AlfalfaGEDB | Msa1289430

M. sativa cultivar zhongmu-4 / Msa1289430

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1289430	KEH22406.1	70.088	341	54	3	56	396	15	307	1.46e-157	457

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1289430	sp\|Q9SZL8\|FRS5_ARATH	34.025	241	155	4	163	401	77	315	2.15e-27	118

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1289430	A0A072TZ24	70.088	341	54	3	56	396	15	307	6.96e-158	457

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TFs/TRs:

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Gene ID	Type	Classification
Msa1289430	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013750	Msa1289430	0.803001	4.292861e-49	-8.615850e-47
Msa0014330	Msa1289430	0.803397	3.554997e-49	-8.615850e-47
Msa0015750	Msa1289430	0.824880	6.351680e-54	-8.615850e-47
Msa0016570	Msa1289430	0.848236	6.969651e-60	-8.615850e-47
Msa0016580	Msa1289430	0.827475	1.533165e-54	-8.615850e-47
Msa0102070	Msa1289430	0.862369	5.322161e-64	-8.615850e-47
Msa0110270	Msa1289430	0.824869	6.389715e-54	-8.615850e-47
Msa0111510	Msa1289430	0.811044	8.522337e-51	-8.615850e-47
Msa0123810	Msa1289430	0.804629	1.971067e-49	-8.615850e-47
Msa0131770	Msa1289430	0.814177	1.759416e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1289430	MtrunA17_Chr2g0287651	67.045	264	87	0	142	405	58	321	2.31e-126	385
Msa1289430	MtrunA17_Chr1g0203051	35.048	311	192	5	100	407	22	325	7.62e-50	178
Msa1289430	MtrunA17_Chr5g0448761	34.836	244	153	5	163	401	64	306	2.81e-29	120
Msa1289430	MtrunA17_Chr8g0363841	31.760	233	151	4	169	398	27	254	4.95e-23	101
Msa1289430	MtrunA17_Chr1g0202341	29.615	260	156	8	158	405	50	294	4.52e-22	98.6
Msa1289430	MtrunA17_Chr3g0082121	29.796	245	154	5	161	401	45	275	8.41e-21	94.7
Msa1289430	MtrunA17_Chr8g0389811	33.523	176	107	3	97	262	12	187	2.92e-20	88.6
Msa1289430	MtrunA17_Chr2g0276841	28.682	258	145	7	165	401	76	315	3.24e-20	93.2
Msa1289430	MtrunA17_Chr1g0198761	27.692	260	148	8	169	404	57	300	1.30e-19	91.3
Msa1289430	MtrunA17_Chr5g0431001	29.218	243	160	6	171	403	73	313	1.37e-19	90.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1289430	AT4G38180.1	34.025	241	155	4	163	401	77	315	2.18e-28	118
Msa1289430	AT4G15090.1	29.508	244	166	5	163	404	55	294	4.98e-23	102
Msa1289430	AT4G15090.5	29.508	244	166	5	163	404	55	294	4.98e-23	102
Msa1289430	AT4G15090.3	29.508	244	166	5	163	404	55	294	4.98e-23	102
Msa1289430	AT4G15090.2	29.508	244	166	5	163	404	55	294	4.98e-23	102
Msa1289430	AT4G15090.4	29.508	244	166	5	163	404	55	294	4.98e-23	102
Msa1289430	AT3G22170.2	27.900	319	178	9	113	404	10	303	7.94e-22	98.6
Msa1289430	AT3G22170.1	27.900	319	178	9	113	404	10	303	7.94e-22	98.6
Msa1289430	AT1G10240.2	29.710	276	177	7	141	403	24	295	1.02e-20	95.1
Msa1289430	AT1G10240.1	29.710	276	177	7	141	403	24	295	1.02e-20	95.1

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Find 76 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTATCCGATGATTGTT+GGG	0.461967	8_3:-43298343	Msa1289430:CDS
AACAATGACTTTACGGATTT+TGG	0.048057	8_3:-43298413	Msa1289430:CDS
AAGGGTGGATATCCTGGTGT+TGG	0.458467	8_3:-43297513	Msa1289430:CDS
AATAAGAACTTGTCATATAA+TGG	0.247315	8_3:-43297553	Msa1289430:CDS
AATAATGGAAATGGAATTTG+CGG	0.487093	8_3:-43297952	Msa1289430:CDS
AATGAAGGTCATGGTAGTGA+AGG	0.653004	8_3:-43298053	Msa1289430:CDS
AATGTAGATGATAGTTCTGA+TGG	0.493462	8_3:-43298287	Msa1289430:CDS
ACTCCCAACAATCATCGGAT+AGG	0.580782	8_3:+43298340	None:intergenic
ACTGAAGGTGATGAAAGTGA+AGG	0.722369	8_3:-43298083	Msa1289430:CDS
AGAGGAATGTGGATCAGTTG+AGG	0.594052	8_3:+43297389	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAGAACCGTAATCATATTT+CGG	+	chr8_3:43297257-43297276	None:intergenic	30.0%
ATTAACTGCTGAAGGAATAA+TGG	-	chr8_3:43297673-43297692	Msa1289430:CDS	30.0%
TTAACGATGAGATTGTAATG+AGG	-	chr8_3:43297795-43297814	Msa1289430:CDS	30.0%
GTAGAACCGTAATCATATTT+CGG	+	chr8_3:43297257-43297276	None:intergenic	30.0%
ATTAACTGCTGAAGGAATAA+TGG	-	chr8_3:43297673-43297692	Msa1289430:CDS	30.0%
TTAACGATGAGATTGTAATG+AGG	-	chr8_3:43297795-43297814	Msa1289430:CDS	30.0%
GGTTCACCGAAATATGATTA+CGG	-	chr8_3:43297248-43297267	Msa1289430:CDS	35.0%
AAACCTATCCGATGATTGTT+GGG	-	chr8_3:43297297-43297316	Msa1289430:CDS	35.0%
TGTTCTGGTGATTATAGTGT+TGG	-	chr8_3:43297467-43297486	Msa1289430:CDS	35.0%
AGCATTTATCAAGGTCAGAT+AGG	-	chr8_3:43297855-43297874	Msa1289430:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	43297212	43298450	43297212	ID=Msa1289430;Name=Msa1289430
chr8_3	mRNA	43297212	43298450	43297212	ID=Msa1289430-mRNA-1;Parent=Msa1289430;Name=Msa1289430-mRNA-1;_AED=0.13;_eAED=0.15;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|412
chr8_3	exon	43297212	43298450	43297212	ID=Msa1289430-mRNA-1:exon:11875;Parent=Msa1289430-mRNA-1
chr8_3	CDS	43297212	43298450	43297212	ID=Msa1289430-mRNA-1:cds;Parent=Msa1289430-mRNA-1

Gene Sequence

>Msa1289430

ATGGAAAAAAAAAACAACAATGACTTTACGGATTTTGGTTCACCGAAATATGATTACGGTTCTACGAATGTGGATTTGAAAGACGAAACCTATCCGATGATTGTTGGGAGTCAAGGTAAATCTACTGAGAATGTTGAACAAAATGTAGATGATAGTTCTGATGGGAGTCGTGGTAATTTTACTCAGAATTCTCAAGCGAATGCAGGTGACGATAGTTCTGATGAAACTGGAGGCAATGAAAGTGATGATGGTGGTTGTTCTGGTGATTATAGTGTTGGTGATAAAGGTGAAGATGATGAAAGTCAAGGTTATGAAAGTGACAGTGATGAAAGTGAAGGTGATGAAACTGAAGGTGATGAAAGTGAAGGTCATGGTAATGAAGGTCATGGTAGTGAAGGTGATAAGAATTTAGATGAAGATGATGATGTAGTTGTTGGTGAGGAAATGGTAAGGATAAATTCATTAACTGCTGAAGGAATAATGGAAATGGAATTTGCGGGTATTGATGAAGCTTACGATTTTTATTTTAAGTACTGTAAGTGTAAAGGTTTTGATGTTAAGAAGAGTGATATTAGGCGCAATGTTAACGATGAGATTGTAATGAGGCAGTATGTATGCAACAAGCAGGGGTTCAGAGAGAAGAAGCATTTATCAAGGTCAGATAGGCAAAGAGATCATCGACGTCTCACTCGTACAAAGTGTCCAGCTAGGCTTCGTGTTCACTACAGACCCAAAAAGGGTAGATATGTTATGTATATTTTTGAAGAGAGTCACAACCATGAACTTACTCCATCTAGTGTTGTGCATTTACACCTTGTTTATCGGCAAATATTCGAGGCAGATAAAGCACAAATTGATGGTCTTCAATTACACGGAATAAGAACTTGTCATATAATGGGATACATTGTGGCTCAGAAGGGTGGATATCCTGGTGTTGGGTTCACTAAGAAAGATTTGTACAATTACTTTGACAAAAAAATGTGTGTTGTTATTAAGGATAGTGATGTTTTAGCTGCTTTAAACTATCTGAATGTTAAATCCTCAACTGATCCACATTCCTCTTGTCAATATTCTACCACTGATGATGGACGTTTGAAATGTCTATTTTGGGCATATGGCACAAGTAGATCAGATTATTTCTGTTTTGGCGATGTGGTTGCATTTGACACAACGTACAACAAGAACAAATACAACTATCCGTTGGTGATTTTGTCTGCTGCAACCACCACTCACAAATAG

Protein sequence

>Msa1289430

MEKKNNNDFTDFGSPKYDYGSTNVDLKDETYPMIVGSQGKSTENVEQNVDDSSDGSRGNFTQNSQANAGDDSSDETGGNESDDGGCSGDYSVGDKGEDDESQGYESDSDESEGDETEGDESEGHGNEGHGSEGDKNLDEDDDVVVGEEMVRINSLTAEGIMEMEFAGIDEAYDFYFKYCKCKGFDVKKSDIRRNVNDEIVMRQYVCNKQGFREKKHLSRSDRQRDHRRLTRTKCPARLRVHYRPKKGRYVMYIFEESHNHELTPSSVVHLHLVYRQIFEADKAQIDGLQLHGIRTCHIMGYIVAQKGGYPGVGFTKKDLYNYFDKKMCVVIKDSDVLAALNYLNVKSSTDPHSSCQYSTTDDGRLKCLFWAYGTSRSDYFCFGDVVAFDTTYNKNKYNYPLVILSAATTTHK*