Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018520 | RHN49141.1 | 59.353 | 278 | 107 | 2 | 1 | 272 | 1 | 278 | 8.08e-114 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018520 | A0A396H9C1 | 59.353 | 278 | 107 | 2 | 1 | 272 | 1 | 278 | 3.86e-114 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0768290 | Msa1018520 | 0.828713 | 7.714471e-55 | -8.615850e-47 |
| Msa0450000 | Msa1018520 | 0.809052 | 2.289358e-50 | -8.615850e-47 |
| Msa1018520 | Msa1025370 | 0.801849 | 7.415042e-49 | -8.615850e-47 |
| Msa1018520 | Msa1121480 | 0.821450 | 4.011872e-53 | -8.615850e-47 |
| Msa1018520 | Msa1121490 | 0.820794 | 5.680980e-53 | -8.615850e-47 |
| Msa1018520 | Msa1248310 | 0.829669 | 4.523368e-55 | -8.615850e-47 |
| Msa1018520 | Msa1289430 | 0.837249 | 5.810705e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018520 | MtrunA17_Chr7g0271301 | 59.353 | 278 | 107 | 2 | 1 | 272 | 1 | 278 | 7.43e-118 | 340 |
| Msa1018520 | MtrunA17_Chr1g0178241 | 50.558 | 269 | 115 | 2 | 5 | 255 | 2 | 270 | 1.99e-98 | 303 |
| Msa1018520 | MtrunA17_Chr7g0229881 | 45.349 | 258 | 113 | 2 | 5 | 256 | 2 | 237 | 1.20e-83 | 255 |
| Msa1018520 | MtrunA17_Chr5g0441151 | 48.131 | 214 | 105 | 3 | 62 | 269 | 13 | 226 | 8.13e-68 | 214 |
| Msa1018520 | MtrunA17_Chr7g0235231 | 48.876 | 178 | 88 | 1 | 98 | 272 | 40 | 217 | 1.76e-55 | 182 |
| Msa1018520 | MtrunA17_Chr5g0439091 | 64.602 | 113 | 40 | 0 | 121 | 233 | 1 | 113 | 7.23e-51 | 162 |
| Msa1018520 | MtrunA17_Chr7g0229821 | 46.622 | 148 | 73 | 1 | 5 | 146 | 2 | 149 | 1.41e-46 | 153 |
| Msa1018520 | MtrunA17_Chr1g0171991 | 48.175 | 137 | 71 | 0 | 118 | 254 | 27 | 163 | 1.41e-39 | 142 |
| Msa1018520 | MtrunA17_Chr3g0081461 | 51.261 | 119 | 58 | 0 | 45 | 163 | 1 | 119 | 9.71e-38 | 129 |
| Msa1018520 | MtrunA17_Chr6g0448801 | 46.429 | 84 | 45 | 0 | 90 | 173 | 6 | 89 | 6.94e-19 | 79.3 |
| Msa1018520 | MtrunA17_Chr6g0460181 | 44.262 | 61 | 34 | 0 | 195 | 255 | 3 | 63 | 7.53e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1018520 | AT2G01050.1 | 27.381 | 168 | 118 | 1 | 87 | 254 | 95 | 258 | 4.43e-16 | 78.2 |
Find 82 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCAAGCTGTGTCTGCTTC+TGG | 0.135310 | 7_1:+38536123 | Msa1018520:CDS |
| GGCATATTAGATTTCTAAAT+AGG | 0.258600 | 7_1:-38536861 | None:intergenic |
| CAGAAGAATCTCAATATTCT+TGG | 0.271475 | 7_1:-38536450 | None:intergenic |
| AACAGAAGTTGGAAGGGTTT+TGG | 0.286737 | 7_1:+38536313 | Msa1018520:CDS |
| GAGATTCTTCTGCTGGTCTA+AGG | 0.311690 | 7_1:+38536461 | Msa1018520:CDS |
| GTCAAGCTGTGTCTGCTTCT+GGG | 0.326521 | 7_1:+38536124 | Msa1018520:CDS |
| TGAATCTCCCTCAAGAATAT+TGG | 0.353751 | 7_1:+38536538 | Msa1018520:CDS |
| GGACCCGACGGCGCCGTCTC+CGG | 0.369956 | 7_1:-38536090 | None:intergenic |
| ACTGCGCGTGTGACTGAATC+TGG | 0.377744 | 7_1:-38536500 | None:intergenic |
| CACCGAATCAAACAGCTTAC+CGG | 0.397714 | 7_1:-38536679 | None:intergenic |
| TACCTTCTTCATCTCTTCAA+TGG | 0.400010 | 7_1:-38536400 | None:intergenic |
| TCCCCGGAGACGGCGCCGTC+GGG | 0.404512 | 7_1:+38536087 | Msa1018520:CDS |
| TTTGGCCACATCTGAAGCCT+TGG | 0.415408 | 7_1:+38536331 | Msa1018520:CDS |
| TGGCTACACCGATTTGTACT+TGG | 0.422092 | 7_1:+38536052 | Msa1018520:CDS |
| CTTGCCTTCGCCTCCGCCTA+AGG | 0.427180 | 7_1:+38536155 | Msa1018520:CDS |
| ATGAAGAAGGTATGGGCATT+GGG | 0.429648 | 7_1:+38536411 | Msa1018520:CDS |
| TATGAAATCGCGTCAGGTAT+TGG | 0.437014 | 7_1:+38536576 | Msa1018520:CDS |
| CACTCATACTCCACAGCTAC+CGG | 0.441240 | 7_1:-38536729 | None:intergenic |
| ACAGCTTGACCAAACGACTT+TGG | 0.451744 | 7_1:-38536111 | None:intergenic |
| GTCCGGTAAGCTGTTTGATT+CGG | 0.453325 | 7_1:+38536677 | Msa1018520:CDS |
| TTCCCCGGAGACGGCGCCGT+CGG | 0.454071 | 7_1:+38536086 | Msa1018520:CDS |
| TTGAAGAGATGAAGAAGGTA+TGG | 0.460181 | 7_1:+38536403 | Msa1018520:CDS |
| GAAGGCTCTTAAACAGAAGT+TGG | 0.469047 | 7_1:+38536302 | Msa1018520:CDS |
| GAATATTGAGATTCTTCTGC+TGG | 0.471046 | 7_1:+38536454 | Msa1018520:CDS |
| GATGAAGAAGGTATGGGCAT+TGG | 0.471716 | 7_1:+38536410 | Msa1018520:CDS |
| GTCCATCACTCCGCTTGGCA+AGG | 0.472907 | 7_1:+38536353 | Msa1018520:CDS |
| TCTTCCTCCAATATTCTTGA+GGG | 0.483871 | 7_1:-38536545 | None:intergenic |
| TTCAGTCACACGCGCAGTTG+TGG | 0.493705 | 7_1:+38536505 | Msa1018520:CDS |
| TGCACGTATTCTCGTGGATG+TGG | 0.497796 | 7_1:+38536650 | Msa1018520:CDS |
| TTAAGAGCCTTCGATGAAAG+AGG | 0.500183 | 7_1:-38536291 | None:intergenic |
| CCGTCGGGTCCAAAGTCGTT+TGG | 0.504210 | 7_1:+38536102 | Msa1018520:CDS |
| TCCCTTGCCAAGCGGAGTGA+TGG | 0.506233 | 7_1:-38536355 | None:intergenic |
| TACGTGCATAGTGCCCAAAA+AGG | 0.506679 | 7_1:-38536635 | None:intergenic |
| GTCTTCCTCCAATATTCTTG+AGG | 0.521806 | 7_1:-38536546 | None:intergenic |
| TCGGTGGTGGTTGAGAGGGA+AGG | 0.525087 | 7_1:+38536696 | Msa1018520:CDS |
| CTCTTAAACAGAAGTTGGAA+GGG | 0.525158 | 7_1:+38536307 | Msa1018520:CDS |
| TCAGTCACACGCGCAGTTGT+GGG | 0.527895 | 7_1:+38536506 | Msa1018520:CDS |
| AGAAAAGGCCAAGTACAAAT+CGG | 0.531008 | 7_1:-38536060 | None:intergenic |
| ATCTCCCTCAAGAATATTGG+AGG | 0.531032 | 7_1:+38536541 | Msa1018520:CDS |
| TCTTCATCTCTTCAATGGAG+TGG | 0.531485 | 7_1:-38536395 | None:intergenic |
| ATGCTATATGAAATCGCGTC+AGG | 0.531520 | 7_1:+38536570 | Msa1018520:CDS |
| GAATGTCTTCGCAACCTCCA+TGG | 0.537784 | 7_1:+38536240 | Msa1018520:CDS |
| CCTTGGTCCATCACTCCGCT+TGG | 0.540129 | 7_1:+38536348 | Msa1018520:CDS |
| TTACAGTGATAACAAAATGA+TGG | 0.541024 | 7_1:-38536756 | None:intergenic |
| TCAAGCTGTGTCTGCTTCTG+GGG | 0.541192 | 7_1:+38536125 | Msa1018520:CDS |
| CTCGTGGATGTGGATATGTC+CGG | 0.543528 | 7_1:+38536660 | Msa1018520:CDS |
| GCTCTTAAACAGAAGTTGGA+AGG | 0.548838 | 7_1:+38536306 | Msa1018520:CDS |
| TCCATCACTCCGCTTGGCAA+GGG | 0.552111 | 7_1:+38536354 | Msa1018520:CDS |
| TAAGAGCCTTCGATGAAAGA+GGG | 0.558615 | 7_1:-38536290 | None:intergenic |
| TGAATATGAAGCAGAGCTCT+CGG | 0.561772 | 7_1:+38536218 | Msa1018520:CDS |
| CGGTAAGCTGTTTGATTCGG+TGG | 0.562513 | 7_1:+38536680 | Msa1018520:CDS |
| TGGTCGTGTCACAATGCCGA+AGG | 0.565830 | 7_1:+38536260 | Msa1018520:CDS |
| GTGGCTTCATCTATAGCGAA+GGG | 0.567776 | 7_1:-38536603 | None:intergenic |
| GTCTCCGGGGAAGAGAGAAA+AGG | 0.568587 | 7_1:-38536075 | None:intergenic |
| TAAGCTGTTTGATTCGGTGG+TGG | 0.577653 | 7_1:+38536683 | Msa1018520:CDS |
| TGATTCGGTGGTGGTTGAGA+GGG | 0.579153 | 7_1:+38536692 | Msa1018520:CDS |
| ACCCGACGGCGCCGTCTCCG+GGG | 0.584980 | 7_1:-38536088 | None:intergenic |
| TGTGGCTTCATCTATAGCGA+AGG | 0.586115 | 7_1:-38536604 | None:intergenic |
| ATGACCTTAGGCGGAGGCGA+AGG | 0.586594 | 7_1:-38536159 | None:intergenic |
| CTCCATTGAAGAGATGAAGA+AGG | 0.596226 | 7_1:+38536398 | Msa1018520:CDS |
| CCTCCGCCTAAGGTCATCAT+CGG | 0.598950 | 7_1:+38536165 | Msa1018520:CDS |
| TGAAGAGATGAAGAAGGTAT+GGG | 0.602341 | 7_1:+38536404 | Msa1018520:CDS |
| TTGATTCGGTGGTGGTTGAG+AGG | 0.602853 | 7_1:+38536691 | Msa1018520:CDS |
| GCACTATGCACGTATTCTCG+TGG | 0.605966 | 7_1:+38536644 | Msa1018520:CDS |
| ACTCATACTCCACAGCTACC+GGG | 0.607310 | 7_1:-38536728 | None:intergenic |
| ATGGACCAAGGCTTCAGATG+TGG | 0.617036 | 7_1:-38536336 | None:intergenic |
| GTGTCACCGATGATGACCTT+AGG | 0.619066 | 7_1:-38536171 | None:intergenic |
| GATGTTGTATATTGTTAATG+CGG | 0.621928 | 7_1:-38536809 | None:intergenic |
| TCGGCATTGTGACACGACCA+TGG | 0.637025 | 7_1:-38536257 | None:intergenic |
| CTGATTGATTCTAATGCGAA+CGG | 0.642611 | 7_1:-38536193 | None:intergenic |
| AGAGCCTTCGATGAAAGAGG+GGG | 0.644784 | 7_1:-38536288 | None:intergenic |
| ATACTCCACAGCTACCGGGA+AGG | 0.644839 | 7_1:-38536724 | None:intergenic |
| GGTCGTGTCACAATGCCGAA+GGG | 0.651280 | 7_1:+38536261 | Msa1018520:CDS |
| GGCTTCATCTATAGCGAAGG+GGG | 0.653691 | 7_1:-38536601 | None:intergenic |
| AAGAGCCTTCGATGAAAGAG+GGG | 0.655010 | 7_1:-38536289 | None:intergenic |
| CCAAACGACTTTGGACCCGA+CGG | 0.658438 | 7_1:-38536102 | None:intergenic |
| TTGAAGTATCCCTTGCCAAG+CGG | 0.659084 | 7_1:-38536363 | None:intergenic |
| TCACCGATGATGACCTTAGG+CGG | 0.662764 | 7_1:-38536168 | None:intergenic |
| TGACGCGATTTCATATAGCA+TGG | 0.666336 | 7_1:-38536568 | None:intergenic |
| CCGATGATGACCTTAGGCGG+AGG | 0.669472 | 7_1:-38536165 | None:intergenic |
| TGGCTTCATCTATAGCGAAG+GGG | 0.692611 | 7_1:-38536602 | None:intergenic |
| GCATTGTGACACGACCATGG+AGG | 0.767862 | 7_1:-38536254 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTACAGTGATAACAAAATGA+TGG | - | chr7_1:38536759-38536778 | None:intergenic | 25.0% |
| ! | GATGTTGTATATTGTTAATG+CGG | - | chr7_1:38536812-38536831 | None:intergenic | 25.0% |
| ! | TTACAGTGATAACAAAATGA+TGG | - | chr7_1:38536759-38536778 | None:intergenic | 25.0% |
| ! | GATGTTGTATATTGTTAATG+CGG | - | chr7_1:38536812-38536831 | None:intergenic | 25.0% |
| CAGAAGAATCTCAATATTCT+TGG | - | chr7_1:38536453-38536472 | None:intergenic | 30.0% | |
| !!! | GGTTTCTTCTGTTGATTTTT+TGG | - | chr7_1:38536843-38536862 | None:intergenic | 30.0% |
| CAGAAGAATCTCAATATTCT+TGG | - | chr7_1:38536453-38536472 | None:intergenic | 30.0% | |
| !!! | GGTTTCTTCTGTTGATTTTT+TGG | - | chr7_1:38536843-38536862 | None:intergenic | 30.0% |
| AGAAAAGGCCAAGTACAAAT+CGG | - | chr7_1:38536063-38536082 | None:intergenic | 35.0% | |
| ! | CTGATTGATTCTAATGCGAA+CGG | - | chr7_1:38536196-38536215 | None:intergenic | 35.0% |
| CTCTTAAACAGAAGTTGGAA+GGG | + | chr7_1:38536307-38536326 | Msa1018520:CDS | 35.0% | |
| TACCTTCTTCATCTCTTCAA+TGG | - | chr7_1:38536403-38536422 | None:intergenic | 35.0% | |
| TTGAAGAGATGAAGAAGGTA+TGG | + | chr7_1:38536403-38536422 | Msa1018520:CDS | 35.0% | |
| ! | TGAAGAGATGAAGAAGGTAT+GGG | + | chr7_1:38536404-38536423 | Msa1018520:CDS | 35.0% |
| GAATATTGAGATTCTTCTGC+TGG | + | chr7_1:38536454-38536473 | Msa1018520:CDS | 35.0% | |
| TGAATCTCCCTCAAGAATAT+TGG | + | chr7_1:38536538-38536557 | Msa1018520:CDS | 35.0% | |
| TCTTCCTCCAATATTCTTGA+GGG | - | chr7_1:38536548-38536567 | None:intergenic | 35.0% | |
| AGAAAAGGCCAAGTACAAAT+CGG | - | chr7_1:38536063-38536082 | None:intergenic | 35.0% | |
| ! | CTGATTGATTCTAATGCGAA+CGG | - | chr7_1:38536196-38536215 | None:intergenic | 35.0% |
| CTCTTAAACAGAAGTTGGAA+GGG | + | chr7_1:38536307-38536326 | Msa1018520:CDS | 35.0% | |
| TACCTTCTTCATCTCTTCAA+TGG | - | chr7_1:38536403-38536422 | None:intergenic | 35.0% | |
| TTGAAGAGATGAAGAAGGTA+TGG | + | chr7_1:38536403-38536422 | Msa1018520:CDS | 35.0% | |
| ! | TGAAGAGATGAAGAAGGTAT+GGG | + | chr7_1:38536404-38536423 | Msa1018520:CDS | 35.0% |
| GAATATTGAGATTCTTCTGC+TGG | + | chr7_1:38536454-38536473 | Msa1018520:CDS | 35.0% | |
| TGAATCTCCCTCAAGAATAT+TGG | + | chr7_1:38536538-38536557 | Msa1018520:CDS | 35.0% | |
| TCTTCCTCCAATATTCTTGA+GGG | - | chr7_1:38536548-38536567 | None:intergenic | 35.0% | |
| TGAATATGAAGCAGAGCTCT+CGG | + | chr7_1:38536218-38536237 | Msa1018520:CDS | 40.0% | |
| TAAGAGCCTTCGATGAAAGA+GGG | - | chr7_1:38536293-38536312 | None:intergenic | 40.0% | |
| TTAAGAGCCTTCGATGAAAG+AGG | - | chr7_1:38536294-38536313 | None:intergenic | 40.0% | |
| GAAGGCTCTTAAACAGAAGT+TGG | + | chr7_1:38536302-38536321 | Msa1018520:CDS | 40.0% | |
| GCTCTTAAACAGAAGTTGGA+AGG | + | chr7_1:38536306-38536325 | Msa1018520:CDS | 40.0% | |
| ! | AACAGAAGTTGGAAGGGTTT+TGG | + | chr7_1:38536313-38536332 | Msa1018520:CDS | 40.0% |
| TCTTCATCTCTTCAATGGAG+TGG | - | chr7_1:38536398-38536417 | None:intergenic | 40.0% | |
| CTCCATTGAAGAGATGAAGA+AGG | + | chr7_1:38536398-38536417 | Msa1018520:CDS | 40.0% | |
| ! | ATGAAGAAGGTATGGGCATT+GGG | + | chr7_1:38536411-38536430 | Msa1018520:CDS | 40.0% |
| !!! | TGTGACTGAATCTGGTTTTG+AGG | - | chr7_1:38536495-38536514 | None:intergenic | 40.0% |
| ATCTCCCTCAAGAATATTGG+AGG | + | chr7_1:38536541-38536560 | Msa1018520:CDS | 40.0% | |
| GTCTTCCTCCAATATTCTTG+AGG | - | chr7_1:38536549-38536568 | None:intergenic | 40.0% | |
| TGACGCGATTTCATATAGCA+TGG | - | chr7_1:38536571-38536590 | None:intergenic | 40.0% | |
| ATGCTATATGAAATCGCGTC+AGG | + | chr7_1:38536570-38536589 | Msa1018520:CDS | 40.0% | |
| TATGAAATCGCGTCAGGTAT+TGG | + | chr7_1:38536576-38536595 | Msa1018520:CDS | 40.0% | |
| TGAATATGAAGCAGAGCTCT+CGG | + | chr7_1:38536218-38536237 | Msa1018520:CDS | 40.0% | |
| TAAGAGCCTTCGATGAAAGA+GGG | - | chr7_1:38536293-38536312 | None:intergenic | 40.0% | |
| TTAAGAGCCTTCGATGAAAG+AGG | - | chr7_1:38536294-38536313 | None:intergenic | 40.0% | |
| GAAGGCTCTTAAACAGAAGT+TGG | + | chr7_1:38536302-38536321 | Msa1018520:CDS | 40.0% | |
| GCTCTTAAACAGAAGTTGGA+AGG | + | chr7_1:38536306-38536325 | Msa1018520:CDS | 40.0% | |
| ! | AACAGAAGTTGGAAGGGTTT+TGG | + | chr7_1:38536313-38536332 | Msa1018520:CDS | 40.0% |
| TCTTCATCTCTTCAATGGAG+TGG | - | chr7_1:38536398-38536417 | None:intergenic | 40.0% | |
| CTCCATTGAAGAGATGAAGA+AGG | + | chr7_1:38536398-38536417 | Msa1018520:CDS | 40.0% | |
| ! | ATGAAGAAGGTATGGGCATT+GGG | + | chr7_1:38536411-38536430 | Msa1018520:CDS | 40.0% |
| !!! | TGTGACTGAATCTGGTTTTG+AGG | - | chr7_1:38536495-38536514 | None:intergenic | 40.0% |
| ATCTCCCTCAAGAATATTGG+AGG | + | chr7_1:38536541-38536560 | Msa1018520:CDS | 40.0% | |
| GTCTTCCTCCAATATTCTTG+AGG | - | chr7_1:38536549-38536568 | None:intergenic | 40.0% | |
| TGACGCGATTTCATATAGCA+TGG | - | chr7_1:38536571-38536590 | None:intergenic | 40.0% | |
| ATGCTATATGAAATCGCGTC+AGG | + | chr7_1:38536570-38536589 | Msa1018520:CDS | 40.0% | |
| TATGAAATCGCGTCAGGTAT+TGG | + | chr7_1:38536576-38536595 | Msa1018520:CDS | 40.0% | |
| !! | TGGCTACACCGATTTGTACT+TGG | + | chr7_1:38536052-38536071 | Msa1018520:CDS | 45.0% |
| ACAGCTTGACCAAACGACTT+TGG | - | chr7_1:38536114-38536133 | None:intergenic | 45.0% | |
| AAGAGCCTTCGATGAAAGAG+GGG | - | chr7_1:38536292-38536311 | None:intergenic | 45.0% | |
| ! | TTGAAGTATCCCTTGCCAAG+CGG | - | chr7_1:38536366-38536385 | None:intergenic | 45.0% |
| ! | GATGAAGAAGGTATGGGCAT+TGG | + | chr7_1:38536410-38536429 | Msa1018520:CDS | 45.0% |
| ! | GAGATTCTTCTGCTGGTCTA+AGG | + | chr7_1:38536461-38536480 | Msa1018520:CDS | 45.0% |
| TGGCTTCATCTATAGCGAAG+GGG | - | chr7_1:38536605-38536624 | None:intergenic | 45.0% | |
| GTGGCTTCATCTATAGCGAA+GGG | - | chr7_1:38536606-38536625 | None:intergenic | 45.0% | |
| TGTGGCTTCATCTATAGCGA+AGG | - | chr7_1:38536607-38536626 | None:intergenic | 45.0% | |
| TACGTGCATAGTGCCCAAAA+AGG | - | chr7_1:38536638-38536657 | None:intergenic | 45.0% | |
| GTCCGGTAAGCTGTTTGATT+CGG | + | chr7_1:38536677-38536696 | Msa1018520:CDS | 45.0% | |
| CACCGAATCAAACAGCTTAC+CGG | - | chr7_1:38536682-38536701 | None:intergenic | 45.0% | |
| !! | TAAGCTGTTTGATTCGGTGG+TGG | + | chr7_1:38536683-38536702 | Msa1018520:CDS | 45.0% |
| !! | TGGCTACACCGATTTGTACT+TGG | + | chr7_1:38536052-38536071 | Msa1018520:CDS | 45.0% |
| ACAGCTTGACCAAACGACTT+TGG | - | chr7_1:38536114-38536133 | None:intergenic | 45.0% | |
| AAGAGCCTTCGATGAAAGAG+GGG | - | chr7_1:38536292-38536311 | None:intergenic | 45.0% | |
| ! | TTGAAGTATCCCTTGCCAAG+CGG | - | chr7_1:38536366-38536385 | None:intergenic | 45.0% |
| ! | GATGAAGAAGGTATGGGCAT+TGG | + | chr7_1:38536410-38536429 | Msa1018520:CDS | 45.0% |
| ! | GAGATTCTTCTGCTGGTCTA+AGG | + | chr7_1:38536461-38536480 | Msa1018520:CDS | 45.0% |
| TGGCTTCATCTATAGCGAAG+GGG | - | chr7_1:38536605-38536624 | None:intergenic | 45.0% | |
| GTGGCTTCATCTATAGCGAA+GGG | - | chr7_1:38536606-38536625 | None:intergenic | 45.0% | |
| TGTGGCTTCATCTATAGCGA+AGG | - | chr7_1:38536607-38536626 | None:intergenic | 45.0% | |
| TACGTGCATAGTGCCCAAAA+AGG | - | chr7_1:38536638-38536657 | None:intergenic | 45.0% | |
| GTCCGGTAAGCTGTTTGATT+CGG | + | chr7_1:38536677-38536696 | Msa1018520:CDS | 45.0% | |
| CACCGAATCAAACAGCTTAC+CGG | - | chr7_1:38536682-38536701 | None:intergenic | 45.0% | |
| !! | TAAGCTGTTTGATTCGGTGG+TGG | + | chr7_1:38536683-38536702 | Msa1018520:CDS | 45.0% |
| !! | TTGGCCTTTTCTCTCTTCCC+CGG | + | chr7_1:38536071-38536090 | Msa1018520:CDS | 50.0% |
| ! | TTTTCTCTCTTCCCCGGAGA+CGG | + | chr7_1:38536077-38536096 | Msa1018520:CDS | 50.0% |
| GTCAAGCTGTGTCTGCTTCT+GGG | + | chr7_1:38536124-38536143 | Msa1018520:CDS | 50.0% | |
| TCAAGCTGTGTCTGCTTCTG+GGG | + | chr7_1:38536125-38536144 | Msa1018520:CDS | 50.0% | |
| TCACCGATGATGACCTTAGG+CGG | - | chr7_1:38536171-38536190 | None:intergenic | 50.0% | |
| GTGTCACCGATGATGACCTT+AGG | - | chr7_1:38536174-38536193 | None:intergenic | 50.0% | |
| GAATGTCTTCGCAACCTCCA+TGG | + | chr7_1:38536240-38536259 | Msa1018520:CDS | 50.0% | |
| AGAGCCTTCGATGAAAGAGG+GGG | - | chr7_1:38536291-38536310 | None:intergenic | 50.0% | |
| ! | TTTGGCCACATCTGAAGCCT+TGG | + | chr7_1:38536331-38536350 | Msa1018520:CDS | 50.0% |
| ATGGACCAAGGCTTCAGATG+TGG | - | chr7_1:38536339-38536358 | None:intergenic | 50.0% | |
| GGCTTCATCTATAGCGAAGG+GGG | - | chr7_1:38536604-38536623 | None:intergenic | 50.0% | |
| ! | CCACACAATCCCGCCTTTTT+GGG | + | chr7_1:38536622-38536641 | Msa1018520:CDS | 50.0% |
| TGCATAGTGCCCAAAAAGGC+GGG | - | chr7_1:38536634-38536653 | None:intergenic | 50.0% | |
| GTGCATAGTGCCCAAAAAGG+CGG | - | chr7_1:38536635-38536654 | None:intergenic | 50.0% | |
| GCACTATGCACGTATTCTCG+TGG | + | chr7_1:38536644-38536663 | Msa1018520:CDS | 50.0% | |
| TGCACGTATTCTCGTGGATG+TGG | + | chr7_1:38536650-38536669 | Msa1018520:CDS | 50.0% | |
| CTCGTGGATGTGGATATGTC+CGG | + | chr7_1:38536660-38536679 | Msa1018520:CDS | 50.0% | |
| !! | CGGTAAGCTGTTTGATTCGG+TGG | + | chr7_1:38536680-38536699 | Msa1018520:CDS | 50.0% |
| !! | TTGATTCGGTGGTGGTTGAG+AGG | + | chr7_1:38536691-38536710 | Msa1018520:CDS | 50.0% |
| !! | TGATTCGGTGGTGGTTGAGA+GGG | + | chr7_1:38536692-38536711 | Msa1018520:CDS | 50.0% |
| ACTCATACTCCACAGCTACC+GGG | - | chr7_1:38536731-38536750 | None:intergenic | 50.0% | |
| CACTCATACTCCACAGCTAC+CGG | - | chr7_1:38536732-38536751 | None:intergenic | 50.0% | |
| !! | TTGGCCTTTTCTCTCTTCCC+CGG | + | chr7_1:38536071-38536090 | Msa1018520:CDS | 50.0% |
| ! | TTTTCTCTCTTCCCCGGAGA+CGG | + | chr7_1:38536077-38536096 | Msa1018520:CDS | 50.0% |
| GTCAAGCTGTGTCTGCTTCT+GGG | + | chr7_1:38536124-38536143 | Msa1018520:CDS | 50.0% | |
| TCAAGCTGTGTCTGCTTCTG+GGG | + | chr7_1:38536125-38536144 | Msa1018520:CDS | 50.0% | |
| TCACCGATGATGACCTTAGG+CGG | - | chr7_1:38536171-38536190 | None:intergenic | 50.0% | |
| GTGTCACCGATGATGACCTT+AGG | - | chr7_1:38536174-38536193 | None:intergenic | 50.0% | |
| GAATGTCTTCGCAACCTCCA+TGG | + | chr7_1:38536240-38536259 | Msa1018520:CDS | 50.0% | |
| AGAGCCTTCGATGAAAGAGG+GGG | - | chr7_1:38536291-38536310 | None:intergenic | 50.0% | |
| ! | TTTGGCCACATCTGAAGCCT+TGG | + | chr7_1:38536331-38536350 | Msa1018520:CDS | 50.0% |
| ATGGACCAAGGCTTCAGATG+TGG | - | chr7_1:38536339-38536358 | None:intergenic | 50.0% | |
| GGCTTCATCTATAGCGAAGG+GGG | - | chr7_1:38536604-38536623 | None:intergenic | 50.0% | |
| ! | CCACACAATCCCGCCTTTTT+GGG | + | chr7_1:38536622-38536641 | Msa1018520:CDS | 50.0% |
| TGCATAGTGCCCAAAAAGGC+GGG | - | chr7_1:38536634-38536653 | None:intergenic | 50.0% | |
| GTGCATAGTGCCCAAAAAGG+CGG | - | chr7_1:38536635-38536654 | None:intergenic | 50.0% | |
| GCACTATGCACGTATTCTCG+TGG | + | chr7_1:38536644-38536663 | Msa1018520:CDS | 50.0% | |
| TGCACGTATTCTCGTGGATG+TGG | + | chr7_1:38536650-38536669 | Msa1018520:CDS | 50.0% | |
| CTCGTGGATGTGGATATGTC+CGG | + | chr7_1:38536660-38536679 | Msa1018520:CDS | 50.0% | |
| !! | CGGTAAGCTGTTTGATTCGG+TGG | + | chr7_1:38536680-38536699 | Msa1018520:CDS | 50.0% |
| !! | TTGATTCGGTGGTGGTTGAG+AGG | + | chr7_1:38536691-38536710 | Msa1018520:CDS | 50.0% |
| !! | TGATTCGGTGGTGGTTGAGA+GGG | + | chr7_1:38536692-38536711 | Msa1018520:CDS | 50.0% |
| ACTCATACTCCACAGCTACC+GGG | - | chr7_1:38536731-38536750 | None:intergenic | 50.0% | |
| CACTCATACTCCACAGCTAC+CGG | - | chr7_1:38536732-38536751 | None:intergenic | 50.0% | |
| GTCTCCGGGGAAGAGAGAAA+AGG | - | chr7_1:38536078-38536097 | None:intergenic | 55.0% | |
| CCAAACGACTTTGGACCCGA+CGG | - | chr7_1:38536105-38536124 | None:intergenic | 55.0% | |
| GGTCAAGCTGTGTCTGCTTC+TGG | + | chr7_1:38536123-38536142 | Msa1018520:CDS | 55.0% | |
| CCTCCGCCTAAGGTCATCAT+CGG | + | chr7_1:38536165-38536184 | Msa1018520:CDS | 55.0% | |
| GCATTGTGACACGACCATGG+AGG | - | chr7_1:38536257-38536276 | None:intergenic | 55.0% | |
| TCGGCATTGTGACACGACCA+TGG | - | chr7_1:38536260-38536279 | None:intergenic | 55.0% | |
| TGGTCGTGTCACAATGCCGA+AGG | + | chr7_1:38536260-38536279 | Msa1018520:CDS | 55.0% | |
| GGTCGTGTCACAATGCCGAA+GGG | + | chr7_1:38536261-38536280 | Msa1018520:CDS | 55.0% | |
| CGATCCCCCTCTTTCATCGA+AGG | + | chr7_1:38536284-38536303 | Msa1018520:CDS | 55.0% | |
| TCCATCACTCCGCTTGGCAA+GGG | + | chr7_1:38536354-38536373 | Msa1018520:CDS | 55.0% | |
| ACTGCGCGTGTGACTGAATC+TGG | - | chr7_1:38536503-38536522 | None:intergenic | 55.0% | |
| TTCAGTCACACGCGCAGTTG+TGG | + | chr7_1:38536505-38536524 | Msa1018520:CDS | 55.0% | |
| TCAGTCACACGCGCAGTTGT+GGG | + | chr7_1:38536506-38536525 | Msa1018520:CDS | 55.0% | |
| ! | GCCACACAATCCCGCCTTTT+TGG | + | chr7_1:38536621-38536640 | Msa1018520:CDS | 55.0% |
| CCCAAAAAGGCGGGATTGTG+TGG | - | chr7_1:38536625-38536644 | None:intergenic | 55.0% | |
| ! | GAGGGAAGGTTTTGCCTTCC+CGG | + | chr7_1:38536710-38536729 | Msa1018520:CDS | 55.0% |
| ! | TTTTGCCTTCCCGGTAGCTG+TGG | + | chr7_1:38536719-38536738 | Msa1018520:CDS | 55.0% |
| ATACTCCACAGCTACCGGGA+AGG | - | chr7_1:38536727-38536746 | None:intergenic | 55.0% | |
| GTCTCCGGGGAAGAGAGAAA+AGG | - | chr7_1:38536078-38536097 | None:intergenic | 55.0% | |
| CCAAACGACTTTGGACCCGA+CGG | - | chr7_1:38536105-38536124 | None:intergenic | 55.0% | |
| GGTCAAGCTGTGTCTGCTTC+TGG | + | chr7_1:38536123-38536142 | Msa1018520:CDS | 55.0% | |
| CCTCCGCCTAAGGTCATCAT+CGG | + | chr7_1:38536165-38536184 | Msa1018520:CDS | 55.0% | |
| GCATTGTGACACGACCATGG+AGG | - | chr7_1:38536257-38536276 | None:intergenic | 55.0% | |
| TCGGCATTGTGACACGACCA+TGG | - | chr7_1:38536260-38536279 | None:intergenic | 55.0% | |
| TGGTCGTGTCACAATGCCGA+AGG | + | chr7_1:38536260-38536279 | Msa1018520:CDS | 55.0% | |
| GGTCGTGTCACAATGCCGAA+GGG | + | chr7_1:38536261-38536280 | Msa1018520:CDS | 55.0% | |
| CGATCCCCCTCTTTCATCGA+AGG | + | chr7_1:38536284-38536303 | Msa1018520:CDS | 55.0% | |
| TCCATCACTCCGCTTGGCAA+GGG | + | chr7_1:38536354-38536373 | Msa1018520:CDS | 55.0% | |
| ACTGCGCGTGTGACTGAATC+TGG | - | chr7_1:38536503-38536522 | None:intergenic | 55.0% | |
| TTCAGTCACACGCGCAGTTG+TGG | + | chr7_1:38536505-38536524 | Msa1018520:CDS | 55.0% | |
| TCAGTCACACGCGCAGTTGT+GGG | + | chr7_1:38536506-38536525 | Msa1018520:CDS | 55.0% | |
| ! | GCCACACAATCCCGCCTTTT+TGG | + | chr7_1:38536621-38536640 | Msa1018520:CDS | 55.0% |
| CCCAAAAAGGCGGGATTGTG+TGG | - | chr7_1:38536625-38536644 | None:intergenic | 55.0% | |
| ! | GAGGGAAGGTTTTGCCTTCC+CGG | + | chr7_1:38536710-38536729 | Msa1018520:CDS | 55.0% |
| ! | TTTTGCCTTCCCGGTAGCTG+TGG | + | chr7_1:38536719-38536738 | Msa1018520:CDS | 55.0% |
| ATACTCCACAGCTACCGGGA+AGG | - | chr7_1:38536727-38536746 | None:intergenic | 55.0% | |
| CCGTCGGGTCCAAAGTCGTT+TGG | + | chr7_1:38536102-38536121 | Msa1018520:CDS | 60.0% | |
| ATGACCTTAGGCGGAGGCGA+AGG | - | chr7_1:38536162-38536181 | None:intergenic | 60.0% | |
| CCGATGATGACCTTAGGCGG+AGG | - | chr7_1:38536168-38536187 | None:intergenic | 60.0% | |
| GAAAGAGGGGGATCGCCCTT+CGG | - | chr7_1:38536279-38536298 | None:intergenic | 60.0% | |
| !! | CCAAGCGGAGTGATGGACCA+AGG | - | chr7_1:38536351-38536370 | None:intergenic | 60.0% |
| CCTTGGTCCATCACTCCGCT+TGG | + | chr7_1:38536348-38536367 | Msa1018520:CDS | 60.0% | |
| GTCCATCACTCCGCTTGGCA+AGG | + | chr7_1:38536353-38536372 | Msa1018520:CDS | 60.0% | |
| TCCCTTGCCAAGCGGAGTGA+TGG | - | chr7_1:38536358-38536377 | None:intergenic | 60.0% | |
| CACACGCGCAGTTGTGGGTA+AGG | + | chr7_1:38536511-38536530 | Msa1018520:CDS | 60.0% | |
| ! | TCGGTGGTGGTTGAGAGGGA+AGG | + | chr7_1:38536696-38536715 | Msa1018520:CDS | 60.0% |
| CCGTCGGGTCCAAAGTCGTT+TGG | + | chr7_1:38536102-38536121 | Msa1018520:CDS | 60.0% | |
| ATGACCTTAGGCGGAGGCGA+AGG | - | chr7_1:38536162-38536181 | None:intergenic | 60.0% | |
| CCGATGATGACCTTAGGCGG+AGG | - | chr7_1:38536168-38536187 | None:intergenic | 60.0% | |
| GAAAGAGGGGGATCGCCCTT+CGG | - | chr7_1:38536279-38536298 | None:intergenic | 60.0% | |
| !! | CCAAGCGGAGTGATGGACCA+AGG | - | chr7_1:38536351-38536370 | None:intergenic | 60.0% |
| CCTTGGTCCATCACTCCGCT+TGG | + | chr7_1:38536348-38536367 | Msa1018520:CDS | 60.0% | |
| GTCCATCACTCCGCTTGGCA+AGG | + | chr7_1:38536353-38536372 | Msa1018520:CDS | 60.0% | |
| TCCCTTGCCAAGCGGAGTGA+TGG | - | chr7_1:38536358-38536377 | None:intergenic | 60.0% | |
| CACACGCGCAGTTGTGGGTA+AGG | + | chr7_1:38536511-38536530 | Msa1018520:CDS | 60.0% | |
| ! | TCGGTGGTGGTTGAGAGGGA+AGG | + | chr7_1:38536696-38536715 | Msa1018520:CDS | 60.0% |
| CTTGCCTTCGCCTCCGCCTA+AGG | + | chr7_1:38536155-38536174 | Msa1018520:CDS | 65.0% | |
| CTTGCCTTCGCCTCCGCCTA+AGG | + | chr7_1:38536155-38536174 | Msa1018520:CDS | 65.0% | |
| TTCCCCGGAGACGGCGCCGT+CGG | + | chr7_1:38536086-38536105 | Msa1018520:CDS | 75.0% | |
| TTCCCCGGAGACGGCGCCGT+CGG | + | chr7_1:38536086-38536105 | Msa1018520:CDS | 75.0% | |
| ! | TCCCCGGAGACGGCGCCGTC+GGG | + | chr7_1:38536087-38536106 | Msa1018520:CDS | 80.0% |
| ! | ACCCGACGGCGCCGTCTCCG+GGG | - | chr7_1:38536091-38536110 | None:intergenic | 80.0% |
| ! | GACCCGACGGCGCCGTCTCC+GGG | - | chr7_1:38536092-38536111 | None:intergenic | 80.0% |
| ! | GGACCCGACGGCGCCGTCTC+CGG | - | chr7_1:38536093-38536112 | None:intergenic | 80.0% |
| ! | TCCCCGGAGACGGCGCCGTC+GGG | + | chr7_1:38536087-38536106 | Msa1018520:CDS | 80.0% |
| ! | ACCCGACGGCGCCGTCTCCG+GGG | - | chr7_1:38536091-38536110 | None:intergenic | 80.0% |
| ! | GACCCGACGGCGCCGTCTCC+GGG | - | chr7_1:38536092-38536111 | None:intergenic | 80.0% |
| ! | GGACCCGACGGCGCCGTCTC+CGG | - | chr7_1:38536093-38536112 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 38536051 | 38536869 | 38536051 | ID=Msa1018520;Name=Msa1018520 |
| chr7_1 | mRNA | 38536051 | 38536869 | 38536051 | ID=Msa1018520-mRNA-1;Parent=Msa1018520;Name=Msa1018520-mRNA-1;_AED=0.26;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|272 |
| chr7_1 | exon | 38536051 | 38536869 | 38536051 | ID=Msa1018520-mRNA-1:exon:7470;Parent=Msa1018520-mRNA-1 |
| chr7_1 | CDS | 38536051 | 38536869 | 38536051 | ID=Msa1018520-mRNA-1:cds;Parent=Msa1018520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
