Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369060 | XP_003630257.1 | 94.681 | 282 | 15 | 0 | 1 | 282 | 354 | 635 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369060 | G7LE11 | 94.681 | 282 | 15 | 0 | 1 | 282 | 354 | 635 | 0.0 | 555 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006080 | Msa1369060 | 0.803291 | 3.738999e-49 | -8.615850e-47 |
| Msa0010150 | Msa1369060 | 0.824583 | 7.460014e-54 | -8.615850e-47 |
| Msa0024500 | Msa1369060 | -0.801114 | 1.048700e-48 | -8.615850e-47 |
| Msa0072440 | Msa1369060 | 0.810751 | 9.863915e-51 | -8.615850e-47 |
| Msa1356100 | Msa1369060 | -0.801712 | 7.910688e-49 | -8.615850e-47 |
| Msa1369060 | Msa1377980 | -0.813433 | 2.566384e-51 | -8.615850e-47 |
| Msa1369060 | Msa1403660 | 0.802392 | 5.734806e-49 | -8.615850e-47 |
| Msa1369060 | Msa1408280 | -0.813690 | 2.252921e-51 | -8.615850e-47 |
| Msa1369060 | Msa1408860 | -0.800155 | 1.645568e-48 | -8.615850e-47 |
| Msa1369060 | Msa1429810 | 0.800973 | 1.121072e-48 | -8.615850e-47 |
| Msa1369060 | Msa1459130 | -0.810633 | 1.046260e-50 | -8.615850e-47 |
| Msa0614290 | Msa1369060 | 0.802498 | 5.452214e-49 | -8.615850e-47 |
| Msa0616890 | Msa1369060 | -0.800709 | 1.269325e-48 | -8.615850e-47 |
| Msa0631700 | Msa1369060 | 0.801364 | 9.323687e-49 | -8.615850e-47 |
| Msa0638810 | Msa1369060 | 0.810902 | 9.148535e-51 | -8.615850e-47 |
| Msa0638820 | Msa1369060 | 0.819609 | 1.061477e-52 | -8.615850e-47 |
| Msa0671640 | Msa1369060 | 0.812614 | 3.879432e-51 | -8.615850e-47 |
| Msa0672950 | Msa1369060 | 0.805212 | 1.488720e-49 | -8.615850e-47 |
| Msa0672980 | Msa1369060 | 0.802537 | 5.353271e-49 | -8.615850e-47 |
| Msa0683200 | Msa1369060 | -0.801392 | 9.203524e-49 | -8.615850e-47 |
| Msa0697510 | Msa1369060 | 0.811706 | 6.121182e-51 | -8.615850e-47 |
| Msa0697520 | Msa1369060 | 0.816383 | 5.689911e-52 | -8.615850e-47 |
| Msa0701800 | Msa1369060 | -0.812052 | 5.148149e-51 | -8.615850e-47 |
| Msa0702020 | Msa1369060 | -0.802167 | 6.378983e-49 | -8.615850e-47 |
| Msa0705520 | Msa1369060 | 0.906608 | 1.236783e-80 | -8.615850e-47 |
| Msa0707860 | Msa1369060 | -0.807000 | 6.259867e-50 | -8.615850e-47 |
| Msa0721930 | Msa1369060 | 0.801060 | 1.076147e-48 | -8.615850e-47 |
| Msa0758880 | Msa1369060 | -0.801345 | 9.409527e-49 | -8.615850e-47 |
| Msa0805390 | Msa1369060 | 0.804841 | 1.779998e-49 | -8.615850e-47 |
| Msa0807100 | Msa1369060 | -0.800793 | 1.219905e-48 | -8.615850e-47 |
| Msa0120860 | Msa1369060 | 0.835255 | 1.866115e-56 | -8.615850e-47 |
| Msa0186400 | Msa1369060 | -0.808277 | 3.351533e-50 | -8.615850e-47 |
| Msa0189150 | Msa1369060 | -0.805868 | 1.084215e-49 | -8.615850e-47 |
| Msa0197170 | Msa1369060 | 0.800665 | 1.295473e-48 | -8.615850e-47 |
| Msa0216150 | Msa1369060 | -0.810095 | 1.367049e-50 | -8.615850e-47 |
| Msa0225070 | Msa1369060 | -0.803019 | 4.257199e-49 | -8.615850e-47 |
| Msa0238140 | Msa1369060 | 0.827623 | 1.412317e-54 | -8.615850e-47 |
| Msa1228600 | Msa1369060 | -0.804856 | 1.767024e-49 | -8.615850e-47 |
| Msa1317740 | Msa1369060 | 0.812178 | 4.830782e-51 | -8.615850e-47 |
| Msa1340440 | Msa1369060 | 0.813969 | 1.955585e-51 | -8.615850e-47 |
| Msa1342360 | Msa1369060 | -0.814721 | 1.333393e-51 | -8.615850e-47 |
| Msa0369990 | Msa1369060 | 0.808709 | 2.711316e-50 | -8.615850e-47 |
| Msa0390590 | Msa1369060 | -0.802679 | 5.002393e-49 | -8.615850e-47 |
| Msa0403740 | Msa1369060 | -0.815306 | 9.888927e-52 | -8.615850e-47 |
| Msa0417400 | Msa1369060 | 0.804611 | 1.987711e-49 | -8.615850e-47 |
| Msa0456450 | Msa1369060 | -0.815437 | 9.248610e-52 | -8.615850e-47 |
| Msa0457070 | Msa1369060 | -0.810526 | 1.103332e-50 | -8.615850e-47 |
| Msa1002670 | Msa1369060 | 0.812893 | 3.371270e-51 | -8.615850e-47 |
| Msa1026490 | Msa1369060 | 0.807697 | 4.453139e-50 | -8.615850e-47 |
| Msa1030320 | Msa1369060 | 0.802357 | 5.828712e-49 | -8.615850e-47 |
| Msa1069350 | Msa1369060 | 0.804310 | 2.297261e-49 | -8.615850e-47 |
| Msa1074560 | Msa1369060 | 0.801962 | 7.030993e-49 | -8.615850e-47 |
| Msa1079780 | Msa1369060 | 0.823841 | 1.114912e-53 | -8.615850e-47 |
| Msa1088400 | Msa1369060 | -0.808070 | 3.710082e-50 | -8.615850e-47 |
| Msa1090150 | Msa1369060 | 0.823020 | 1.733882e-53 | -8.615850e-47 |
| Msa1093420 | Msa1369060 | 0.822717 | 2.040542e-53 | -8.615850e-47 |
| Msa0238950 | Msa1369060 | 0.811936 | 5.454427e-51 | -8.615850e-47 |
| Msa0246140 | Msa1369060 | 0.802756 | 4.823872e-49 | -8.615850e-47 |
| Msa0266140 | Msa1369060 | -0.810030 | 1.411236e-50 | -8.615850e-47 |
| Msa0270730 | Msa1369060 | -0.812648 | 3.814318e-51 | -8.615850e-47 |
| Msa0271660 | Msa1369060 | 0.831527 | 1.587332e-55 | -8.615850e-47 |
| Msa0276780 | Msa1369060 | 0.811160 | 8.044496e-51 | -8.615850e-47 |
| Msa0284730 | Msa1369060 | 0.812894 | 3.368681e-51 | -8.615850e-47 |
| Msa0304060 | Msa1369060 | -0.810824 | 9.509803e-51 | -8.615850e-47 |
| Msa0308750 | Msa1369060 | 0.820045 | 8.440019e-53 | -8.615850e-47 |
| Msa0316740 | Msa1369060 | 0.818082 | 2.359875e-52 | -8.615850e-47 |
| Msa0364030 | Msa1369060 | -0.813985 | 1.939226e-51 | -8.615850e-47 |
| Msa1121720 | Msa1369060 | -0.801474 | 8.851612e-49 | -8.615850e-47 |
| Msa1157210 | Msa1369060 | 0.809442 | 1.888202e-50 | -8.615850e-47 |
| Msa1167830 | Msa1369060 | 0.831691 | 1.446261e-55 | -8.615850e-47 |
| Msa1177650 | Msa1369060 | 0.814813 | 1.272693e-51 | -8.615850e-47 |
| Msa1205270 | Msa1369060 | -0.801232 | 9.921470e-49 | -8.615850e-47 |
| Msa0491160 | Msa1369060 | -0.805299 | 1.427461e-49 | -8.615850e-47 |
| Msa0523420 | Msa1369060 | -0.800693 | 1.278823e-48 | -8.615850e-47 |
| Msa0535570 | Msa1369060 | 0.806145 | 9.484367e-50 | -8.615850e-47 |
| Msa0538050 | Msa1369060 | -0.802320 | 5.931711e-49 | -8.615850e-47 |
| Msa0560280 | Msa1369060 | 0.822813 | 1.937540e-53 | -8.615850e-47 |
| Msa0569100 | Msa1369060 | 0.838134 | 3.443507e-57 | -8.615850e-47 |
| Msa0569130 | Msa1369060 | 0.861103 | 1.297431e-63 | -8.615850e-47 |
| Msa0572730 | Msa1369060 | -0.809042 | 2.300744e-50 | -8.615850e-47 |
| Msa0580210 | Msa1369060 | 0.891660 | 3.241732e-74 | -8.615850e-47 |
| Msa0585720 | Msa1369060 | -0.800806 | 1.212280e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369060 | MtrunA17_Chr8g0384171 | 94.681 | 282 | 15 | 0 | 1 | 282 | 354 | 635 | 0.0 | 555 |
| Msa1369060 | MtrunA17_Chr8g0384181 | 59.197 | 299 | 98 | 3 | 1 | 282 | 371 | 662 | 8.47e-122 | 362 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAGCAGCTTTGGCATTT+TGG | 0.161804 | tig0018755:+1838 | Msa1369060:CDS |
| GCTCTCACTGTTTGTATTAT+TGG | 0.196779 | tig0018755:-1822 | None:intergenic |
| CATGCTTGGAGAAGGGAATT+TGG | 0.204693 | tig0018755:-2819 | None:intergenic |
| CTTCTAGTTAAACTATAAAA+TGG | 0.259561 | tig0018755:-2871 | None:intergenic |
| TTCCCTAAAATCTCAATGTT+TGG | 0.262646 | tig0018755:-1945 | None:intergenic |
| CTTGCGTTCACTTCTATTGA+TGG | 0.265783 | tig0018755:-2015 | None:intergenic |
| AAAAGAGGTAAGATACTTAA+TGG | 0.295527 | tig0018755:+2047 | Msa1369060:CDS |
| TCCCTAAAATCTCAATGTTT+GGG | 0.322790 | tig0018755:-1944 | None:intergenic |
| TGACAATATAGCTTGTCTTT+TGG | 0.342303 | tig0018755:-1976 | None:intergenic |
| ATAGAGTTTGTATCTATATA+TGG | 0.353882 | tig0018755:+2563 | Msa1369060:CDS |
| ATGCTTGGAGAAGGGAATTT+GGG | 0.382762 | tig0018755:-2818 | None:intergenic |
| CGAGGTGGGTGTGCTTGTGC+TGG | 0.389726 | tig0018755:+2116 | Msa1369060:CDS |
| ACATTGTTAAACGATCTCTT+TGG | 0.390512 | tig0018755:+2083 | Msa1369060:CDS |
| CCAGGATACATTGTACTTAG+AGG | 0.405453 | tig0018755:+1767 | None:intergenic |
| GGGTTATGTTGGTGTAAAAC+CGG | 0.407675 | tig0018755:+2475 | Msa1369060:intron |
| ACAAACAGTGAGAGCAGCTT+TGG | 0.409550 | tig0018755:+1830 | Msa1369060:CDS |
| AAAATCTCAATGTTTGGGTT+GGG | 0.422552 | tig0018755:-1939 | None:intergenic |
| CTCACTGTTTGTATTATTGG+AGG | 0.439527 | tig0018755:-1819 | None:intergenic |
| TAAAATCTCAATGTTTGGGT+TGG | 0.441881 | tig0018755:-1940 | None:intergenic |
| ATATATAGATACAAACTCTA+TGG | 0.442580 | tig0018755:-2561 | None:intergenic |
| CCCTCCTCATCCATGTAGTA+AGG | 0.449991 | tig0018755:-2518 | None:intergenic |
| CTTAGAGGACATAGAGGAAA+GGG | 0.479020 | tig0018755:+1782 | Msa1369060:CDS |
| TGTGCTTGTGCTGGACCTTA+CGG | 0.484279 | tig0018755:+2125 | Msa1369060:CDS |
| CGCAAGACTAAGAACAAAAG+AGG | 0.484458 | tig0018755:+2032 | Msa1369060:CDS |
| AATGTAAGAATTAAATCAGT+TGG | 0.490879 | tig0018755:+2743 | Msa1369060:CDS |
| ACATCTGGACAGACCATGCT+TGG | 0.501898 | tig0018755:-2833 | None:intergenic |
| AGAACACTGGGATCTACATC+TGG | 0.503224 | tig0018755:-2848 | None:intergenic |
| TCCTTACTACATGGATGAGG+AGG | 0.512524 | tig0018755:+2517 | Msa1369060:CDS |
| GGACAGACCATGCTTGGAGA+AGG | 0.520334 | tig0018755:-2827 | None:intergenic |
| AAAGCTTGAAACTCTGATGA+AGG | 0.520437 | tig0018755:+2649 | Msa1369060:CDS |
| GACATAGAGGAAAGGGAAAA+CGG | 0.520769 | tig0018755:+1789 | Msa1369060:CDS |
| CAAATTCCCTTCTCCAAGCA+TGG | 0.525202 | tig0018755:+2820 | Msa1369060:CDS |
| AATCAGTTGGTAAGATGAGA+AGG | 0.526323 | tig0018755:+2756 | Msa1369060:CDS |
| AACTATAAAATGGAGAACAC+TGG | 0.538606 | tig0018755:-2861 | None:intergenic |
| GTTTAACAATGTTGCAACAA+AGG | 0.556553 | tig0018755:-2072 | None:intergenic |
| AATTGAAGTTGTATAGCGGA+AGG | 0.567777 | tig0018755:-2595 | None:intergenic |
| CCTTACTACATGGATGAGGA+GGG | 0.568463 | tig0018755:+2518 | Msa1369060:CDS |
| CTCTTGAATAGCTGATCTAA+CGG | 0.570691 | tig0018755:-2186 | None:intergenic |
| GACAGACCATGCTTGGAGAA+GGG | 0.571080 | tig0018755:-2826 | None:intergenic |
| ACTATAAAATGGAGAACACT+GGG | 0.591554 | tig0018755:-2860 | None:intergenic |
| CGTTAGATCAGCTATTCAAG+AGG | 0.592457 | tig0018755:+2187 | Msa1369060:CDS |
| TTGTATCTATATATGGTCAA+CGG | 0.594729 | tig0018755:+2570 | Msa1369060:CDS |
| TTCAAATTGAAGTTGTATAG+CGG | 0.601025 | tig0018755:-2599 | None:intergenic |
| TTGGAATACAAGCTCGAGGT+GGG | 0.609272 | tig0018755:+2102 | Msa1369060:CDS |
| TTGAGCAAATCATGTCCGTA+AGG | 0.609814 | tig0018755:-2140 | None:intergenic |
| AAACTAACTCTAGTCCATCC+CGG | 0.622757 | tig0018755:-2494 | None:intergenic |
| ACTTAGAGGACATAGAGGAA+AGG | 0.629801 | tig0018755:+1781 | Msa1369060:CDS |
| GGTTATGTTGGTGTAAAACC+GGG | 0.635004 | tig0018755:+2476 | Msa1369060:CDS |
| CTCTTTGGAATACAAGCTCG+AGG | 0.637842 | tig0018755:+2098 | Msa1369060:CDS |
| TTTGGAATACAAGCTCGAGG+TGG | 0.658681 | tig0018755:+2101 | Msa1369060:CDS |
| ATGTTGGTGTAAAACCGGGA+TGG | 0.664075 | tig0018755:+2480 | Msa1369060:CDS |
| ATTGTACTTAGAGGACATAG+AGG | 0.684016 | tig0018755:+1776 | Msa1369060:CDS |
| ATAGAGGAAAGGGAAAACGG+TGG | 0.801953 | tig0018755:+1792 | Msa1369060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATTGTTTTTAAACA+GGG | + | tig0018755:2455-2474 | Msa1369060:intron | 10.0% |
| !!! | TTATTTATTGTTTTTAAACA+GGG | + | tig0018755:2455-2474 | Msa1369060:intron | 10.0% |
| !! | CATATTTGGAAAATTAATAT+TGG | + | tig0018755:2276-2295 | Msa1369060:intron | 15.0% |
| !! | TATGTTTAACATGTTAAAAA+AGG | - | tig0018755:2429-2448 | None:intergenic | 15.0% |
| !!! | CTTATTTATTGTTTTTAAAC+AGG | + | tig0018755:2454-2473 | Msa1369060:intron | 15.0% |
| !! | CATATTTGGAAAATTAATAT+TGG | + | tig0018755:2276-2295 | Msa1369060:intron | 15.0% |
| !! | TATGTTTAACATGTTAAAAA+AGG | - | tig0018755:2429-2448 | None:intergenic | 15.0% |
| !!! | CTTATTTATTGTTTTTAAAC+AGG | + | tig0018755:2454-2473 | Msa1369060:intron | 15.0% |
| !! | ATATATAGATACAAACTCTA+TGG | - | tig0018755:2564-2583 | None:intergenic | 20.0% |
| !! | ATAGAGTTTGTATCTATATA+TGG | + | tig0018755:2563-2582 | Msa1369060:CDS | 20.0% |
| !! | TACAACTTCAATTTGAAAAA+TGG | + | tig0018755:2605-2624 | Msa1369060:CDS | 20.0% |
| !! | AATGTAAGAATTAAATCAGT+TGG | + | tig0018755:2743-2762 | Msa1369060:CDS | 20.0% |
| !! | ATATATAGATACAAACTCTA+TGG | - | tig0018755:2564-2583 | None:intergenic | 20.0% |
| !! | ATAGAGTTTGTATCTATATA+TGG | + | tig0018755:2563-2582 | Msa1369060:CDS | 20.0% |
| !! | TACAACTTCAATTTGAAAAA+TGG | + | tig0018755:2605-2624 | Msa1369060:CDS | 20.0% |
| !! | AATGTAAGAATTAAATCAGT+TGG | + | tig0018755:2743-2762 | Msa1369060:CDS | 20.0% |
| ! | AAAAGAGGTAAGATACTTAA+TGG | + | tig0018755:2047-2066 | Msa1369060:CDS | 25.0% |
| ! | TTATTACGAACACACATATT+TGG | + | tig0018755:2262-2281 | Msa1369060:intron | 25.0% |
| ! | TTGTATCTATATATGGTCAA+CGG | + | tig0018755:2570-2589 | Msa1369060:CDS | 25.0% |
| ! | TTCAAATTGAAGTTGTATAG+CGG | - | tig0018755:2602-2621 | None:intergenic | 25.0% |
| !!! | AATGATTTTTTCAAAGCAGA+TGG | + | tig0018755:2713-2732 | Msa1369060:CDS | 25.0% |
| ! | AAAAGAGGTAAGATACTTAA+TGG | + | tig0018755:2047-2066 | Msa1369060:CDS | 25.0% |
| ! | TTATTACGAACACACATATT+TGG | + | tig0018755:2262-2281 | Msa1369060:intron | 25.0% |
| ! | TTGTATCTATATATGGTCAA+CGG | + | tig0018755:2570-2589 | Msa1369060:CDS | 25.0% |
| ! | TTCAAATTGAAGTTGTATAG+CGG | - | tig0018755:2602-2621 | None:intergenic | 25.0% |
| !!! | AATGATTTTTTCAAAGCAGA+TGG | + | tig0018755:2713-2732 | Msa1369060:CDS | 25.0% |
| ! | AAAATCTCAATGTTTGGGTT+GGG | - | tig0018755:1942-1961 | None:intergenic | 30.0% |
| TAAAATCTCAATGTTTGGGT+TGG | - | tig0018755:1943-1962 | None:intergenic | 30.0% | |
| ! | AACCCAAACATTGAGATTTT+AGG | + | tig0018755:1942-1961 | Msa1369060:CDS | 30.0% |
| ! | ACCCAAACATTGAGATTTTA+GGG | + | tig0018755:1943-1962 | Msa1369060:CDS | 30.0% |
| TCCCTAAAATCTCAATGTTT+GGG | - | tig0018755:1947-1966 | None:intergenic | 30.0% | |
| TTCCCTAAAATCTCAATGTT+TGG | - | tig0018755:1948-1967 | None:intergenic | 30.0% | |
| !! | TGACAATATAGCTTGTCTTT+TGG | - | tig0018755:1979-1998 | None:intergenic | 30.0% |
| GTTTAACAATGTTGCAACAA+AGG | - | tig0018755:2075-2094 | None:intergenic | 30.0% | |
| ACATTGTTAAACGATCTCTT+TGG | + | tig0018755:2083-2102 | Msa1369060:CDS | 30.0% | |
| TTGAAGTAAAAAGAGAAACG+TGG | + | tig0018755:2314-2333 | Msa1369060:intron | 30.0% | |
| ! | GTTTTTAAACAGGGTTATGT+TGG | + | tig0018755:2464-2483 | Msa1369060:intron | 30.0% |
| !!! | AGTTAGTTTTCCTTACTACA+TGG | + | tig0018755:2508-2527 | Msa1369060:CDS | 30.0% |
| TCAATTTGAAAAATGGCAAC+TGG | + | tig0018755:2612-2631 | Msa1369060:CDS | 30.0% | |
| ACTATAAAATGGAGAACACT+GGG | - | tig0018755:2863-2882 | None:intergenic | 30.0% | |
| AACTATAAAATGGAGAACAC+TGG | - | tig0018755:2864-2883 | None:intergenic | 30.0% | |
| ! | AAAATCTCAATGTTTGGGTT+GGG | - | tig0018755:1942-1961 | None:intergenic | 30.0% |
| TAAAATCTCAATGTTTGGGT+TGG | - | tig0018755:1943-1962 | None:intergenic | 30.0% | |
| ! | AACCCAAACATTGAGATTTT+AGG | + | tig0018755:1942-1961 | Msa1369060:CDS | 30.0% |
| ! | ACCCAAACATTGAGATTTTA+GGG | + | tig0018755:1943-1962 | Msa1369060:CDS | 30.0% |
| TCCCTAAAATCTCAATGTTT+GGG | - | tig0018755:1947-1966 | None:intergenic | 30.0% | |
| TTCCCTAAAATCTCAATGTT+TGG | - | tig0018755:1948-1967 | None:intergenic | 30.0% | |
| !! | TGACAATATAGCTTGTCTTT+TGG | - | tig0018755:1979-1998 | None:intergenic | 30.0% |
| GTTTAACAATGTTGCAACAA+AGG | - | tig0018755:2075-2094 | None:intergenic | 30.0% | |
| ACATTGTTAAACGATCTCTT+TGG | + | tig0018755:2083-2102 | Msa1369060:CDS | 30.0% | |
| TTGAAGTAAAAAGAGAAACG+TGG | + | tig0018755:2314-2333 | Msa1369060:intron | 30.0% | |
| ! | GTTTTTAAACAGGGTTATGT+TGG | + | tig0018755:2464-2483 | Msa1369060:intron | 30.0% |
| !!! | AGTTAGTTTTCCTTACTACA+TGG | + | tig0018755:2508-2527 | Msa1369060:CDS | 30.0% |
| TCAATTTGAAAAATGGCAAC+TGG | + | tig0018755:2612-2631 | Msa1369060:CDS | 30.0% | |
| ACTATAAAATGGAGAACACT+GGG | - | tig0018755:2863-2882 | None:intergenic | 30.0% | |
| AACTATAAAATGGAGAACAC+TGG | - | tig0018755:2864-2883 | None:intergenic | 30.0% | |
| ATTGTACTTAGAGGACATAG+AGG | + | tig0018755:1776-1795 | Msa1369060:CDS | 35.0% | |
| CTCACTGTTTGTATTATTGG+AGG | - | tig0018755:1822-1841 | None:intergenic | 35.0% | |
| GCTCTCACTGTTTGTATTAT+TGG | - | tig0018755:1825-1844 | None:intergenic | 35.0% | |
| CTCTTGAATAGCTGATCTAA+CGG | - | tig0018755:2189-2208 | None:intergenic | 35.0% | |
| ! | TTTTCCTTACTACATGGATG+AGG | + | tig0018755:2514-2533 | Msa1369060:CDS | 35.0% |
| ! | AATTGAAGTTGTATAGCGGA+AGG | - | tig0018755:2598-2617 | None:intergenic | 35.0% |
| AAAGCTTGAAACTCTGATGA+AGG | + | tig0018755:2649-2668 | Msa1369060:CDS | 35.0% | |
| !! | AATCAGTTGGTAAGATGAGA+AGG | + | tig0018755:2756-2775 | Msa1369060:CDS | 35.0% |
| ATTGTACTTAGAGGACATAG+AGG | + | tig0018755:1776-1795 | Msa1369060:CDS | 35.0% | |
| CTCACTGTTTGTATTATTGG+AGG | - | tig0018755:1822-1841 | None:intergenic | 35.0% | |
| GCTCTCACTGTTTGTATTAT+TGG | - | tig0018755:1825-1844 | None:intergenic | 35.0% | |
| CTCTTGAATAGCTGATCTAA+CGG | - | tig0018755:2189-2208 | None:intergenic | 35.0% | |
| ! | TTTTCCTTACTACATGGATG+AGG | + | tig0018755:2514-2533 | Msa1369060:CDS | 35.0% |
| ! | AATTGAAGTTGTATAGCGGA+AGG | - | tig0018755:2598-2617 | None:intergenic | 35.0% |
| AAAGCTTGAAACTCTGATGA+AGG | + | tig0018755:2649-2668 | Msa1369060:CDS | 35.0% | |
| !! | AATCAGTTGGTAAGATGAGA+AGG | + | tig0018755:2756-2775 | Msa1369060:CDS | 35.0% |
| ACTTAGAGGACATAGAGGAA+AGG | + | tig0018755:1781-1800 | Msa1369060:CDS | 40.0% | |
| CTTAGAGGACATAGAGGAAA+GGG | + | tig0018755:1782-1801 | Msa1369060:CDS | 40.0% | |
| GACATAGAGGAAAGGGAAAA+CGG | + | tig0018755:1789-1808 | Msa1369060:CDS | 40.0% | |
| CTTGCGTTCACTTCTATTGA+TGG | - | tig0018755:2018-2037 | None:intergenic | 40.0% | |
| CGCAAGACTAAGAACAAAAG+AGG | + | tig0018755:2032-2051 | Msa1369060:CDS | 40.0% | |
| TTGAGCAAATCATGTCCGTA+AGG | - | tig0018755:2143-2162 | None:intergenic | 40.0% | |
| CGTTAGATCAGCTATTCAAG+AGG | + | tig0018755:2187-2206 | Msa1369060:CDS | 40.0% | |
| !! | AAACGTGGATTAGAGAATCG+TGG | + | tig0018755:2329-2348 | Msa1369060:intron | 40.0% |
| GGGTTATGTTGGTGTAAAAC+CGG | + | tig0018755:2475-2494 | Msa1369060:intron | 40.0% | |
| GGTTATGTTGGTGTAAAACC+GGG | + | tig0018755:2476-2495 | Msa1369060:CDS | 40.0% | |
| AAACTAACTCTAGTCCATCC+CGG | - | tig0018755:2497-2516 | None:intergenic | 40.0% | |
| ATGCTTGGAGAAGGGAATTT+GGG | - | tig0018755:2821-2840 | None:intergenic | 40.0% | |
| ACTTAGAGGACATAGAGGAA+AGG | + | tig0018755:1781-1800 | Msa1369060:CDS | 40.0% | |
| CTTAGAGGACATAGAGGAAA+GGG | + | tig0018755:1782-1801 | Msa1369060:CDS | 40.0% | |
| GACATAGAGGAAAGGGAAAA+CGG | + | tig0018755:1789-1808 | Msa1369060:CDS | 40.0% | |
| CTTGCGTTCACTTCTATTGA+TGG | - | tig0018755:2018-2037 | None:intergenic | 40.0% | |
| CGCAAGACTAAGAACAAAAG+AGG | + | tig0018755:2032-2051 | Msa1369060:CDS | 40.0% | |
| TTGAGCAAATCATGTCCGTA+AGG | - | tig0018755:2143-2162 | None:intergenic | 40.0% | |
| CGTTAGATCAGCTATTCAAG+AGG | + | tig0018755:2187-2206 | Msa1369060:CDS | 40.0% | |
| !! | AAACGTGGATTAGAGAATCG+TGG | + | tig0018755:2329-2348 | Msa1369060:intron | 40.0% |
| GGGTTATGTTGGTGTAAAAC+CGG | + | tig0018755:2475-2494 | Msa1369060:intron | 40.0% | |
| GGTTATGTTGGTGTAAAACC+GGG | + | tig0018755:2476-2495 | Msa1369060:CDS | 40.0% | |
| AAACTAACTCTAGTCCATCC+CGG | - | tig0018755:2497-2516 | None:intergenic | 40.0% | |
| ATGCTTGGAGAAGGGAATTT+GGG | - | tig0018755:2821-2840 | None:intergenic | 40.0% | |
| ATAGAGGAAAGGGAAAACGG+TGG | + | tig0018755:1792-1811 | Msa1369060:CDS | 45.0% | |
| ACAAACAGTGAGAGCAGCTT+TGG | + | tig0018755:1830-1849 | Msa1369060:CDS | 45.0% | |
| !! | TGAGAGCAGCTTTGGCATTT+TGG | + | tig0018755:1838-1857 | Msa1369060:CDS | 45.0% |
| !! | GAGAGCAGCTTTGGCATTTT+GGG | + | tig0018755:1839-1858 | Msa1369060:CDS | 45.0% |
| !! | CTCTTTGGAATACAAGCTCG+AGG | + | tig0018755:2098-2117 | Msa1369060:CDS | 45.0% |
| ! | TTTGGAATACAAGCTCGAGG+TGG | + | tig0018755:2101-2120 | Msa1369060:CDS | 45.0% |
| TTGGAATACAAGCTCGAGGT+GGG | + | tig0018755:2102-2121 | Msa1369060:CDS | 45.0% | |
| ATGTTGGTGTAAAACCGGGA+TGG | + | tig0018755:2480-2499 | Msa1369060:CDS | 45.0% | |
| TCCTTACTACATGGATGAGG+AGG | + | tig0018755:2517-2536 | Msa1369060:CDS | 45.0% | |
| CCTTACTACATGGATGAGGA+GGG | + | tig0018755:2518-2537 | Msa1369060:CDS | 45.0% | |
| CATGCTTGGAGAAGGGAATT+TGG | - | tig0018755:2822-2841 | None:intergenic | 45.0% | |
| CAAATTCCCTTCTCCAAGCA+TGG | + | tig0018755:2820-2839 | Msa1369060:CDS | 45.0% | |
| AGAACACTGGGATCTACATC+TGG | - | tig0018755:2851-2870 | None:intergenic | 45.0% | |
| ATAGAGGAAAGGGAAAACGG+TGG | + | tig0018755:1792-1811 | Msa1369060:CDS | 45.0% | |
| ACAAACAGTGAGAGCAGCTT+TGG | + | tig0018755:1830-1849 | Msa1369060:CDS | 45.0% | |
| !! | TGAGAGCAGCTTTGGCATTT+TGG | + | tig0018755:1838-1857 | Msa1369060:CDS | 45.0% |
| !! | GAGAGCAGCTTTGGCATTTT+GGG | + | tig0018755:1839-1858 | Msa1369060:CDS | 45.0% |
| !! | CTCTTTGGAATACAAGCTCG+AGG | + | tig0018755:2098-2117 | Msa1369060:CDS | 45.0% |
| ! | TTTGGAATACAAGCTCGAGG+TGG | + | tig0018755:2101-2120 | Msa1369060:CDS | 45.0% |
| TTGGAATACAAGCTCGAGGT+GGG | + | tig0018755:2102-2121 | Msa1369060:CDS | 45.0% | |
| ATGTTGGTGTAAAACCGGGA+TGG | + | tig0018755:2480-2499 | Msa1369060:CDS | 45.0% | |
| TCCTTACTACATGGATGAGG+AGG | + | tig0018755:2517-2536 | Msa1369060:CDS | 45.0% | |
| CCTTACTACATGGATGAGGA+GGG | + | tig0018755:2518-2537 | Msa1369060:CDS | 45.0% | |
| CATGCTTGGAGAAGGGAATT+TGG | - | tig0018755:2822-2841 | None:intergenic | 45.0% | |
| CAAATTCCCTTCTCCAAGCA+TGG | + | tig0018755:2820-2839 | Msa1369060:CDS | 45.0% | |
| AGAACACTGGGATCTACATC+TGG | - | tig0018755:2851-2870 | None:intergenic | 45.0% | |
| TGTGCTTGTGCTGGACCTTA+CGG | + | tig0018755:2125-2144 | Msa1369060:CDS | 50.0% | |
| CCCTCCTCATCCATGTAGTA+AGG | - | tig0018755:2521-2540 | None:intergenic | 50.0% | |
| GACAGACCATGCTTGGAGAA+GGG | - | tig0018755:2829-2848 | None:intergenic | 50.0% | |
| ACATCTGGACAGACCATGCT+TGG | - | tig0018755:2836-2855 | None:intergenic | 50.0% | |
| TGTGCTTGTGCTGGACCTTA+CGG | + | tig0018755:2125-2144 | Msa1369060:CDS | 50.0% | |
| CCCTCCTCATCCATGTAGTA+AGG | - | tig0018755:2521-2540 | None:intergenic | 50.0% | |
| GACAGACCATGCTTGGAGAA+GGG | - | tig0018755:2829-2848 | None:intergenic | 50.0% | |
| ACATCTGGACAGACCATGCT+TGG | - | tig0018755:2836-2855 | None:intergenic | 50.0% | |
| GGACAGACCATGCTTGGAGA+AGG | - | tig0018755:2830-2849 | None:intergenic | 55.0% | |
| GGACAGACCATGCTTGGAGA+AGG | - | tig0018755:2830-2849 | None:intergenic | 55.0% | |
| CGAGGTGGGTGTGCTTGTGC+TGG | + | tig0018755:2116-2135 | Msa1369060:CDS | 65.0% | |
| CGAGGTGGGTGTGCTTGTGC+TGG | + | tig0018755:2116-2135 | Msa1369060:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018755 | gene | 1771 | 2886 | 1771 | ID=Msa1369060;Name=Msa1369060 |
| tig0018755 | mRNA | 1771 | 2886 | 1771 | ID=Msa1369060-mRNA-1;Parent=Msa1369060;Name=Msa1369060-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|2|0|282 |
| tig0018755 | exon | 1771 | 2208 | 1771 | ID=Msa1369060-mRNA-1:exon:919;Parent=Msa1369060-mRNA-1 |
| tig0018755 | exon | 2476 | 2886 | 2476 | ID=Msa1369060-mRNA-1:exon:920;Parent=Msa1369060-mRNA-1 |
| tig0018755 | CDS | 1771 | 2208 | 1771 | ID=Msa1369060-mRNA-1:cds;Parent=Msa1369060-mRNA-1 |
| tig0018755 | CDS | 2476 | 2886 | 2476 | ID=Msa1369060-mRNA-1:cds;Parent=Msa1369060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
