AlfalfaGEDB | Msa1264020

M. sativa cultivar zhongmu-4 / Msa1264020

KEGG: K01488
GO: GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006154 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009164 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0017144 GO:0018130 GO:0019239 GO:0019438 GO:0019439 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0042278 GO:0042451 GO:0042454 GO:0042455 GO:0042737 GO:0043094 GO:0043101 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046085 GO:0046102 GO:0046103 GO:0046128 GO:0046129 GO:0046130 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:1901135 GO:1901136 GO:1901137 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1901659
PFAM: PF00962.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1264020	XP_003610403.1	96.021	377	14	1	1	377	1	376	0.0	739

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1264020	sp\|Q8LPL7\|ADAL_ARATH	66.575	362	110	1	13	374	1	351	2.08e-175	495

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1264020	G7JI13	96.021	377	14	1	1	377	1	376	0.0	739

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa1264020	-0.852531	4.341876e-61	-8.615850e-47
Msa0002490	Msa1264020	0.800934	1.141777e-48	-8.615850e-47
Msa0002930	Msa1264020	0.819352	1.214898e-52	-8.615850e-47
Msa0004920	Msa1264020	0.819707	1.008428e-52	-8.615850e-47
Msa0008340	Msa1264020	0.802694	4.968108e-49	-8.615850e-47
Msa0012060	Msa1264020	0.806999	6.261281e-50	-8.615850e-47
Msa0013050	Msa1264020	-0.827579	1.447465e-54	-8.615850e-47
Msa0014710	Msa1264020	0.827025	1.964065e-54	-8.615850e-47
Msa0014920	Msa1264020	0.820368	7.117460e-53	-8.615850e-47
Msa0016670	Msa1264020	0.825759	3.934301e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1264020	MtrunA17_Chr4g0074591	96.944	360	10	1	1	360	1	359	0.0	715
Msa1264020	MtrunA17_Chr2g0288101	69.459	370	102	2	12	379	2	362	0.0	528

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1264020	AT4G04880.1	66.575	362	110	1	13	374	1	351	2.12e-176	495
Msa1264020	AT4G04880.2	61.637	391	110	2	13	374	1	380	2.50e-170	481
Msa1264020	AT4G04880.3	68.889	270	73	1	13	282	1	259	1.87e-131	378

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Find 120 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGGAAATGATAACAA+GGG	0.637400	8_2:-67429247	Msa1264020:three_prime_UTR
AAAATTGCTGCTTCTTCATT+TGG	0.270139	8_2:-67429926	Msa1264020:intron
AAAGGTATGTGTTGATAAAG+TGG	0.514853	8_2:-67429387	Msa1264020:three_prime_UTR
AAATGATGAGCATCAATTGA+TGG	0.417937	8_2:+67430405	None:intergenic
AATATTGGATTGAGAAGCAT+AGG	0.514496	8_2:-67432856	Msa1264020:five_prime_UTR
AATGAGTTAACAAGGTTGTT+TGG	0.296616	8_2:-67429577	Msa1264020:three_prime_UTR
AATGATATACCATTCACCAA+CGG	0.687223	8_2:+67431143	None:intergenic
ACATGCATGTTTCTTTGAGG+AGG	0.579495	8_2:-67430829	Msa1264020:CDS
ACTAAAATTTGCTCGAGAAC+AGG	0.322893	8_2:-67431019	Msa1264020:CDS
ACTAAAGAATAGATTGAAAT+TGG	0.226773	8_2:-67429547	Msa1264020:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCCATCCTTGATAAAAATAT+TGG	-	chr8_2:67429189-67429208	Msa1264020:three_prime_UTR	30.0%
ACACGATTACTCCAAATTTA+GGG	-	chr8_2:67429639-67429658	Msa1264020:three_prime_UTR	30.0%
AGGTGCTAGAATATCATATT+AGG	-	chr8_2:67429758-67429777	Msa1264020:CDS	30.0%
TGCTAGAATATCATATTAGG+TGG	-	chr8_2:67429761-67429780	Msa1264020:CDS	30.0%
GTAAGAATAGTAGTCTAGAT+GGG	-	chr8_2:67429819-67429838	Msa1264020:intron	30.0%
TAAGAATAGTAGTCTAGATG+GGG	-	chr8_2:67429820-67429839	Msa1264020:intron	30.0%
TAATCAAGCGGAAAATACTT+GGG	+	chr8_2:67430292-67430311	None:intergenic	30.0%
ATGCAGAAAAATGAATCCAA+AGG	-	chr8_2:67430521-67430540	Msa1264020:intron	30.0%
TATATTGAAGCTGTACTTGA+AGG	-	chr8_2:67430560-67430579	Msa1264020:intron	30.0%
AAATCATTTGGGCAAACTTA+AGG	-	chr8_2:67430788-67430807	Msa1264020:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	67429177	67432905	67429177	ID=Msa1264020;Name=Msa1264020
chr8_2	mRNA	67429177	67432905	67429177	ID=Msa1264020-mRNA-1;Parent=Msa1264020;Name=Msa1264020-mRNA-1;_AED=0.16;_eAED=0.16;_QI=145\|1\|1\|1\|1\|1\|11\|535\|379
chr8_2	exon	67429177	67429836	67429177	ID=Msa1264020-mRNA-1:exon:22168;Parent=Msa1264020-mRNA-1
chr8_2	exon	67429927	67430031	67429927	ID=Msa1264020-mRNA-1:exon:22167;Parent=Msa1264020-mRNA-1
chr8_2	exon	67430403	67430469	67430403	ID=Msa1264020-mRNA-1:exon:22166;Parent=Msa1264020-mRNA-1
chr8_2	exon	67430794	67430907	67430794	ID=Msa1264020-mRNA-1:exon:22165;Parent=Msa1264020-mRNA-1
chr8_2	exon	67430990	67431059	67430990	ID=Msa1264020-mRNA-1:exon:22164;Parent=Msa1264020-mRNA-1
chr8_2	exon	67431153	67431229	67431153	ID=Msa1264020-mRNA-1:exon:22163;Parent=Msa1264020-mRNA-1
chr8_2	exon	67431310	67431555	67431310	ID=Msa1264020-mRNA-1:exon:22162;Parent=Msa1264020-mRNA-1
chr8_2	exon	67431640	67431699	67431640	ID=Msa1264020-mRNA-1:exon:22161;Parent=Msa1264020-mRNA-1
chr8_2	exon	67431944	67432035	67431944	ID=Msa1264020-mRNA-1:exon:22160;Parent=Msa1264020-mRNA-1
chr8_2	exon	67432497	67432567	67432497	ID=Msa1264020-mRNA-1:exon:22159;Parent=Msa1264020-mRNA-1
chr8_2	exon	67432648	67432905	67432648	ID=Msa1264020-mRNA-1:exon:22158;Parent=Msa1264020-mRNA-1
chr8_2	five_prime_UTR	67432761	67432905	67432761	ID=Msa1264020-mRNA-1:five_prime_utr;Parent=Msa1264020-mRNA-1
chr8_2	CDS	67432648	67432760	67432648	ID=Msa1264020-mRNA-1:cds;Parent=Msa1264020-mRNA-1
chr8_2	CDS	67432497	67432567	67432497	ID=Msa1264020-mRNA-1:cds;Parent=Msa1264020-mRNA-1
chr8_2	CDS	67431944	67432035	67431944	ID=Msa1264020-mRNA-1:cds;Parent=Msa1264020-mRNA-1
chr8_2	CDS	67431640	67431699	67431640	ID=Msa1264020-mRNA-1:cds;Parent=Msa1264020-mRNA-1
chr8_2	CDS	67431310	67431555	67431310	ID=Msa1264020-mRNA-1:cds;Parent=Msa1264020-mRNA-1
chr8_2	CDS	67431153	67431229	67431153	ID=Msa1264020-mRNA-1:cds;Parent=Msa1264020-mRNA-1
chr8_2	CDS	67430990	67431059	67430990	ID=Msa1264020-mRNA-1:cds;Parent=Msa1264020-mRNA-1
chr8_2	CDS	67430794	67430907	67430794	ID=Msa1264020-mRNA-1:cds;Parent=Msa1264020-mRNA-1
chr8_2	CDS	67430403	67430469	67430403	ID=Msa1264020-mRNA-1:cds;Parent=Msa1264020-mRNA-1
chr8_2	CDS	67429927	67430031	67429927	ID=Msa1264020-mRNA-1:cds;Parent=Msa1264020-mRNA-1
chr8_2	CDS	67429712	67429836	67429712	ID=Msa1264020-mRNA-1:cds;Parent=Msa1264020-mRNA-1
chr8_2	three_prime_UTR	67429177	67429711	67429177	ID=Msa1264020-mRNA-1:three_prime_utr;Parent=Msa1264020-mRNA-1

Gene Sequence

>Msa1264020

ATGACCAAGATACAAGACGCAAGAAAGGAGAGTGAGATGGAGTGGTGTATGTCAATTCCAAAGGTAGAATTGCATGCTCACCTCAATGGATCCATCAGAGACTCCACACTTCTCGAACTTGCTAAAGGTTTGGGTGATAAGGGTCTCATTGATTTCTCCCAAGTCCAGCATGTTATCCTCAAAAACGATCGTTCATTATCTGAGGTATTCAAGCTGTTTGACGTAATCCACATTCTTACAACTGATCATGCGACGGTTACAAGAATTACGAAAGAAGTTGTTGAAGATTTTGCGTCAGAGAATGTTGTATATGTGGAGTTGAGAACTACTCCAAAGAAAAATGAATCCAAAGGAATGAGCAAACGCTCTTATATTGAAGCTGTACTTGAAGGTCTAAGATCTGTCAGTTCGGTTGATCTGGGTTTTATTCCTTTCAGCGAAGAGATTAAAAACCATTCAAACCCTATACTCTCAGTCTCAGCTACAGATGATAGAAGTAATGAAAATACTAGGAAAAAAATCTTTGTTAGGCTTCTCTTAAGCATTGACCGGAGGGAGACAACGGAAGCAGCAATGGAAACTGTCATGCTTGCATTGGAAATGAGGCATTTTGGGGTTGTTGGAATTGACCTCTCTGGGAATCCAGCCGTTGGTGAATGGGTTACATATTTGCCAGCACTAAAATTTGCTCGAGAACAGGGTCTTTATGTAACTCTTCACTGTGGAGAGGTGCCTAACTTGAGGGAGATACATGATATGCTTGACTTTCTTCCTGAAAGGATTGGACATGCATGTTTCTTTGAGGAGGAACACTGGAGAAGGCTGAAATCGTCTAAAATTCCGGTTGAACTTTGTTTGACATCAAACATTAGGACATTGTCCGTTCCATCAATTGATGCTCATCATTTTGTGGATTTGTATAATGCAAAACATCCTGTAGTCCTGTGTACTGATGACTCAGGTGTGTTCTCCACCAGTCTCTCCAACGAATACAAAATTGCTGCTTCTTCATTTGGCCTTGGAAGGAAGGAGATGTTTGAGCTATCAAAGAATGCTGTTGAATTTATATTTGCGGATAACACGGCAAAAGAGGATTTAAGAAATATTTTTAGTTTAGCAGCAAATGATCTGGAGCTCTAG

Protein sequence

>Msa1264020

MTKIQDARKESEMEWCMSIPKVELHAHLNGSIRDSTLLELAKGLGDKGLIDFSQVQHVILKNDRSLSEVFKLFDVIHILTTDHATVTRITKEVVEDFASENVVYVELRTTPKKNESKGMSKRSYIEAVLEGLRSVSSVDLGFIPFSEEIKNHSNPILSVSATDDRSNENTRKKIFVRLLLSIDRRETTEAAMETVMLALEMRHFGVVGIDLSGNPAVGEWVTYLPALKFAREQGLYVTLHCGEVPNLREIHDMLDFLPERIGHACFFEEEHWRRLKSSKIPVELCLTSNIRTLSVPSIDAHHFVDLYNAKHPVVLCTDDSGVFSTSLSNEYKIAASSFGLGRKEMFELSKNAVEFIFADNTAKEDLRNIFSLAANDLEL*