AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1365040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365040 MtrunA17_Chr3g0145491 98.062 258 5 0 1 258 1 258 0.0 514
Msa1365040 MtrunA17_Chr4g0038491 73.705 251 61 3 1 250 1 247 1.17e-118 339
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365040 AT2G16595.1 59.914 232 86 4 19 249 17 242 9.35e-92 271
Msa1365040 AT2G21160.1 60.417 240 88 3 23 258 20 256 2.38e-84 253
Msa1365040 AT2G21160.2 60.479 167 59 3 23 185 20 183 4.25e-66 204

Find 101 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACATTTCGCAATATTCTT+AGG 0.152346 tig0018197:+99657 None:intergenic
TTTGAATGTTGTTGCAATTA+AGG 0.192749 tig0018197:-99380 Msa1365040:CDS
GAAATTACTGCTACTACTTC+TGG 0.218094 tig0018197:-100853 None:intergenic
ATTAGCAAGGTTGAAAATTT+AGG 0.246743 tig0018197:-97291 Msa1365040:three_prime_UTR
TTGCTGACAGAAAATATATA+TGG 0.249255 tig0018197:+98122 None:intergenic
CTACTTGGGCTATGGATTAA+TGG 0.301378 tig0018197:-97823 Msa1365040:CDS
TGATGTGTGTGTCGTCGATT+AGG 0.302311 tig0018197:+100611 None:intergenic
ATCGCCTCCCCTTTCCTTCA+AGG 0.306997 tig0018197:-100522 Msa1365040:intron
TTCTGTCAGCAAGTTCTTGC+AGG 0.320879 tig0018197:-98111 Msa1365040:intron
GTGCAATTCCAAGAGTAAAA+AGG 0.335460 tig0018197:+97854 None:intergenic
ACAGCGATGGTGTCAATTCC+TGG 0.351993 tig0018197:+99684 None:intergenic
TGTTCAAAACCTTACTGTTC+AGG 0.353087 tig0018197:-99323 Msa1365040:intron
TACCAAAACACTTTCTATAA+TGG 0.355170 tig0018197:-97928 Msa1365040:CDS
TTCTTATCCTACTTGGGCTA+TGG 0.361313 tig0018197:-97831 Msa1365040:CDS
TTATCCAAGAAAATACTAAC+AGG 0.370456 tig0018197:-97172 Msa1365040:three_prime_UTR
TGCCATTATAGAAAGTGTTT+TGG 0.377178 tig0018197:+97926 None:intergenic
TACCATATAAGAGAGATTAA+TGG 0.379591 tig0018197:+97046 None:intergenic
TCAAATACATAACCTGTCTA+AGG 0.380877 tig0018197:-97800 Msa1365040:intron
AATTGCAACAACATTCAAAC+TGG 0.382031 tig0018197:+99384 None:intergenic
TTGCTTCCTCAGTCTGTCTC+TGG 0.400520 tig0018197:-100651 Msa1365040:five_prime_UTR
CTCCGTGCCATCTTCAGTTC+AGG 0.401803 tig0018197:-98153 Msa1365040:CDS
ATTGCACTTCTTATCCTACT+TGG 0.405932 tig0018197:-97838 Msa1365040:CDS
TACATTTCGCAATATTCTTA+GGG 0.406141 tig0018197:+99658 None:intergenic
TGTTCTTCTTGCTAGTTGCT+AGG 0.413568 tig0018197:-99818 Msa1365040:intron
ACTTGTTGATGAGCGCCATA+TGG 0.413586 tig0018197:+100574 None:intergenic
CCTGGACCATTTGATCTTGT+GGG 0.422904 tig0018197:-97982 Msa1365040:CDS
CTTAGTCCCAACTTCAACCT+TGG 0.428972 tig0018197:+97662 None:intergenic
TAAGTAGAACAAAAGGAAGT+AGG 0.430013 tig0018197:-100827 Msa1365040:five_prime_UTR
TTTATTTGATGTAGTGGTAA+AGG 0.436615 tig0018197:-99557 Msa1365040:intron
AGATCTTCCAAGGTTGAAGT+TGG 0.438581 tig0018197:-97669 Msa1365040:CDS
GCCTGGACCATTTGATCTTG+TGG 0.445173 tig0018197:-97983 Msa1365040:CDS
TTCAATGGATGAATGGCTTC+AGG 0.447599 tig0018197:-97628 Msa1365040:intron
GATGTGTGTGTCGTCGATTA+GGG 0.448493 tig0018197:+100612 None:intergenic
GGGACCTTCCCTTCTGCCCC+AGG 0.448790 tig0018197:-99702 Msa1365040:CDS
CTAGACTAGACTGACCTTGA+AGG 0.451490 tig0018197:+100508 None:intergenic
TAAGACTACAGATGCTTCAA+TGG 0.461758 tig0018197:-97643 Msa1365040:CDS
AACATTGCATTACCTTAGAC+AGG 0.473431 tig0018197:+97788 None:intergenic
ACCATTGAAGTTGTTGAGCC+TGG 0.474828 tig0018197:-97904 Msa1365040:CDS
TAAGAGAGATTAATGGCGAC+AGG 0.474982 tig0018197:+97053 None:intergenic
GATCTTCCAAGGTTGAAGTT+GGG 0.475146 tig0018197:-97668 Msa1365040:CDS
TGCTGACAGAAAATATATAT+GGG 0.475416 tig0018197:+98123 None:intergenic
CAGATGCTTCAATGGATGAA+TGG 0.477366 tig0018197:-97635 Msa1365040:CDS
AAATTACTGCTACTACTTCT+GGG 0.478522 tig0018197:-100852 None:intergenic
GGGAGGCGATGAGGAAGAGA+AGG 0.478728 tig0018197:+100535 None:intergenic
ACAGAATTCTGTAATAGAAT+AGG 0.479946 tig0018197:-97325 Msa1365040:three_prime_UTR
TTATTTGATGTAGTGGTAAA+GGG 0.480002 tig0018197:-99556 Msa1365040:intron
TTGCACTTCTTATCCTACTT+GGG 0.486809 tig0018197:-97837 Msa1365040:CDS
GTGAATGACATCGGCATTGT+TGG 0.490588 tig0018197:-99759 Msa1365040:CDS
GATGAAGCTGTGGAGAATAC+TGG 0.499870 tig0018197:-99786 Msa1365040:CDS
TAGACTGACCTTGAAGGAAA+GGG 0.501674 tig0018197:+100514 None:intergenic
CTGGGTATAAGTAGAACAAA+AGG 0.503283 tig0018197:-100834 Msa1365040:five_prime_UTR
CAGCGATGGTGTCAATTCCT+GGG 0.503598 tig0018197:+99685 None:intergenic
TTAAGATACAACACAAAGAC+TGG 0.514433 tig0018197:+97259 None:intergenic
GGCGATGAGGAAGAGAAGGA+AGG 0.515372 tig0018197:+100539 None:intergenic
GTGTCAATTCCTGGGGCAGA+AGG 0.517036 tig0018197:+99693 None:intergenic
ATGGTGCCCACAAGATCAAA+TGG 0.518920 tig0018197:+97976 None:intergenic
GGTTGGAGAGAGAATTAGCA+AGG 0.524386 tig0018197:-97304 Msa1365040:three_prime_UTR
CAATTTCTACCTGAACAGTA+AGG 0.525707 tig0018197:+99314 None:intergenic
GAAGAGGCAGAGCTACTTGT+CGG 0.527005 tig0018197:-99529 Msa1365040:CDS
AAACCCTAGCTAGACCCATA+TGG 0.530084 tig0018197:-100589 Msa1365040:exon
AGTGGTAAAGGGTGGTGAAG+AGG 0.534718 tig0018197:-99545 Msa1365040:CDS
CTAGACTGACCTTGAAGGAA+AGG 0.535388 tig0018197:+100513 None:intergenic
CTTGTTGATGAGCGCCATAT+GGG 0.538244 tig0018197:+100575 None:intergenic
ACCAGGCTCAACAACTTCAA+TGG 0.539719 tig0018197:+97903 None:intergenic
CCCACAAGATCAAATGGTCC+AGG 0.542064 tig0018197:+97982 None:intergenic
AGCGCCATATGGGTCTAGCT+AGG 0.547903 tig0018197:+100585 None:intergenic
AAAGTAGCCTGAACTGAAGA+TGG 0.549379 tig0018197:+98146 None:intergenic
ACAAGAAGACGATGATCGTA+TGG 0.565759 tig0018197:+99343 None:intergenic
AATTCCTGGGGCAGAAGGGA+AGG 0.572912 tig0018197:+99698 None:intergenic
AGAATTCTGTACTCCGTGGA+AGG 0.575537 tig0018197:+97338 None:intergenic
GATGCTCAAGACTTTGCTGA+TGG 0.576315 tig0018197:-99723 Msa1365040:CDS
GAATTCTGTACTCCGTGGAA+GGG 0.578917 tig0018197:+97339 None:intergenic
ATAGTAACATTGAAGTCAAG+TGG 0.581218 tig0018197:-100785 Msa1365040:five_prime_UTR
AATTCTGTAATAGAATAGGT+TGG 0.582113 tig0018197:-97321 Msa1365040:three_prime_UTR
ATGCTCAAGACTTTGCTGAT+GGG 0.587042 tig0018197:-99722 Msa1365040:CDS
TCATACAACTTTGAACCGCA+TGG 0.594719 tig0018197:-97132 Msa1365040:three_prime_UTR
GCGCCATATGGGTCTAGCTA+GGG 0.595420 tig0018197:+100586 None:intergenic
CATTAATCCATAGCCCAAGT+AGG 0.597505 tig0018197:+97824 None:intergenic
TGAGGAAGCAACGTGTGACT+CGG 0.601583 tig0018197:+100663 None:intergenic
ATTGATCAAAACGACGACAT+TGG 0.604383 tig0018197:-100752 Msa1365040:five_prime_UTR
AGCCTGAACTGAAGATGGCA+CGG 0.612528 tig0018197:+98151 None:intergenic
TGTCAATTCCTGGGGCAGAA+GGG 0.617861 tig0018197:+99694 None:intergenic
GAAGGAAAGGGGAGGCGATG+AGG 0.618127 tig0018197:+100526 None:intergenic
GAAGACGATGATCGTATGGA+AGG 0.621122 tig0018197:+99347 None:intergenic
AGACTGACCTTGAAGGAAAG+GGG 0.632169 tig0018197:+100515 None:intergenic
AGCCACACAAGACCCTTCCA+CGG 0.636372 tig0018197:-97351 Msa1365040:three_prime_UTR
ATTCTTAGGGAACACAGCGA+TGG 0.640325 tig0018197:+99671 None:intergenic
TAAAGCTCGACTCAGTGCAA+AGG 0.644737 tig0018197:+97192 None:intergenic
TTGGTCTATCTCGTATACAA+TGG 0.646480 tig0018197:+97957 None:intergenic
CTCCGTGGAAGGGTCTTGTG+TGG 0.647246 tig0018197:+97349 None:intergenic
GTGTCAGTCAGATGAAGCTG+TGG 0.648091 tig0018197:-99796 Msa1365040:CDS
TCCATACTGAATAAAACACC+AGG 0.656320 tig0018197:+97886 None:intergenic
AGCGATGGTGTCAATTCCTG+GGG 0.656423 tig0018197:+99686 None:intergenic
ACTGGTGAAGTGAATGACAT+CGG 0.672577 tig0018197:-99768 Msa1365040:CDS
TTTGATGTAGTGGTAAAGGG+TGG 0.674392 tig0018197:-99553 Msa1365040:intron
TTACAGAATTCTGTACTCCG+TGG 0.684191 tig0018197:+97334 None:intergenic
AAGAGAGATTAATGGCGACA+GGG 0.688273 tig0018197:+97054 None:intergenic
TATCCAAGAAAATACTAACA+GGG 0.701098 tig0018197:-97171 Msa1365040:three_prime_UTR
TTCAAACCAGAGACAGACTG+AGG 0.703428 tig0018197:+100645 None:intergenic
CTGACCTTGAAGGAAAGGGG+AGG 0.710204 tig0018197:+100518 None:intergenic
CATAATCTGACAAAACCATG+CGG 0.760856 tig0018197:+97117 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAAAATAGAGTAAAA+AGG + tig0018197:97476-97495 None:intergenic 10.0%
!! GTAAATAAATAGATTTAATT+TGG + tig0018197:98621-98640 None:intergenic 10.0%
!!! ATTTTGATTTTGATTAAATT+TGG - tig0018197:100817-100836 Msa1365040:five_prime_UTR 10.0%
!!! GTTGACTTTTTTTTTTTTTT+TGG - tig0018197:97551-97570 Msa1365040:intron 15.0%
!!! AATAGTATATTGATTATTAC+AGG + tig0018197:98721-98740 None:intergenic 15.0%
!! AAAATAAAAACTAAAGAAAC+AGG - tig0018197:99209-99228 Msa1365040:intron 15.0%
!! AAATAAAAACTAAAGAAACA+GGG - tig0018197:99210-99229 Msa1365040:intron 15.0%
!!! TTTTCTATTTTTTTGGAGTA+GGG - tig0018197:97528-97547 Msa1365040:intron 20.0%
!! TTTCTATTGCTTTCAATTTA+CGG - tig0018197:97635-97654 Msa1365040:CDS 20.0%
!!! TTTCTAGTTGACTTAATAAA+TGG + tig0018197:97848-97867 None:intergenic 20.0%
!!! ATTTAATGGATATGAAGAAA+AGG + tig0018197:97998-98017 None:intergenic 20.0%
!! AGATCTTTCTATATAAGATA+AGG - tig0018197:98263-98282 Msa1365040:intron 20.0%
!!! ATAGATTTAATTTGGAGATT+TGG + tig0018197:98613-98632 None:intergenic 20.0%
!!! ACTAAAGTATTTGCTATATA+TGG - tig0018197:98796-98815 Msa1365040:intron 20.0%
!!! CTAAAGTATTTGCTATATAT+GGG - tig0018197:98797-98816 Msa1365040:intron 20.0%
!!! CTTATTTTCTAATCAAATCA+AGG - tig0018197:98889-98908 Msa1365040:intron 20.0%
!!! ACAATATATTCTTTTAAGAC+TGG - tig0018197:99082-99101 Msa1365040:intron 20.0%
!!! CAATATATTCTTTTAAGACT+GGG - tig0018197:99083-99102 Msa1365040:intron 20.0%
!! AATAAAAACTAAAGAAACAG+GGG - tig0018197:99211-99230 Msa1365040:intron 20.0%
!! TTATACATGTGTGTTAAAAT+GGG - tig0018197:99341-99360 Msa1365040:CDS 20.0%
!! CAAACTTATAGTTAATATGT+TGG - tig0018197:99546-99565 Msa1365040:CDS 20.0%
!!! GTAATACTTTTTTTTGTGTA+AGG + tig0018197:99682-99701 None:intergenic 20.0%
!! TTGACAAATCAATAATGTAA+AGG + tig0018197:100422-100441 None:intergenic 20.0%
!!! CAGATTATGTTAATTTTATC+TGG - tig0018197:100794-100813 Msa1365040:five_prime_UTR 20.0%
! AAGAAAGAAAATGATGATAG+AGG + tig0018197:97434-97453 None:intergenic 25.0%
!!! GTTCTGCTTTTCTATTTTTT+TGG - tig0018197:97521-97540 Msa1365040:intron 25.0%
!!! CTTTTCTATTTTTTTGGAGT+AGG - tig0018197:97527-97546 Msa1365040:intron 25.0%
!!! TTTCTATTTTTTTGGAGTAG+GGG - tig0018197:97529-97548 Msa1365040:intron 25.0%
! ACAAAACTAATCAACTACAA+AGG + tig0018197:97959-97978 None:intergenic 25.0%
! TACATTTCGCAATATTCTTA+GGG + tig0018197:98242-98261 None:intergenic 25.0%
! TTACATTTCGCAATATTCTT+AGG + tig0018197:98243-98262 None:intergenic 25.0%
! AAATTAACACAAGATTGTCA+GGG + tig0018197:98313-98332 None:intergenic 25.0%
! AAAATTAACACAAGATTGTC+AGG + tig0018197:98314-98333 None:intergenic 25.0%
!!! TTGTTGTTTATTTGATGTAG+TGG - tig0018197:98334-98353 Msa1365040:intron 25.0%
! TTTATTTGATGTAGTGGTAA+AGG - tig0018197:98340-98359 Msa1365040:intron 25.0%
! TTATTTGATGTAGTGGTAAA+GGG - tig0018197:98341-98360 Msa1365040:intron 25.0%
! TTTGAATGTTGTTGCAATTA+AGG - tig0018197:98517-98536 Msa1365040:intron 25.0%
! TGTTTCAATCAAAGTTATCA+TGG + tig0018197:98669-98688 None:intergenic 25.0%
!!! TTAATCTCTGAAATGATTTG+TGG - tig0018197:98745-98764 Msa1365040:intron 25.0%
! TGTGCATATCTTTGTATAAA+TGG + tig0018197:99065-99084 None:intergenic 25.0%
! ATGACAGTAAAATATCATCA+AGG - tig0018197:99173-99192 Msa1365040:intron 25.0%
! TGACAGTAAAATATCATCAA+GGG - tig0018197:99174-99193 Msa1365040:intron 25.0%
!!! CATTTTAACACACATGTATA+AGG + tig0018197:99342-99361 None:intergenic 25.0%
! CTTATACATGTGTGTTAAAA+TGG - tig0018197:99340-99359 Msa1365040:CDS 25.0%
! TATAAGTTTGACAGAGTTAT+TGG + tig0018197:99536-99555 None:intergenic 25.0%
! TGCTGACAGAAAATATATAT+GGG + tig0018197:99777-99796 None:intergenic 25.0%
! TTGCTGACAGAAAATATATA+TGG + tig0018197:99778-99797 None:intergenic 25.0%
!!! TTATAGAAAGTGTTTTGGTA+TGG + tig0018197:99969-99988 None:intergenic 25.0%
! TACCAAAACACTTTCTATAA+TGG - tig0018197:99969-99988 Msa1365040:intron 25.0%
! TACACAAATCAGTATGAAAA+GGG + tig0018197:100382-100401 None:intergenic 25.0%
! ATACACAAATCAGTATGAAA+AGG + tig0018197:100383-100402 None:intergenic 25.0%
! ACAGAATTCTGTAATAGAAT+AGG - tig0018197:100572-100591 Msa1365040:CDS 25.0%
! AATTCTGTAATAGAATAGGT+TGG - tig0018197:100576-100595 Msa1365040:exon 25.0%
! ATTAGCAAGGTTGAAAATTT+AGG - tig0018197:100606-100625 Msa1365040:five_prime_UTR 25.0%
! TTATCCAAGAAAATACTAAC+AGG - tig0018197:100725-100744 Msa1365040:five_prime_UTR 25.0%
! TATCCAAGAAAATACTAACA+GGG - tig0018197:100726-100745 Msa1365040:five_prime_UTR 25.0%
TAAGTAGAACAAAAGGAAGT+AGG - tig0018197:97070-97089 Msa1365040:three_prime_UTR 30.0%
ATAGTAACATTGAAGTCAAG+TGG - tig0018197:97112-97131 Msa1365040:three_prime_UTR 30.0%
ATGATGATAGAGGAAGAAAA+GGG + tig0018197:97424-97443 None:intergenic 30.0%
AATGATGATAGAGGAAGAAA+AGG + tig0018197:97425-97444 None:intergenic 30.0%
TATCAGTTAGTTATGATGCA+TGG - tig0018197:97666-97685 Msa1365040:CDS 30.0%
! ATTGATTTCCACATCAGTTA+AGG + tig0018197:97773-97792 None:intergenic 30.0%
TGAGCATTAAAGTTGTAGTA+AGG + tig0018197:97811-97830 None:intergenic 30.0%
TGTAATCCAAATACTGGAAA+AGG + tig0018197:97880-97899 None:intergenic 30.0%
AATGGATATGAAGAAAAGGA+TGG + tig0018197:97994-98013 None:intergenic 30.0%
! GTGAGAAGTGTGTAATTTAA+TGG + tig0018197:98012-98031 None:intergenic 30.0%
AATTAACACAAGATTGTCAG+GGG + tig0018197:98312-98331 None:intergenic 30.0%
TGTCACAAGACACAAATAAA+AGG + tig0018197:98447-98466 None:intergenic 30.0%
!! TAACACTCGATTTTGTTGTA+TGG - tig0018197:98473-98492 Msa1365040:intron 30.0%
TTGTTGTATGGATCAATTTC+AGG - tig0018197:98485-98504 Msa1365040:intron 30.0%
TGTTGTATGGATCAATTTCA+GGG - tig0018197:98486-98505 Msa1365040:intron 30.0%
AATTGCAACAACATTCAAAC+TGG + tig0018197:98516-98535 None:intergenic 30.0%
TATAGCAAATACTTTAGTGC+AGG + tig0018197:98794-98813 None:intergenic 30.0%
TAATTGCTTTACCGTATGTT+TGG - tig0018197:98838-98857 Msa1365040:intron 30.0%
AAATCTTCCATCCAAACATA+CGG + tig0018197:98852-98871 None:intergenic 30.0%
! TATGTTTGGATGGAAGATTT+TGG - tig0018197:98852-98871 Msa1365040:intron 30.0%
! AATGGAAGAGTATGTTCATA+TGG + tig0018197:99047-99066 None:intergenic 30.0%
GGAATCTGAATGAAATAAGA+GGG + tig0018197:99400-99419 None:intergenic 30.0%
ATTCCCTATTCCATGTTATA+TGG - tig0018197:99415-99434 Msa1365040:intron 30.0%
GTACCATATAACATGGAATA+GGG + tig0018197:99421-99440 None:intergenic 30.0%
AGTACCATATAACATGGAAT+AGG + tig0018197:99422-99441 None:intergenic 30.0%
! AATCAGAGTACCATATAACA+TGG + tig0018197:99428-99447 None:intergenic 30.0%
TATGTATGTACCAAATGGTT+GGG + tig0018197:99469-99488 None:intergenic 30.0%
AGATCTATGTATGTACCAAA+TGG + tig0018197:99474-99493 None:intergenic 30.0%
ATAGATCTCTAAGTTCATCT+GGG - tig0018197:99486-99505 Msa1365040:intron 30.0%
! GTGTTGTGTTATAATTTTGC+AGG - tig0018197:99708-99727 Msa1365040:CDS 30.0%
! ATTTTGCAGGTTTTCAACAA+TGG - tig0018197:99721-99740 Msa1365040:CDS 30.0%
AGGCATGATAAATATAGAAG+GGG + tig0018197:99872-99891 None:intergenic 30.0%
CAGGCATGATAAATATAGAA+GGG + tig0018197:99873-99892 None:intergenic 30.0%
TCAGGCATGATAAATATAGA+AGG + tig0018197:99874-99893 None:intergenic 30.0%
!!! TGCCATTATAGAAAGTGTTT+TGG + tig0018197:99974-99993 None:intergenic 30.0%
! TCTGTTTTCCTTTTTACTCT+TGG - tig0018197:100035-100054 Msa1365040:intron 30.0%
TCAAATACATAACCTGTCTA+AGG - tig0018197:100097-100116 Msa1365040:intron 30.0%
AATAATACTCACGTGGTAAA+TGG + tig0018197:100157-100176 None:intergenic 30.0%
ATATGCAAATAATACTCACG+TGG + tig0018197:100164-100183 None:intergenic 30.0%
GAAAACAAAAAGATCTTCCA+AGG - tig0018197:100218-100237 Msa1365040:intron 30.0%
ACACAAATCAGTATGAAAAG+GGG + tig0018197:100381-100400 None:intergenic 30.0%
GGATATCAAAATACAAGGTT+AGG + tig0018197:100454-100473 None:intergenic 30.0%
!!! AACCTTGTATTTTGATATCC+AGG - tig0018197:100454-100473 Msa1365040:intron 30.0%
!!! ACCTTGTATTTTGATATCCA+GGG - tig0018197:100455-100474 Msa1365040:intron 30.0%
TTAAGATACAACACAAAGAC+TGG + tig0018197:100641-100660 None:intergenic 30.0%
CTGGGTATAAGTAGAACAAA+AGG - tig0018197:97063-97082 Msa1365040:three_prime_UTR 35.0%
ATTGATCAAAACGACGACAT+TGG - tig0018197:97145-97164 Msa1365040:three_prime_UTR 35.0%
!!! TTCTTCTTGTCGTTTTCTTC+AGG + tig0018197:97181-97200 None:intergenic 35.0%
TGATGATAGAGGAAGAAAAG+GGG + tig0018197:97423-97442 None:intergenic 35.0%
AGTTAGTTATGATGCATGGA+TGG - tig0018197:97670-97689 Msa1365040:CDS 35.0%
! AAATACTGGAAAAGGTGTGA+GGG + tig0018197:97872-97891 None:intergenic 35.0%
! AACGTATGATCTGGAATCAA+CGG - tig0018197:97926-97945 Msa1365040:CDS 35.0%
ACAACAAAATCGAGTGTTAG+AGG + tig0018197:98472-98491 None:intergenic 35.0%
TGTTCAAAACCTTACTGTTC+AGG - tig0018197:98574-98593 Msa1365040:intron 35.0%
CAATTTCTACCTGAACAGTA+AGG + tig0018197:98586-98605 None:intergenic 35.0%
CTTACTGTTCAGGTAGAAAT+TGG - tig0018197:98584-98603 Msa1365040:intron 35.0%
! GAAGAGTATGTTCATATGGA+GGG + tig0018197:99043-99062 None:intergenic 35.0%
!!! CAAGGTTTTGCTGTTTTAGT+AGG - tig0018197:99116-99135 Msa1365040:intron 35.0%
ATATTGACAAAGTATGCACC+AGG - tig0018197:99149-99168 Msa1365040:intron 35.0%
TATTGACAAAGTATGCACCA+GGG - tig0018197:99150-99169 Msa1365040:intron 35.0%
! TGATATTTTACTGTCATCCC+TGG + tig0018197:99170-99189 None:intergenic 35.0%
TGAATAGCAACTCAAGGAAT+TGG + tig0018197:99260-99279 None:intergenic 35.0%
! AGTTGCTATTCACCATCTAT+GGG - tig0018197:99268-99287 Msa1365040:intron 35.0%
TAAGGATTGTTAGATGTACG+AGG + tig0018197:99324-99343 None:intergenic 35.0%
TGTGTGTTAAAATGGGTATG+AGG - tig0018197:99348-99367 Msa1365040:CDS 35.0%
TCTGAATGAAATAAGAGGGA+AGG + tig0018197:99396-99415 None:intergenic 35.0%
GGGAATCTGAATGAAATAAG+AGG + tig0018197:99401-99420 None:intergenic 35.0%
CTATGTATGTACCAAATGGT+TGG + tig0018197:99470-99489 None:intergenic 35.0%
CATAGATCTCTAAGTTCATC+TGG - tig0018197:99485-99504 Msa1365040:intron 35.0%
!! CTTGCTTTTGCTAGTTCTTT+TGG - tig0018197:99574-99593 Msa1365040:intron 35.0%
TTGGATGAATTAGTCGATTG+TGG - tig0018197:99593-99612 Msa1365040:intron 35.0%
TTGGTCTATCTCGTATACAA+TGG + tig0018197:99943-99962 None:intergenic 35.0%
!!! AAGTGTTTTGGTATGGATGT+TGG + tig0018197:99962-99981 None:intergenic 35.0%
TCCATACTGAATAAAACACC+AGG + tig0018197:100014-100033 None:intergenic 35.0%
GTGCAATTCCAAGAGTAAAA+AGG + tig0018197:100046-100065 None:intergenic 35.0%
ATTGCACTTCTTATCCTACT+TGG - tig0018197:100059-100078 Msa1365040:intron 35.0%
TTGCACTTCTTATCCTACTT+GGG - tig0018197:100060-100079 Msa1365040:intron 35.0%
AACATTGCATTACCTTAGAC+AGG + tig0018197:100112-100131 None:intergenic 35.0%
TAAGACTACAGATGCTTCAA+TGG - tig0018197:100254-100273 Msa1365040:intron 35.0%
ACAAATCAGTATGAAAAGGG+GGG + tig0018197:100379-100398 None:intergenic 35.0%
CACAAATCAGTATGAAAAGG+GGG + tig0018197:100380-100399 None:intergenic 35.0%
TCCCTGGATATCAAAATACA+AGG + tig0018197:100459-100478 None:intergenic 35.0%
! GATCCCTGTTAGTATTTTCT+TGG + tig0018197:100732-100751 None:intergenic 35.0%
CATAATCTGACAAAACCATG+CGG + tig0018197:100783-100802 None:intergenic 35.0%
TAGACTGACCTTGAAGGAAA+GGG + tig0018197:97386-97405 None:intergenic 40.0%
TGTGCAATCCTTAACTGATG+TGG - tig0018197:97762-97781 Msa1365040:intron 40.0%
! AATACTGGAAAAGGTGTGAG+GGG + tig0018197:97871-97890 None:intergenic 40.0%
! CAAATACTGGAAAAGGTGTG+AGG + tig0018197:97873-97892 None:intergenic 40.0%
! CTCACACCTTTTCCAGTATT+TGG - tig0018197:97871-97890 Msa1365040:CDS 40.0%
GCAGTGTGTAATCCAAATAC+TGG + tig0018197:97886-97905 None:intergenic 40.0%
ACTCGTCTTAACGTATGATC+TGG - tig0018197:97917-97936 Msa1365040:CDS 40.0%
TGTTCTTCTTGCTAGTTGCT+AGG - tig0018197:98079-98098 Msa1365040:intron 40.0%
ACTGGTGAAGTGAATGACAT+CGG - tig0018197:98129-98148 Msa1365040:CDS 40.0%
ATGCTCAAGACTTTGCTGAT+GGG - tig0018197:98175-98194 Msa1365040:intron 40.0%
TTTGATGTAGTGGTAAAGGG+TGG - tig0018197:98344-98363 Msa1365040:intron 40.0%
ACAAGAAGACGATGATCGTA+TGG + tig0018197:98557-98576 None:intergenic 40.0%
TGCTTTACCGTATGTTTGGA+TGG - tig0018197:98842-98861 Msa1365040:intron 40.0%
! GTTTGGATGGAAGATTTTGG+AGG - tig0018197:98855-98874 Msa1365040:intron 40.0%
GGAGAGCTAAGTTCATATCA+TGG + tig0018197:99016-99035 None:intergenic 40.0%
TATGTTCATATGGAGGGTTC+TGG + tig0018197:99037-99056 None:intergenic 40.0%
! GGAAGAGTATGTTCATATGG+AGG + tig0018197:99044-99063 None:intergenic 40.0%
AGATGGTGAATAGCAACTCA+AGG + tig0018197:99266-99285 None:intergenic 40.0%
! GAGTTGCTATTCACCATCTA+TGG - tig0018197:99267-99286 Msa1365040:intron 40.0%
AAAGTAGCCTGAACTGAAGA+TGG + tig0018197:99754-99773 None:intergenic 40.0%
!! CATCAGCTCTGGAAAAAGTA+AGG + tig0018197:99817-99836 None:intergenic 40.0%
ATGCTTCAAATGTCTGCATG+AGG - tig0018197:99834-99853 Msa1365040:intron 40.0%
CACAGCAAAAGAAAATGGTC+AGG + tig0018197:99892-99911 None:intergenic 40.0%
!! GCCTGGTGTTTTATTCAGTA+TGG - tig0018197:100010-100029 Msa1365040:intron 40.0%
TTCTTATCCTACTTGGGCTA+TGG - tig0018197:100066-100085 Msa1365040:intron 40.0%
CATTAATCCATAGCCCAAGT+AGG + tig0018197:100076-100095 None:intergenic 40.0%
! CTACTTGGGCTATGGATTAA+TGG - tig0018197:100074-100093 Msa1365040:intron 40.0%
AGATCTTCCAAGGTTGAAGT+TGG - tig0018197:100228-100247 Msa1365040:intron 40.0%
GATCTTCCAAGGTTGAAGTT+GGG - tig0018197:100229-100248 Msa1365040:intron 40.0%
CAGATGCTTCAATGGATGAA+TGG - tig0018197:100262-100281 Msa1365040:intron 40.0%
TTCAATGGATGAATGGCTTC+AGG - tig0018197:100269-100288 Msa1365040:intron 40.0%
TTACAGAATTCTGTACTCCG+TGG + tig0018197:100566-100585 None:intergenic 40.0%
TCATACAACTTTGAACCGCA+TGG - tig0018197:100765-100784 Msa1365040:five_prime_UTR 40.0%
AAGAGAGATTAATGGCGACA+GGG + tig0018197:100846-100865 None:intergenic 40.0%
TAAGAGAGATTAATGGCGAC+AGG + tig0018197:100847-100866 None:intergenic 40.0%
TTCAAACCAGAGACAGACTG+AGG + tig0018197:97255-97274 None:intergenic 45.0%
! GATGTGTGTGTCGTCGATTA+GGG + tig0018197:97288-97307 None:intergenic 45.0%
! TGATGTGTGTGTCGTCGATT+AGG + tig0018197:97289-97308 None:intergenic 45.0%
AAACCCTAGCTAGACCCATA+TGG - tig0018197:97308-97327 Msa1365040:three_prime_UTR 45.0%
! CTTGTTGATGAGCGCCATAT+GGG + tig0018197:97325-97344 None:intergenic 45.0%
! ACTTGTTGATGAGCGCCATA+TGG + tig0018197:97326-97345 None:intergenic 45.0%
AGACTGACCTTGAAGGAAAG+GGG + tig0018197:97385-97404 None:intergenic 45.0%
CTAGACTGACCTTGAAGGAA+AGG + tig0018197:97387-97406 None:intergenic 45.0%
CTAGACTAGACTGACCTTGA+AGG + tig0018197:97392-97411 None:intergenic 45.0%
GATGAAGCTGTGGAGAATAC+TGG - tig0018197:98111-98130 Msa1365040:intron 45.0%
GTGAATGACATCGGCATTGT+TGG - tig0018197:98138-98157 Msa1365040:CDS 45.0%
GATGCTCAAGACTTTGCTGA+TGG - tig0018197:98174-98193 Msa1365040:intron 45.0%
ATTCTTAGGGAACACAGCGA+TGG + tig0018197:98229-98248 None:intergenic 45.0%
CTTGTCGGTCTGAAAAACGA+TGG - tig0018197:98383-98402 Msa1365040:intron 45.0%
GAAGACGATGATCGTATGGA+AGG + tig0018197:98553-98572 None:intergenic 45.0%
!! TGGAAGATTTTGGAGGAGAG+AGG - tig0018197:98862-98881 Msa1365040:intron 45.0%
!! AAGATTTTGGAGGAGAGAGG+AGG - tig0018197:98865-98884 Msa1365040:intron 45.0%
AACTTTGAATGCAGCAGGGT+TGG - tig0018197:99234-99253 Msa1365040:intron 45.0%
TATTCACCATCTATGGGCAC+AGG - tig0018197:99274-99293 Msa1365040:intron 45.0%
AAACATCCTGTGCCCATAGA+TGG + tig0018197:99283-99302 None:intergenic 45.0%
GGGTATGAGGATGATTCTCT+TGG - tig0018197:99361-99380 Msa1365040:CDS 45.0%
TTCGATGATGCCCAACCATT+TGG - tig0018197:99456-99475 Msa1365040:intron 45.0%
TTCTGTCAGCAAGTTCTTGC+AGG - tig0018197:99786-99805 Msa1365040:CDS 45.0%
! GACATTTGAAGCATCAGCTC+TGG + tig0018197:99828-99847 None:intergenic 45.0%
GGCTGCACAGCAAAAGAAAA+TGG + tig0018197:99897-99916 None:intergenic 45.0%
!! TTTTCTTTTGCTGTGCAGCC+TGG - tig0018197:99897-99916 Msa1365040:intron 45.0%
CCTGGACCATTTGATCTTGT+GGG - tig0018197:99915-99934 Msa1365040:intron 45.0%
ATGGTGCCCACAAGATCAAA+TGG + tig0018197:99924-99943 None:intergenic 45.0%
ACCATTGAAGTTGTTGAGCC+TGG - tig0018197:99993-100012 Msa1365040:intron 45.0%
ACCAGGCTCAACAACTTCAA+TGG + tig0018197:99997-100016 None:intergenic 45.0%
CTTAGTCCCAACTTCAACCT+TGG + tig0018197:100238-100257 None:intergenic 45.0%
ACTGAGTATATGCAGTTCCC+TGG + tig0018197:100475-100494 None:intergenic 45.0%
GAATTCTGTACTCCGTGGAA+GGG + tig0018197:100561-100580 None:intergenic 45.0%
AGAATTCTGTACTCCGTGGA+AGG + tig0018197:100562-100581 None:intergenic 45.0%
GGTTGGAGAGAGAATTAGCA+AGG - tig0018197:100593-100612 Msa1365040:five_prime_UTR 45.0%
TAAAGCTCGACTCAGTGCAA+AGG + tig0018197:100708-100727 None:intergenic 45.0%
TGAGGAAGCAACGTGTGACT+CGG + tig0018197:97237-97256 None:intergenic 50.0%
TTGCTTCCTCAGTCTGTCTC+TGG - tig0018197:97246-97265 Msa1365040:three_prime_UTR 50.0%
GTGTCAGTCAGATGAAGCTG+TGG - tig0018197:98101-98120 Msa1365040:intron 50.0%
TGTCAATTCCTGGGGCAGAA+GGG + tig0018197:98206-98225 None:intergenic 50.0%
! AGCGATGGTGTCAATTCCTG+GGG + tig0018197:98214-98233 None:intergenic 50.0%
! CAGCGATGGTGTCAATTCCT+GGG + tig0018197:98215-98234 None:intergenic 50.0%
! ACAGCGATGGTGTCAATTCC+TGG + tig0018197:98216-98235 None:intergenic 50.0%
AGTGGTAAAGGGTGGTGAAG+AGG - tig0018197:98352-98371 Msa1365040:intron 50.0%
GAAGAGGCAGAGCTACTTGT+CGG - tig0018197:98368-98387 Msa1365040:intron 50.0%
AGACTGGGTTTCAGAGCACA+AGG - tig0018197:99098-99117 Msa1365040:intron 50.0%
AGGGGAACTTTGAATGCAGC+AGG - tig0018197:99229-99248 Msa1365040:intron 50.0%
GGGGAACTTTGAATGCAGCA+GGG - tig0018197:99230-99249 Msa1365040:intron 50.0%
AGCCTGAACTGAAGATGGCA+CGG + tig0018197:99749-99768 None:intergenic 50.0%
GCCTGGACCATTTGATCTTG+TGG - tig0018197:99914-99933 Msa1365040:intron 50.0%
CCCACAAGATCAAATGGTCC+AGG + tig0018197:99918-99937 None:intergenic 50.0%
GCGCCATATGGGTCTAGCTA+GGG + tig0018197:97314-97333 None:intergenic 55.0%
AGCGCCATATGGGTCTAGCT+AGG + tig0018197:97315-97334 None:intergenic 55.0%
GGCGATGAGGAAGAGAAGGA+AGG + tig0018197:97361-97380 None:intergenic 55.0%
ATCGCCTCCCCTTTCCTTCA+AGG - tig0018197:97375-97394 Msa1365040:three_prime_UTR 55.0%
CTGACCTTGAAGGAAAGGGG+AGG + tig0018197:97382-97401 None:intergenic 55.0%
AATTCCTGGGGCAGAAGGGA+AGG + tig0018197:98202-98221 None:intergenic 55.0%
GTGTCAATTCCTGGGGCAGA+AGG + tig0018197:98207-98226 None:intergenic 55.0%
CTCCGTGCCATCTTCAGTTC+AGG - tig0018197:99744-99763 Msa1365040:CDS 55.0%
AGCCACACAAGACCCTTCCA+CGG - tig0018197:100546-100565 Msa1365040:CDS 55.0%
GGGAGGCGATGAGGAAGAGA+AGG + tig0018197:97365-97384 None:intergenic 60.0%
GAAGGAAAGGGGAGGCGATG+AGG + tig0018197:97374-97393 None:intergenic 60.0%
! CTCCGTGGAAGGGTCTTGTG+TGG + tig0018197:100551-100570 None:intergenic 60.0%
GGGACCTTCCCTTCTGCCCC+AGG - tig0018197:98195-98214 Msa1365040:intron 70.0%
Chromosome Type Strat End Strand Name
tig0018197 gene 97053 100866 97053 ID=Msa1365040;Name=Msa1365040
tig0018197 mRNA 97053 100866 97053 ID=Msa1365040-mRNA-1;Parent=Msa1365040;Name=Msa1365040-mRNA-1;_AED=0.12;_eAED=0.12;_QI=274|1|1|1|1|1|8|343|258
tig0018197 exon 97053 97443 97053 ID=Msa1365040-mRNA-1:exon:14415;Parent=Msa1365040-mRNA-1
tig0018197 exon 97629 97700 97629 ID=Msa1365040-mRNA-1:exon:14414;Parent=Msa1365040-mRNA-1
tig0018197 exon 97801 98004 97801 ID=Msa1365040-mRNA-1:exon:14413;Parent=Msa1365040-mRNA-1
tig0018197 exon 98112 98189 98112 ID=Msa1365040-mRNA-1:exon:14412;Parent=Msa1365040-mRNA-1
tig0018197 exon 99324 99412 99324 ID=Msa1365040-mRNA-1:exon:14411;Parent=Msa1365040-mRNA-1
tig0018197 exon 99515 99565 99515 ID=Msa1365040-mRNA-1:exon:14410;Parent=Msa1365040-mRNA-1
tig0018197 exon 99661 99825 99661 ID=Msa1365040-mRNA-1:exon:14409;Parent=Msa1365040-mRNA-1
tig0018197 exon 100523 100866 100523 ID=Msa1365040-mRNA-1:exon:14408;Parent=Msa1365040-mRNA-1
tig0018197 five_prime_UTR 100593 100866 100593 ID=Msa1365040-mRNA-1:five_prime_utr;Parent=Msa1365040-mRNA-1
tig0018197 CDS 100523 100592 100523 ID=Msa1365040-mRNA-1:cds;Parent=Msa1365040-mRNA-1
tig0018197 CDS 99661 99825 99661 ID=Msa1365040-mRNA-1:cds;Parent=Msa1365040-mRNA-1
tig0018197 CDS 99515 99565 99515 ID=Msa1365040-mRNA-1:cds;Parent=Msa1365040-mRNA-1
tig0018197 CDS 99324 99412 99324 ID=Msa1365040-mRNA-1:cds;Parent=Msa1365040-mRNA-1
tig0018197 CDS 98112 98189 98112 ID=Msa1365040-mRNA-1:cds;Parent=Msa1365040-mRNA-1
tig0018197 CDS 97801 98004 97801 ID=Msa1365040-mRNA-1:cds;Parent=Msa1365040-mRNA-1
tig0018197 CDS 97629 97700 97629 ID=Msa1365040-mRNA-1:cds;Parent=Msa1365040-mRNA-1
tig0018197 CDS 97396 97443 97396 ID=Msa1365040-mRNA-1:cds;Parent=Msa1365040-mRNA-1
tig0018197 three_prime_UTR 97053 97395 97053 ID=Msa1365040-mRNA-1:three_prime_utr;Parent=Msa1365040-mRNA-1
Gene Sequence

>Msa1365040

ATGGCGCTCATCAACAAGTTTTTGACTTTCTCCTTCCTTCTCTTCCTCATCGCCTCCCCTTTCCTTCAAGTTGCTAGGTGTCAGTCAGATGAAGCTGTGGAGAATACTGGTGAAGTGAATGACATCGGCATTGTTGGTGATGAAACTGATGATGCTCAAGACTTTGCTGATGGGACCTTCCCTTCTGCCCCAGGAATTGACACCATCGCTGTGTTCCCTAAGAATATTGCGAAATTGGTAAAGGGTGGTGAAGAGGCAGAGCTACTTGTCGGTCTGAAAAACGATGGGCAGTCCAGTTTGAATGTTGTTGCAATTAAGGCTAGTGTTCACCTTCCATACGATCATCGTCTTCTTGTTCAAAACCTTACTGTTCAGGTTTTCAACAATGGCTCCGTGCCATCTTCAGTTCAGGCTACTTTCCCATATATATTTTCTGTCAGCAAGTTCTTGCAGCCTGGACCATTTGATCTTGTGGGCACCATTGTATACGAGATAGACCAACATCCATACCAAAACACTTTCTATAATGGCACCATTGAAGTTGTTGAGCCTGGTGTTTTATTCAGTATGGAATCTGTTTTCCTTTTTACTCTTGGAATTGCACTTCTTATCCTACTTGGGCTATGGATTAATGGTCAAATACATAACCTGTCTAAGAAAACAAAAAGATCTTCCAAGGTTGAAGTTGGGACTAAGACTACAGATGCTTCAATGGATGAATGGCTTCAGGGAACTGCATATACTCAGTCTACGTCGAGCAAATCTAAGAAGAAGTAG

Protein sequence

>Msa1365040

MALINKFLTFSFLLFLIASPFLQVARCQSDEAVENTGEVNDIGIVGDETDDAQDFADGTFPSAPGIDTIAVFPKNIAKLVKGGEEAELLVGLKNDGQSSLNVVAIKASVHLPYDHRLLVQNLTVQVFNNGSVPSSVQATFPYIFSVSKFLQPGPFDLVGTIVYEIDQHPYQNTFYNGTIEVVEPGVLFSMESVFLFTLGIALLILLGLWINGQIHNLSKKTKRSSKVEVGTKTTDASMDEWLQGTAYTQSTSSKSKKK*