AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0910980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0910980 MtrunA17_Chr1g0150111 98.706 541 7 0 1 541 1 541 0.0 1104
Msa0910980 MtrunA17_Chr5g0410321 65.338 577 132 4 1 541 62 606 0.0 733
Msa0910980 MtrunA17_Chr8g0389541 30.961 281 174 8 271 538 275 548 3.90e-28 118
Msa0910980 MtrunA17_Chr7g0263951 31.560 282 173 10 271 538 325 600 2.99e-27 115
Msa0910980 MtrunA17_Chr2g0298001 23.878 490 324 15 83 533 109 588 2.94e-23 103
Msa0910980 MtrunA17_Chr8g0335841 22.691 498 295 18 90 533 111 572 4.91e-16 81.3
Msa0910980 MtrunA17_Chr4g0072181 22.899 345 230 10 209 520 32 373 2.06e-13 72.0
Msa0910980 MtrunA17_Chr8g0338601 22.846 267 189 8 278 534 367 626 1.73e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0910980 AT4G31180.1 64.632 557 179 4 3 541 2 558 0.0 733
Msa0910980 AT4G31180.2 64.632 557 179 4 3 541 2 558 0.0 733
Msa0910980 AT4G26870.1 65.825 515 170 4 28 541 23 532 0.0 694
Msa0910980 AT5G56680.1 30.882 272 168 8 278 536 303 567 2.74e-29 122
Msa0910980 AT4G17300.2 25.751 466 251 15 122 536 161 582 2.90e-28 119
Msa0910980 AT4G17300.1 25.751 466 251 15 122 536 141 562 3.20e-28 119
Msa0910980 AT1G70980.1 29.304 273 173 7 278 536 300 566 3.03e-25 110
Msa0910980 AT3G13490.1 22.133 497 294 17 94 533 136 596 2.57e-17 85.9

Find 161 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTACATCGATTCTTTC+AGG 0.151574 6_2:+16138916 Msa0910980:CDS
ATTCCAGCCGCTCCTATTAA+AGG 0.200895 6_2:+16136117 Msa0910980:CDS
CAAACAAATTAACACCTTTA+GGG 0.270476 6_2:-16137357 None:intergenic
ATGTCAATATGTGGTGATTT+TGG 0.279212 6_2:+16137023 Msa0910980:CDS
TTCTTAGTCATCAGAGAAAA+TGG 0.279492 6_2:+16135979 Msa0910980:CDS
CGGAAAATTCCTTGATTTGC+TGG 0.282793 6_2:-16136681 None:intergenic
TCAAAAGAGTTACTGTAGTT+TGG 0.284688 6_2:-16138606 None:intergenic
GATCCCCTTGCTGTCAATTA+TGG 0.290000 6_2:+16135805 Msa0910980:CDS
TATGTAAGCCGCAGAGTATT+TGG 0.299031 6_2:-16137541 None:intergenic
TGAAATTGAGAAGGCCATTC+AGG 0.299926 6_2:+16136372 Msa0910980:CDS
TGTTGTGAGGCACCTTTAAT+AGG 0.308209 6_2:-16136129 None:intergenic
CAAGAAGGATGCCGCAAAAC+TGG 0.308267 6_2:+16135717 Msa0910980:CDS
AGGCATCTGTGCGAGTTTAC+AGG 0.319353 6_2:+16137098 Msa0910980:CDS
AAGTAAGTCCAAGGCATTAT+TGG 0.332543 6_2:-16139290 None:intergenic
CAAAAGAGTTACTGTAGTTT+GGG 0.335107 6_2:-16138605 None:intergenic
CACCGTACAGTGCTTGGTTC+AGG 0.346864 6_2:+16136005 Msa0910980:CDS
TGGCGTCAAGCTACACCTTC+AGG 0.350829 6_2:-16139270 None:intergenic
AATTGTTTATAAGGCAGATT+GGG 0.354080 6_2:-16139708 None:intergenic
CACAATACAGTTTCCTCACT+TGG 0.354867 6_2:-16136291 None:intergenic
CATGATGGTATGAAATTGTT+TGG 0.357276 6_2:+16139655 Msa0910980:three_prime_UTR
CAGAAGATTCCTTTACTCAT+AGG 0.359787 6_2:+16137078 Msa0910980:CDS
CACACTCCTAAGTTGATTGC+TGG 0.375345 6_2:+16136912 Msa0910980:CDS
GTCCAGTCGTTGACATTGAC+AGG 0.393463 6_2:-16135862 None:intergenic
TAGCAAGGCATTGTATAAAA+TGG 0.394303 6_2:-16138576 None:intergenic
AGGTGGCGGCGGCAACTTCT+CGG 0.397158 6_2:-16135753 None:intergenic
GTACCACCACACGGTGGCTT+TGG 0.402704 6_2:+16139089 Msa0910980:CDS
GAATTGTTTATAAGGCAGAT+TGG 0.409095 6_2:-16139709 None:intergenic
ACAACTTGTTCGTGTGAATC+AGG 0.411639 6_2:+16136620 Msa0910980:CDS
CAAAGGGCAACCTGCATGCC+TGG 0.419819 6_2:+16136974 Msa0910980:CDS
TACAGGTCTTGATGTTGAAA+TGG 0.423398 6_2:+16137115 Msa0910980:CDS
AGGGTGGAGCTGCTGTCTTT+AGG 0.428133 6_2:+16136943 Msa0910980:CDS
GATTTGAAGAAGAACGAGAT+TGG 0.431028 6_2:-16134733 None:intergenic
ATGTGATTGAGTGATAAATA+TGG 0.439555 6_2:+16139527 Msa0910980:three_prime_UTR
GGAGTAGAGATTGAACCTTT+TGG 0.442706 6_2:+16138356 Msa0910980:CDS
CATTGACAGGGGTCTTCGAT+TGG 0.443151 6_2:-16135849 None:intergenic
AACACCTTTAGGGGTTCAAA+CGG 0.444877 6_2:-16137347 None:intergenic
ATCTGCGGACTCACTAAATC+AGG 0.450583 6_2:-16136033 None:intergenic
CTTGATTTGCTGGTGTTCGC+AGG 0.452358 6_2:-16136671 None:intergenic
AACGCCATCTTCTTCCCAAC+TGG 0.452718 6_2:-16135958 None:intergenic
GCCCTCCCACGGATTAGAAC+CGG 0.456675 6_2:-16135922 None:intergenic
GCAGCATCCTCGATATTAAT+CGG 0.461821 6_2:-16136337 None:intergenic
ATGAGAGTTTCGGAGAAATG+AGG 0.462622 6_2:-16134663 None:intergenic
TGGAGCTGCTGTCTTTAGGC+TGG 0.464922 6_2:+16136947 Msa0910980:CDS
GATTAAGAAACATTATTATG+AGG 0.466183 6_2:+16137139 Msa0910980:CDS
TTACATTTCCAACTTGAGAC+TGG 0.472065 6_2:-16136707 None:intergenic
TATTAAAGGTGCCTCACAAC+AGG 0.473545 6_2:+16136131 Msa0910980:CDS
CGGTGGCTTTGGAGTAGGCT+TGG 0.490259 6_2:+16139100 Msa0910980:CDS
TTAGGCGAGGAGATAATATC+AGG 0.491304 6_2:+16138819 Msa0910980:intron
TGAGGCTCTCAATGATTCAC+TGG 0.499024 6_2:+16135891 Msa0910980:CDS
TGGTTTCACCGTACAGTGCT+TGG 0.499781 6_2:+16135999 Msa0910980:CDS
AAAATGGTCTTACAGCCAAC+GGG 0.502027 6_2:-16138560 None:intergenic
GTCTTACAGCCAACGGGTAC+CGG 0.506627 6_2:-16138554 None:intergenic
TCAGTATTCAAGTCACCAAA+AGG 0.506705 6_2:-16138371 None:intergenic
TGAGAGTTTCGGAGAAATGA+GGG 0.508206 6_2:-16134662 None:intergenic
TTACCACACCCACTTTGAAA+AGG 0.509095 6_2:+16139479 Msa0910980:three_prime_UTR
CTAGATCCAGCAATCAACTT+AGG 0.510006 6_2:-16136918 None:intergenic
TTTCACCGTCAACTTGGAGC+TGG 0.511610 6_2:+16139360 Msa0910980:three_prime_UTR
TTTAATAGGAGCGGCTGGAA+TGG 0.513685 6_2:-16136115 None:intergenic
GAGTCTATTGTCGATGTCGA+AGG 0.513770 6_2:+16136084 Msa0910980:CDS
GCACCTTTAATAGGAGCGGC+TGG 0.516328 6_2:-16136120 None:intergenic
CACAAGCTATTCGACCAGTT+GGG 0.517268 6_2:+16135944 Msa0910980:CDS
GCACAAGCTATTCGACCAGT+TGG 0.517849 6_2:+16135943 Msa0910980:CDS
TAACACCAGCTCCAAGTTGA+CGG 0.522048 6_2:-16139365 None:intergenic
ACACCTTTAGGGGTTCAAAC+GGG 0.524064 6_2:-16137346 None:intergenic
CAGCCAACGGGTACCGGTGA+AGG 0.524085 6_2:-16138548 None:intergenic
CTGCGGCTTACATATGAAGA+AGG 0.526092 6_2:+16137550 Msa0910980:CDS
AAGAAGAACGAGATTGGAGA+TGG 0.527588 6_2:-16134727 None:intergenic
CATGCAGTTCTATATGAAGC+GGG 0.529598 6_2:-16139445 None:intergenic
AATGAATATATATACCTGAA+TGG 0.529761 6_2:-16136386 None:intergenic
GAAACTGTATTGTGTGAGTA+AGG 0.532678 6_2:+16136300 Msa0910980:CDS
AAACAAATTAACACCTTTAG+GGG 0.533347 6_2:-16137356 None:intergenic
GAATAGCTTGTGCCCTCCCA+CGG 0.535699 6_2:-16135933 None:intergenic
TTCCGCATCCAGTCTCAAGT+TGG 0.536075 6_2:+16136699 Msa0910980:CDS
GGAGTGAGTGATGAGAGTTT+CGG 0.536508 6_2:-16134673 None:intergenic
CTGCGAACACCAGCAAATCA+AGG 0.537117 6_2:+16136672 Msa0910980:CDS
GAAGTTGAGGTGACTGAGCC+AGG 0.538658 6_2:-16136992 None:intergenic
AGAAAGGAAACTAGGCCAGC+TGG 0.539715 6_2:+16138397 Msa0910980:CDS
TCTTTAGGCTGGACTACAAA+GGG 0.542694 6_2:+16136958 Msa0910980:CDS
CGATGTAGCAGAGGTGGCGG+CGG 0.543849 6_2:-16135764 None:intergenic
CCACACGGTGGCTTTGGAGT+AGG 0.547341 6_2:+16139095 Msa0910980:CDS
AACAAGCCGGTTCTAATCCG+TGG 0.547533 6_2:+16135916 Msa0910980:CDS
TTTGAACACAAAATGTAAGA+AGG 0.547679 6_2:+16137298 Msa0910980:CDS
GCTTGACGCCAATAATGCCT+TGG 0.549853 6_2:+16139282 Msa0910980:three_prime_UTR
CCCCTGTCAATGTCAACGAC+TGG 0.551263 6_2:+16135860 Msa0910980:CDS
TAAAATGGTCTTACAGCCAA+CGG 0.552316 6_2:-16138561 None:intergenic
TCGATATTAATCGGCAGAGT+AGG 0.553228 6_2:-16136328 None:intergenic
GGTGACTGAGCCAGGCATGC+AGG 0.555621 6_2:-16136984 None:intergenic
TCGATTGGAGCTCAATGAGC+GGG 0.557785 6_2:-16135834 None:intergenic
GACATTTGCTTGTGAAGTTG+AGG 0.558674 6_2:-16137005 None:intergenic
GCACAGATGCCTATGAGTAA+AGG 0.560403 6_2:-16137087 None:intergenic
CACAAGCAAATGTCAATATG+TGG 0.561198 6_2:+16137014 Msa0910980:CDS
TTCCAACTTGAGACTGGATG+CGG 0.563223 6_2:-16136701 None:intergenic
AAATGCTAATAACATCATCA+TGG 0.570368 6_2:-16139203 None:intergenic
AGTCGATGTAGCAGAGGTGG+CGG 0.572655 6_2:-16135767 None:intergenic
CAGAGTTCTATATCCTTCAC+CGG 0.573477 6_2:+16138535 Msa0910980:CDS
ATTAATCGGCAGAGTAGGAA+TGG 0.575600 6_2:-16136323 None:intergenic
TAGTTTGGGTTGTCATAGCA+AGG 0.575643 6_2:-16138591 None:intergenic
GAAGAACGTGCACAAGCTTG+CGG 0.577219 6_2:+16138873 Msa0910980:CDS
TTTATCCACGTGACCCACTC+AGG 0.577438 6_2:+16139174 Msa0910980:CDS
CACATTCAACTGAAGCCTGA+AGG 0.578547 6_2:+16139255 Msa0910980:three_prime_UTR
GTCTTTAGGCTGGACTACAA+AGG 0.579932 6_2:+16136957 Msa0910980:CDS
TCGACCAGTTGGGAAGAAGA+TGG 0.581394 6_2:+16135954 Msa0910980:CDS
AGACTCACGGCTGAGAGCGG+CGG 0.581736 6_2:-16136067 None:intergenic
TGCACAAGCTTGCGGCATTG+AGG 0.583418 6_2:+16138881 Msa0910980:CDS
AATCATTGAGAGCCTCAACT+CGG 0.583678 6_2:-16135885 None:intergenic
ACTGAAGCAGAAAGGAAACT+AGG 0.584857 6_2:+16138389 Msa0910980:CDS
GAGAGTCGATGTAGCAGAGG+TGG 0.585897 6_2:-16135770 None:intergenic
TACTCTGCCGATTAATATCG+AGG 0.589627 6_2:+16136330 Msa0910980:CDS
TCCAGTCGTTGACATTGACA+GGG 0.592334 6_2:-16135861 None:intergenic
AGAGAGAGTCGATGTAGCAG+AGG 0.593608 6_2:-16135773 None:intergenic
ACTTGAATACTGAAGCAGAA+AGG 0.595013 6_2:+16138381 Msa0910980:CDS
TGATTTAGTGAGTCCGCAGA+TGG 0.596877 6_2:+16136035 Msa0910980:CDS
GTACCCGTTTGAACCCCTAA+AGG 0.597654 6_2:+16137343 Msa0910980:CDS
ATCATTGAGAGCCTCAACTC+GGG 0.599803 6_2:-16135884 None:intergenic
CAACGACTGGACCCGAGTTG+AGG 0.600329 6_2:+16135873 Msa0910980:CDS
TCAAGAGCCGACACTGTCAT+CGG 0.603493 6_2:+16135663 Msa0910980:CDS
GATCCTTCCGATGACAGTGT+CGG 0.605021 6_2:-16135670 None:intergenic
TGAGGCACCTTTAATAGGAG+CGG 0.608618 6_2:-16136124 None:intergenic
TATCCTTCACCGGTACCCGT+TGG 0.609544 6_2:+16138545 Msa0910980:CDS
GCCGGTTCTAATCCGTGGGA+GGG 0.610769 6_2:+16135921 Msa0910980:CDS
TTCGATTGGAGCTCAATGAG+CGG 0.611035 6_2:-16135835 None:intergenic
CAGCAATCAACTTAGGAGTG+TGG 0.611888 6_2:-16136911 None:intergenic
TGATTCACTGGAGAACAAGC+CGG 0.613416 6_2:+16135903 Msa0910980:CDS
GCGGCAAATTTCACCATCTG+CGG 0.614321 6_2:-16136048 None:intergenic
ATTGCTGGATCTAGTGAGGG+TGG 0.614640 6_2:+16136927 Msa0910980:CDS
ATACCATAATTGACAGCAAG+GGG 0.614733 6_2:-16135808 None:intergenic
ACAAGCCGGTTCTAATCCGT+GGG 0.615482 6_2:+16135917 Msa0910980:CDS
TATTGTCGATGTCGAAGGTG+TGG 0.616371 6_2:+16136089 Msa0910980:CDS
TCAGGCTTCAGTTGAATGTG+AGG 0.617159 6_2:-16139252 None:intergenic
ATCATGGTGCAATCCTGAGT+GGG 0.620490 6_2:-16139187 None:intergenic
GCATGCAGTTCTATATGAAG+CGG 0.621106 6_2:-16139446 None:intergenic
AATAGACTCACGGCTGAGAG+CGG 0.623488 6_2:-16136070 None:intergenic
AGCCGGTTCTAATCCGTGGG+AGG 0.623958 6_2:+16135920 Msa0910980:CDS
AAGTGAAGTTGAAATTGAGA+AGG 0.624126 6_2:+16136363 Msa0910980:CDS
GAGCCGACACTGTCATCGGA+AGG 0.625324 6_2:+16135667 Msa0910980:CDS
TGTTTGGAAAAGTAAGTCCA+AGG 0.629031 6_2:-16139299 None:intergenic
TAAGAAGGATCTCGAAGCTG+TGG 0.629352 6_2:+16137313 Msa0910980:CDS
GTTGATTGCTGGATCTAGTG+AGG 0.632210 6_2:+16136923 Msa0910980:CDS
CAATACCATAATTGACAGCA+AGG 0.634292 6_2:-16135810 None:intergenic
CGTGTAGTAATGCTCTTCTG+TGG 0.635161 6_2:+16139125 Msa0910980:CDS
TGCCTGAACCAAGCACTGTA+CGG 0.635520 6_2:-16136007 None:intergenic
ATCATAACCAACCTGTTGTG+AGG 0.639858 6_2:-16136142 None:intergenic
AGAAGGTATTCAGATGCTCA+AGG 0.641602 6_2:+16137567 Msa0910980:CDS
ATTGTTTATAAGGCAGATTG+GGG 0.642473 6_2:-16139707 None:intergenic
TTGATTGCTGGATCTAGTGA+GGG 0.644845 6_2:+16136924 Msa0910980:CDS
ACTCCAAAGCCACCGTGTGG+TGG 0.646949 6_2:-16139092 None:intergenic
ACACTATTAAAATAGTGCTG+TGG 0.647523 6_2:+16139319 Msa0910980:three_prime_UTR
CATCATGGTGCAATCCTGAG+TGG 0.650761 6_2:-16139188 None:intergenic
CGACATCGACAATAGACTCA+CGG 0.651944 6_2:-16136080 None:intergenic
GAATCTTCTGCTCTAAACAC+AGG 0.652142 6_2:-16137065 None:intergenic
AGATATGGTGTACCACCACA+CGG 0.671410 6_2:+16139080 Msa0910980:intron
TATAGGTTGAAATCCAAGTG+AGG 0.674003 6_2:+16136278 Msa0910980:intron
GCAATCCTGAGTGGGTCACG+TGG 0.689157 6_2:-16139179 None:intergenic
AATACCATAATTGACAGCAA+GGG 0.690003 6_2:-16135809 None:intergenic
ATGCAGTTCTATATGAAGCG+GGG 0.701942 6_2:-16139444 None:intergenic
ACGAGATTGGAGATGGTGTG+TGG 0.706722 6_2:-16134720 None:intergenic
TGGCGGCGGCAACTTCTCGG+CGG 0.706873 6_2:-16135750 None:intergenic
CCTACTCCAAAGCCACCGTG+TGG 0.729566 6_2:-16139095 None:intergenic
CCAGTCGTTGACATTGACAG+GGG 0.731951 6_2:-16135860 None:intergenic
AGTATCTTCCAAATACTCTG+CGG 0.740430 6_2:+16137533 Msa0910980:intron
TATGGTGTACCACCACACGG+TGG 0.820152 6_2:+16139083 Msa0910980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTTAATGTAATGACTT+TGG + chr6_2:16134958-16134977 Msa0910980:intron 15.0%
!!! TTTGATTGAAAATTTTACAA+TGG + chr6_2:16135065-16135084 Msa0910980:intron 15.0%
!! ATTCTTAAAGAATCTAAAAA+TGG - chr6_2:16135129-16135148 None:intergenic 15.0%
!!! GAGTTTAATTTTATCATATA+TGG - chr6_2:16135552-16135571 None:intergenic 15.0%
!!! GATTTTGATTTTGATTATAA+TGG + chr6_2:16136235-16136254 Msa0910980:intron 15.0%
!! AGAATAATATTAGAGAAAAT+AGG - chr6_2:16136735-16136754 None:intergenic 15.0%
!! ATTATATAAATGTCATTGAA+AGG + chr6_2:16137851-16137870 Msa0910980:intron 15.0%
!! TTTCTTGAATTAAATTGAAA+AGG - chr6_2:16138074-16138093 None:intergenic 15.0%
!! TTTCAATTTAATTCAAGAAA+AGG + chr6_2:16138074-16138093 Msa0910980:intron 15.0%
!! TCTTAGATAAAAATTAGAAA+GGG - chr6_2:16139554-16139573 None:intergenic 15.0%
!! TTCTTAGATAAAAATTAGAA+AGG - chr6_2:16139555-16139574 None:intergenic 15.0%
!! TTCTTGAAGAAACTAAAAAT+TGG - chr6_2:16134858-16134877 None:intergenic 20.0%
!! TTGAAGAAAAAAAATTGCAA+TGG + chr6_2:16135380-16135399 Msa0910980:intron 20.0%
!! TGAAGAAAAAAAATTGCAAT+GGG + chr6_2:16135381-16135400 Msa0910980:intron 20.0%
!! TAAGTACTTGAAAATTTACT+TGG + chr6_2:16135424-16135443 Msa0910980:intron 20.0%
!!! ATTAAGTTGAGATCAATTTT+TGG + chr6_2:16135451-16135470 Msa0910980:intron 20.0%
!! AATGAATATATATACCTGAA+TGG - chr6_2:16136389-16136408 None:intergenic 20.0%
!! TCAATTACAACATTTCTAAT+CGG - chr6_2:16136413-16136432 None:intergenic 20.0%
!!! TGTTGTTTTGTTTAATATAC+TGG + chr6_2:16136539-16136558 Msa0910980:intron 20.0%
!!! CATTTCTTAAGTTAGTTTAT+CGG - chr6_2:16136820-16136839 None:intergenic 20.0%
!! GATTAAGAAACATTATTATG+AGG + chr6_2:16137139-16137158 Msa0910980:CDS 20.0%
!!! TCAATTTATTTGTTTTGTAG+TGG + chr6_2:16137417-16137436 Msa0910980:intron 20.0%
!!! CAATTTATTTGTTTTGTAGT+GGG + chr6_2:16137418-16137437 Msa0910980:intron 20.0%
!!! TCAATTTTACAAAATAGACA+GGG - chr6_2:16137694-16137713 None:intergenic 20.0%
!!! TCTATTTTGTAAAATTGAGA+GGG + chr6_2:16137696-16137715 Msa0910980:intron 20.0%
!! TTTAAACTTTACAACAAGAT+TGG - chr6_2:16137801-16137820 None:intergenic 20.0%
!! TAAATTGATGAAAATGTACT+TGG + chr6_2:16137892-16137911 Msa0910980:intron 20.0%
!! AAATTGATGAAAATGTACTT+GGG + chr6_2:16137893-16137912 Msa0910980:intron 20.0%
!! AATAGTTACAATTATTTGGT+TGG - chr6_2:16138045-16138064 None:intergenic 20.0%
!! AACCAAATAATTGTAACTAT+TGG + chr6_2:16138044-16138063 Msa0910980:intron 20.0%
!! ACCAAATAATTGTAACTATT+GGG + chr6_2:16138045-16138064 Msa0910980:intron 20.0%
!! ACTGTAACTATGATATATAT+AGG + chr6_2:16138257-16138276 Msa0910980:intron 20.0%
!! TAACTATGATATATATAGGA+TGG + chr6_2:16138261-16138280 Msa0910980:intron 20.0%
!! TGTAATTCTATTTATAGGTA+TGG + chr6_2:16138510-16138529 Msa0910980:intron 20.0%
!!! TCTGGTTATAATGATTTTAT+GGG + chr6_2:16139014-16139033 Msa0910980:intron 20.0%
!! AATACTGAATAGACAAAAAA+TGG - chr6_2:16139506-16139525 None:intergenic 20.0%
!! CTTAGATAAAAATTAGAAAG+GGG - chr6_2:16139553-16139572 None:intergenic 20.0%
!!! GAATACTTTTTAAGATCTTT+TGG + chr6_2:16139605-16139624 Msa0910980:three_prime_UTR 20.0%
! GTTGTATTTCTTCGTTTATT+GGG + chr6_2:16134980-16134999 Msa0910980:intron 25.0%
! CTTAAAGAATCTAAAAATGG+AGG - chr6_2:16135126-16135145 None:intergenic 25.0%
!! GGTATTTGTTAAAAGGATTT+AGG + chr6_2:16135238-16135257 Msa0910980:intron 25.0%
!! GTTGTATTTGTTAGCTTAAT+GGG + chr6_2:16135260-16135279 Msa0910980:intron 25.0%
!! AAAATTTTACACTGATGTTG+TGG + chr6_2:16135355-16135374 Msa0910980:intron 25.0%
! GAAGAAAAAAAATTGCAATG+GGG + chr6_2:16135382-16135401 Msa0910980:intron 25.0%
! TTGGTACTAATGTAATTTGA+TGG + chr6_2:16135470-16135489 Msa0910980:intron 25.0%
!! GATTATCTAACCATCATTTT+TGG + chr6_2:16135496-16135515 Msa0910980:intron 25.0%
! ATGATTAGTACCAAAAATGA+TGG - chr6_2:16135509-16135528 None:intergenic 25.0%
! ATCAGAAACAAAAAGCAAAA+AGG + chr6_2:16135690-16135709 Msa0910980:CDS 25.0%
!! GTTATGATATCTTGTTACTT+AGG + chr6_2:16136157-16136176 Msa0910980:intron 25.0%
!!! TTGATTATAATGGTGTTATG+TGG + chr6_2:16136245-16136264 Msa0910980:intron 25.0%
!! AACTTAAGAAATGCATTTTG+CGG + chr6_2:16136827-16136846 Msa0910980:intron 25.0%
! ACATTATTATGAGGTACATT+TGG + chr6_2:16137148-16137167 Msa0910980:intron 25.0%
!! ACTGATACTTTTGTGTTTTT+TGG + chr6_2:16137228-16137247 Msa0910980:intron 25.0%
! TTTGAACACAAAATGTAAGA+AGG + chr6_2:16137298-16137317 Msa0910980:CDS 25.0%
! AAACAAATTAACACCTTTAG+GGG - chr6_2:16137359-16137378 None:intergenic 25.0%
! CAAACAAATTAACACCTTTA+GGG - chr6_2:16137360-16137379 None:intergenic 25.0%
!!! CTAAAGGTGTTAATTTGTTT+GGG + chr6_2:16137359-16137378 Msa0910980:intron 25.0%
! GATAAACAAACAAATGTGAT+AGG + chr6_2:16137631-16137650 Msa0910980:intron 25.0%
!! CTCAATTTTACAAAATAGAC+AGG - chr6_2:16137695-16137714 None:intergenic 25.0%
!! GTCTATTTTGTAAAATTGAG+AGG + chr6_2:16137695-16137714 Msa0910980:intron 25.0%
!! CTATTTTGTAAAATTGAGAG+GGG + chr6_2:16137697-16137716 Msa0910980:intron 25.0%
! TATAAGATTAAACTGTACAC+AGG - chr6_2:16137751-16137770 None:intergenic 25.0%
!! CTAAATGAGATCTCATTTTA+TGG - chr6_2:16137957-16137976 None:intergenic 25.0%
! TTTAGTCATTTCATTGATGA+TGG + chr6_2:16137972-16137991 Msa0910980:intron 25.0%
!! TGGAATTTTCAAAAATTGGA+GGG - chr6_2:16138025-16138044 None:intergenic 25.0%
!! TTGGAATTTTCAAAAATTGG+AGG - chr6_2:16138026-16138045 None:intergenic 25.0%
!! TGGTTGGAATTTTCAAAAAT+TGG - chr6_2:16138029-16138048 None:intergenic 25.0%
! CCAAATAATTGTAACTATTG+GGG + chr6_2:16138046-16138065 Msa0910980:intron 25.0%
! AAAGGACATAGTTATTTGAT+TGG + chr6_2:16138092-16138111 Msa0910980:intron 25.0%
!!! TTTCCTCTTTTAGTTAGTTT+TGG + chr6_2:16138176-16138195 Msa0910980:intron 25.0%
!!! TTCCTCTTTTAGTTAGTTTT+GGG + chr6_2:16138177-16138196 Msa0910980:intron 25.0%
!! GTTATAAAAGATTTGAGACA+GGG - chr6_2:16138439-16138458 None:intergenic 25.0%
!! AGTTATAAAAGATTTGAGAC+AGG - chr6_2:16138440-16138459 None:intergenic 25.0%
! TCGACTGTAATTCTATTTAT+AGG + chr6_2:16138505-16138524 Msa0910980:intron 25.0%
!! AATGCTTTGTTATGACAATT+TGG + chr6_2:16138675-16138694 Msa0910980:intron 25.0%
! GTTCAATGTCTTTGTTAATA+CGG + chr6_2:16138964-16138983 Msa0910980:intron 25.0%
! TTCAATGTCTTTGTTAATAC+GGG + chr6_2:16138965-16138984 Msa0910980:intron 25.0%
!! CTCTGGTTATAATGATTTTA+TGG + chr6_2:16139013-16139032 Msa0910980:intron 25.0%
!! CTGGTTATAATGATTTTATG+GGG + chr6_2:16139015-16139034 Msa0910980:intron 25.0%
!!! TGATCAATCATTTAGTTTTC+TGG - chr6_2:16139055-16139074 None:intergenic 25.0%
! TGATTGATCATTTACAGATA+TGG + chr6_2:16139065-16139084 Msa0910980:intron 25.0%
! AAATGCTAATAACATCATCA+TGG - chr6_2:16139206-16139225 None:intergenic 25.0%
!!! AGCACTATTTTAATAGTGTT+TGG - chr6_2:16139318-16139337 None:intergenic 25.0%
! ATGTGATTGAGTGATAAATA+TGG + chr6_2:16139527-16139546 Msa0910980:three_prime_UTR 25.0%
!! GTTTTTACTTATGTACATGA+TGG + chr6_2:16139640-16139659 Msa0910980:three_prime_UTR 25.0%
! AAATTGGTTTCTACCAATAG+AGG - chr6_2:16134842-16134861 None:intergenic 30.0%
GGTTGTATTTCTTCGTTTAT+TGG + chr6_2:16134979-16134998 Msa0910980:intron 30.0%
ACATTTATCAAACACCTAGT+AGG - chr6_2:16135009-16135028 None:intergenic 30.0%
TGTTTGATAAATGTCCTAAG+TGG + chr6_2:16135015-16135034 Msa0910980:intron 30.0%
AAATTCAAAGAACACCACTT+AGG - chr6_2:16135032-16135051 None:intergenic 30.0%
TACCATTTGAGCACAAAAAA+CGG - chr6_2:16135155-16135174 None:intergenic 30.0%
! TGAATCTTGTTTCTTGAGTT+TGG + chr6_2:16135186-16135205 Msa0910980:intron 30.0%
! GGTTGTATTTGTTAGCTTAA+TGG + chr6_2:16135259-16135278 Msa0910980:intron 30.0%
! TGTTTGTTAAGTGTTCTAAG+TGG + chr6_2:16135295-16135314 Msa0910980:intron 30.0%
AAAAAAAATTGCAATGGGGT+TGG + chr6_2:16135386-16135405 Msa0910980:intron 30.0%
! GTTTTCTCACATTGTTTGTT+TGG + chr6_2:16135610-16135629 Msa0910980:intron 30.0%
AATACCATAATTGACAGCAA+GGG - chr6_2:16135812-16135831 None:intergenic 30.0%
TTCTTAGTCATCAGAGAAAA+TGG + chr6_2:16135979-16135998 Msa0910980:CDS 30.0%
TTTGTGAGTTGTGATTGTTT+AGG + chr6_2:16136213-16136232 Msa0910980:intron 30.0%
!!! TATGTGGTTTTGTTCTCTAT+AGG + chr6_2:16136261-16136280 Msa0910980:intron 30.0%
AAGTGAAGTTGAAATTGAGA+AGG + chr6_2:16136363-16136382 Msa0910980:CDS 30.0%
ACACACATCTTTAATCAGAA+AGG - chr6_2:16136515-16136534 None:intergenic 30.0%
!!! GTTGATGGTGATTTTTTAAC+TGG + chr6_2:16136584-16136603 Msa0910980:intron 30.0%
! TCTTAAGTTAGTTTATCGGT+AGG - chr6_2:16136816-16136835 None:intergenic 30.0%
! ATGTCAATATGTGGTGATTT+TGG + chr6_2:16137023-16137042 Msa0910980:CDS 30.0%
!! ATACTTTTGTGTTTTTTGGC+AGG + chr6_2:16137232-16137251 Msa0910980:intron 30.0%
CCAAACAAATTAACACCTTT+AGG - chr6_2:16137361-16137380 None:intergenic 30.0%
!! CCTAAAGGTGTTAATTTGTT+TGG + chr6_2:16137358-16137377 Msa0910980:intron 30.0%
!! TTTCATTGATGATGGTAGTT+TGG + chr6_2:16137980-16137999 Msa0910980:intron 30.0%
!! TTCATTGATGATGGTAGTTT+GGG + chr6_2:16137981-16138000 Msa0910980:intron 30.0%
CCCCAATAGTTACAATTATT+TGG - chr6_2:16138049-16138068 None:intergenic 30.0%
!!! TTTAGTTAGTTTTGGGAGTT+TGG + chr6_2:16138184-16138203 Msa0910980:intron 30.0%
!!! ATTACTTTTCTAAAACCAGC+TGG - chr6_2:16138415-16138434 None:intergenic 30.0%
!! TAGCAAGGCATTGTATAAAA+TGG - chr6_2:16138579-16138598 None:intergenic 30.0%
CAAAAGAGTTACTGTAGTTT+GGG - chr6_2:16138608-16138627 None:intergenic 30.0%
TCAAAAGAGTTACTGTAGTT+TGG - chr6_2:16138609-16138628 None:intergenic 30.0%
! TATGGAAGTACAAACACATT+TGG - chr6_2:16138744-16138763 None:intergenic 30.0%
ACAAAGACATTGAACATGAT+AGG - chr6_2:16138959-16138978 None:intergenic 30.0%
ACACTATTAAAATAGTGCTG+TGG + chr6_2:16139319-16139338 Msa0910980:three_prime_UTR 30.0%
! AAAATGGTCCTTTTCAAAGT+GGG - chr6_2:16139490-16139509 None:intergenic 30.0%
! AAAAATGGTCCTTTTCAAAG+TGG - chr6_2:16139491-16139510 None:intergenic 30.0%
CATGATGGTATGAAATTGTT+TGG + chr6_2:16139655-16139674 Msa0910980:three_prime_UTR 30.0%
GATTTGAAGAAGAACGAGAT+TGG - chr6_2:16134736-16134755 None:intergenic 35.0%
TAACCTTCGATTTCCTCTAT+TGG + chr6_2:16134826-16134845 Msa0910980:intron 35.0%
!!! TTCCGTTTTTTGTGCTCAAA+TGG + chr6_2:16135150-16135169 Msa0910980:intron 35.0%
TTTAACAAATACCAGCACAG+AGG - chr6_2:16135231-16135250 None:intergenic 35.0%
! CTGTGCTGGTATTTGTTAAA+AGG + chr6_2:16135231-16135250 Msa0910980:intron 35.0%
ACACTTAACAAACACCTAGA+GGG - chr6_2:16135289-16135308 None:intergenic 35.0%
AACACTTAACAAACACCTAG+AGG - chr6_2:16135290-16135309 None:intergenic 35.0%
TATAATTCAAGCTCAGCAAG+AGG + chr6_2:16135576-16135595 Msa0910980:intron 35.0%
ATAATTCAAGCTCAGCAAGA+GGG + chr6_2:16135577-16135596 Msa0910980:intron 35.0%
! TCACATTGTTTGTTTGGTTC+AGG + chr6_2:16135616-16135635 Msa0910980:intron 35.0%
ATACCATAATTGACAGCAAG+GGG - chr6_2:16135811-16135830 None:intergenic 35.0%
CAATACCATAATTGACAGCA+AGG - chr6_2:16135813-16135832 None:intergenic 35.0%
! TATAGGTTGAAATCCAAGTG+AGG + chr6_2:16136278-16136297 Msa0910980:intron 35.0%
GAAACTGTATTGTGTGAGTA+AGG + chr6_2:16136300-16136319 Msa0910980:CDS 35.0%
CACCATCAACATTCATGTAA+GGG - chr6_2:16136574-16136593 None:intergenic 35.0%
TCACCATCAACATTCATGTA+AGG - chr6_2:16136575-16136594 None:intergenic 35.0%
TTACATTTCCAACTTGAGAC+TGG - chr6_2:16136710-16136729 None:intergenic 35.0%
CACAAGCAAATGTCAATATG+TGG + chr6_2:16137014-16137033 Msa0910980:CDS 35.0%
CAGAAGATTCCTTTACTCAT+AGG + chr6_2:16137078-16137097 Msa0910980:CDS 35.0%
TACAGGTCTTGATGTTGAAA+TGG + chr6_2:16137115-16137134 Msa0910980:CDS 35.0%
! TTTGCGTTTGAAATTGTCGA+GGG + chr6_2:16137191-16137210 Msa0910980:intron 35.0%
!!! TTGTGTTTTTTGGCAGGTTA+TGG + chr6_2:16137238-16137257 Msa0910980:intron 35.0%
GAAGATACTGCACATTCATA+GGG - chr6_2:16137522-16137541 None:intergenic 35.0%
AGTATCTTCCAAATACTCTG+CGG + chr6_2:16137533-16137552 Msa0910980:intron 35.0%
CAAATGTGATAGGATGATGA+TGG + chr6_2:16137641-16137660 Msa0910980:intron 35.0%
! TTTTGTAAAATTGAGAGGGG+TGG + chr6_2:16137700-16137719 Msa0910980:intron 35.0%
GAAAATGTACTTGGGTAAAC+AGG + chr6_2:16137901-16137920 Msa0910980:intron 35.0%
!! TCATTGATGATGGTAGTTTG+GGG + chr6_2:16137982-16138001 Msa0910980:intron 35.0%
CAAGTTAGTGACACTTGTTT+AGG + chr6_2:16138119-16138138 Msa0910980:intron 35.0%
TAGGTTCCTAACTATTGTTG+AGG + chr6_2:16138138-16138157 Msa0910980:intron 35.0%
GGAATTCCTCAACAATAGTT+AGG - chr6_2:16138147-16138166 None:intergenic 35.0%
AACTATTGTTGAGGAATTCC+TGG + chr6_2:16138147-16138166 Msa0910980:intron 35.0%
ACTATTGTTGAGGAATTCCT+GGG + chr6_2:16138148-16138167 Msa0910980:intron 35.0%
TAAAAGAGGAAAAATACCCC+AGG - chr6_2:16138168-16138187 None:intergenic 35.0%
CTCCCAAAACTAACTAAAAG+AGG - chr6_2:16138182-16138201 None:intergenic 35.0%
! GAGTAATGATTTTGCTTTGC+AGG + chr6_2:16138328-16138347 Msa0910980:intron 35.0%
TCAGTATTCAAGTCACCAAA+AGG - chr6_2:16138374-16138393 None:intergenic 35.0%
ACTTGAATACTGAAGCAGAA+AGG + chr6_2:16138381-16138400 Msa0910980:CDS 35.0%
! TAAAATGGTCTTACAGCCAA+CGG - chr6_2:16138564-16138583 None:intergenic 35.0%
! TCTTTTGATGTCTTCATTCG+AGG + chr6_2:16138621-16138640 Msa0910980:CDS 35.0%
! GCACGCAATTAATCATGTTT+TGG + chr6_2:16138699-16138718 Msa0910980:intron 35.0%
! TCCATAAAAGCTGAAGCTTT+TGG + chr6_2:16138758-16138777 Msa0910980:intron 35.0%
! CCATAAAAGCTGAAGCTTTT+GGG + chr6_2:16138759-16138778 Msa0910980:intron 35.0%
! CTATTCAATCCTTGTTGCTT+AGG + chr6_2:16138801-16138820 Msa0910980:intron 35.0%
CTTTGTTAATACGGGTGTTT+AGG + chr6_2:16138973-16138992 Msa0910980:intron 35.0%
! AAGTAAGTCCAAGGCATTAT+TGG - chr6_2:16139293-16139312 None:intergenic 35.0%
TGTTTGGAAAAGTAAGTCCA+AGG - chr6_2:16139302-16139321 None:intergenic 35.0%
! TTCTATTTTCACCGTCAACT+TGG + chr6_2:16139354-16139373 Msa0910980:three_prime_UTR 35.0%
!!! TTAAGATCTTTTGGAGCTGA+TGG + chr6_2:16139614-16139633 Msa0910980:three_prime_UTR 35.0%
TGAGAGTTTCGGAGAAATGA+GGG - chr6_2:16134665-16134684 None:intergenic 40.0%
ATGAGAGTTTCGGAGAAATG+AGG - chr6_2:16134666-16134685 None:intergenic 40.0%
AAGAAGAACGAGATTGGAGA+TGG - chr6_2:16134730-16134749 None:intergenic 40.0%
CTACCAATAGAGGAAATCGA+AGG - chr6_2:16134832-16134851 None:intergenic 40.0%
ATCATATATGGTGCAGTCAC+TGG - chr6_2:16135540-16135559 None:intergenic 40.0%
AATCATTGAGAGCCTCAACT+CGG - chr6_2:16135888-16135907 None:intergenic 40.0%
! TGTTGTGAGGCACCTTTAAT+AGG - chr6_2:16136132-16136151 None:intergenic 40.0%
!! TATTAAAGGTGCCTCACAAC+AGG + chr6_2:16136131-16136150 Msa0910980:CDS 40.0%
ATCATAACCAACCTGTTGTG+AGG - chr6_2:16136145-16136164 None:intergenic 40.0%
CACAATACAGTTTCCTCACT+TGG - chr6_2:16136294-16136313 None:intergenic 40.0%
ATTAATCGGCAGAGTAGGAA+TGG - chr6_2:16136326-16136345 None:intergenic 40.0%
TCGATATTAATCGGCAGAGT+AGG - chr6_2:16136331-16136350 None:intergenic 40.0%
! TACTCTGCCGATTAATATCG+AGG + chr6_2:16136330-16136349 Msa0910980:CDS 40.0%
GCAGCATCCTCGATATTAAT+CGG - chr6_2:16136340-16136359 None:intergenic 40.0%
TGAAATTGAGAAGGCCATTC+AGG + chr6_2:16136372-16136391 Msa0910980:CDS 40.0%
CTACAATCAAGATGAGAGTG+TGG + chr6_2:16136447-16136466 Msa0910980:intron 40.0%
CTCCCTTACATGAATGTTGA+TGG + chr6_2:16136569-16136588 Msa0910980:intron 40.0%
!!! GGTGATTTTTTAACTGGTGC+AGG + chr6_2:16136590-16136609 Msa0910980:intron 40.0%
!!! ATTTTTTAACTGGTGCAGGC+TGG + chr6_2:16136594-16136613 Msa0910980:intron 40.0%
! ACAACTTGTTCGTGTGAATC+AGG + chr6_2:16136620-16136639 Msa0910980:CDS 40.0%
!! CGGAAAATTCCTTGATTTGC+TGG - chr6_2:16136684-16136703 None:intergenic 40.0%
! GTTGCTGCTTGTAAGTTTGT+TGG + chr6_2:16136782-16136801 Msa0910980:intron 40.0%
! ATGCATTTTGCGGTGTGATA+CGG + chr6_2:16136837-16136856 Msa0910980:intron 40.0%
CTAGATCCAGCAATCAACTT+AGG - chr6_2:16136921-16136940 None:intergenic 40.0%
TTGATTGCTGGATCTAGTGA+GGG + chr6_2:16136924-16136943 Msa0910980:CDS 40.0%
TCTTTAGGCTGGACTACAAA+GGG + chr6_2:16136958-16136977 Msa0910980:CDS 40.0%
GACATTTGCTTGTGAAGTTG+AGG - chr6_2:16137008-16137027 None:intergenic 40.0%
!!! TTTGGCCGTGTTTTTGAGAT+TGG + chr6_2:16137041-16137060 Msa0910980:CDS 40.0%
CAGGACCAATCTCAAAAACA+CGG - chr6_2:16137049-16137068 None:intergenic 40.0%
! GAATCTTCTGCTCTAAACAC+AGG - chr6_2:16137068-16137087 None:intergenic 40.0%
! GTTTGCGTTTGAAATTGTCG+AGG + chr6_2:16137190-16137209 Msa0910980:intron 40.0%
! AACACCTTTAGGGGTTCAAA+CGG - chr6_2:16137350-16137369 None:intergenic 40.0%
GGAAGATACTGCACATTCAT+AGG - chr6_2:16137523-16137542 None:intergenic 40.0%
! TATGTAAGCCGCAGAGTATT+TGG - chr6_2:16137544-16137563 None:intergenic 40.0%
!! AGAAGGTATTCAGATGCTCA+AGG + chr6_2:16137567-16137586 Msa0910980:CDS 40.0%
!! ATGTGATAGGATGATGATGG+CGG + chr6_2:16137644-16137663 Msa0910980:intron 40.0%
GACAGGGATAAAAGACGTAA+AGG - chr6_2:16137678-16137697 None:intergenic 40.0%
!! TGGAAGTTTAAGCACTGGTA+GGG + chr6_2:16137720-16137739 Msa0910980:intron 40.0%
CTATTGTTGAGGAATTCCTG+GGG + chr6_2:16138149-16138168 Msa0910980:intron 40.0%
TCATTACTCGCTGCTAAACA+AGG - chr6_2:16138317-16138336 None:intergenic 40.0%
! GATTTTGCTTTGCAGGAAGT+TGG + chr6_2:16138335-16138354 Msa0910980:intron 40.0%
! GGAGTAGAGATTGAACCTTT+TGG + chr6_2:16138356-16138375 Msa0910980:CDS 40.0%
ACTGAAGCAGAAAGGAAACT+AGG + chr6_2:16138389-16138408 Msa0910980:CDS 40.0%
CAGAGTTCTATATCCTTCAC+CGG + chr6_2:16138535-16138554 Msa0910980:CDS 40.0%
! AAAATGGTCTTACAGCCAAC+GGG - chr6_2:16138563-16138582 None:intergenic 40.0%
!! TAGTTTGGGTTGTCATAGCA+AGG - chr6_2:16138594-16138613 None:intergenic 40.0%
! ACACATTTGGAGAAGCATGA+TGG - chr6_2:16138731-16138750 None:intergenic 40.0%
! CCCAAAAGCTTCAGCTTTTA+TGG - chr6_2:16138762-16138781 None:intergenic 40.0%
TTAGGCGAGGAGATAATATC+AGG + chr6_2:16138819-16138838 Msa0910980:intron 40.0%
! TATCCACGTGCCTGAATTTT+TGG + chr6_2:16138851-16138870 Msa0910980:CDS 40.0%
GCACGTTCTTCCAAAAATTC+AGG - chr6_2:16138864-16138883 None:intergenic 40.0%
!! CTGCTTACATCGATTCTTTC+AGG + chr6_2:16138916-16138935 Msa0910980:CDS 40.0%
ATAACCAGAGCTCAGTAAGA+GGG - chr6_2:16139003-16139022 None:intergenic 40.0%
TATAACCAGAGCTCAGTAAG+AGG - chr6_2:16139004-16139023 None:intergenic 40.0%
ATGCAGTTCTATATGAAGCG+GGG - chr6_2:16139447-16139466 None:intergenic 40.0%
CATGCAGTTCTATATGAAGC+GGG - chr6_2:16139448-16139467 None:intergenic 40.0%
GCATGCAGTTCTATATGAAG+CGG - chr6_2:16139449-16139468 None:intergenic 40.0%
! TTACCACACCCACTTTGAAA+AGG + chr6_2:16139479-16139498 Msa0910980:three_prime_UTR 40.0%
GGAGTGAGTGATGAGAGTTT+CGG - chr6_2:16134676-16134695 None:intergenic 45.0%
GGCGAAGAAGAAAAAGAACG+CGG - chr6_2:16134702-16134721 None:intergenic 45.0%
! CGTTTATTGGGTTGCCTACT+AGG + chr6_2:16134992-16135011 Msa0910980:intron 45.0%
ATTGCAATGGGGTTGGAATG+AGG + chr6_2:16135393-16135412 Msa0910980:intron 45.0%
TTGCAATGGGGTTGGAATGA+GGG + chr6_2:16135394-16135413 Msa0910980:intron 45.0%
AAGCAAAAAGGCCTCCAAGA+AGG + chr6_2:16135702-16135721 Msa0910980:CDS 45.0%
!!! GCGTTGCTTTTCCAGTTTTG+CGG - chr6_2:16135731-16135750 None:intergenic 45.0%
! GATCCCCTTGCTGTCAATTA+TGG + chr6_2:16135805-16135824 Msa0910980:CDS 45.0%
TTCGATTGGAGCTCAATGAG+CGG - chr6_2:16135838-16135857 None:intergenic 45.0%
TCCAGTCGTTGACATTGACA+GGG - chr6_2:16135864-16135883 None:intergenic 45.0%
ATCATTGAGAGCCTCAACTC+GGG - chr6_2:16135887-16135906 None:intergenic 45.0%
TGAGGCTCTCAATGATTCAC+TGG + chr6_2:16135891-16135910 Msa0910980:CDS 45.0%
TGATTCACTGGAGAACAAGC+CGG + chr6_2:16135903-16135922 Msa0910980:CDS 45.0%
CACAAGCTATTCGACCAGTT+GGG + chr6_2:16135944-16135963 Msa0910980:CDS 45.0%
ATCTGCGGACTCACTAAATC+AGG - chr6_2:16136036-16136055 None:intergenic 45.0%
TGATTTAGTGAGTCCGCAGA+TGG + chr6_2:16136035-16136054 Msa0910980:CDS 45.0%
CGACATCGACAATAGACTCA+CGG - chr6_2:16136083-16136102 None:intergenic 45.0%
GAGTCTATTGTCGATGTCGA+AGG + chr6_2:16136084-16136103 Msa0910980:CDS 45.0%
TATTGTCGATGTCGAAGGTG+TGG + chr6_2:16136089-16136108 Msa0910980:CDS 45.0%
TTTAATAGGAGCGGCTGGAA+TGG - chr6_2:16136118-16136137 None:intergenic 45.0%
ATTCCAGCCGCTCCTATTAA+AGG + chr6_2:16136117-16136136 Msa0910980:CDS 45.0%
! TGAGGCACCTTTAATAGGAG+CGG - chr6_2:16136127-16136146 None:intergenic 45.0%
TTCCAACTTGAGACTGGATG+CGG - chr6_2:16136704-16136723 None:intergenic 45.0%
CAGCAATCAACTTAGGAGTG+TGG - chr6_2:16136914-16136933 None:intergenic 45.0%
!! CACACTCCTAAGTTGATTGC+TGG + chr6_2:16136912-16136931 Msa0910980:CDS 45.0%
GTTGATTGCTGGATCTAGTG+AGG + chr6_2:16136923-16136942 Msa0910980:CDS 45.0%
GTCTTTAGGCTGGACTACAA+AGG + chr6_2:16136957-16136976 Msa0910980:CDS 45.0%
GCACAGATGCCTATGAGTAA+AGG - chr6_2:16137090-16137109 None:intergenic 45.0%
TAAGAAGGATCTCGAAGCTG+TGG + chr6_2:16137313-16137332 Msa0910980:CDS 45.0%
! ACACCTTTAGGGGTTCAAAC+GGG - chr6_2:16137349-16137368 None:intergenic 45.0%
CTGCGGCTTACATATGAAGA+AGG + chr6_2:16137550-16137569 Msa0910980:CDS 45.0%
!! GTGGAAGTTTAAGCACTGGT+AGG + chr6_2:16137719-16137738 Msa0910980:intron 45.0%
CTTCCAAAAATTCAGGCACG+TGG - chr6_2:16138857-16138876 None:intergenic 45.0%
TAACCAGAGCTCAGTAAGAG+GGG - chr6_2:16139002-16139021 None:intergenic 45.0%
AGATATGGTGTACCACCACA+CGG + chr6_2:16139080-16139099 Msa0910980:intron 45.0%
ATCATGGTGCAATCCTGAGT+GGG - chr6_2:16139190-16139209 None:intergenic 45.0%
TCAGGCTTCAGTTGAATGTG+AGG - chr6_2:16139255-16139274 None:intergenic 45.0%
CACATTCAACTGAAGCCTGA+AGG + chr6_2:16139255-16139274 Msa0910980:three_prime_UTR 45.0%
! TAACACCAGCTCCAAGTTGA+CGG - chr6_2:16139368-16139387 None:intergenic 45.0%
AGAAGAAAAAGAACGCGGCG+AGG - chr6_2:16134697-16134716 None:intergenic 50.0%
ACGAGATTGGAGATGGTGTG+TGG - chr6_2:16134723-16134742 None:intergenic 50.0%
!! AGCTTAATGGGTTGCCCTCT+AGG + chr6_2:16135272-16135291 Msa0910980:intron 50.0%
TCAAGAGCCGACACTGTCAT+CGG + chr6_2:16135663-16135682 Msa0910980:CDS 50.0%
GATCCTTCCGATGACAGTGT+CGG - chr6_2:16135673-16135692 None:intergenic 50.0%
! TTTTGCGGCATCCTTCTTGG+AGG - chr6_2:16135716-16135735 None:intergenic 50.0%
! CAGTTTTGCGGCATCCTTCT+TGG - chr6_2:16135719-16135738 None:intergenic 50.0%
CAAGAAGGATGCCGCAAAAC+TGG + chr6_2:16135717-16135736 Msa0910980:CDS 50.0%
AGAGAGAGTCGATGTAGCAG+AGG - chr6_2:16135776-16135795 None:intergenic 50.0%
TCGATTGGAGCTCAATGAGC+GGG - chr6_2:16135837-16135856 None:intergenic 50.0%
CATTGACAGGGGTCTTCGAT+TGG - chr6_2:16135852-16135871 None:intergenic 50.0%
CCAGTCGTTGACATTGACAG+GGG - chr6_2:16135863-16135882 None:intergenic 50.0%
GTCCAGTCGTTGACATTGAC+AGG - chr6_2:16135865-16135884 None:intergenic 50.0%
! AACAAGCCGGTTCTAATCCG+TGG + chr6_2:16135916-16135935 Msa0910980:CDS 50.0%
! ACAAGCCGGTTCTAATCCGT+GGG + chr6_2:16135917-16135936 Msa0910980:CDS 50.0%
GCACAAGCTATTCGACCAGT+TGG + chr6_2:16135943-16135962 Msa0910980:CDS 50.0%
TCGACCAGTTGGGAAGAAGA+TGG + chr6_2:16135954-16135973 Msa0910980:CDS 50.0%
AACGCCATCTTCTTCCCAAC+TGG - chr6_2:16135961-16135980 None:intergenic 50.0%
TGGTTTCACCGTACAGTGCT+TGG + chr6_2:16135999-16136018 Msa0910980:CDS 50.0%
! TGCCTGAACCAAGCACTGTA+CGG - chr6_2:16136010-16136029 None:intergenic 50.0%
GCGGCAAATTTCACCATCTG+CGG - chr6_2:16136051-16136070 None:intergenic 50.0%
AATAGACTCACGGCTGAGAG+CGG - chr6_2:16136073-16136092 None:intergenic 50.0%
!! AAAGGTGCCTCACAACAGGT+TGG + chr6_2:16136135-16136154 Msa0910980:intron 50.0%
!! CTTGATTTGCTGGTGTTCGC+AGG - chr6_2:16136674-16136693 None:intergenic 50.0%
CTGCGAACACCAGCAAATCA+AGG + chr6_2:16136672-16136691 Msa0910980:CDS 50.0%
TTCCGCATCCAGTCTCAAGT+TGG + chr6_2:16136699-16136718 Msa0910980:CDS 50.0%
TTTGCGGTGTGATACGGTGT+TGG + chr6_2:16136843-16136862 Msa0910980:intron 50.0%
TTGCGGTGTGATACGGTGTT+GGG + chr6_2:16136844-16136863 Msa0910980:intron 50.0%
ATTGCTGGATCTAGTGAGGG+TGG + chr6_2:16136927-16136946 Msa0910980:CDS 50.0%
AGGCATCTGTGCGAGTTTAC+AGG + chr6_2:16137098-16137117 Msa0910980:CDS 50.0%
GTACCCGTTTGAACCCCTAA+AGG + chr6_2:16137343-16137362 Msa0910980:CDS 50.0%
AGGGGTGGAAGTTTAAGCAC+TGG + chr6_2:16137715-16137734 Msa0910980:intron 50.0%
AGAAAGGAAACTAGGCCAGC+TGG + chr6_2:16138397-16138416 Msa0910980:CDS 50.0%
! CAATCCTTGTTGCTTAGGCG+AGG + chr6_2:16138806-16138825 Msa0910980:intron 50.0%
ATCTCCTCGCCTAAGCAACA+AGG - chr6_2:16138813-16138832 None:intergenic 50.0%
GAAGAACGTGCACAAGCTTG+CGG + chr6_2:16138873-16138892 Msa0910980:CDS 50.0%
TTTATCCACGTGACCCACTC+AGG + chr6_2:16139174-16139193 Msa0910980:CDS 50.0%
CATCATGGTGCAATCCTGAG+TGG - chr6_2:16139191-16139210 None:intergenic 50.0%
GCTTGACGCCAATAATGCCT+TGG + chr6_2:16139282-16139301 Msa0910980:three_prime_UTR 50.0%
TTTCACCGTCAACTTGGAGC+TGG + chr6_2:16139360-16139379 Msa0910980:three_prime_UTR 50.0%
! GGTCCTTTTCAAAGTGGGTG+TGG - chr6_2:16139485-16139504 None:intergenic 50.0%
GTGATGTGATGCCTCTGTGC+TGG + chr6_2:16135217-16135236 Msa0910980:intron 55.0%
AGTCGATGTAGCAGAGGTGG+CGG - chr6_2:16135770-16135789 None:intergenic 55.0%
GAGAGTCGATGTAGCAGAGG+TGG - chr6_2:16135773-16135792 None:intergenic 55.0%
CCCCTGTCAATGTCAACGAC+TGG + chr6_2:16135860-16135879 Msa0910980:CDS 55.0%
! GAATAGCTTGTGCCCTCCCA+CGG - chr6_2:16135936-16135955 None:intergenic 55.0%
CACCGTACAGTGCTTGGTTC+AGG + chr6_2:16136005-16136024 Msa0910980:CDS 55.0%
GCACCTTTAATAGGAGCGGC+TGG - chr6_2:16136123-16136142 None:intergenic 55.0%
! GGTGTGATACGGTGTTGGGT+AGG + chr6_2:16136848-16136867 Msa0910980:intron 55.0%
AGGGTGGAGCTGCTGTCTTT+AGG + chr6_2:16136943-16136962 Msa0910980:CDS 55.0%
TGGAGCTGCTGTCTTTAGGC+TGG + chr6_2:16136947-16136966 Msa0910980:CDS 55.0%
GAAGTTGAGGTGACTGAGCC+AGG - chr6_2:16136995-16137014 None:intergenic 55.0%
TATCCTTCACCGGTACCCGT+TGG + chr6_2:16138545-16138564 Msa0910980:CDS 55.0%
GTCTTACAGCCAACGGGTAC+CGG - chr6_2:16138557-16138576 None:intergenic 55.0%
TGCACAAGCTTGCGGCATTG+AGG + chr6_2:16138881-16138900 Msa0910980:CDS 55.0%
TATGGTGTACCACCACACGG+TGG + chr6_2:16139083-16139102 Msa0910980:CDS 55.0%
TGGCGTCAAGCTACACCTTC+AGG - chr6_2:16139273-16139292 None:intergenic 55.0%
GAGCCGACACTGTCATCGGA+AGG + chr6_2:16135667-16135686 Msa0910980:CDS 60.0%
CAACGACTGGACCCGAGTTG+AGG + chr6_2:16135873-16135892 Msa0910980:CDS 60.0%
! AGCCGGTTCTAATCCGTGGG+AGG + chr6_2:16135920-16135939 Msa0910980:CDS 60.0%
! GCCGGTTCTAATCCGTGGGA+GGG + chr6_2:16135921-16135940 Msa0910980:CDS 60.0%
!! GCCCTCCCACGGATTAGAAC+CGG - chr6_2:16135925-16135944 None:intergenic 60.0%
CAAAGGGCAACCTGCATGCC+TGG + chr6_2:16136974-16136993 Msa0910980:CDS 60.0%
CTGCCCCTCTTACTGAGCTC+TGG + chr6_2:16138996-16139015 Msa0910980:intron 60.0%
GTACCACCACACGGTGGCTT+TGG + chr6_2:16139089-16139108 Msa0910980:CDS 60.0%
ACTCCAAAGCCACCGTGTGG+TGG - chr6_2:16139095-16139114 None:intergenic 60.0%
CCTACTCCAAAGCCACCGTG+TGG - chr6_2:16139098-16139117 None:intergenic 60.0%
!! CCACACGGTGGCTTTGGAGT+AGG + chr6_2:16139095-16139114 Msa0910980:CDS 60.0%
!! CGGTGGCTTTGGAGTAGGCT+TGG + chr6_2:16139100-16139119 Msa0910980:CDS 60.0%
GCAATCCTGAGTGGGTCACG+TGG - chr6_2:16139182-16139201 None:intergenic 60.0%
! AGGTGGCGGCGGCAACTTCT+CGG - chr6_2:16135756-16135775 None:intergenic 65.0%
! CGATGTAGCAGAGGTGGCGG+CGG - chr6_2:16135767-16135786 None:intergenic 65.0%
AGACTCACGGCTGAGAGCGG+CGG - chr6_2:16136070-16136089 None:intergenic 65.0%
GGTGACTGAGCCAGGCATGC+AGG - chr6_2:16136987-16137006 None:intergenic 65.0%
!! CAGCCAACGGGTACCGGTGA+AGG - chr6_2:16138551-16138570 None:intergenic 65.0%
TGGCGGCGGCAACTTCTCGG+CGG - chr6_2:16135753-16135772 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 16134642 16139718 16134642 ID=Msa0910980;Name=Msa0910980
chr6_2 mRNA 16134642 16139718 16134642 ID=Msa0910980-mRNA-1;Parent=Msa0910980;Name=Msa0910980-mRNA-1;_AED=0.19;_eAED=0.19;_QI=124|1|1|1|0.9|0.81|11|510|541
chr6_2 exon 16134642 16134757 16134642 ID=Msa0910980-mRNA-1:exon:3576;Parent=Msa0910980-mRNA-1
chr6_2 exon 16135638 16136152 16135638 ID=Msa0910980-mRNA-1:exon:3577;Parent=Msa0910980-mRNA-1
chr6_2 exon 16136283 16136393 16136283 ID=Msa0910980-mRNA-1:exon:3578;Parent=Msa0910980-mRNA-1
chr6_2 exon 16136612 16136725 16136612 ID=Msa0910980-mRNA-1:exon:3579;Parent=Msa0910980-mRNA-1
chr6_2 exon 16136870 16137160 16136870 ID=Msa0910980-mRNA-1:exon:3580;Parent=Msa0910980-mRNA-1
chr6_2 exon 16137254 16137364 16137254 ID=Msa0910980-mRNA-1:exon:3581;Parent=Msa0910980-mRNA-1
chr6_2 exon 16137535 16137588 16137535 ID=Msa0910980-mRNA-1:exon:3582;Parent=Msa0910980-mRNA-1
chr6_2 exon 16138350 16138429 16138350 ID=Msa0910980-mRNA-1:exon:3583;Parent=Msa0910980-mRNA-1
chr6_2 exon 16138527 16138642 16138527 ID=Msa0910980-mRNA-1:exon:3584;Parent=Msa0910980-mRNA-1
chr6_2 exon 16138823 16138937 16138823 ID=Msa0910980-mRNA-1:exon:3585;Parent=Msa0910980-mRNA-1
chr6_2 exon 16139082 16139718 16139082 ID=Msa0910980-mRNA-1:exon:3586;Parent=Msa0910980-mRNA-1
chr6_2 five_prime_UTR 16134642 16134757 16134642 ID=Msa0910980-mRNA-1:five_prime_utr;Parent=Msa0910980-mRNA-1
chr6_2 five_prime_UTR 16135638 16135645 16135638 ID=Msa0910980-mRNA-1:five_prime_utr;Parent=Msa0910980-mRNA-1
chr6_2 CDS 16135646 16136152 16135646 ID=Msa0910980-mRNA-1:cds;Parent=Msa0910980-mRNA-1
chr6_2 CDS 16136283 16136393 16136283 ID=Msa0910980-mRNA-1:cds;Parent=Msa0910980-mRNA-1
chr6_2 CDS 16136612 16136725 16136612 ID=Msa0910980-mRNA-1:cds;Parent=Msa0910980-mRNA-1
chr6_2 CDS 16136870 16137160 16136870 ID=Msa0910980-mRNA-1:cds;Parent=Msa0910980-mRNA-1
chr6_2 CDS 16137254 16137364 16137254 ID=Msa0910980-mRNA-1:cds;Parent=Msa0910980-mRNA-1
chr6_2 CDS 16137535 16137588 16137535 ID=Msa0910980-mRNA-1:cds;Parent=Msa0910980-mRNA-1
chr6_2 CDS 16138350 16138429 16138350 ID=Msa0910980-mRNA-1:cds;Parent=Msa0910980-mRNA-1
chr6_2 CDS 16138527 16138642 16138527 ID=Msa0910980-mRNA-1:cds;Parent=Msa0910980-mRNA-1
chr6_2 CDS 16138823 16138937 16138823 ID=Msa0910980-mRNA-1:cds;Parent=Msa0910980-mRNA-1
chr6_2 CDS 16139082 16139208 16139082 ID=Msa0910980-mRNA-1:cds;Parent=Msa0910980-mRNA-1
chr6_2 three_prime_UTR 16139209 16139718 16139209 ID=Msa0910980-mRNA-1:three_prime_utr;Parent=Msa0910980-mRNA-1
Gene Sequence

>Msa0910980

ATGTCAACTTCAGAATCTCAAGAGCCGACACTGTCATCGGAAGGATCAGAAACAAAAAGCAAAAAGGCCTCCAAGAAGGATGCCGCAAAACTGGAAAAGCAACGCCGCCGAGAAGTTGCCGCCGCCACCTCTGCTACATCGACTCTCTCTGTCGAAGATGATCCCCTTGCTGTCAATTATGGTATTGTCCCGCTCATTGAGCTCCAATCGAAGACCCCTGTCAATGTCAACGACTGGACCCGAGTTGAGGCTCTCAATGATTCACTGGAGAACAAGCCGGTTCTAATCCGTGGGAGGGCACAAGCTATTCGACCAGTTGGGAAGAAGATGGCGTTCTTAGTCATCAGAGAAAATGGTTTCACCGTACAGTGCTTGGTTCAGGCACAACCTGATTTAGTGAGTCCGCAGATGGTGAAATTTGCCGCCGCTCTCAGCCGTGAGTCTATTGTCGATGTCGAAGGTGTGGTTTCCATTCCAGCCGCTCCTATTAAAGGTGCCTCACAACAGGTTGAAATCCAAGTGAGGAAACTGTATTGTGTGAGTAAGGCCATTCCTACTCTGCCGATTAATATCGAGGATGCTGCTCGAAGTGAAGTTGAAATTGAGAAGGCCATTCAGGCTGGTGAACAACTTGTTCGTGTGAATCAGGATACACGATTGAATTTTAGAGTACTTGACCTGCGAACACCAGCAAATCAAGGAATTTTCCGCATCCAGTCTCAAGTTGGAAATGCGTTCAGACAATTTTTATTAGCTGAAAGCTTTGTTGAAATCCACACTCCTAAGTTGATTGCTGGATCTAGTGAGGGTGGAGCTGCTGTCTTTAGGCTGGACTACAAAGGGCAACCTGCATGCCTGGCTCAGTCACCTCAACTTCACAAGCAAATGTCAATATGTGGTGATTTTGGCCGTGTTTTTGAGATTGGTCCTGTGTTTAGAGCAGAAGATTCCTTTACTCATAGGCATCTGTGCGAGTTTACAGGTCTTGATGTTGAAATGGAGATTAAGAAACATTATTATGAGGTTATGGATGTAGTTGACAAATTGTTTGTTGCTATGTTTGACACTTTGAACACAAAATGTAAGAAGGATCTCGAAGCTGTGGCAAATCAGTACCCGTTTGAACCCCTAAAGTATCTTCCAAATACTCTGCGGCTTACATATGAAGAAGGTATTCAGATGCTCAAGGAAGTTGGAGTAGAGATTGAACCTTTTGGTGACTTGAATACTGAAGCAGAAAGGAAACTAGGCCAGCTGGTTTTAGAAAAGTATGGAACAGAGTTCTATATCCTTCACCGGTACCCGTTGGCTGTAAGACCATTTTATACAATGCCTTGCTATGACAACCCAAACTACAGTAACTCTTTTGATGTCTTCATTCGAGGCGAGGAGATAATATCAGGAGCTCAGCGTATCCACGTGCCTGAATTTTTGGAAGAACGTGCACAAGCTTGCGGCATTGAGGTCAAGACAATATCTGCTTACATCGATTCTTTCAGATATGGTGTACCACCACACGGTGGCTTTGGAGTAGGCTTGGAGCGTGTAGTAATGCTCTTCTGTGGCTTGAACAACATTCGCAAAACATCACTTTATCCACGTGACCCACTCAGGATTGCACCATGA

Protein sequence

>Msa0910980

MSTSESQEPTLSSEGSETKSKKASKKDAAKLEKQRRREVAAATSATSTLSVEDDPLAVNYGIVPLIELQSKTPVNVNDWTRVEALNDSLENKPVLIRGRAQAIRPVGKKMAFLVIRENGFTVQCLVQAQPDLVSPQMVKFAAALSRESIVDVEGVVSIPAAPIKGASQQVEIQVRKLYCVSKAIPTLPINIEDAARSEVEIEKAIQAGEQLVRVNQDTRLNFRVLDLRTPANQGIFRIQSQVGNAFRQFLLAESFVEIHTPKLIAGSSEGGAAVFRLDYKGQPACLAQSPQLHKQMSICGDFGRVFEIGPVFRAEDSFTHRHLCEFTGLDVEMEIKKHYYEVMDVVDKLFVAMFDTLNTKCKKDLEAVANQYPFEPLKYLPNTLRLTYEEGIQMLKEVGVEIEPFGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCYDNPNYSNSFDVFIRGEEIISGAQRIHVPEFLEERAQACGIEVKTISAYIDSFRYGVPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP*