None:intergenic 50.0%
! TGTAGAGTCTGGAATCCCAG+AGG - chr7_3:13344310-13344329 Msa1093420:CDS 50.0%
! GTAGAGTCTGGAATCCCAGA+GGG - chr7_3:13344311-13344330 Msa1093420:CDS 50.0%
!! AGAGGTTGGGTTGGGATTAG+AGG - chr7_3:13345003-13345022 Msa1093420:CDS 50.0%
!! TGGGTGTTGAGAGGTGCATA+TGG - chr7_3:13345046-13345065 Msa1093420:CDS 50.0%
! GAGAGGTGCATATGGAAGAG+AGG - chr7_3:13345054-13345073 Msa1093420:CDS 50.0%
TCGAATGGAATTGAGGGGTG+TGG + chr7_3:13344219-13344238 None:intergenic 50.0%
GGGATTCCAGACTCTACACT+TGG + chr7_3:13344308-13344327 None:intergenic 50.0%
! TGTAGAGTCTGGAATCCCAG+AGG - chr7_3:13344310-13344329 Msa1093420:CDS 50.0%
! GTAGAGTCTGGAATCCCAGA+GGG - chr7_3:13344311-13344330 Msa1093420:CDS 50.0%
!! AGAGGTTGGGTTGGGATTAG+AGG - chr7_3:13345003-13345022 Msa1093420:CDS 50.0%
!! TGGGTGTTGAGAGGTGCATA+TGG - chr7_3:13345046-13345065 Msa1093420:CDS 50.0%
! GAGAGGTGCATATGGAAGAG+AGG - chr7_3:13345054-13345073 Msa1093420:CDS 50.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 13344137 13345570 13344137 ID=Msa1093420;Name=Msa1093420
chr7_3 mRNA 13344137 13345570 13344137 ID=Msa1093420-mRNA-1;Parent=Msa1093420;Name=Msa1093420-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|477
chr7_3 exon 13344137 13345570 13344137 ID=Msa1093420-mRNA-1:exon:3150;Parent=Msa1093420-mRNA-1
chr7_3 CDS 13344137 13345570 13344137 ID=Msa1093420-mRNA-1:cds;Parent=Msa1093420-mRNA-1
Gene Sequence

>Msa1093420

ATGGCACCTGGTCATCTTCTTCCAATGGTAGACATGGCAAAGTTATTAGCACGTCGCAAAGTTAAGGTAACAATACTCACCACACCCCTCAATTCCATTCGATTTCAATCCACCATAGATAGAGAAATTCAATTAGGATCACAAATCCAAATTATTCACATTAAATTTCCAAGTGTAGAGTCTGGAATCCCAGAGGGATGTGAAAGTGTTGACACTTTACCTTCAATGGATTTAATGTCCAATTTTTACATAGCTTTATGCAAGATGCAAAATTCACTAGAAAATGTTTTTGAAAAGCTAAGACCAATTCCAAGTTGTGTAATTTCAGATAAACACATTTCATGTGTAGCTGAAATTGCAATGAAATTCAAAGTTCCGAGAATTATATTCGACGGGACTAATTGTTTTCATCTATTATGCAATCACAATTTACGTAATTTTAATAATATTCCTAATGAAGGAAAATTTATTGTTCCGGGAATGCCCGATCAAATTGAGTTGCGAAAATGTCAACTTCCAGGGTTATTTAATCCAGGGGAAAACAAAAAATTAAATGGTTTTCGCGAAGAAATAAGGGAAATAGAAGAAAAATATTCTTATGGTGTAGTGGTTAATAGTTTTGAAGAATTGGAAGAAAAATATGTTGAAGAGTATAAAAGAGTAACTGCTTATAAAGTATGGTGTGTTGGTCCAGTTTCATTATCAAATAAGGATGAGTTAGATAAATTTGAAAGAGGGAAGAAATTAAATTCAAATGATGAAAGTCAATATGATAAAATTCTCAAGTGGCTTGAATTGTGGCCTTCAAATTCTGTTATTTATGTTTGTCTTGGTAGTTTAAACCGTGCAACACCTCAACAATTGAAAGAGGTTGGGTTGGGATTAGAGGAAACAAAAAGGCCATTCATTTGGGTGTTGAGAGGTGCATATGGAAGAGAGGAAATGGAGAAATGGTTATATGAAGAAGGGTTTGAAGGAAGGGTGAAGAATAAAGGTTTTTTGATAAAGGGTTGGGCACCACAAGTGTTGATACTATCACACAAAGCAATAGGTGTTTTTTTGACACATTGTGGATGGAATTCAACATTGGAAGGGATTTCTTGTGGGGTGCCTTTAGTAACATTTCCTATGTTTGCTGAGCAGTTTTATAATGAGAAAGTTGTGGTGCAAGTTGTGAAGAATGGTGTAAGTGTGGGAGCTCAAAGTGCTGTGCATTTAGGAGAGGAAGAGAAGTGTTGTGTTGTTGTTAAGAGAGAAGATGTTAGAGATGCTATTGAGAAGGTAATGGGTGAGGATGAAGAAAAGGAAAAGATTAGGGAAAGAGCTAGAAAATATGCTGACATGGCAAGGAAAGCAATAGAAGAAGGTGGTTCTTCTTACCGCAACATGACTCTACTAATTGAAGATATAATAGATCTCCAAGGACAAAGCTAA

Protein sequence

>Msa1093420

MAPGHLLPMVDMAKLLARRKVKVTILTTPLNSIRFQSTIDREIQLGSQIQIIHIKFPSVESGIPEGCESVDTLPSMDLMSNFYIALCKMQNSLENVFEKLRPIPSCVISDKHISCVAEIAMKFKVPRIIFDGTNCFHLLCNHNLRNFNNIPNEGKFIVPGMPDQIELRKCQLPGLFNPGENKKLNGFREEIREIEEKYSYGVVVNSFEELEEKYVEEYKRVTAYKVWCVGPVSLSNKDELDKFERGKKLNSNDESQYDKILKWLELWPSNSVIYVCLGSLNRATPQQLKEVGLGLEETKRPFIWVLRGAYGREEMEKWLYEEGFEGRVKNKGFLIKGWAPQVLILSHKAIGVFLTHCGWNSTLEGISCGVPLVTFPMFAEQFYNEKVVVQVVKNGVSVGAQSAVHLGEEEKCCVVVKREDVRDAIEKVMGEDEEKEKIRERARKYADMARKAIEEGGSSYRNMTLLIEDIIDLQGQS*