Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1005200 | AES78176.2 | 71.282 | 390 | 73 | 8 | 174 | 538 | 290 | 665 | 4.92e-167 | 500 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1005200 | sp|O49711|PP335_ARATH | 29.518 | 332 | 198 | 5 | 207 | 529 | 514 | 818 | 2.40e-37 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1005200 | G7KYY3 | 71.282 | 390 | 73 | 8 | 174 | 538 | 290 | 665 | 2.35e-167 | 500 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1005200 | Msa1264020 | 0.806755 | 7.051449e-50 | -8.615850e-47 |
| Msa1005200 | Msa1365040 | -0.808735 | 2.676629e-50 | -8.615850e-47 |
| Msa1005200 | Msa1453080 | 0.810007 | 1.427993e-50 | -8.615850e-47 |
| Msa1005200 | Msa1457670 | -0.801051 | 1.080507e-48 | -8.615850e-47 |
| Msa0333720 | Msa1005200 | -0.813254 | 2.808542e-51 | -8.615850e-47 |
| Msa0910980 | Msa1005200 | -0.809703 | 1.660105e-50 | -8.615850e-47 |
| Msa0946320 | Msa1005200 | 0.806654 | 7.407996e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1005200 | MtrunA17_Chr7g0223551 | 71.947 | 303 | 61 | 7 | 246 | 538 | 1 | 289 | 4.25e-134 | 392 |
| Msa1005200 | MtrunA17_Chr7g0215621 | 54.921 | 315 | 69 | 4 | 239 | 515 | 1 | 280 | 1.38e-86 | 269 |
| Msa1005200 | MtrunA17_Chr4g0075891 | 45.455 | 308 | 117 | 6 | 239 | 541 | 279 | 540 | 2.70e-69 | 232 |
| Msa1005200 | MtrunA17_Chr4g0041921 | 50.896 | 279 | 108 | 4 | 242 | 516 | 551 | 804 | 8.44e-66 | 229 |
| Msa1005200 | MtrunA17_Chr7g0223581 | 89.535 | 86 | 9 | 0 | 246 | 331 | 1 | 86 | 2.29e-45 | 154 |
| Msa1005200 | MtrunA17_Chr5g0413891 | 39.051 | 274 | 118 | 8 | 296 | 535 | 15 | 273 | 5.13e-43 | 155 |
| Msa1005200 | MtrunA17_Chr7g0214831 | 60.317 | 126 | 46 | 2 | 50 | 171 | 155 | 280 | 5.96e-40 | 148 |
| Msa1005200 | MtrunA17_Chr4g0043061 | 64.045 | 89 | 29 | 1 | 86 | 171 | 196 | 284 | 2.33e-31 | 124 |
| Msa1005200 | MtrunA17_Chr8g0337361 | 62.921 | 89 | 30 | 1 | 86 | 171 | 248 | 336 | 7.12e-31 | 124 |
| Msa1005200 | MtrunA17_Chr8g0337481 | 60.674 | 89 | 32 | 1 | 86 | 171 | 131 | 219 | 1.31e-30 | 120 |
| Msa1005200 | MtrunA17_Chr8g0337491 | 60.674 | 89 | 32 | 1 | 86 | 171 | 201 | 289 | 1.16e-29 | 121 |
| Msa1005200 | MtrunA17_Chr8g0337451 | 39.884 | 173 | 88 | 5 | 11 | 171 | 110 | 278 | 1.33e-29 | 119 |
| Msa1005200 | MtrunA17_Chr8g0337371 | 61.798 | 89 | 31 | 1 | 86 | 171 | 236 | 324 | 1.79e-28 | 120 |
| Msa1005200 | MtrunA17_Chr8g0337371 | 59.551 | 89 | 33 | 1 | 86 | 171 | 683 | 771 | 8.81e-28 | 118 |
| Msa1005200 | MtrunA17_Chr8g0337471 | 58.427 | 89 | 34 | 1 | 86 | 171 | 190 | 278 | 5.34e-28 | 114 |
| Msa1005200 | MtrunA17_Chr8g0368851 | 34.043 | 282 | 127 | 10 | 207 | 449 | 36 | 297 | 3.62e-27 | 111 |
| Msa1005200 | MtrunA17_Chr2g0307121 | 57.955 | 88 | 34 | 1 | 87 | 171 | 193 | 280 | 4.52e-26 | 109 |
| Msa1005200 | MtrunA17_Chr2g0322551 | 62.319 | 69 | 26 | 0 | 86 | 154 | 195 | 263 | 1.57e-23 | 102 |
| Msa1005200 | MtrunA17_Chr2g0322541 | 59.420 | 69 | 28 | 0 | 86 | 154 | 195 | 263 | 9.95e-21 | 94.4 |
| Msa1005200 | MtrunA17_Chr2g0322531 | 56.522 | 69 | 30 | 0 | 86 | 154 | 194 | 262 | 5.25e-20 | 91.7 |
| Msa1005200 | MtrunA17_Chr5g0412041 | 36.559 | 186 | 97 | 9 | 163 | 344 | 195 | 363 | 7.11e-16 | 80.5 |
| Msa1005200 | MtrunA17_Chr5g0445921 | 56.667 | 60 | 23 | 1 | 115 | 171 | 13 | 72 | 2.13e-15 | 73.2 |
| Msa1005200 | MtrunA17_Chr4g0045061 | 50.000 | 68 | 32 | 2 | 87 | 154 | 468 | 533 | 7.01e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1005200 | AT4G21880.1 | 29.518 | 332 | 198 | 5 | 207 | 529 | 514 | 818 | 2.44e-38 | 150 |
| Msa1005200 | AT4G21880.2 | 29.518 | 332 | 198 | 5 | 207 | 529 | 470 | 774 | 3.32e-38 | 150 |
| Msa1005200 | AT4G04790.3 | 34.409 | 279 | 154 | 6 | 242 | 516 | 528 | 781 | 1.57e-37 | 148 |
| Msa1005200 | AT4G04790.1 | 34.409 | 279 | 154 | 6 | 242 | 516 | 532 | 785 | 1.77e-37 | 148 |
| Msa1005200 | AT4G04790.2 | 33.333 | 279 | 157 | 4 | 242 | 516 | 395 | 648 | 2.60e-37 | 147 |
| Msa1005200 | AT1G65560.2 | 80.303 | 66 | 13 | 0 | 87 | 152 | 120 | 185 | 9.67e-30 | 118 |
| Msa1005200 | AT1G26320.1 | 57.732 | 97 | 37 | 2 | 86 | 179 | 197 | 292 | 1.72e-29 | 119 |
| Msa1005200 | AT3G03080.1 | 62.921 | 89 | 30 | 1 | 86 | 171 | 196 | 284 | 2.45e-29 | 119 |
| Msa1005200 | AT1G65560.1 | 80.303 | 66 | 13 | 0 | 87 | 152 | 196 | 261 | 4.22e-29 | 118 |
| Msa1005200 | AT5G37980.1 | 59.551 | 89 | 33 | 1 | 86 | 171 | 199 | 287 | 8.18e-28 | 115 |
| Msa1005200 | AT1G26320.2 | 57.143 | 91 | 35 | 2 | 92 | 179 | 198 | 287 | 2.78e-27 | 113 |
| Msa1005200 | AT5G16980.1 | 57.303 | 89 | 35 | 1 | 86 | 171 | 85 | 173 | 2.98e-27 | 110 |
| Msa1005200 | AT5G16980.3 | 57.303 | 89 | 35 | 1 | 86 | 171 | 85 | 173 | 2.98e-27 | 110 |
| Msa1005200 | AT5G37940.1 | 64.103 | 78 | 28 | 0 | 86 | 163 | 199 | 276 | 4.29e-27 | 112 |
| Msa1005200 | AT5G16960.2 | 62.821 | 78 | 29 | 0 | 86 | 163 | 192 | 269 | 9.08e-27 | 111 |
| Msa1005200 | AT5G16960.1 | 62.821 | 78 | 29 | 0 | 86 | 163 | 192 | 269 | 9.08e-27 | 111 |
| Msa1005200 | AT5G16980.2 | 57.303 | 89 | 35 | 1 | 86 | 171 | 151 | 239 | 1.13e-26 | 110 |
| Msa1005200 | AT5G17000.1 | 57.778 | 90 | 35 | 1 | 85 | 171 | 190 | 279 | 1.44e-26 | 111 |
| Msa1005200 | AT5G16970.1 | 57.303 | 89 | 35 | 1 | 86 | 171 | 191 | 279 | 1.91e-26 | 110 |
| Msa1005200 | AT5G16990.1 | 57.303 | 89 | 35 | 1 | 86 | 171 | 189 | 277 | 3.58e-26 | 110 |
| Msa1005200 | AT5G38000.2 | 62.821 | 78 | 29 | 0 | 86 | 163 | 180 | 257 | 4.07e-26 | 109 |
| Msa1005200 | AT5G38000.1 | 62.821 | 78 | 29 | 0 | 86 | 163 | 199 | 276 | 5.54e-26 | 109 |
| Msa1005200 | AT5G38000.3 | 62.821 | 78 | 29 | 0 | 86 | 163 | 199 | 276 | 5.58e-26 | 109 |
| Msa1005200 | AT3G59845.2 | 57.955 | 88 | 34 | 1 | 87 | 171 | 93 | 180 | 8.35e-26 | 106 |
| Msa1005200 | AT3G59845.1 | 57.955 | 88 | 34 | 1 | 87 | 171 | 195 | 282 | 5.35e-25 | 106 |
Find 94 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATCTGAACAATGCTAATT+TGG | 0.192785 | 7_1:-2842201 | Msa1005200:CDS |
| TTTGGAGCAAACTGCATAAA+TGG | 0.201256 | 7_1:-2846563 | Msa1005200:CDS |
| ATGACACATAAAACAGCTTT+AGG | 0.224116 | 7_1:+2843376 | None:intergenic |
| AGAGAAATGGAAAGATTTAC+TGG | 0.236755 | 7_1:-2843876 | Msa1005200:CDS |
| GGGTCCACACATTTGCAATT+TGG | 0.242362 | 7_1:-2842317 | Msa1005200:CDS |
| TGCTATAAAATTTAATTGTT+CGG | 0.276431 | 7_1:+2842511 | None:intergenic |
| AAGCTGCATATGCATGAATA+AGG | 0.283092 | 7_1:+2843655 | None:intergenic |
| CAAACAGATAGGAGCATATT+AGG | 0.288469 | 7_1:+2842236 | None:intergenic |
| GCTATAAAATTTAATTGTTC+GGG | 0.295601 | 7_1:+2842512 | None:intergenic |
| AATTGTTAGGAAAGATTTAG+AGG | 0.309459 | 7_1:-2844405 | Msa1005200:CDS |
| GCAATTTGGATTGGACTTGC+TGG | 0.332582 | 7_1:-2842303 | Msa1005200:CDS |
| TGAACAATGCTAATTTGGTT+TGG | 0.338886 | 7_1:-2842196 | Msa1005200:CDS |
| TAGAATGTATCACGCACTTT+TGG | 0.355401 | 7_1:-2842054 | Msa1005200:CDS |
| TGGAAAGATTTACTGGCTTT+CGG | 0.360154 | 7_1:-2843869 | Msa1005200:CDS |
| AAATAAATGTCAATGCCTTC+AGG | 0.368926 | 7_1:+2844626 | None:intergenic |
| TGCTATGAATCTTAATGTTA+AGG | 0.372419 | 7_1:+2844567 | None:intergenic |
| GAAGGACAGCTTCGGCAAAA+TGG | 0.374335 | 7_1:-2841955 | Msa1005200:CDS |
| TAACGAGTTGGATCCAGATA+TGG | 0.377442 | 7_1:-2844381 | Msa1005200:intron |
| CGAAGTTGAGTGGCGAAGAT+TGG | 0.379728 | 7_1:-2843222 | Msa1005200:CDS |
| CACACATTTGCAATTTGGAT+TGG | 0.379956 | 7_1:-2842312 | Msa1005200:CDS |
| TGACACATAAAACAGCTTTA+GGG | 0.390337 | 7_1:+2843377 | None:intergenic |
| CGAAATGGTTCTTCGGTACT+CGG | 0.400203 | 7_1:-2843188 | Msa1005200:CDS |
| AGTGGCGAAGATTGGGTTCA+AGG | 0.406061 | 7_1:-2843214 | Msa1005200:CDS |
| ATGGGATCGAAAGGGCAATT+GGG | 0.408346 | 7_1:-2846544 | Msa1005200:CDS |
| ATGGCGATGGCGACTTAAGA+TGG | 0.414255 | 7_1:+2843909 | None:intergenic |
| ATTGTTCAGATCTCTTGATA+TGG | 0.424448 | 7_1:+2842211 | None:intergenic |
| AATGGGATCGAAAGGGCAAT+TGG | 0.425468 | 7_1:-2846545 | Msa1005200:CDS |
| GAATTGAGTATCTAAGTAGA+TGG | 0.430636 | 7_1:+2846954 | None:intergenic |
| CATTACGATTTCAAGAGAAA+TGG | 0.436517 | 7_1:-2843889 | Msa1005200:CDS |
| TGAATTTGAGAAAGCAAAAC+AGG | 0.437605 | 7_1:-2843628 | Msa1005200:intron |
| ATAATGGATGCAACTGGCAC+TGG | 0.449200 | 7_1:-2846988 | Msa1005200:CDS |
| GTCTCATCTCTTGCATCGCA+CGG | 0.453769 | 7_1:-2843460 | Msa1005200:CDS |
| ATAGCAGAATTGAAGTTTGT+GGG | 0.454127 | 7_1:-2844550 | Msa1005200:CDS |
| ATTTCAATTAACCACTTCAC+TGG | 0.456205 | 7_1:+2843496 | None:intergenic |
| GAAGTTGAGTGGCGAAGATT+GGG | 0.457819 | 7_1:-2843221 | Msa1005200:CDS |
| CATTTCTCTTGAAATCGTAA+TGG | 0.459589 | 7_1:+2843890 | None:intergenic |
| GAGTTGTTTACACATTTCAA+TGG | 0.462275 | 7_1:+2843066 | None:intergenic |
| GATCTTGAGTTGTCACCAAC+AGG | 0.464567 | 7_1:-2846910 | Msa1005200:CDS |
| CATAGCAGAATTGAAGTTTG+TGG | 0.465638 | 7_1:-2844551 | Msa1005200:CDS |
| GAGGAGGGTGGGATCAGAAG+AGG | 0.476704 | 7_1:-2844455 | Msa1005200:CDS |
| GAACTTCTAAAGAATGAACT+TGG | 0.477987 | 7_1:-2844932 | Msa1005200:CDS |
| TTGATATGGCACAAACAGAT+AGG | 0.478108 | 7_1:+2842225 | None:intergenic |
| TTGGAGCAAACTGCATAAAT+GGG | 0.480756 | 7_1:-2846562 | Msa1005200:CDS |
| AGATTTAGAGGTTAACGAGT+TGG | 0.482432 | 7_1:-2844393 | Msa1005200:CDS |
| ATTCATGCATATGCAGCTTA+CGG | 0.482741 | 7_1:-2843651 | Msa1005200:CDS |
| TTGGAGGAAATCAAGAAAGC+TGG | 0.486524 | 7_1:-2843412 | Msa1005200:CDS |
| ACCTTCTTAGAGCTGCATCC+AGG | 0.490682 | 7_1:+2844873 | None:intergenic |
| TCATGTTGTTTCCGCTCTGA+AGG | 0.491402 | 7_1:-2841973 | Msa1005200:CDS |
| AAGGTTGCGAAATGGTTCTT+CGG | 0.496245 | 7_1:-2843195 | Msa1005200:CDS |
| TTGGGTTCAAGGTTGCGAAA+TGG | 0.497922 | 7_1:-2843203 | Msa1005200:CDS |
| CTTGTAGTATTATGAAGAGA+TGG | 0.501640 | 7_1:-2843718 | Msa1005200:intron |
| ATATTAGGACATTCTATTGA+AGG | 0.507373 | 7_1:+2842251 | None:intergenic |
| TCGTTCATAATGGATGCAAC+TGG | 0.510957 | 7_1:-2846994 | None:intergenic |
| AAGAGTAGATCAGATGGAGG+AGG | 0.517916 | 7_1:-2844471 | Msa1005200:CDS |
| GTAGATCAGATGGAGGAGGG+TGG | 0.519514 | 7_1:-2844467 | Msa1005200:CDS |
| AGCTGCATATGCATGAATAA+GGG | 0.521597 | 7_1:+2843656 | None:intergenic |
| ACCTGGATGCAGCTCTAAGA+AGG | 0.529395 | 7_1:-2844874 | Msa1005200:intron |
| ACAACATGAGAGAAATAACT+TGG | 0.534425 | 7_1:+2841987 | None:intergenic |
| TAGATCAGATGGAGGAGGGT+GGG | 0.538311 | 7_1:-2844466 | Msa1005200:CDS |
| AATGGGGTTGGCAGGGATCG+TGG | 0.541158 | 7_1:-2846607 | Msa1005200:intron |
| CTCCAACAAAACAAGTGCCT+CGG | 0.544653 | 7_1:+2843429 | None:intergenic |
| TGAAATGTGTAAACAACTCA+AGG | 0.548334 | 7_1:-2843062 | Msa1005200:CDS |
| TCCGCTCTGAAGGACAGCTT+CGG | 0.549399 | 7_1:-2841963 | Msa1005200:CDS |
| ACTGCATAAATGGGATCGAA+AGG | 0.552160 | 7_1:-2846553 | Msa1005200:CDS |
| TCTCATCTCTTGCATCGCAC+GGG | 0.553949 | 7_1:-2843459 | Msa1005200:CDS |
| ATGCAATTTACACGGCGAGT+TGG | 0.556620 | 7_1:-2843266 | Msa1005200:CDS |
| TTTACACGGCGAGTTGGAGA+GGG | 0.559152 | 7_1:-2843260 | Msa1005200:CDS |
| ATATTTCAAAATTAGATCAA+AGG | 0.559314 | 7_1:+2842340 | None:intergenic |
| TGTACAAGTATCTGATACGT+AGG | 0.563437 | 7_1:-2841928 | None:intergenic |
| AGTACAAAGAGTAGATCAGA+TGG | 0.565320 | 7_1:-2844477 | Msa1005200:CDS |
| CGCCACTCAACTTCGTGCAT+AGG | 0.565403 | 7_1:+2843230 | None:intergenic |
| TCTTGAAATCGTAATGGCGA+TGG | 0.573161 | 7_1:+2843896 | None:intergenic |
| CTGCATAAATGGGATCGAAA+GGG | 0.573980 | 7_1:-2846552 | Msa1005200:CDS |
| TATGAATCTTAATGTTAAGG+AGG | 0.574577 | 7_1:+2844570 | None:intergenic |
| ATTTACACGGCGAGTTGGAG+AGG | 0.586525 | 7_1:-2843261 | Msa1005200:CDS |
| TGGGATCGAAAGGGCAATTG+GGG | 0.588646 | 7_1:-2846543 | Msa1005200:CDS |
| CAATCCAAATTGCAAATGTG+TGG | 0.592711 | 7_1:+2842313 | None:intergenic |
| CTATAAGGAAGAATTAGACC+TGG | 0.594939 | 7_1:-2844891 | Msa1005200:CDS |
| GTTGAGATTCTCGTACCTGT+TGG | 0.600996 | 7_1:+2846895 | None:intergenic |
| CTCCTATGCACGAAGTTGAG+TGG | 0.603798 | 7_1:-2843232 | Msa1005200:CDS |
| ATGAATCTTAATGTTAAGGA+GGG | 0.615201 | 7_1:+2844571 | None:intergenic |
| GACATTCTATTGAAGGAACA+AGG | 0.619650 | 7_1:+2842258 | None:intergenic |
| AGAGTAGATCAGATGGAGGA+GGG | 0.627268 | 7_1:-2844470 | Msa1005200:CDS |
| ATCAACGCATACCAGTGAAG+TGG | 0.634142 | 7_1:-2843507 | Msa1005200:CDS |
| AGCAGATCTGTGATCTCCCG+AGG | 0.648202 | 7_1:+2842031 | None:intergenic |
| GTACAAGTATCTGATACGTA+GGG | 0.650226 | 7_1:-2841927 | None:intergenic |
| ATGATGCCTAACATGTGATG+TGG | 0.653720 | 7_1:+2846861 | None:intergenic |
| GATGTGTTATGCAATTTACA+CGG | 0.655538 | 7_1:-2843274 | Msa1005200:CDS |
| GCCGAAGCTGTCCTTCAGAG+CGG | 0.656120 | 7_1:+2841962 | None:intergenic |
| GTTTCGGAGATAGCTACGTG+AGG | 0.660336 | 7_1:-2842154 | Msa1005200:intron |
| ACAAAGAGTAGATCAGATGG+AGG | 0.662821 | 7_1:-2844474 | Msa1005200:CDS |
| TTACACGGCGAGTTGGAGAG+GGG | 0.672328 | 7_1:-2843259 | Msa1005200:CDS |
| GGGCGGTGACATGCTTGATG+CGG | 0.708431 | 7_1:-2844594 | Msa1005200:CDS |
| ATCGCACGGGAAATTGTCCG+AGG | 0.710871 | 7_1:-2843446 | Msa1005200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTTTGAAATAGAAA+AGG | - | chr7_1:2842407-2842426 | Msa1005200:intron | 10.0% |
| !! | TTAAAAAAAAATATATGGTA+AGG | + | chr7_1:2844735-2844754 | None:intergenic | 10.0% |
| !! | CTTGTTTAAAAAAAAATATA+TGG | + | chr7_1:2844740-2844759 | None:intergenic | 10.0% |
| !!! | TATATTTTTTTTTAAACAAG+AGG | - | chr7_1:2844740-2844759 | Msa1005200:intron | 10.0% |
| !! | TAAAATCATACTTTAATATT+GGG | + | chr7_1:2845786-2845805 | None:intergenic | 10.0% |
| !! | ATAAAATCATACTTTAATAT+TGG | + | chr7_1:2845787-2845806 | None:intergenic | 10.0% |
| !!! | TTATAAGAATTACATTTTTT+TGG | - | chr7_1:2846497-2846516 | Msa1005200:CDS | 10.0% |
| !! | TATAAAGATTGAAACAAAAT+AGG | - | chr7_1:2842985-2843004 | Msa1005200:intron | 15.0% |
| !! | TTTGTATAAAATGCTATTAT+TGG | - | chr7_1:2843045-2843064 | Msa1005200:CDS | 15.0% |
| !! | AGCATACATTAAAAAAAAAA+AGG | + | chr7_1:2845107-2845126 | None:intergenic | 15.0% |
| !!! | AACAGTATTTTATAGATTTA+TGG | + | chr7_1:2846176-2846195 | None:intergenic | 15.0% |
| !! | TAAATCTATAAAATACTGTT+AGG | - | chr7_1:2846176-2846195 | Msa1005200:intron | 15.0% |
| !! | ATTCAATATACAATTATTAG+TGG | - | chr7_1:2846280-2846299 | Msa1005200:intron | 15.0% |
| !! | TGCTATAAAATTTAATTGTT+CGG | + | chr7_1:2846406-2846425 | None:intergenic | 15.0% |
| !! | ATATTTCAAAATTAGATCAA+AGG | + | chr7_1:2846577-2846596 | None:intergenic | 15.0% |
| !!! | TTTGATCTAATTTTGAAATA+TGG | - | chr7_1:2846576-2846595 | Msa1005200:CDS | 15.0% |
| !!! | TTGATCTAATTTTGAAATAT+GGG | - | chr7_1:2846577-2846596 | Msa1005200:CDS | 15.0% |
| !! | AGAAGGAAAAAATAATATAA+AGG | + | chr7_1:2846797-2846816 | None:intergenic | 15.0% |
| !! | AAGGAAAATATTATAAAAGA+AGG | + | chr7_1:2846814-2846833 | None:intergenic | 15.0% |
| !! | TTGAATAAAATGCAATGATT+GGG | + | chr7_1:2842211-2842230 | None:intergenic | 20.0% |
| !! | TTTGAATAAAATGCAATGAT+TGG | + | chr7_1:2842212-2842231 | None:intergenic | 20.0% |
| !!! | TATAAAAGAGTTGATGAAAT+GGG | - | chr7_1:2842290-2842309 | Msa1005200:CDS | 20.0% |
| !!! | AGAAGTGAAATTTTTGTATT+TGG | - | chr7_1:2842333-2842352 | Msa1005200:CDS | 20.0% |
| !!! | AATTCTACAAAAAGTATTTG+AGG | + | chr7_1:2842669-2842688 | None:intergenic | 20.0% |
| !!! | TTTGAGATAGAAAAGAAAAA+AGG | + | chr7_1:2842843-2842862 | None:intergenic | 20.0% |
| !!! | GTACATGTTTTAAAAAGAAA+AGG | - | chr7_1:2843157-2843176 | Msa1005200:intron | 20.0% |
| !!! | GCTTGAAAAAAAACTATTTT+GGG | + | chr7_1:2843321-2843340 | None:intergenic | 20.0% |
| !!! | TGCTTGAAAAAAAACTATTT+TGG | + | chr7_1:2843322-2843341 | None:intergenic | 20.0% |
| !! | ATTACAAACAAATGGAATAA+TGG | + | chr7_1:2843475-2843494 | None:intergenic | 20.0% |
| !!! | GGATGTTATAAAATTTTGAA+TGG | - | chr7_1:2844079-2844098 | Msa1005200:intron | 20.0% |
| !!! | GTTATAAAATTTTGAATGGT+TGG | - | chr7_1:2844083-2844102 | Msa1005200:intron | 20.0% |
| !! | AAAAAAGTTTAGATAAACGA+AGG | + | chr7_1:2844243-2844262 | None:intergenic | 20.0% |
| !!! | TTTATCTAAACTTTTTTCGT+TGG | - | chr7_1:2844246-2844265 | Msa1005200:intron | 20.0% |
| !!! | ACAATTCTTATAGTTTTTCT+AGG | + | chr7_1:2844495-2844514 | None:intergenic | 20.0% |
| !! | GAAAAACTATAAGAATTGTT+AGG | - | chr7_1:2844496-2844515 | Msa1005200:CDS | 20.0% |
| !!! | ATGTAAGTGTAAAAGTTTTA+CGG | + | chr7_1:2844834-2844853 | None:intergenic | 20.0% |
| !! | ATAAATAGTGAAGTAACTAT+GGG | - | chr7_1:2844904-2844923 | Msa1005200:CDS | 20.0% |
| !!! | TCATTTTCTATTGAAAATCA+AGG | - | chr7_1:2844967-2844986 | Msa1005200:intron | 20.0% |
| !! | ATACAATGAACATAAACAAA+TGG | + | chr7_1:2845814-2845833 | None:intergenic | 20.0% |
| !! | TATAACTTGAATCATTGATA+TGG | + | chr7_1:2845975-2845994 | None:intergenic | 20.0% |
| !!! | ATATCAATGATTCAAGTTAT+AGG | - | chr7_1:2845974-2845993 | Msa1005200:intron | 20.0% |
| !!! | TATCAATGATTCAAGTTATA+GGG | - | chr7_1:2845975-2845994 | Msa1005200:intron | 20.0% |
| !! | GCTATAAAATTTAATTGTTC+GGG | + | chr7_1:2846405-2846424 | None:intergenic | 20.0% |
| !! | CTTTTATGAAATCATCAACA+AGG | - | chr7_1:2841982-2842001 | Msa1005200:CDS | 25.0% |
| ! | ATCACAGTGAATTCATAATT+AGG | + | chr7_1:2842086-2842105 | None:intergenic | 25.0% |
| !!! | CTATTGTTGTTTCATTTGAA+TGG | - | chr7_1:2842235-2842254 | Msa1005200:CDS | 25.0% |
| !!! | GTATAAAAGAGTTGATGAAA+TGG | - | chr7_1:2842289-2842308 | Msa1005200:CDS | 25.0% |
| !!! | ATAAAAGAGTTGATGAAATG+GGG | - | chr7_1:2842291-2842310 | Msa1005200:CDS | 25.0% |
| !!! | GTATTTGAGGCTATTTTAAT+TGG | + | chr7_1:2842656-2842675 | None:intergenic | 25.0% |
| !!! | ATACAAAAGAGTTGATGAAA+TGG | + | chr7_1:2842968-2842987 | None:intergenic | 25.0% |
| ! | GCTCATAAACTAATATTTGT+CGG | - | chr7_1:2843067-2843086 | Msa1005200:CDS | 25.0% |
| !!! | TGAAAAAAAACTATTTTGGG+AGG | + | chr7_1:2843318-2843337 | None:intergenic | 25.0% |
| ! | TACTTCTACTATGTAATTCA+AGG | + | chr7_1:2843446-2843465 | None:intergenic | 25.0% |
| ! | TGAATTACATAGTAGAAGTA+AGG | - | chr7_1:2843446-2843465 | Msa1005200:CDS | 25.0% |
| ! | ATTGGCAAATTACAAACAAA+TGG | + | chr7_1:2843483-2843502 | None:intergenic | 25.0% |
| ! | TTAGCTTATCTTACAACTTA+AGG | - | chr7_1:2843629-2843648 | Msa1005200:CDS | 25.0% |
| ! | TAGCTTATCTTACAACTTAA+GGG | - | chr7_1:2843630-2843649 | Msa1005200:CDS | 25.0% |
| !! | ATGTATTCATAAGGTATCTA+TGG | + | chr7_1:2843740-2843759 | None:intergenic | 25.0% |
| ! | AGTTGTAAGATGTATTCATA+AGG | + | chr7_1:2843749-2843768 | None:intergenic | 25.0% |
| ! | ATTTAAATTTCCGAGACAAA+TGG | + | chr7_1:2844109-2844128 | None:intergenic | 25.0% |
| ! | CTCGGAAATTTAAATGATTT+AGG | - | chr7_1:2844114-2844133 | Msa1005200:intron | 25.0% |
| !!! | TGACATTTATTTTGATAACG+TGG | - | chr7_1:2844299-2844318 | Msa1005200:intron | 25.0% |
| !!! | GACATTTATTTTGATAACGT+GGG | - | chr7_1:2844300-2844319 | Msa1005200:intron | 25.0% |
| ! | ATGAATCTTAATGTTAAGGA+GGG | + | chr7_1:2844346-2844365 | None:intergenic | 25.0% |
| ! | TATGAATCTTAATGTTAAGG+AGG | + | chr7_1:2844347-2844366 | None:intergenic | 25.0% |
| ! | TGCTATGAATCTTAATGTTA+AGG | + | chr7_1:2844350-2844369 | None:intergenic | 25.0% |
| ! | AATTGTTAGGAAAGATTTAG+AGG | - | chr7_1:2844509-2844528 | Msa1005200:CDS | 25.0% |
| !! | GTTTTATCATAAACCATATC+TGG | + | chr7_1:2844549-2844568 | None:intergenic | 25.0% |
| ! | TGGTTTATGATAAAACACTA+TGG | - | chr7_1:2844553-2844572 | Msa1005200:CDS | 25.0% |
| !! | TGTAAGTGTAAAAGTTTTAC+GGG | + | chr7_1:2844833-2844852 | None:intergenic | 25.0% |
| ! | AAATTACAGAAATGGGAAAA+AGG | + | chr7_1:2844873-2844892 | None:intergenic | 25.0% |
| !! | TTTTCCCATTTCTGTAATTT+CGG | - | chr7_1:2844873-2844892 | Msa1005200:intron | 25.0% |
| ! | CATAAATAGTGAAGTAACTA+TGG | - | chr7_1:2844903-2844922 | Msa1005200:CDS | 25.0% |
| !!! | ATGAGTTTTAAGGTTTAAAG+TGG | + | chr7_1:2845600-2845619 | None:intergenic | 25.0% |
| !! | ACAATGATTGATGAGTTTTA+AGG | + | chr7_1:2845610-2845629 | None:intergenic | 25.0% |
| ! | CGGTTCAATACAAAAATTTA+AGG | - | chr7_1:2845746-2845765 | Msa1005200:intron | 25.0% |
| ! | ATTTCCAATGATCATAACTT+TGG | - | chr7_1:2845929-2845948 | Msa1005200:intron | 25.0% |
| ! | TTTCCAATGATCATAACTTT+GGG | - | chr7_1:2845930-2845949 | Msa1005200:intron | 25.0% |
| !! | ATCAATGATTCAAGTTATAG+GGG | - | chr7_1:2845976-2845995 | Msa1005200:intron | 25.0% |
| ! | ACTATAAATGCTTGACATTT+GGG | - | chr7_1:2846031-2846050 | Msa1005200:intron | 25.0% |
| ! | TTGACATTTGGGTATTAATT+TGG | - | chr7_1:2846042-2846061 | Msa1005200:intron | 25.0% |
| ! | TGCATTAAAGAATGAATTGA+TGG | + | chr7_1:2846136-2846155 | None:intergenic | 25.0% |
| ! | CAATATACAATTATTAGTGG+AGG | - | chr7_1:2846283-2846302 | Msa1005200:intron | 25.0% |
| !! | CATAACCATTAAACTTTTCA+GGG | - | chr7_1:2846360-2846379 | Msa1005200:intron | 25.0% |
| ! | GATCTAATAAAAAAAGAGGT+TGG | - | chr7_1:2846633-2846652 | Msa1005200:intron | 25.0% |
| ! | ATATTAGGACATTCTATTGA+AGG | + | chr7_1:2846666-2846685 | None:intergenic | 25.0% |
| !! | TGGAAAAAATATGCACTTTT+TGG | - | chr7_1:2846738-2846757 | Msa1005200:intron | 25.0% |
| !!! | AAATATGCACTTTTTGGTTT+CGG | - | chr7_1:2846744-2846763 | Msa1005200:intron | 25.0% |
| ! | AACCATAAAGTAACATCATA+AGG | + | chr7_1:2846839-2846858 | None:intergenic | 25.0% |
| GAATTGAGTATCTAAGTAGA+TGG | + | chr7_1:2841963-2841982 | None:intergenic | 30.0% | |
| CAAAATGAACACCTAACTAT+AGG | - | chr7_1:2842149-2842168 | Msa1005200:intron | 30.0% | |
| ! | AATTTTACCCTCCTATAGTT+AGG | + | chr7_1:2842163-2842182 | None:intergenic | 30.0% |
| TAATTCTACGAAAACCTTTG+AGG | - | chr7_1:2842574-2842593 | Msa1005200:intron | 30.0% | |
| ACATTAGCATCAAGAGATTA+TGG | + | chr7_1:2842621-2842640 | None:intergenic | 30.0% | |
| !!! | TTTGAGGCTATTTTAATTGG+AGG | + | chr7_1:2842653-2842672 | None:intergenic | 30.0% |
| CATAAGATGATTGATAAGCT+AGG | + | chr7_1:2842711-2842730 | None:intergenic | 30.0% | |
| CTAGCTTATCAATCATCTTA+TGG | - | chr7_1:2842709-2842728 | Msa1005200:intron | 30.0% | |
| TCAAAAGGAAAATACACGTA+AGG | + | chr7_1:2842808-2842827 | None:intergenic | 30.0% | |
| CTCAAAATGATAATAAGCTC+AGG | - | chr7_1:2842857-2842876 | Msa1005200:intron | 30.0% | |
| TTGGATTATAAGGACAATTG+AGG | + | chr7_1:2842885-2842904 | None:intergenic | 30.0% | |
| TCAATTGTCCTTATAATCCA+AGG | - | chr7_1:2842884-2842903 | Msa1005200:intron | 30.0% | |
| AACTACATCCTTGGATTATA+AGG | + | chr7_1:2842895-2842914 | None:intergenic | 30.0% | |
| TATAATCCAAGGATGTAGTT+TGG | - | chr7_1:2842895-2842914 | Msa1005200:intron | 30.0% | |
| ! | ATTTTACCCTCCTACAATAA+TGG | - | chr7_1:2843095-2843114 | Msa1005200:intron | 30.0% |
| ! | TTTTACCCTCCTACAATAAT+GGG | - | chr7_1:2843096-2843115 | Msa1005200:intron | 30.0% |
| !! | TTTTGTTTAGGCGAATGTAT+AGG | - | chr7_1:2843240-2843259 | Msa1005200:CDS | 30.0% |
| ! | TAATTTGCCAATGAACAACT+TGG | - | chr7_1:2843491-2843510 | Msa1005200:CDS | 30.0% |
| TGTTCATAAGCTATACGAAA+GGG | + | chr7_1:2843558-2843577 | None:intergenic | 30.0% | |
| TTGTTCATAAGCTATACGAA+AGG | + | chr7_1:2843559-2843578 | None:intergenic | 30.0% | |
| AGCAAAGTAAACTAAATGTC+TGG | + | chr7_1:2843931-2843950 | None:intergenic | 30.0% | |
| ! | GAACTTCTAAAGAATGAACT+TGG | - | chr7_1:2843982-2844001 | Msa1005200:intron | 30.0% |
| AAATAAATGTCAATGCCTTC+AGG | + | chr7_1:2844291-2844310 | None:intergenic | 30.0% | |
| !!! | ATTTATTTTGATAACGTGGG+CGG | - | chr7_1:2844303-2844322 | Msa1005200:intron | 30.0% |
| ATAGCAGAATTGAAGTTTGT+GGG | - | chr7_1:2844364-2844383 | Msa1005200:intron | 30.0% | |
| TTTCCCATTTCTGTAATTTC+GGG | - | chr7_1:2844874-2844893 | Msa1005200:intron | 30.0% | |
| TTTCCCGAAATTACAGAAAT+GGG | + | chr7_1:2844880-2844899 | None:intergenic | 30.0% | |
| ATTTCCCGAAATTACAGAAA+TGG | + | chr7_1:2844881-2844900 | None:intergenic | 30.0% | |
| CATTTCTCTTGAAATCGTAA+TGG | + | chr7_1:2845027-2845046 | None:intergenic | 30.0% | |
| CATTACGATTTCAAGAGAAA+TGG | - | chr7_1:2845025-2845044 | Msa1005200:intron | 30.0% | |
| AGAGAAATGGAAAGATTTAC+TGG | - | chr7_1:2845038-2845057 | Msa1005200:intron | 30.0% | |
| CTTGTAGTATTATGAAGAGA+TGG | - | chr7_1:2845196-2845215 | Msa1005200:intron | 30.0% | |
| TGAATTTGAGAAAGCAAAAC+AGG | - | chr7_1:2845286-2845305 | Msa1005200:intron | 30.0% | |
| TAGAACAACCTGTAATGTTA+AGG | + | chr7_1:2845386-2845405 | None:intergenic | 30.0% | |
| ATTTCAATTAACCACTTCAC+TGG | + | chr7_1:2845421-2845440 | None:intergenic | 30.0% | |
| TGACACATAAAACAGCTTTA+GGG | + | chr7_1:2845540-2845559 | None:intergenic | 30.0% | |
| ATGACACATAAAACAGCTTT+AGG | + | chr7_1:2845541-2845560 | None:intergenic | 30.0% | |
| !! | TAAAGCTGTTTTATGTGTCA+TGG | - | chr7_1:2845540-2845559 | Msa1005200:intron | 30.0% |
| !!! | GTTTTAAGGTTTAAAGTGGA+AGG | + | chr7_1:2845596-2845615 | None:intergenic | 30.0% |
| ATCAATCATTGTACACTCTT+AGG | - | chr7_1:2845618-2845637 | Msa1005200:intron | 30.0% | |
| GATGTGTTATGCAATTTACA+CGG | - | chr7_1:2845640-2845659 | Msa1005200:intron | 30.0% | |
| GAGTTGTTTACACATTTCAA+TGG | + | chr7_1:2845851-2845870 | None:intergenic | 30.0% | |
| TGAAATGTGTAAACAACTCA+AGG | - | chr7_1:2845852-2845871 | Msa1005200:intron | 30.0% | |
| CACTATAAATGCTTGACATT+TGG | - | chr7_1:2846030-2846049 | Msa1005200:intron | 30.0% | |
| ATGTAAAACTCAAAACGCAT+GGG | + | chr7_1:2846339-2846358 | None:intergenic | 30.0% | |
| ! | GCATAACCATTAAACTTTTC+AGG | - | chr7_1:2846359-2846378 | Msa1005200:intron | 30.0% |
| TTGAACCCTGAAAAGTTTAA+TGG | + | chr7_1:2846368-2846387 | None:intergenic | 30.0% | |
| GTTTCCTTATGACTTGAATA+AGG | - | chr7_1:2846466-2846485 | Msa1005200:intron | 30.0% | |
| GAATCCTTATTCAAGTCATA+AGG | + | chr7_1:2846473-2846492 | None:intergenic | 30.0% | |
| GCTGGATCTAATAAAAAAAG+AGG | - | chr7_1:2846629-2846648 | Msa1005200:intron | 30.0% | |
| ATTGTTCAGATCTCTTGATA+TGG | + | chr7_1:2846706-2846725 | None:intergenic | 30.0% | |
| AGATCTGAACAATGCTAATT+TGG | - | chr7_1:2846713-2846732 | Msa1005200:intron | 30.0% | |
| TGAACAATGCTAATTTGGTT+TGG | - | chr7_1:2846718-2846737 | Msa1005200:intron | 30.0% | |
| AAAGTAACATCATAAGGAGA+AGG | + | chr7_1:2846833-2846852 | None:intergenic | 30.0% | |
| !! | CTCCTTATGATGTTACTTTA+TGG | - | chr7_1:2846834-2846853 | Msa1005200:intron | 30.0% |
| ACAACATGAGAGAAATAACT+TGG | + | chr7_1:2846930-2846949 | None:intergenic | 30.0% | |
| TCAATTCCACATCACATGTT+AGG | - | chr7_1:2842047-2842066 | Msa1005200:CDS | 35.0% | |
| AATGAACACCTAACTATAGG+AGG | - | chr7_1:2842152-2842171 | Msa1005200:intron | 35.0% | |
| ATGAACACCTAACTATAGGA+GGG | - | chr7_1:2842153-2842172 | Msa1005200:intron | 35.0% | |
| AGGAGGGTAAAATTACAACA+TGG | - | chr7_1:2842169-2842188 | Msa1005200:CDS | 35.0% | |
| ! | TTTGGAGCAAACTGCATAAA+TGG | - | chr7_1:2842351-2842370 | Msa1005200:intron | 35.0% |
| TTGGAGCAAACTGCATAAAT+GGG | - | chr7_1:2842352-2842371 | Msa1005200:intron | 35.0% | |
| AAAGGAAAAAGACGTTGACA+AGG | - | chr7_1:2842425-2842444 | Msa1005200:intron | 35.0% | |
| ! | CAATTTGCAAGTGTTGTCTT+TGG | + | chr7_1:2842489-2842508 | None:intergenic | 35.0% |
| CAAAGACAACACTTGCAAAT+TGG | - | chr7_1:2842487-2842506 | Msa1005200:CDS | 35.0% | |
| TTGAAGATCCACAAGATGAT+TGG | - | chr7_1:2842524-2842543 | Msa1005200:CDS | 35.0% | |
| !! | AAGCATTGAAATAGCCTCAA+AGG | + | chr7_1:2842591-2842610 | None:intergenic | 35.0% |
| AGATGATTGATAAGCTAGGA+TGG | + | chr7_1:2842707-2842726 | None:intergenic | 35.0% | |
| !! | AAAGAAAAAAGGTGTTGACG+TGG | + | chr7_1:2842832-2842851 | None:intergenic | 35.0% |
| ! | ATCAGAGAAATTTTTGTGCC+TGG | + | chr7_1:2842922-2842941 | None:intergenic | 35.0% |
| !! | AAGAGTTGATGAAATGGTTG+AGG | + | chr7_1:2842962-2842981 | None:intergenic | 35.0% |
| ATCTACCCATTATTGTAGGA+GGG | + | chr7_1:2843104-2843123 | None:intergenic | 35.0% | |
| TCAACCTAATGTCACAGATT+TGG | + | chr7_1:2843964-2843983 | None:intergenic | 35.0% | |
| !! | CGACGAAGCTTTTAACTATA+AGG | - | chr7_1:2844008-2844027 | Msa1005200:intron | 35.0% |
| CTATAAGGAAGAATTAGACC+TGG | - | chr7_1:2844023-2844042 | Msa1005200:intron | 35.0% | |
| !! | AACTCAGAAGTGCTTCTATA+AGG | + | chr7_1:2844163-2844182 | None:intergenic | 35.0% |
| TGAATACAGCTTATCCAAAC+AGG | + | chr7_1:2844196-2844215 | None:intergenic | 35.0% | |
| ! | ATTGACAGGTATTTTCCTGA+AGG | - | chr7_1:2844273-2844292 | Msa1005200:intron | 35.0% |
| CATAGCAGAATTGAAGTTTG+TGG | - | chr7_1:2844363-2844382 | Msa1005200:intron | 35.0% | |
| ! | ACAACATCTACGAGTCTTTT+AGG | + | chr7_1:2844417-2844436 | None:intergenic | 35.0% |
| AGTACAAAGAGTAGATCAGA+TGG | - | chr7_1:2844437-2844456 | Msa1005200:CDS | 35.0% | |
| AGATTTAGAGGTTAACGAGT+TGG | - | chr7_1:2844521-2844540 | Msa1005200:CDS | 35.0% | |
| AACAACAATCAAGCCTTAAG+TGG | + | chr7_1:2844604-2844623 | None:intergenic | 35.0% | |
| AAATATGCTCCAGCATATGT+AGG | - | chr7_1:2844669-2844688 | Msa1005200:intron | 35.0% | |
| AATATGCTCCAGCATATGTA+GGG | - | chr7_1:2844670-2844689 | Msa1005200:intron | 35.0% | |
| GCTGTATACAATACACCAAA+TGG | + | chr7_1:2844713-2844732 | None:intergenic | 35.0% | |
| !! | TGGAAAGATTTACTGGCTTT+CGG | - | chr7_1:2845045-2845064 | Msa1005200:intron | 35.0% |
| AGCTGCATATGCATGAATAA+GGG | + | chr7_1:2845261-2845280 | None:intergenic | 35.0% | |
| AAGCTGCATATGCATGAATA+AGG | + | chr7_1:2845262-2845281 | None:intergenic | 35.0% | |
| ATTCATGCATATGCAGCTTA+CGG | - | chr7_1:2845263-2845282 | Msa1005200:intron | 35.0% | |
| TCCTTCTACAGTTTCTCTTT+CGG | - | chr7_1:2845330-2845349 | Msa1005200:intron | 35.0% | |
| AACATGCTAAGTCCTTTACA+AGG | + | chr7_1:2845361-2845380 | None:intergenic | 35.0% | |
| CATGTTGTCCTTAACATTAC+AGG | - | chr7_1:2845375-2845394 | Msa1005200:intron | 35.0% | |
| ! | CTGTTTTATGTGTCATGGTA+AGG | - | chr7_1:2845545-2845564 | Msa1005200:intron | 35.0% |
| TTGCCCAAAGTTATGATCAT+TGG | + | chr7_1:2845936-2845955 | None:intergenic | 35.0% | |
| ATGATCATAACTTTGGGCAA+AGG | - | chr7_1:2845936-2845955 | Msa1005200:intron | 35.0% | |
| TGATCATAACTTTGGGCAAA+GGG | - | chr7_1:2845937-2845956 | Msa1005200:intron | 35.0% | |
| ! | GATTTCGAGTAAGAGAATCA+GGG | + | chr7_1:2846111-2846130 | None:intergenic | 35.0% |
| ! | TGATTTCGAGTAAGAGAATC+AGG | + | chr7_1:2846112-2846131 | None:intergenic | 35.0% |
| TTAATGCATGAGTGAATTGC+TGG | - | chr7_1:2846148-2846167 | Msa1005200:intron | 35.0% | |
| ATCAAACCTAAAGGTTAGTG+TGG | - | chr7_1:2846309-2846328 | Msa1005200:intron | 35.0% | |
| TGTAAAACTCAAAACGCATG+GGG | + | chr7_1:2846338-2846357 | None:intergenic | 35.0% | |
| CATGTAAAACTCAAAACGCA+TGG | + | chr7_1:2846340-2846359 | None:intergenic | 35.0% | |
| ! | TACTGGTCTCATGTATGTAT+AGG | - | chr7_1:2846551-2846570 | Msa1005200:CDS | 35.0% |
| CAATCCAAATTGCAAATGTG+TGG | + | chr7_1:2846604-2846623 | None:intergenic | 35.0% | |
| CACACATTTGCAATTTGGAT+TGG | - | chr7_1:2846602-2846621 | Msa1005200:intron | 35.0% | |
| GACATTCTATTGAAGGAACA+AGG | + | chr7_1:2846659-2846678 | None:intergenic | 35.0% | |
| ! | CAAACAGATAGGAGCATATT+AGG | + | chr7_1:2846681-2846700 | None:intergenic | 35.0% |
| TTGATATGGCACAAACAGAT+AGG | + | chr7_1:2846692-2846711 | None:intergenic | 35.0% | |
| ! | TAGAATGTATCACGCACTTT+TGG | - | chr7_1:2846860-2846879 | Msa1005200:intron | 35.0% |
| ATGATGCCTAACATGTGATG+TGG | + | chr7_1:2842056-2842075 | None:intergenic | 40.0% | |
| !! | AAGAGTTGATGAAATGGGGT+TGG | - | chr7_1:2842295-2842314 | Msa1005200:CDS | 40.0% |
| ACTGCATAAATGGGATCGAA+AGG | - | chr7_1:2842361-2842380 | Msa1005200:intron | 40.0% | |
| CTGCATAAATGGGATCGAAA+GGG | - | chr7_1:2842362-2842381 | Msa1005200:intron | 40.0% | |
| AGACGTTGACAAGGTTCAAA+AGG | - | chr7_1:2842434-2842453 | Msa1005200:intron | 40.0% | |
| CAAGCTTACCAATCATCTTG+TGG | + | chr7_1:2842535-2842554 | None:intergenic | 40.0% | |
| CACAAGATGATTGGTAAGCT+TGG | - | chr7_1:2842533-2842552 | Msa1005200:CDS | 40.0% | |
| TTGATGAAATGGTTGAGGCA+GGG | + | chr7_1:2842957-2842976 | None:intergenic | 40.0% | |
| CATCTACCCATTATTGTAGG+AGG | + | chr7_1:2843105-2843124 | None:intergenic | 40.0% | |
| GAGCATCTACCCATTATTGT+AGG | + | chr7_1:2843108-2843127 | None:intergenic | 40.0% | |
| !! | CAGTTACGTAGTCTTGCTTT+TGG | + | chr7_1:2843211-2843230 | None:intergenic | 40.0% |
| TTTGGGGAAGTTTCTGCAAT+AGG | + | chr7_1:2843374-2843393 | None:intergenic | 40.0% | |
| CAATGAACAACTTGGACTAC+CGG | - | chr7_1:2843499-2843518 | Msa1005200:CDS | 40.0% | |
| TCATAAGCTATACGAAAGGG+TGG | + | chr7_1:2843555-2843574 | None:intergenic | 40.0% | |
| CTCACCAAATCTGTGACATT+AGG | - | chr7_1:2843957-2843976 | Msa1005200:intron | 40.0% | |
| GAAGGTGAGTTTCATGTACA+AGG | - | chr7_1:2844058-2844077 | Msa1005200:intron | 40.0% | |
| !! | AAGCACTTCTGAGTTCTGAA+CGG | - | chr7_1:2844168-2844187 | Msa1005200:intron | 40.0% |
| !!! | TTTTCGTTGGCTCAATTGAC+AGG | - | chr7_1:2844259-2844278 | Msa1005200:intron | 40.0% |
| ACAAAGAGTAGATCAGATGG+AGG | - | chr7_1:2844440-2844459 | Msa1005200:CDS | 40.0% | |
| ! | TAACGAGTTGGATCCAGATA+TGG | - | chr7_1:2844533-2844552 | Msa1005200:CDS | 40.0% |
| AATGTAACCCACTCCACTTA+AGG | - | chr7_1:2844588-2844607 | Msa1005200:CDS | 40.0% | |
| AATCAAGCCTTAAGTGGAGT+GGG | + | chr7_1:2844598-2844617 | None:intergenic | 40.0% | |
| ! | TAAAAGTTTTACGGGAGCCT+TGG | + | chr7_1:2844825-2844844 | None:intergenic | 40.0% |
| TCTTGAAATCGTAATGGCGA+TGG | + | chr7_1:2845021-2845040 | None:intergenic | 40.0% | |
| CAAAAACTTCTTCTGCGAAG+TGG | + | chr7_1:2845235-2845254 | None:intergenic | 40.0% | |
| TCCGAAAGAGAAACTGTAGA+AGG | + | chr7_1:2845334-2845353 | None:intergenic | 40.0% | |
| TTGGAGGAAATCAAGAAAGC+TGG | - | chr7_1:2845502-2845521 | Msa1005200:intron | 40.0% | |
| AAGGTTGCGAAATGGTTCTT+CGG | - | chr7_1:2845719-2845738 | Msa1005200:intron | 40.0% | |
| GATCATAACTTTGGGCAAAG+GGG | - | chr7_1:2845938-2845957 | Msa1005200:intron | 40.0% | |
| ! | GGTGTTTTCTCTCATGTGAA+GGG | - | chr7_1:2845997-2846016 | Msa1005200:intron | 40.0% |
| ATACTGTTAGGAGATACGCT+TGG | - | chr7_1:2846188-2846207 | Msa1005200:intron | 40.0% | |
| TGGTTGTGCAATACACATCA+AGG | - | chr7_1:2846213-2846232 | Msa1005200:intron | 40.0% | |
| AGGAACTCATAGTATCCTGA+AGG | - | chr7_1:2846233-2846252 | Msa1005200:intron | 40.0% | |
| GGAACTCATAGTATCCTGAA+GGG | - | chr7_1:2846234-2846253 | Msa1005200:intron | 40.0% | |
| GAACTCATAGTATCCTGAAG+GGG | - | chr7_1:2846235-2846254 | Msa1005200:intron | 40.0% | |
| CAGTATGTCATGCTTCATAC+AGG | + | chr7_1:2846536-2846555 | None:intergenic | 40.0% | |
| CTGTATGAAGCATGACATAC+TGG | - | chr7_1:2846534-2846553 | Msa1005200:CDS | 40.0% | |
| ! | GATCTTGAGTTGTCACCAAC+AGG | - | chr7_1:2842004-2842023 | Msa1005200:CDS | 45.0% |
| GTTGAGATTCTCGTACCTGT+TGG | + | chr7_1:2842022-2842041 | None:intergenic | 45.0% | |
| ! | TTGATGAAATGGGGTTGGCA+GGG | - | chr7_1:2842300-2842319 | Msa1005200:CDS | 45.0% |
| AATGGGATCGAAAGGGCAAT+TGG | - | chr7_1:2842369-2842388 | Msa1005200:intron | 45.0% | |
| ATGGGATCGAAAGGGCAATT+GGG | - | chr7_1:2842370-2842389 | Msa1005200:intron | 45.0% | |
| !! | AGGTGTTGACGTGGTTCAAA+AGG | + | chr7_1:2842823-2842842 | None:intergenic | 45.0% |
| ! | GTTGATGAAATGGTTGAGGC+AGG | + | chr7_1:2842958-2842977 | None:intergenic | 45.0% |
| !! | CTGCGTCGATGCTTTTGTTT+AGG | - | chr7_1:2843228-2843247 | Msa1005200:CDS | 45.0% |
| !!! | TCGCAAGTTAGCGGATTTTG+GGG | + | chr7_1:2843390-2843409 | None:intergenic | 45.0% |
| !!! | CTCGCAAGTTAGCGGATTTT+GGG | + | chr7_1:2843391-2843410 | None:intergenic | 45.0% |
| TAACTGTGCTCGCAAGTTAG+CGG | + | chr7_1:2843399-2843418 | None:intergenic | 45.0% | |
| CGGTAGTCCAAGTTGTTCAT+TGG | + | chr7_1:2843501-2843520 | None:intergenic | 45.0% | |
| GTTGGAGCGTAACTCTTATC+CGG | + | chr7_1:2843521-2843540 | None:intergenic | 45.0% | |
| ! | GAATGGTTGGCCATTTGTCT+CGG | - | chr7_1:2844096-2844115 | Msa1005200:intron | 45.0% |
| !! | AGCACTTCTGAGTTCTGAAC+GGG | - | chr7_1:2844169-2844188 | Msa1005200:intron | 45.0% |
| AAGAGTAGATCAGATGGAGG+AGG | - | chr7_1:2844443-2844462 | Msa1005200:CDS | 45.0% | |
| AGAGTAGATCAGATGGAGGA+GGG | - | chr7_1:2844444-2844463 | Msa1005200:CDS | 45.0% | |
| CAATCAAGCCTTAAGTGGAG+TGG | + | chr7_1:2844599-2844618 | None:intergenic | 45.0% | |
| TTCTTGGTCCCTACATATGC+TGG | + | chr7_1:2844681-2844700 | None:intergenic | 45.0% | |
| AGCATATGTAGGGACCAAGA+AGG | - | chr7_1:2844680-2844699 | Msa1005200:intron | 45.0% | |
| GCATATGTAGGGACCAAGAA+GGG | - | chr7_1:2844681-2844700 | Msa1005200:intron | 45.0% | |
| CATATGTAGGGACCAAGAAG+GGG | - | chr7_1:2844682-2844701 | Msa1005200:intron | 45.0% | |
| ACAACTTTACCGTTGCTCCA+AGG | - | chr7_1:2844805-2844824 | Msa1005200:intron | 45.0% | |
| CTTTCGGAGTGACCTTGTAA+AGG | - | chr7_1:2845346-2845365 | Msa1005200:intron | 45.0% | |
| ATCAACGCATACCAGTGAAG+TGG | - | chr7_1:2845407-2845426 | Msa1005200:intron | 45.0% | |
| CTCCAACAAAACAAGTGCCT+CGG | + | chr7_1:2845488-2845507 | None:intergenic | 45.0% | |
| ATGCAATTTACACGGCGAGT+TGG | - | chr7_1:2845648-2845667 | Msa1005200:intron | 45.0% | |
| GAAGTTGAGTGGCGAAGATT+GGG | - | chr7_1:2845693-2845712 | Msa1005200:intron | 45.0% | |
| TTGGGTTCAAGGTTGCGAAA+TGG | - | chr7_1:2845711-2845730 | Msa1005200:intron | 45.0% | |
| CGAAATGGTTCTTCGGTACT+CGG | - | chr7_1:2845726-2845745 | Msa1005200:intron | 45.0% | |
| ! | GGGTGTTTTCTCTCATGTGA+AGG | - | chr7_1:2845996-2846015 | Msa1005200:intron | 45.0% |
| GTATCCTGAAGGGGATTTGT+TGG | - | chr7_1:2846244-2846263 | Msa1005200:intron | 45.0% | |
| ATGACCAACAAATCCCCTTC+AGG | + | chr7_1:2846251-2846270 | None:intergenic | 45.0% | |
| TGGAGGCGAATCAAACCTAA+AGG | - | chr7_1:2846300-2846319 | Msa1005200:intron | 45.0% | |
| GGGTCCACACATTTGCAATT+TGG | - | chr7_1:2846597-2846616 | Msa1005200:intron | 45.0% | |
| ! | GCAATTTGGATTGGACTTGC+TGG | - | chr7_1:2846611-2846630 | Msa1005200:intron | 45.0% |
| !! | TCATGTTGTTTCCGCTCTGA+AGG | - | chr7_1:2846941-2846960 | Msa1005200:CDS | 45.0% |
| ! | GTTGATGAAATGGGGTTGGC+AGG | - | chr7_1:2842299-2842318 | Msa1005200:CDS | 50.0% |
| TGGGATCGAAAGGGCAATTG+GGG | - | chr7_1:2842371-2842390 | Msa1005200:intron | 50.0% | |
| CCTGGACCAAACTACATCCT+TGG | + | chr7_1:2842904-2842923 | None:intergenic | 50.0% | |
| CCAAGGATGTAGTTTGGTCC+AGG | - | chr7_1:2842901-2842920 | Msa1005200:intron | 50.0% | |
| !!! | GCTCGCAAGTTAGCGGATTT+TGG | + | chr7_1:2843392-2843411 | None:intergenic | 50.0% |
| AGGGTGGCATCAATTCTGGT+TGG | + | chr7_1:2843539-2843558 | None:intergenic | 50.0% | |
| CGAAAGGGTGGCATCAATTC+TGG | + | chr7_1:2843543-2843562 | None:intergenic | 50.0% | |
| !! | ACCTGGATGCAGCTCTAAGA+AGG | - | chr7_1:2844040-2844059 | Msa1005200:intron | 50.0% |
| ACCTTCTTAGAGCTGCATCC+AGG | + | chr7_1:2844044-2844063 | None:intergenic | 50.0% | |
| !! | AGTTCTGAACGGGACCTGTT+TGG | - | chr7_1:2844179-2844198 | Msa1005200:intron | 50.0% |
| TAGATCAGATGGAGGAGGGT+GGG | - | chr7_1:2844448-2844467 | Msa1005200:CDS | 50.0% | |
| ATGGCGATGGCGACTTAAGA+TGG | + | chr7_1:2845008-2845027 | None:intergenic | 50.0% | |
| GTCTCATCTCTTGCATCGCA+CGG | - | chr7_1:2845454-2845473 | Msa1005200:intron | 50.0% | |
| TCTCATCTCTTGCATCGCAC+GGG | - | chr7_1:2845455-2845474 | Msa1005200:intron | 50.0% | |
| !!! | GTCCGAGGCACTTGTTTTGT+TGG | - | chr7_1:2845483-2845502 | Msa1005200:intron | 50.0% |
| !!! | CGAGGCACTTGTTTTGTTGG+AGG | - | chr7_1:2845486-2845505 | Msa1005200:intron | 50.0% |
| ! | ATTTACACGGCGAGTTGGAG+AGG | - | chr7_1:2845653-2845672 | Msa1005200:intron | 50.0% |
| ! | TTTACACGGCGAGTTGGAGA+GGG | - | chr7_1:2845654-2845673 | Msa1005200:intron | 50.0% |
| CTCCTATGCACGAAGTTGAG+TGG | - | chr7_1:2845682-2845701 | Msa1005200:intron | 50.0% | |
| CGAAGTTGAGTGGCGAAGAT+TGG | - | chr7_1:2845692-2845711 | Msa1005200:intron | 50.0% | |
| AGTGGCGAAGATTGGGTTCA+AGG | - | chr7_1:2845700-2845719 | Msa1005200:intron | 50.0% | |
| ! | GTTAGGAGATACGCTTGGTG+TGG | - | chr7_1:2846193-2846212 | Msa1005200:intron | 50.0% |
| GGGTTGCCACACTAACCTTT+AGG | + | chr7_1:2846318-2846337 | None:intergenic | 50.0% | |
| GTTTCGGAGATAGCTACGTG+AGG | - | chr7_1:2846760-2846779 | Msa1005200:intron | 50.0% | |
| ! | GTATCACGCACTTTTGGCCT+CGG | - | chr7_1:2846866-2846885 | Msa1005200:intron | 50.0% |
| ! | TATCACGCACTTTTGGCCTC+GGG | - | chr7_1:2846867-2846886 | Msa1005200:intron | 50.0% |
| GAAGGACAGCTTCGGCAAAA+TGG | - | chr7_1:2846959-2846978 | Msa1005200:CDS | 50.0% | |
| GTAGATCAGATGGAGGAGGG+TGG | - | chr7_1:2844447-2844466 | Msa1005200:CDS | 55.0% | |
| CAAATGGCGTGACCCCTTCT+TGG | + | chr7_1:2844697-2844716 | None:intergenic | 55.0% | |
| CAAGAAGGGGTCACGCCATT+TGG | - | chr7_1:2844695-2844714 | Msa1005200:intron | 55.0% | |
| TTACGGGAGCCTTGGAGCAA+CGG | + | chr7_1:2844817-2844836 | None:intergenic | 55.0% | |
| ATCGCACGGGAAATTGTCCG+AGG | - | chr7_1:2845468-2845487 | Msa1005200:intron | 55.0% | |
| ! | TTACACGGCGAGTTGGAGAG+GGG | - | chr7_1:2845655-2845674 | Msa1005200:intron | 55.0% |
| CGCCACTCAACTTCGTGCAT+AGG | + | chr7_1:2845687-2845706 | None:intergenic | 55.0% | |
| TCGGAGATAGCTACGTGAGG+TGG | - | chr7_1:2846763-2846782 | Msa1005200:intron | 55.0% | |
| CGGAGATAGCTACGTGAGGT+GGG | - | chr7_1:2846764-2846783 | Msa1005200:intron | 55.0% | |
| AGCAGATCTGTGATCTCCCG+AGG | + | chr7_1:2846886-2846905 | None:intergenic | 55.0% | |
| !! | TCCGCTCTGAAGGACAGCTT+CGG | - | chr7_1:2846951-2846970 | Msa1005200:CDS | 55.0% |
| ! | AATGGGGTTGGCAGGGATCG+TGG | - | chr7_1:2842307-2842326 | Msa1005200:CDS | 60.0% |
| GGGCGGTGACATGCTTGATG+CGG | - | chr7_1:2844320-2844339 | Msa1005200:intron | 60.0% | |
| GAGGAGGGTGGGATCAGAAG+AGG | - | chr7_1:2844459-2844478 | Msa1005200:CDS | 60.0% | |
| GCCGAAGCTGTCCTTCAGAG+CGG | + | chr7_1:2846955-2846974 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 2841929 | 2847007 | 2841929 | ID=Msa1005200;Name=Msa1005200 |
| chr7_1 | mRNA | 2841929 | 2847007 | 2841929 | ID=Msa1005200-mRNA-1;Parent=Msa1005200;Name=Msa1005200-mRNA-1;_AED=0.74;_eAED=0.74;_QI=0|0|0|0.16|1|1|12|0|541 |
| chr7_1 | exon | 2846873 | 2847007 | 2846873 | ID=Msa1005200-mRNA-1:exon:1226;Parent=Msa1005200-mRNA-1 |
| chr7_1 | exon | 2846490 | 2846615 | 2846490 | ID=Msa1005200-mRNA-1:exon:1225;Parent=Msa1005200-mRNA-1 |
| chr7_1 | exon | 2844875 | 2844957 | 2844875 | ID=Msa1005200-mRNA-1:exon:1224;Parent=Msa1005200-mRNA-1 |
| chr7_1 | exon | 2844382 | 2844655 | 2844382 | ID=Msa1005200-mRNA-1:exon:1223;Parent=Msa1005200-mRNA-1 |
| chr7_1 | exon | 2843843 | 2843947 | 2843843 | ID=Msa1005200-mRNA-1:exon:1222;Parent=Msa1005200-mRNA-1 |
| chr7_1 | exon | 2843629 | 2843733 | 2843629 | ID=Msa1005200-mRNA-1:exon:1221;Parent=Msa1005200-mRNA-1 |
| chr7_1 | exon | 2843375 | 2843539 | 2843375 | ID=Msa1005200-mRNA-1:exon:1220;Parent=Msa1005200-mRNA-1 |
| chr7_1 | exon | 2843169 | 2843296 | 2843169 | ID=Msa1005200-mRNA-1:exon:1219;Parent=Msa1005200-mRNA-1 |
| chr7_1 | exon | 2843018 | 2843093 | 2843018 | ID=Msa1005200-mRNA-1:exon:1218;Parent=Msa1005200-mRNA-1 |
| chr7_1 | exon | 2842481 | 2842555 | 2842481 | ID=Msa1005200-mRNA-1:exon:1217;Parent=Msa1005200-mRNA-1 |
| chr7_1 | exon | 2842155 | 2842363 | 2842155 | ID=Msa1005200-mRNA-1:exon:1216;Parent=Msa1005200-mRNA-1 |
| chr7_1 | exon | 2841929 | 2842073 | 2841929 | ID=Msa1005200-mRNA-1:exon:1215;Parent=Msa1005200-mRNA-1 |
| chr7_1 | CDS | 2846873 | 2847007 | 2846873 | ID=Msa1005200-mRNA-1:cds;Parent=Msa1005200-mRNA-1 |
| chr7_1 | CDS | 2846490 | 2846615 | 2846490 | ID=Msa1005200-mRNA-1:cds;Parent=Msa1005200-mRNA-1 |
| chr7_1 | CDS | 2844875 | 2844957 | 2844875 | ID=Msa1005200-mRNA-1:cds;Parent=Msa1005200-mRNA-1 |
| chr7_1 | CDS | 2844382 | 2844655 | 2844382 | ID=Msa1005200-mRNA-1:cds;Parent=Msa1005200-mRNA-1 |
| chr7_1 | CDS | 2843843 | 2843947 | 2843843 | ID=Msa1005200-mRNA-1:cds;Parent=Msa1005200-mRNA-1 |
| chr7_1 | CDS | 2843629 | 2843733 | 2843629 | ID=Msa1005200-mRNA-1:cds;Parent=Msa1005200-mRNA-1 |
| chr7_1 | CDS | 2843375 | 2843539 | 2843375 | ID=Msa1005200-mRNA-1:cds;Parent=Msa1005200-mRNA-1 |
| chr7_1 | CDS | 2843169 | 2843296 | 2843169 | ID=Msa1005200-mRNA-1:cds;Parent=Msa1005200-mRNA-1 |
| chr7_1 | CDS | 2843018 | 2843093 | 2843018 | ID=Msa1005200-mRNA-1:cds;Parent=Msa1005200-mRNA-1 |
| chr7_1 | CDS | 2842481 | 2842555 | 2842481 | ID=Msa1005200-mRNA-1:cds;Parent=Msa1005200-mRNA-1 |
| chr7_1 | CDS | 2842155 | 2842363 | 2842155 | ID=Msa1005200-mRNA-1:cds;Parent=Msa1005200-mRNA-1 |
| chr7_1 | CDS | 2841929 | 2842073 | 2841929 | ID=Msa1005200-mRNA-1:cds;Parent=Msa1005200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
