AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1457670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457670 MtrunA17_Chr3g0145491 98.062 258 5 0 1 258 1 258 0.0 514
Msa1457670 MtrunA17_Chr4g0038491 73.705 251 61 3 1 250 1 247 1.17e-118 339
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457670 AT2G16595.1 59.914 232 86 4 19 249 17 242 9.35e-92 271
Msa1457670 AT2G21160.1 60.417 240 88 3 23 258 20 256 2.38e-84 253
Msa1457670 AT2G21160.2 60.479 167 59 3 23 185 20 183 4.25e-66 204

Find 102 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACATTTCGCAATATTCTT+AGG 0.152346 tig0039078:+13464 None:intergenic
TTTGAATGTTGTTGCAATTA+AGG 0.192749 tig0039078:-13187 Msa1457670:CDS
GAAATTACTGCTACTACTTC+TGG 0.218094 tig0039078:-14679 None:intergenic
ATTAGCAAGGTTGAAAATTT+AGG 0.246743 tig0039078:-11098 Msa1457670:three_prime_UTR
TCGATTAGGGTTATTGTAAA+TGG 0.247091 tig0039078:+14443 None:intergenic
TTGCTGACAGAAAATATATA+TGG 0.249255 tig0039078:+11929 None:intergenic
CTACTTGGGCTATGGATTAA+TGG 0.301378 tig0039078:-11630 Msa1457670:CDS
TGATGTGTGTGTCGTCGATT+AGG 0.302311 tig0039078:+14429 None:intergenic
ATCGCCTCCCCTTTCCTTCA+AGG 0.306997 tig0039078:-14340 Msa1457670:intron
TTCTGTCAGCAAGTTCTTGC+AGG 0.320879 tig0039078:-11918 Msa1457670:intron
GTGCAATTCCAAGAGTAAAA+AGG 0.335460 tig0039078:+11661 None:intergenic
ACAGCGATGGTGTCAATTCC+TGG 0.351993 tig0039078:+13491 None:intergenic
TGTTCAAAACCTTACTGTTC+AGG 0.353087 tig0039078:-13130 Msa1457670:intron
TACCAAAACACTTTCTATAA+TGG 0.355170 tig0039078:-11735 Msa1457670:CDS
TTCTTATCCTACTTGGGCTA+TGG 0.361313 tig0039078:-11638 Msa1457670:CDS
TTATCCAAGAAAATACTAAC+AGG 0.370456 tig0039078:-10979 Msa1457670:three_prime_UTR
TGCCATTATAGAAAGTGTTT+TGG 0.377178 tig0039078:+11733 None:intergenic
TACCATATAAGAGAGATTAA+TGG 0.379591 tig0039078:+10853 None:intergenic
TCAAATACATAACCTGTCTA+AGG 0.380877 tig0039078:-11607 Msa1457670:intron
AATTGCAACAACATTCAAAC+TGG 0.382031 tig0039078:+13191 None:intergenic
TTGCTTCCTCAGTCTGTCTC+TGG 0.400520 tig0039078:-14477 Msa1457670:five_prime_UTR
CTCCGTGCCATCTTCAGTTC+AGG 0.401803 tig0039078:-11960 Msa1457670:CDS
ATTGCACTTCTTATCCTACT+TGG 0.405932 tig0039078:-11645 Msa1457670:CDS
TACATTTCGCAATATTCTTA+GGG 0.406141 tig0039078:+13465 None:intergenic
TGTTCTTCTTGCTAGTTGCT+AGG 0.413568 tig0039078:-13625 Msa1457670:intron
ACTTGTTGATGAGCGCCATA+TGG 0.413586 tig0039078:+14392 None:intergenic
CCTGGACCATTTGATCTTGT+GGG 0.422904 tig0039078:-11789 Msa1457670:CDS
CTTAGTCCCAACTTCAACCT+TGG 0.428972 tig0039078:+11469 None:intergenic
TAAGTAGAACAAAAGGAAGT+AGG 0.430013 tig0039078:-14653 Msa1457670:five_prime_UTR
TTTATTTGATGTAGTGGTAA+AGG 0.436615 tig0039078:-13364 Msa1457670:intron
AGATCTTCCAAGGTTGAAGT+TGG 0.438581 tig0039078:-11476 Msa1457670:CDS
GCCTGGACCATTTGATCTTG+TGG 0.445173 tig0039078:-11790 Msa1457670:CDS
TTCAATGGATGAATGGCTTC+AGG 0.447599 tig0039078:-11435 Msa1457670:intron
GATGTGTGTGTCGTCGATTA+GGG 0.448493 tig0039078:+14430 None:intergenic
GGGACCTTCCCTTCTGCCCC+AGG 0.448790 tig0039078:-13509 Msa1457670:CDS
CTAGACTAGACTGACCTTGA+AGG 0.451490 tig0039078:+14326 None:intergenic
TAAGACTACAGATGCTTCAA+TGG 0.461758 tig0039078:-11450 Msa1457670:CDS
AACATTGCATTACCTTAGAC+AGG 0.473431 tig0039078:+11595 None:intergenic
ACCATTGAAGTTGTTGAGCC+TGG 0.474828 tig0039078:-11711 Msa1457670:CDS
TAAGAGAGATTAATGGCGAC+AGG 0.474982 tig0039078:+10860 None:intergenic
GATCTTCCAAGGTTGAAGTT+GGG 0.475146 tig0039078:-11475 Msa1457670:CDS
TGCTGACAGAAAATATATAT+GGG 0.475416 tig0039078:+11930 None:intergenic
CAGATGCTTCAATGGATGAA+TGG 0.477366 tig0039078:-11442 Msa1457670:CDS
AAATTACTGCTACTACTTCT+GGG 0.478522 tig0039078:-14678 None:intergenic
GGGAGGCGATGAGGAAGAGA+AGG 0.478728 tig0039078:+14353 None:intergenic
ACAGAATTCTGTAATAGAAT+AGG 0.479946 tig0039078:-11132 Msa1457670:three_prime_UTR
TTATTTGATGTAGTGGTAAA+GGG 0.480002 tig0039078:-13363 Msa1457670:intron
TTGCACTTCTTATCCTACTT+GGG 0.486809 tig0039078:-11644 Msa1457670:CDS
GTGAATGACATCGGCATTGT+TGG 0.490588 tig0039078:-13566 Msa1457670:CDS
GATGAAGCTGTGGAGAATAC+TGG 0.499870 tig0039078:-13593 Msa1457670:CDS
TAGACTGACCTTGAAGGAAA+GGG 0.501674 tig0039078:+14332 None:intergenic
CTGGGTATAAGTAGAACAAA+AGG 0.503283 tig0039078:-14660 Msa1457670:five_prime_UTR
CAGCGATGGTGTCAATTCCT+GGG 0.503598 tig0039078:+13492 None:intergenic
TTAAGATACAACACAAAGAC+TGG 0.514433 tig0039078:+11066 None:intergenic
GGCGATGAGGAAGAGAAGGA+AGG 0.515372 tig0039078:+14357 None:intergenic
GTGTCAATTCCTGGGGCAGA+AGG 0.517036 tig0039078:+13500 None:intergenic
ATGGTGCCCACAAGATCAAA+TGG 0.518920 tig0039078:+11783 None:intergenic
GGTTGGAGAGAGAATTAGCA+AGG 0.524386 tig0039078:-11111 Msa1457670:three_prime_UTR
CAATTTCTACCTGAACAGTA+AGG 0.525707 tig0039078:+13121 None:intergenic
GAAGAGGCAGAGCTACTTGT+CGG 0.527005 tig0039078:-13336 Msa1457670:CDS
AAACCCTAGCTAGACCCATA+TGG 0.530084 tig0039078:-14407 Msa1457670:exon
AGTGGTAAAGGGTGGTGAAG+AGG 0.534718 tig0039078:-13352 Msa1457670:CDS
CTAGACTGACCTTGAAGGAA+AGG 0.535388 tig0039078:+14331 None:intergenic
CTTGTTGATGAGCGCCATAT+GGG 0.538244 tig0039078:+14393 None:intergenic
ACCAGGCTCAACAACTTCAA+TGG 0.539719 tig0039078:+11710 None:intergenic
CCCACAAGATCAAATGGTCC+AGG 0.542064 tig0039078:+11789 None:intergenic
AGCGCCATATGGGTCTAGCT+AGG 0.547903 tig0039078:+14403 None:intergenic
AAAGTAGCCTGAACTGAAGA+TGG 0.549379 tig0039078:+11953 None:intergenic
ACAAGAAGACGATGATCGTA+TGG 0.565759 tig0039078:+13150 None:intergenic
AATTCCTGGGGCAGAAGGGA+AGG 0.572912 tig0039078:+13505 None:intergenic
AGAATTCTGTACTCCGTGGA+AGG 0.575537 tig0039078:+11145 None:intergenic
GATGCTCAAGACTTTGCTGA+TGG 0.576315 tig0039078:-13530 Msa1457670:CDS
GAATTCTGTACTCCGTGGAA+GGG 0.578917 tig0039078:+11146 None:intergenic
ATAGTAACATTGAAGTCAAG+TGG 0.581218 tig0039078:-14611 Msa1457670:five_prime_UTR
AATTCTGTAATAGAATAGGT+TGG 0.582113 tig0039078:-11128 Msa1457670:three_prime_UTR
ATGCTCAAGACTTTGCTGAT+GGG 0.587042 tig0039078:-13529 Msa1457670:CDS
TCATACAACTTTGAACCGCA+TGG 0.594719 tig0039078:-10939 Msa1457670:three_prime_UTR
GCGCCATATGGGTCTAGCTA+GGG 0.595420 tig0039078:+14404 None:intergenic
CATTAATCCATAGCCCAAGT+AGG 0.597505 tig0039078:+11631 None:intergenic
TGAGGAAGCAACGTGTGACT+CGG 0.601583 tig0039078:+14489 None:intergenic
ATTGATCAAAACGACGACAT+TGG 0.604383 tig0039078:-14578 Msa1457670:five_prime_UTR
AGCCTGAACTGAAGATGGCA+CGG 0.612528 tig0039078:+11958 None:intergenic
TGTCAATTCCTGGGGCAGAA+GGG 0.617861 tig0039078:+13501 None:intergenic
GAAGGAAAGGGGAGGCGATG+AGG 0.618127 tig0039078:+14344 None:intergenic
GAAGACGATGATCGTATGGA+AGG 0.621122 tig0039078:+13154 None:intergenic
AGACTGACCTTGAAGGAAAG+GGG 0.632169 tig0039078:+14333 None:intergenic
AGCCACACAAGACCCTTCCA+CGG 0.636372 tig0039078:-11158 Msa1457670:three_prime_UTR
ATTCTTAGGGAACACAGCGA+TGG 0.640325 tig0039078:+13478 None:intergenic
TAAAGCTCGACTCAGTGCAA+AGG 0.644737 tig0039078:+10999 None:intergenic
TTGGTCTATCTCGTATACAA+TGG 0.646480 tig0039078:+11764 None:intergenic
CTCCGTGGAAGGGTCTTGTG+TGG 0.647246 tig0039078:+11156 None:intergenic
GTGTCAGTCAGATGAAGCTG+TGG 0.648091 tig0039078:-13603 Msa1457670:CDS
TCCATACTGAATAAAACACC+AGG 0.656320 tig0039078:+11693 None:intergenic
AGCGATGGTGTCAATTCCTG+GGG 0.656423 tig0039078:+13493 None:intergenic
ACTGGTGAAGTGAATGACAT+CGG 0.672577 tig0039078:-13575 Msa1457670:CDS
TTTGATGTAGTGGTAAAGGG+TGG 0.674392 tig0039078:-13360 Msa1457670:intron
TTACAGAATTCTGTACTCCG+TGG 0.684191 tig0039078:+11141 None:intergenic
AAGAGAGATTAATGGCGACA+GGG 0.688273 tig0039078:+10861 None:intergenic
TTCAAACCAGAGACAGACTG+AGG 0.698690 tig0039078:+14471 None:intergenic
TATCCAAGAAAATACTAACA+GGG 0.701098 tig0039078:-10978 Msa1457670:three_prime_UTR
CTGACCTTGAAGGAAAGGGG+AGG 0.710204 tig0039078:+14336 None:intergenic
CATAATCTGACAAAACCATG+CGG 0.760856 tig0039078:+10924 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAATAGAGTAAAA+AGG + tig0039078:11291-11310 None:intergenic 10.0%
!!! TGACTTTTTTTTTTTTTTTT+TGG - tig0039078:11374-11393 Msa1457670:intron 10.0%
!! GTAAATAAATAGATTTAATT+TGG + tig0039078:12447-12466 None:intergenic 10.0%
!!! ATTTTGATTTTGATTAAATT+TGG - tig0039078:14643-14662 Msa1457670:five_prime_UTR 10.0%
!!! AATAGTATATTGATTATTAC+AGG + tig0039078:12547-12566 None:intergenic 15.0%
!! AAAATAAAAACTAAAGAAAC+AGG - tig0039078:13035-13054 Msa1457670:intron 15.0%
!! AAATAAAAACTAAAGAAACA+GGG - tig0039078:13036-13055 Msa1457670:intron 15.0%
!!! TTTTCTATTTTTTTGGAGTA+GGG - tig0039078:11349-11368 Msa1457670:intron 20.0%
!! TTTCTATTGCTTTCAATTTA+CGG - tig0039078:11461-11480 Msa1457670:CDS 20.0%
!!! TTTCTAGTTGACTTAATAAA+TGG + tig0039078:11674-11693 None:intergenic 20.0%
!!! ATTTAATGGATATGAAGAAA+AGG + tig0039078:11824-11843 None:intergenic 20.0%
!! AGATCTTTCTATATAAGATA+AGG - tig0039078:12089-12108 Msa1457670:intron 20.0%
!!! ATAGATTTAATTTGGAGATT+TGG + tig0039078:12439-12458 None:intergenic 20.0%
!!! ACTAAAGTATTTGCTATATA+TGG - tig0039078:12622-12641 Msa1457670:intron 20.0%
!!! CTAAAGTATTTGCTATATAT+GGG - tig0039078:12623-12642 Msa1457670:intron 20.0%
!!! CTTATTTTCTAATCAAATCA+AGG - tig0039078:12715-12734 Msa1457670:intron 20.0%
!!! ACAATATATTCTTTTAAGAC+TGG - tig0039078:12908-12927 Msa1457670:intron 20.0%
!!! CAATATATTCTTTTAAGACT+GGG - tig0039078:12909-12928 Msa1457670:intron 20.0%
!! AATAAAAACTAAAGAAACAG+GGG - tig0039078:13037-13056 Msa1457670:intron 20.0%
!! TTATACATGTGTGTTAAAAT+GGG - tig0039078:13167-13186 Msa1457670:CDS 20.0%
!! CAAACTTATAGTTAATATGT+TGG - tig0039078:13372-13391 Msa1457670:intron 20.0%
!!! GTAATACTTTTTTTTGTGTA+AGG + tig0039078:13508-13527 None:intergenic 20.0%
!! TTGACAAATCAATAATGTAA+AGG + tig0039078:14248-14267 None:intergenic 20.0%
!!! CAGATTATGTTAATTTTATC+TGG - tig0039078:14620-14639 Msa1457670:five_prime_UTR 20.0%
! AAGAAAGAAAATGATGATAG+AGG + tig0039078:11249-11268 None:intergenic 25.0%
!!! GTTCTGCTTTTCTATTTTTT+TGG - tig0039078:11342-11361 Msa1457670:intron 25.0%
!!! CTTTTCTATTTTTTTGGAGT+AGG - tig0039078:11348-11367 Msa1457670:intron 25.0%
!!! TTTCTATTTTTTTGGAGTAG+GGG - tig0039078:11350-11369 Msa1457670:intron 25.0%
! ACAAAACTAATCAACTACAA+AGG + tig0039078:11785-11804 None:intergenic 25.0%
! TACATTTCGCAATATTCTTA+GGG + tig0039078:12068-12087 None:intergenic 25.0%
! TTACATTTCGCAATATTCTT+AGG + tig0039078:12069-12088 None:intergenic 25.0%
! AAATTAACACAAGATTGTCA+GGG + tig0039078:12139-12158 None:intergenic 25.0%
! AAAATTAACACAAGATTGTC+AGG + tig0039078:12140-12159 None:intergenic 25.0%
!!! TTGTTGTTTATTTGATGTAG+TGG - tig0039078:12160-12179 Msa1457670:intron 25.0%
! TTTATTTGATGTAGTGGTAA+AGG - tig0039078:12166-12185 Msa1457670:intron 25.0%
! TTATTTGATGTAGTGGTAAA+GGG - tig0039078:12167-12186 Msa1457670:intron 25.0%
! TTTGAATGTTGTTGCAATTA+AGG - tig0039078:12343-12362 Msa1457670:intron 25.0%
! TGTTTCAATCAAAGTTATCA+TGG + tig0039078:12495-12514 None:intergenic 25.0%
!!! TTAATCTCTGAAATGATTTG+TGG - tig0039078:12571-12590 Msa1457670:intron 25.0%
! TGTGCATATCTTTGTATAAA+TGG + tig0039078:12891-12910 None:intergenic 25.0%
! ATGACAGTAAAATATCATCA+AGG - tig0039078:12999-13018 Msa1457670:intron 25.0%
! TGACAGTAAAATATCATCAA+GGG - tig0039078:13000-13019 Msa1457670:intron 25.0%
!!! CATTTTAACACACATGTATA+AGG + tig0039078:13168-13187 None:intergenic 25.0%
! CTTATACATGTGTGTTAAAA+TGG - tig0039078:13166-13185 Msa1457670:CDS 25.0%
! TATAAGTTTGACAGAGTTAT+TGG + tig0039078:13362-13381 None:intergenic 25.0%
! TGCTGACAGAAAATATATAT+GGG + tig0039078:13603-13622 None:intergenic 25.0%
! TTGCTGACAGAAAATATATA+TGG + tig0039078:13604-13623 None:intergenic 25.0%
!!! TTATAGAAAGTGTTTTGGTA+TGG + tig0039078:13795-13814 None:intergenic 25.0%
! TACCAAAACACTTTCTATAA+TGG - tig0039078:13795-13814 Msa1457670:intron 25.0%
! TACACAAATCAGTATGAAAA+GGG + tig0039078:14208-14227 None:intergenic 25.0%
! ATACACAAATCAGTATGAAA+AGG + tig0039078:14209-14228 None:intergenic 25.0%
! ACAGAATTCTGTAATAGAAT+AGG - tig0039078:14398-14417 Msa1457670:exon 25.0%
! AATTCTGTAATAGAATAGGT+TGG - tig0039078:14402-14421 Msa1457670:exon 25.0%
! ATTAGCAAGGTTGAAAATTT+AGG - tig0039078:14432-14451 Msa1457670:five_prime_UTR 25.0%
! TTATCCAAGAAAATACTAAC+AGG - tig0039078:14551-14570 Msa1457670:five_prime_UTR 25.0%
! TATCCAAGAAAATACTAACA+GGG - tig0039078:14552-14571 Msa1457670:five_prime_UTR 25.0%
TAAGTAGAACAAAAGGAAGT+AGG - tig0039078:10877-10896 Msa1457670:three_prime_UTR 30.0%
ATAGTAACATTGAAGTCAAG+TGG - tig0039078:10919-10938 Msa1457670:three_prime_UTR 30.0%
TCGATTAGGGTTATTGTAAA+TGG + tig0039078:11090-11109 None:intergenic 30.0%
ATGATGATAGAGGAAGAAAA+GGG + tig0039078:11239-11258 None:intergenic 30.0%
AATGATGATAGAGGAAGAAA+AGG + tig0039078:11240-11259 None:intergenic 30.0%
TATCAGTTAGTTATGATGCA+TGG - tig0039078:11492-11511 Msa1457670:intron 30.0%
! ATTGATTTCCACATCAGTTA+AGG + tig0039078:11599-11618 None:intergenic 30.0%
TGTAATCCAAATACTGGAAA+AGG + tig0039078:11706-11725 None:intergenic 30.0%
AATGGATATGAAGAAAAGGA+TGG + tig0039078:11820-11839 None:intergenic 30.0%
! GTGAGAAGTGTGTAATTTAA+TGG + tig0039078:11838-11857 None:intergenic 30.0%
AATTAACACAAGATTGTCAG+GGG + tig0039078:12138-12157 None:intergenic 30.0%
TGTCACAAGACACAAATAAA+AGG + tig0039078:12273-12292 None:intergenic 30.0%
!! TAACACTCGATTTTGTTGTA+TGG - tig0039078:12299-12318 Msa1457670:intron 30.0%
TTGTTGTATGGATCAATTTC+AGG - tig0039078:12311-12330 Msa1457670:intron 30.0%
TGTTGTATGGATCAATTTCA+GGG - tig0039078:12312-12331 Msa1457670:intron 30.0%
AATTGCAACAACATTCAAAC+TGG + tig0039078:12342-12361 None:intergenic 30.0%
TATAGCAAATACTTTAGTGC+AGG + tig0039078:12620-12639 None:intergenic 30.0%
TAATTGCTTTACCGTATGTT+TGG - tig0039078:12664-12683 Msa1457670:intron 30.0%
AAATCTTCCATCCAAACATA+CGG + tig0039078:12678-12697 None:intergenic 30.0%
! TATGTTTGGATGGAAGATTT+TGG - tig0039078:12678-12697 Msa1457670:intron 30.0%
! AATGGAAGAGTATGTTCATA+TGG + tig0039078:12873-12892 None:intergenic 30.0%
GGAATCTGAATGAAATAAGA+GGG + tig0039078:13226-13245 None:intergenic 30.0%
ATTCCCTATTCCATGTTATA+TGG - tig0039078:13241-13260 Msa1457670:intron 30.0%
GTACCATATAACATGGAATA+GGG + tig0039078:13247-13266 None:intergenic 30.0%
AGTACCATATAACATGGAAT+AGG + tig0039078:13248-13267 None:intergenic 30.0%
! AATCAGAGTACCATATAACA+TGG + tig0039078:13254-13273 None:intergenic 30.0%
TATGTATGTACCAAATGGTT+GGG + tig0039078:13295-13314 None:intergenic 30.0%
AGATCTATGTATGTACCAAA+TGG + tig0039078:13300-13319 None:intergenic 30.0%
ATAGATCTCTAAGTTCATCT+GGG - tig0039078:13312-13331 Msa1457670:intron 30.0%
! GTGTTGTGTTATAATTTTGC+AGG - tig0039078:13534-13553 Msa1457670:CDS 30.0%
! ATTTTGCAGGTTTTCAACAA+TGG - tig0039078:13547-13566 Msa1457670:CDS 30.0%
AGGCATGATAAATATAGAAG+GGG + tig0039078:13698-13717 None:intergenic 30.0%
CAGGCATGATAAATATAGAA+GGG + tig0039078:13699-13718 None:intergenic 30.0%
TCAGGCATGATAAATATAGA+AGG + tig0039078:13700-13719 None:intergenic 30.0%
!!! TGCCATTATAGAAAGTGTTT+TGG + tig0039078:13800-13819 None:intergenic 30.0%
! TCTGTTTTCCTTTTTACTCT+TGG - tig0039078:13861-13880 Msa1457670:intron 30.0%
TCAAATACATAACCTGTCTA+AGG - tig0039078:13923-13942 Msa1457670:intron 30.0%
AATAATACTCACGTGGTAAA+TGG + tig0039078:13983-14002 None:intergenic 30.0%
ATATGCAAATAATACTCACG+TGG + tig0039078:13990-14009 None:intergenic 30.0%
GAAAACAAAAAGATCTTCCA+AGG - tig0039078:14044-14063 Msa1457670:intron 30.0%
ACACAAATCAGTATGAAAAG+GGG + tig0039078:14207-14226 None:intergenic 30.0%
GGATATCAAAATACAAGGTT+AGG + tig0039078:14280-14299 None:intergenic 30.0%
!!! AACCTTGTATTTTGATATCC+AGG - tig0039078:14280-14299 Msa1457670:intron 30.0%
!!! ACCTTGTATTTTGATATCCA+GGG - tig0039078:14281-14300 Msa1457670:intron 30.0%
TTAAGATACAACACAAAGAC+TGG + tig0039078:14467-14486 None:intergenic 30.0%
CTGGGTATAAGTAGAACAAA+AGG - tig0039078:10870-10889 Msa1457670:three_prime_UTR 35.0%
ATTGATCAAAACGACGACAT+TGG - tig0039078:10952-10971 Msa1457670:three_prime_UTR 35.0%
!!! TTCTTCTTGTCGTTTTCTTC+AGG + tig0039078:10988-11007 None:intergenic 35.0%
TGATGATAGAGGAAGAAAAG+GGG + tig0039078:11238-11257 None:intergenic 35.0%
AGTTAGTTATGATGCATGGA+TGG - tig0039078:11496-11515 Msa1457670:intron 35.0%
TGAGCATTAAAGTTGTAGCA+AGG + tig0039078:11637-11656 None:intergenic 35.0%
! AAATACTGGAAAAGGTGTGA+GGG + tig0039078:11698-11717 None:intergenic 35.0%
! AACGTATGATCTGGAATCAA+CGG - tig0039078:11752-11771 Msa1457670:CDS 35.0%
ACAACAAAATCGAGTGTTAG+AGG + tig0039078:12298-12317 None:intergenic 35.0%
TGTTCAAAACCTTACTGTTC+AGG - tig0039078:12400-12419 Msa1457670:intron 35.0%
CAATTTCTACCTGAACAGTA+AGG + tig0039078:12412-12431 None:intergenic 35.0%
CTTACTGTTCAGGTAGAAAT+TGG - tig0039078:12410-12429 Msa1457670:intron 35.0%
! GAAGAGTATGTTCATATGGA+GGG + tig0039078:12869-12888 None:intergenic 35.0%
!!! CAAGGTTTTGCTGTTTTAGT+AGG - tig0039078:12942-12961 Msa1457670:intron 35.0%
ATATTGACAAAGTATGCACC+AGG - tig0039078:12975-12994 Msa1457670:intron 35.0%
TATTGACAAAGTATGCACCA+GGG - tig0039078:12976-12995 Msa1457670:intron 35.0%
! TGATATTTTACTGTCATCCC+TGG + tig0039078:12996-13015 None:intergenic 35.0%
TGAATAGCAACTCAAGGAAT+TGG + tig0039078:13086-13105 None:intergenic 35.0%
! AGTTGCTATTCACCATCTAT+GGG - tig0039078:13094-13113 Msa1457670:intron 35.0%
TAAGGATTGTTAGATGTACG+AGG + tig0039078:13150-13169 None:intergenic 35.0%
TGTGTGTTAAAATGGGTATG+AGG - tig0039078:13174-13193 Msa1457670:CDS 35.0%
TCTGAATGAAATAAGAGGGA+AGG + tig0039078:13222-13241 None:intergenic 35.0%
GGGAATCTGAATGAAATAAG+AGG + tig0039078:13227-13246 None:intergenic 35.0%
CTATGTATGTACCAAATGGT+TGG + tig0039078:13296-13315 None:intergenic 35.0%
CATAGATCTCTAAGTTCATC+TGG - tig0039078:13311-13330 Msa1457670:intron 35.0%
!! CTTGCTTTTGCTAGTTCTTT+TGG - tig0039078:13400-13419 Msa1457670:intron 35.0%
TTGGATGAATTAGTCGATTG+TGG - tig0039078:13419-13438 Msa1457670:intron 35.0%
TTGGTCTATCTCGTATACAA+TGG + tig0039078:13769-13788 None:intergenic 35.0%
!!! AAGTGTTTTGGTATGGATGT+TGG + tig0039078:13788-13807 None:intergenic 35.0%
TCCATACTGAATAAAACACC+AGG + tig0039078:13840-13859 None:intergenic 35.0%
GTGCAATTCCAAGAGTAAAA+AGG + tig0039078:13872-13891 None:intergenic 35.0%
ATTGCACTTCTTATCCTACT+TGG - tig0039078:13885-13904 Msa1457670:intron 35.0%
TTGCACTTCTTATCCTACTT+GGG - tig0039078:13886-13905 Msa1457670:intron 35.0%
AACATTGCATTACCTTAGAC+AGG + tig0039078:13938-13957 None:intergenic 35.0%
TAAGACTACAGATGCTTCAA+TGG - tig0039078:14080-14099 Msa1457670:intron 35.0%
ACAAATCAGTATGAAAAGGG+GGG + tig0039078:14205-14224 None:intergenic 35.0%
CACAAATCAGTATGAAAAGG+GGG + tig0039078:14206-14225 None:intergenic 35.0%
TCCCTGGATATCAAAATACA+AGG + tig0039078:14285-14304 None:intergenic 35.0%
! GATCCCTGTTAGTATTTTCT+TGG + tig0039078:14558-14577 None:intergenic 35.0%
CATAATCTGACAAAACCATG+CGG + tig0039078:14609-14628 None:intergenic 35.0%
TAGACTGACCTTGAAGGAAA+GGG + tig0039078:11201-11220 None:intergenic 40.0%
TGTGCAATCCTTAACTGATG+TGG - tig0039078:11588-11607 Msa1457670:intron 40.0%
! AATACTGGAAAAGGTGTGAG+GGG + tig0039078:11697-11716 None:intergenic 40.0%
! CAAATACTGGAAAAGGTGTG+AGG + tig0039078:11699-11718 None:intergenic 40.0%
! CTCACACCTTTTCCAGTATT+TGG - tig0039078:11697-11716 Msa1457670:CDS 40.0%
GCAGTGTGTAATCCAAATAC+TGG + tig0039078:11712-11731 None:intergenic 40.0%
ACTCGTCTTAACGTATGATC+TGG - tig0039078:11743-11762 Msa1457670:CDS 40.0%
TGTTCTTCTTGCTAGTTGCT+AGG - tig0039078:11905-11924 Msa1457670:intron 40.0%
ACTGGTGAAGTGAATGACAT+CGG - tig0039078:11955-11974 Msa1457670:CDS 40.0%
ATGCTCAAGACTTTGCTGAT+GGG - tig0039078:12001-12020 Msa1457670:intron 40.0%
TTTGATGTAGTGGTAAAGGG+TGG - tig0039078:12170-12189 Msa1457670:intron 40.0%
ACAAGAAGACGATGATCGTA+TGG + tig0039078:12383-12402 None:intergenic 40.0%
TGCTTTACCGTATGTTTGGA+TGG - tig0039078:12668-12687 Msa1457670:intron 40.0%
! GTTTGGATGGAAGATTTTGG+AGG - tig0039078:12681-12700 Msa1457670:intron 40.0%
GGAGAGCTAAGTTCATATCA+TGG + tig0039078:12842-12861 None:intergenic 40.0%
TATGTTCATATGGAGGGTTC+TGG + tig0039078:12863-12882 None:intergenic 40.0%
! GGAAGAGTATGTTCATATGG+AGG + tig0039078:12870-12889 None:intergenic 40.0%
AGATGGTGAATAGCAACTCA+AGG + tig0039078:13092-13111 None:intergenic 40.0%
! GAGTTGCTATTCACCATCTA+TGG - tig0039078:13093-13112 Msa1457670:intron 40.0%
AAAGTAGCCTGAACTGAAGA+TGG + tig0039078:13580-13599 None:intergenic 40.0%
!! CATCAGCTCTGGAAAAAGTA+AGG + tig0039078:13643-13662 None:intergenic 40.0%
ATGCTTCAAATGTCTGCATG+AGG - tig0039078:13660-13679 Msa1457670:intron 40.0%
CACAGCAAAAGAAAATGGTC+AGG + tig0039078:13718-13737 None:intergenic 40.0%
!! GCCTGGTGTTTTATTCAGTA+TGG - tig0039078:13836-13855 Msa1457670:intron 40.0%
TTCTTATCCTACTTGGGCTA+TGG - tig0039078:13892-13911 Msa1457670:intron 40.0%
CATTAATCCATAGCCCAAGT+AGG + tig0039078:13902-13921 None:intergenic 40.0%
! CTACTTGGGCTATGGATTAA+TGG - tig0039078:13900-13919 Msa1457670:intron 40.0%
AGATCTTCCAAGGTTGAAGT+TGG - tig0039078:14054-14073 Msa1457670:intron 40.0%
GATCTTCCAAGGTTGAAGTT+GGG - tig0039078:14055-14074 Msa1457670:intron 40.0%
CAGATGCTTCAATGGATGAA+TGG - tig0039078:14088-14107 Msa1457670:intron 40.0%
TTCAATGGATGAATGGCTTC+AGG - tig0039078:14095-14114 Msa1457670:intron 40.0%
TTACAGAATTCTGTACTCCG+TGG + tig0039078:14392-14411 None:intergenic 40.0%
TCATACAACTTTGAACCGCA+TGG - tig0039078:14591-14610 Msa1457670:five_prime_UTR 40.0%
AAGAGAGATTAATGGCGACA+GGG + tig0039078:14672-14691 None:intergenic 40.0%
TAAGAGAGATTAATGGCGAC+AGG + tig0039078:14673-14692 None:intergenic 40.0%
TTCAAACCAGAGACAGACTG+AGG + tig0039078:11062-11081 None:intergenic 45.0%
! GATGTGTGTGTCGTCGATTA+GGG + tig0039078:11103-11122 None:intergenic 45.0%
! TGATGTGTGTGTCGTCGATT+AGG + tig0039078:11104-11123 None:intergenic 45.0%
AAACCCTAGCTAGACCCATA+TGG - tig0039078:11123-11142 Msa1457670:three_prime_UTR 45.0%
! CTTGTTGATGAGCGCCATAT+GGG + tig0039078:11140-11159 None:intergenic 45.0%
! ACTTGTTGATGAGCGCCATA+TGG + tig0039078:11141-11160 None:intergenic 45.0%
AGACTGACCTTGAAGGAAAG+GGG + tig0039078:11200-11219 None:intergenic 45.0%
CTAGACTGACCTTGAAGGAA+AGG + tig0039078:11202-11221 None:intergenic 45.0%
CTAGACTAGACTGACCTTGA+AGG + tig0039078:11207-11226 None:intergenic 45.0%
GATGAAGCTGTGGAGAATAC+TGG - tig0039078:11937-11956 Msa1457670:CDS 45.0%
GTGAATGACATCGGCATTGT+TGG - tig0039078:11964-11983 Msa1457670:CDS 45.0%
GATGCTCAAGACTTTGCTGA+TGG - tig0039078:12000-12019 Msa1457670:intron 45.0%
ATTCTTAGGGAACACAGCGA+TGG + tig0039078:12055-12074 None:intergenic 45.0%
CTTGTCGGTCTGAAAAACGA+TGG - tig0039078:12209-12228 Msa1457670:intron 45.0%
GAAGACGATGATCGTATGGA+AGG + tig0039078:12379-12398 None:intergenic 45.0%
!! TGGAAGATTTTGGAGGAGAG+AGG - tig0039078:12688-12707 Msa1457670:intron 45.0%
!! AAGATTTTGGAGGAGAGAGG+AGG - tig0039078:12691-12710 Msa1457670:intron 45.0%
AACTTTGAATGCAGCAGGGT+TGG - tig0039078:13060-13079 Msa1457670:intron 45.0%
TATTCACCATCTATGGGCAC+AGG - tig0039078:13100-13119 Msa1457670:intron 45.0%
AAACATCCTGTGCCCATAGA+TGG + tig0039078:13109-13128 None:intergenic 45.0%
GGGTATGAGGATGATTCTCT+TGG - tig0039078:13187-13206 Msa1457670:CDS 45.0%
TTCGATGATGCCCAACCATT+TGG - tig0039078:13282-13301 Msa1457670:intron 45.0%
TTCTGTCAGCAAGTTCTTGC+AGG - tig0039078:13612-13631 Msa1457670:CDS 45.0%
! GACATTTGAAGCATCAGCTC+TGG + tig0039078:13654-13673 None:intergenic 45.0%
GGCTGCACAGCAAAAGAAAA+TGG + tig0039078:13723-13742 None:intergenic 45.0%
!! TTTTCTTTTGCTGTGCAGCC+TGG - tig0039078:13723-13742 Msa1457670:intron 45.0%
CCTGGACCATTTGATCTTGT+GGG - tig0039078:13741-13760 Msa1457670:intron 45.0%
ATGGTGCCCACAAGATCAAA+TGG + tig0039078:13750-13769 None:intergenic 45.0%
ACCATTGAAGTTGTTGAGCC+TGG - tig0039078:13819-13838 Msa1457670:intron 45.0%
ACCAGGCTCAACAACTTCAA+TGG + tig0039078:13823-13842 None:intergenic 45.0%
CTTAGTCCCAACTTCAACCT+TGG + tig0039078:14064-14083 None:intergenic 45.0%
ACTGAGTATATGCAGTTCCC+TGG + tig0039078:14301-14320 None:intergenic 45.0%
GAATTCTGTACTCCGTGGAA+GGG + tig0039078:14387-14406 None:intergenic 45.0%
AGAATTCTGTACTCCGTGGA+AGG + tig0039078:14388-14407 None:intergenic 45.0%
GGTTGGAGAGAGAATTAGCA+AGG - tig0039078:14419-14438 Msa1457670:five_prime_UTR 45.0%
TAAAGCTCGACTCAGTGCAA+AGG + tig0039078:14534-14553 None:intergenic 45.0%
TGAGGAAGCAACGTGTGACT+CGG + tig0039078:11044-11063 None:intergenic 50.0%
TTGCTTCCTCAGTCTGTCTC+TGG - tig0039078:11053-11072 Msa1457670:three_prime_UTR 50.0%
GTGTCAGTCAGATGAAGCTG+TGG - tig0039078:11927-11946 Msa1457670:CDS 50.0%
TGTCAATTCCTGGGGCAGAA+GGG + tig0039078:12032-12051 None:intergenic 50.0%
! AGCGATGGTGTCAATTCCTG+GGG + tig0039078:12040-12059 None:intergenic 50.0%
! CAGCGATGGTGTCAATTCCT+GGG + tig0039078:12041-12060 None:intergenic 50.0%
! ACAGCGATGGTGTCAATTCC+TGG + tig0039078:12042-12061 None:intergenic 50.0%
AGTGGTAAAGGGTGGTGAAG+AGG - tig0039078:12178-12197 Msa1457670:intron 50.0%
GAAGAGGCAGAGCTACTTGT+CGG - tig0039078:12194-12213 Msa1457670:intron 50.0%
AGACTGGGTTTCAGAGCACA+AGG - tig0039078:12924-12943 Msa1457670:intron 50.0%
AGGGGAACTTTGAATGCAGC+AGG - tig0039078:13055-13074 Msa1457670:intron 50.0%
GGGGAACTTTGAATGCAGCA+GGG - tig0039078:13056-13075 Msa1457670:intron 50.0%
AGCCTGAACTGAAGATGGCA+CGG + tig0039078:13575-13594 None:intergenic 50.0%
GCCTGGACCATTTGATCTTG+TGG - tig0039078:13740-13759 Msa1457670:intron 50.0%
CCCACAAGATCAAATGGTCC+AGG + tig0039078:13744-13763 None:intergenic 50.0%
GCGCCATATGGGTCTAGCTA+GGG + tig0039078:11129-11148 None:intergenic 55.0%
AGCGCCATATGGGTCTAGCT+AGG + tig0039078:11130-11149 None:intergenic 55.0%
GGCGATGAGGAAGAGAAGGA+AGG + tig0039078:11176-11195 None:intergenic 55.0%
ATCGCCTCCCCTTTCCTTCA+AGG - tig0039078:11190-11209 Msa1457670:exon 55.0%
CTGACCTTGAAGGAAAGGGG+AGG + tig0039078:11197-11216 None:intergenic 55.0%
AATTCCTGGGGCAGAAGGGA+AGG + tig0039078:12028-12047 None:intergenic 55.0%
GTGTCAATTCCTGGGGCAGA+AGG + tig0039078:12033-12052 None:intergenic 55.0%
CTCCGTGCCATCTTCAGTTC+AGG - tig0039078:13570-13589 Msa1457670:CDS 55.0%
AGCCACACAAGACCCTTCCA+CGG - tig0039078:14372-14391 Msa1457670:CDS 55.0%
GGGAGGCGATGAGGAAGAGA+AGG + tig0039078:11180-11199 None:intergenic 60.0%
GAAGGAAAGGGGAGGCGATG+AGG + tig0039078:11189-11208 None:intergenic 60.0%
! CTCCGTGGAAGGGTCTTGTG+TGG + tig0039078:14377-14396 None:intergenic 60.0%
GGGACCTTCCCTTCTGCCCC+AGG - tig0039078:12021-12040 Msa1457670:intron 70.0%
Chromosome Type Strat End Strand Name
tig0039078 gene 10860 14692 10860 ID=Msa1457670;Name=Msa1457670
tig0039078 mRNA 10860 14692 10860 ID=Msa1457670-mRNA-1;Parent=Msa1457670;Name=Msa1457670-mRNA-1;_AED=0.12;_eAED=0.12;_QI=282|1|1|1|1|1|8|343|258
tig0039078 exon 10860 11250 10860 ID=Msa1457670-mRNA-1:exon:21335;Parent=Msa1457670-mRNA-1
tig0039078 exon 11436 11507 11436 ID=Msa1457670-mRNA-1:exon:21334;Parent=Msa1457670-mRNA-1
tig0039078 exon 11608 11811 11608 ID=Msa1457670-mRNA-1:exon:21333;Parent=Msa1457670-mRNA-1
tig0039078 exon 11919 11996 11919 ID=Msa1457670-mRNA-1:exon:21332;Parent=Msa1457670-mRNA-1
tig0039078 exon 13131 13219 13131 ID=Msa1457670-mRNA-1:exon:21331;Parent=Msa1457670-mRNA-1
tig0039078 exon 13322 13372 13322 ID=Msa1457670-mRNA-1:exon:21330;Parent=Msa1457670-mRNA-1
tig0039078 exon 13468 13632 13468 ID=Msa1457670-mRNA-1:exon:21329;Parent=Msa1457670-mRNA-1
tig0039078 exon 14341 14692 14341 ID=Msa1457670-mRNA-1:exon:21328;Parent=Msa1457670-mRNA-1
tig0039078 five_prime_UTR 14411 14692 14411 ID=Msa1457670-mRNA-1:five_prime_utr;Parent=Msa1457670-mRNA-1
tig0039078 CDS 14341 14410 14341 ID=Msa1457670-mRNA-1:cds;Parent=Msa1457670-mRNA-1
tig0039078 CDS 13468 13632 13468 ID=Msa1457670-mRNA-1:cds;Parent=Msa1457670-mRNA-1
tig0039078 CDS 13322 13372 13322 ID=Msa1457670-mRNA-1:cds;Parent=Msa1457670-mRNA-1
tig0039078 CDS 13131 13219 13131 ID=Msa1457670-mRNA-1:cds;Parent=Msa1457670-mRNA-1
tig0039078 CDS 11919 11996 11919 ID=Msa1457670-mRNA-1:cds;Parent=Msa1457670-mRNA-1
tig0039078 CDS 11608 11811 11608 ID=Msa1457670-mRNA-1:cds;Parent=Msa1457670-mRNA-1
tig0039078 CDS 11436 11507 11436 ID=Msa1457670-mRNA-1:cds;Parent=Msa1457670-mRNA-1
tig0039078 CDS 11203 11250 11203 ID=Msa1457670-mRNA-1:cds;Parent=Msa1457670-mRNA-1
tig0039078 three_prime_UTR 10860 11202 10860 ID=Msa1457670-mRNA-1:three_prime_utr;Parent=Msa1457670-mRNA-1
Gene Sequence

>Msa1457670

ATGGCGCTCATCAACAAGTTTTTGACTTTCTCCTTCCTTCTCTTCCTCATCGCCTCCCCTTTCCTTCAAGTTGCTAGGTGTCAGTCAGATGAAGCTGTGGAGAATACTGGTGAAGTGAATGACATCGGCATTGTTGGTGATGAAACTGATGATGCTCAAGACTTTGCTGATGGGACCTTCCCTTCTGCCCCAGGAATTGACACCATCGCTGTGTTCCCTAAGAATATTGCGAAATTGGTAAAGGGTGGTGAAGAGGCAGAGCTACTTGTCGGTCTGAAAAACGATGGGCAGTCCAGTTTGAATGTTGTTGCAATTAAGGCTAGTGTTCACCTTCCATACGATCATCGTCTTCTTGTTCAAAACCTTACTGTTCAGGTTTTCAACAATGGCTCCGTGCCATCTTCAGTTCAGGCTACTTTCCCATATATATTTTCTGTCAGCAAGTTCTTGCAGCCTGGACCATTTGATCTTGTGGGCACCATTGTATACGAGATAGACCAACATCCATACCAAAACACTTTCTATAATGGCACCATTGAAGTTGTTGAGCCTGGTGTTTTATTCAGTATGGAATCTGTTTTCCTTTTTACTCTTGGAATTGCACTTCTTATCCTACTTGGGCTATGGATTAATGGTCAAATACATAACCTGTCTAAGAAAACAAAAAGATCTTCCAAGGTTGAAGTTGGGACTAAGACTACAGATGCTTCAATGGATGAATGGCTTCAGGGAACTGCATATACTCAGTCTACGTCGAGCAAATCTAAGAAGAAGTAG

Protein sequence

>Msa1457670

MALINKFLTFSFLLFLIASPFLQVARCQSDEAVENTGEVNDIGIVGDETDDAQDFADGTFPSAPGIDTIAVFPKNIAKLVKGGEEAELLVGLKNDGQSSLNVVAIKASVHLPYDHRLLVQNLTVQVFNNGSVPSSVQATFPYIFSVSKFLQPGPFDLVGTIVYEIDQHPYQNTFYNGTIEVVEPGVLFSMESVFLFTLGIALLILLGLWINGQIHNLSKKTKRSSKVEVGTKTTDASMDEWLQGTAYTQSTSSKSKKK*