Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030580 | XP_003624448.2 | 98.684 | 380 | 5 | 0 | 1 | 380 | 44 | 423 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030580 | sp|Q9SGA2|GDPD1_ARATH | 64.116 | 379 | 115 | 4 | 1 | 378 | 1 | 359 | 1.81e-173 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030580 | G7KW66 | 98.684 | 380 | 5 | 0 | 1 | 380 | 44 | 423 | 0.0 | 767 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0416340 | Msa1030580 | 0.802855 | 4.601992e-49 | -8.615850e-47 |
| Msa1030580 | Msa1069710 | 0.875593 | 2.727623e-68 | -8.615850e-47 |
| Msa1030580 | Msa1120170 | 0.881944 | 1.574515e-70 | -8.615850e-47 |
| Msa1030580 | Msa1157460 | 0.862890 | 3.677644e-64 | -8.615850e-47 |
| Msa1030580 | Msa1185870 | 0.803432 | 3.496261e-49 | -8.615850e-47 |
| Msa1030580 | Msa1281370 | 0.816722 | 4.776730e-52 | -8.615850e-47 |
| Msa1030580 | Msa1320530 | 0.801219 | 9.983630e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030580 | MtrunA17_Chr7g0251681 | 98.684 | 380 | 5 | 0 | 1 | 380 | 44 | 423 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030580 | AT3G02040.1 | 64.116 | 379 | 115 | 4 | 1 | 378 | 1 | 359 | 1.84e-174 | 490 |
| Msa1030580 | AT5G41080.1 | 62.730 | 381 | 130 | 4 | 1 | 378 | 1 | 372 | 6.63e-170 | 479 |
| Msa1030580 | AT5G41080.2 | 64.000 | 350 | 123 | 1 | 32 | 378 | 7 | 356 | 1.54e-166 | 470 |
| Msa1030580 | AT5G43300.1 | 55.233 | 344 | 148 | 3 | 40 | 378 | 28 | 370 | 9.17e-137 | 395 |
| Msa1030580 | AT5G43300.2 | 60.526 | 266 | 104 | 1 | 40 | 305 | 28 | 292 | 1.20e-119 | 348 |
Find 102 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAGACACATAGTAGAATT+TGG | 0.143971 | 7_1:-64767853 | Msa1030580:three_prime_UTR |
| TCTCAAAGTTGAACCTTCTT+TGG | 0.179312 | 7_1:-64768869 | Msa1030580:CDS |
| ATGCCAAAGTTCGTTGTAAT+TGG | 0.203809 | 7_1:-64769949 | Msa1030580:CDS |
| CTGAGATTAAAGGGATATTT+AGG | 0.216120 | 7_1:-64768382 | Msa1030580:CDS |
| AAGATGGAAAGATATATAAT+TGG | 0.239327 | 7_1:-64768936 | Msa1030580:CDS |
| TGCTGCATGTAAACCGCTTC+TGG | 0.257661 | 7_1:+64768159 | None:intergenic |
| TCTTCCTCCCCAATCTTTGC+TGG | 0.274045 | 7_1:+64768063 | None:intergenic |
| GGAATTGTTTCTGAGATTAA+AGG | 0.279889 | 7_1:-64768392 | Msa1030580:CDS |
| TGTCCTTCAAGCCATCTTAA+AGG | 0.281962 | 7_1:-64768785 | Msa1030580:intron |
| TTAGACACATAGTAGAATTT+GGG | 0.298159 | 7_1:-64767852 | Msa1030580:three_prime_UTR |
| CTCAAAGTTGAACCTTCTTT+GGG | 0.302561 | 7_1:-64768868 | Msa1030580:CDS |
| AATAAAAGAGTTAATGTAAA+AGG | 0.311552 | 7_1:+64767873 | None:intergenic |
| TTTCATTGAATTTGATGTTC+AGG | 0.320866 | 7_1:-64769818 | Msa1030580:intron |
| TGAAAAGTTGAGAATATAAT+AGG | 0.330593 | 7_1:+64768660 | None:intergenic |
| AGATTTGAGAAGGAACTCTT+TGG | 0.345870 | 7_1:-64768453 | Msa1030580:CDS |
| GGGAACACTGATGATAGTTT+AGG | 0.348892 | 7_1:-64767910 | Msa1030580:three_prime_UTR |
| TGGAGCTGTAAGCAAGATTA+AGG | 0.350925 | 7_1:-64768354 | Msa1030580:CDS |
| TTATCAGAGTTTCTTTCCTA+TGG | 0.353326 | 7_1:-64769009 | Msa1030580:CDS |
| TACAAATGATTAAGCATTCA+TGG | 0.364964 | 7_1:+64767822 | None:intergenic |
| GGTTTACATGCAGCATCTAA+TGG | 0.369583 | 7_1:-64768151 | Msa1030580:CDS |
| AGGGTTTGGCCGAAGGGATT+GGG | 0.373691 | 7_1:-64768041 | Msa1030580:CDS |
| AGCAAAGATTGGGGAGGAAG+AGG | 0.375857 | 7_1:-64768061 | Msa1030580:CDS |
| GATTGGGGAGGAAGAGGGTT+TGG | 0.378842 | 7_1:-64768055 | Msa1030580:CDS |
| AATCTCTCTCTTCTAACATA+TGG | 0.380053 | 7_1:-64768326 | Msa1030580:CDS |
| AAGCTTGTTCATAAACAATA+TGG | 0.381299 | 7_1:+64768818 | None:intergenic |
| AATGACTGGGCAGTCATCTT+TGG | 0.381797 | 7_1:+64769360 | None:intergenic |
| AGCAGCATTAAAAGACATAA+TGG | 0.382783 | 7_1:+64769858 | None:intergenic |
| GAATTGTTTCTGAGATTAAA+GGG | 0.391330 | 7_1:-64768391 | Msa1030580:CDS |
| GTTTACATGCAGCATCTAAT+GGG | 0.403133 | 7_1:-64768150 | Msa1030580:CDS |
| GAGGGTTTGGCCGAAGGGAT+TGG | 0.403373 | 7_1:-64768042 | Msa1030580:CDS |
| GGAGGCTTTGAAACTCAGTT+TGG | 0.410209 | 7_1:-64768429 | Msa1030580:CDS |
| TCACTTGAGGATGAAGGAAA+TGG | 0.417148 | 7_1:-64767780 | Msa1030580:three_prime_UTR |
| ATGATGAAGCCAGCAAAGAT+TGG | 0.421649 | 7_1:-64768072 | Msa1030580:CDS |
| TGATGAAGCCAGCAAAGATT+GGG | 0.421680 | 7_1:-64768071 | Msa1030580:CDS |
| CAGCATCTAATGGGGATTGA+TGG | 0.423851 | 7_1:-64768141 | Msa1030580:CDS |
| GGTACGTACCGCTAGGAAAA+CGG | 0.428995 | 7_1:+64770126 | None:intergenic |
| TTAATCTTGCTTACAGCTCC+AGG | 0.431798 | 7_1:+64768356 | None:intergenic |
| ATATGTTAGAAGAGAGAGAT+TGG | 0.434124 | 7_1:+64768328 | None:intergenic |
| TTGAAACTCAGTTTGGAGAA+TGG | 0.434946 | 7_1:-64768422 | Msa1030580:CDS |
| TATCAGAGTTTCTTTCCTAT+GGG | 0.444504 | 7_1:-64769008 | Msa1030580:CDS |
| AGATGGAAAGATATATAATT+GGG | 0.444899 | 7_1:-64768935 | Msa1030580:CDS |
| AGGAATGGAAGGAAAAGTTT+TGG | 0.446126 | 7_1:-64768971 | Msa1030580:CDS |
| AAAGGGATATTTAGGAATCC+TGG | 0.447524 | 7_1:-64768374 | Msa1030580:CDS |
| CTTTGAGAAATGCTTCTTGA+AGG | 0.451089 | 7_1:+64768884 | None:intergenic |
| CGAACAAGTATTGCTGCATC+AGG | 0.451896 | 7_1:+64768636 | None:intergenic |
| ATTATGTATGAAAATTAGCT+TGG | 0.455702 | 7_1:-64767755 | Msa1030580:three_prime_UTR |
| GTACCTTTAAGATGGCTTGA+AGG | 0.459178 | 7_1:+64768782 | None:intergenic |
| TGAGTTCTTCCCAATCCCTT+CGG | 0.461892 | 7_1:+64768032 | None:intergenic |
| AGAAATAACAGAGGCGGTTG+CGG | 0.465009 | 7_1:-64768097 | Msa1030580:CDS |
| ACGGCTTTGAGAGCCATGTT+AGG | 0.469542 | 7_1:+64770215 | None:intergenic |
| TGTCCAATTACAACGAACTT+TGG | 0.470443 | 7_1:+64769946 | None:intergenic |
| CTTTAAAGCAATAGCAATTG+TGG | 0.470865 | 7_1:+64767961 | None:intergenic |
| TTTCTCTCTTTCACCTAACA+TGG | 0.474646 | 7_1:-64770228 | Msa1030580:exon |
| TTTGAGAAGGAACTCTTTGG+AGG | 0.476549 | 7_1:-64768450 | Msa1030580:CDS |
| GAGGAAGAGGGTTTGGCCGA+AGG | 0.478432 | 7_1:-64768048 | Msa1030580:CDS |
| AAAGAAAAGAAAGCTCCTGC+TGG | 0.480481 | 7_1:+64767995 | None:intergenic |
| TAATCATCGTGGAAAATGAC+TGG | 0.483951 | 7_1:+64769346 | None:intergenic |
| GGGGAGAGGAGGGAAAGGGA+GGG | 0.486552 | 7_1:+64770149 | None:intergenic |
| TATGAATGTGTTACAATCTA+CGG | 0.500744 | 7_1:-64769911 | Msa1030580:CDS |
| TTGCTTTAAAGAAGAAGAGA+TGG | 0.503337 | 7_1:-64767949 | Msa1030580:exon |
| AGGAAGAGGGTTTGGCCGAA+GGG | 0.509155 | 7_1:-64768047 | Msa1030580:CDS |
| AGCATCTAATGGGGATTGAT+GGG | 0.509656 | 7_1:-64768140 | Msa1030580:CDS |
| GAGAAGGAACTCTTTGGAGG+AGG | 0.514894 | 7_1:-64768447 | Msa1030580:CDS |
| TTTGAGAAATGCTTCTTGAA+GGG | 0.525807 | 7_1:+64768885 | None:intergenic |
| TATGGGCTTCAAAGAGAGGC+AGG | 0.530911 | 7_1:-64768991 | Msa1030580:CDS |
| TGCTTTAAAGAAGAAGAGAT+GGG | 0.532380 | 7_1:-64767948 | Msa1030580:exon |
| GCAAAGATTGGGGAGGAAGA+GGG | 0.539261 | 7_1:-64768060 | Msa1030580:CDS |
| ATGTATGAAAATTAGCTTGG+AGG | 0.540399 | 7_1:-64767752 | Msa1030580:three_prime_UTR |
| GTAATTGGACATAGAGGAAA+CGG | 0.541049 | 7_1:-64769934 | Msa1030580:CDS |
| TTGGAGATGAGCAATGGTGA+TGG | 0.541138 | 7_1:-64769979 | Msa1030580:CDS |
| GCTTCAAAGAGAGGCAGGAA+TGG | 0.544974 | 7_1:-64768986 | Msa1030580:CDS |
| GGGAAGGGACATCGGAGACA+TGG | 0.556227 | 7_1:+64770192 | None:intergenic |
| TTCCTATGGGCTTCAAAGAG+AGG | 0.559843 | 7_1:-64768995 | Msa1030580:CDS |
| TTACTGATTATGCTAAGGAT+AGG | 0.562411 | 7_1:-64768683 | Msa1030580:CDS |
| AACTCTGATAAACACAACTC+AGG | 0.562675 | 7_1:+64769021 | None:intergenic |
| CAAAGAGAGGCAGGAATGGA+AGG | 0.567526 | 7_1:-64768982 | Msa1030580:CDS |
| TCAAATTCAATGAAATCAAG+AGG | 0.567530 | 7_1:+64769826 | None:intergenic |
| AAGAAAAGAAAGCTCCTGCT+GGG | 0.569172 | 7_1:+64767996 | None:intergenic |
| TTCGTTGTAATTGGACATAG+AGG | 0.570824 | 7_1:-64769940 | Msa1030580:CDS |
| TCAATGTTAAAACCCAAAGA+AGG | 0.576235 | 7_1:+64768856 | None:intergenic |
| AAGAGTTAATGTAAAAGGAG+AGG | 0.577756 | 7_1:+64767878 | None:intergenic |
| GGTTGTTACTGATTATGCTA+AGG | 0.578866 | 7_1:-64768688 | Msa1030580:CDS |
| AAGATCGAGGGAAGGGACAT+CGG | 0.579041 | 7_1:+64770184 | None:intergenic |
| AGCTCCTGCTGGGAAAATTG+AGG | 0.583529 | 7_1:+64768006 | None:intergenic |
| AGTTTGGAGAATGGATTGAA+AGG | 0.583600 | 7_1:-64768413 | Msa1030580:CDS |
| CAGGGACAAGATCGAGGGAA+GGG | 0.588983 | 7_1:+64770177 | None:intergenic |
| TGACAGTAATGTTCCAGAAG+CGG | 0.597283 | 7_1:-64768172 | Msa1030580:intron |
| AAATCTATGAAGATTTGAGA+AGG | 0.605861 | 7_1:-64768463 | Msa1030580:CDS |
| TCAGGGACAAGATCGAGGGA+AGG | 0.614252 | 7_1:+64770176 | None:intergenic |
| TAGACACATAGTAGAATTTG+GGG | 0.617688 | 7_1:-64767851 | Msa1030580:three_prime_UTR |
| TTTACATGCAGCATCTAATG+GGG | 0.618814 | 7_1:-64768149 | Msa1030580:CDS |
| AGGGACATCGGAGACATGGA+CGG | 0.622912 | 7_1:+64770196 | None:intergenic |
| ATGTGTTACAATCTACGGAT+CGG | 0.624199 | 7_1:-64769906 | Msa1030580:CDS |
| GATGAAGCCAGCAAAGATTG+GGG | 0.647050 | 7_1:-64768070 | Msa1030580:CDS |
| TGCCTCTCTTTGAAGCCCAT+AGG | 0.647075 | 7_1:+64768993 | None:intergenic |
| TGTGCAAGAAATAACAGAGG+CGG | 0.669888 | 7_1:-64768103 | Msa1030580:CDS |
| AATCATCGTGGAAAATGACT+GGG | 0.679462 | 7_1:+64769347 | None:intergenic |
| GCATCTAATGGGGATTGATG+GGG | 0.682183 | 7_1:-64768139 | Msa1030580:CDS |
| GAAGCCAGCAAAGATTGGGG+AGG | 0.683522 | 7_1:-64768067 | Msa1030580:CDS |
| TCAGGTTTGGAGATGAGCAA+TGG | 0.690070 | 7_1:-64769985 | Msa1030580:intron |
| GAGAGTAGATGTAATCATCG+TGG | 0.718984 | 7_1:+64769335 | None:intergenic |
| CGTACCGCTAGGAAAACGGG+GGG | 0.801803 | 7_1:+64770130 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAAAAAAAAATAGTTTT+TGG | - | chr7_1:64768548-64768567 | Msa1030580:intron | 10.0% |
| !! | AGTGTAAAAATATTTAATAA+CGG | + | chr7_1:64768748-64768767 | None:intergenic | 10.0% |
| !!! | ATAGTTAAATTTGTTCAAAA+GGG | + | chr7_1:64769434-64769453 | None:intergenic | 15.0% |
| !! | AATAAAAGAGTTAATGTAAA+AGG | + | chr7_1:64770140-64770159 | None:intergenic | 15.0% |
| !!! | TATGATTTTGTTTTTTGATC+AGG | - | chr7_1:64768007-64768026 | Msa1030580:CDS | 20.0% |
| !!! | CTAATAATTTTCGTGTTTTT+CGG | + | chr7_1:64768300-64768319 | None:intergenic | 20.0% |
| !! | TATTTCTCGTAAATAAGTTT+GGG | - | chr7_1:64768430-64768449 | Msa1030580:CDS | 20.0% |
| !!! | TCTGTTAATTTTTTTCCTTT+TGG | - | chr7_1:64768502-64768521 | Msa1030580:intron | 20.0% |
| !!! | CTGTTAATTTTTTTCCTTTT+GGG | - | chr7_1:64768503-64768522 | Msa1030580:intron | 20.0% |
| !! | TTTGGATTAAAAAAGTTTGA+AGG | - | chr7_1:64768566-64768585 | Msa1030580:intron | 20.0% |
| !! | AAGATGGAAAGATATATAAT+TGG | - | chr7_1:64769074-64769093 | Msa1030580:intron | 20.0% |
| !! | AGATGGAAAGATATATAATT+GGG | - | chr7_1:64769075-64769094 | Msa1030580:intron | 20.0% |
| !!! | TTTTAACTTGATGAATGTTT+TGG | - | chr7_1:64769295-64769314 | Msa1030580:intron | 20.0% |
| !! | TGAAAAGTTGAGAATATAAT+AGG | + | chr7_1:64769353-64769372 | None:intergenic | 20.0% |
| !!! | CATAGTTAAATTTGTTCAAA+AGG | + | chr7_1:64769435-64769454 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTAACTAATGGA+GGG | - | chr7_1:64769520-64769539 | Msa1030580:intron | 20.0% |
| !! | ATGGAAAATTAAAGTATGTT+TGG | - | chr7_1:64769703-64769722 | Msa1030580:intron | 20.0% |
| !! | ACAATTATGGAAAAAACAAT+TGG | + | chr7_1:64769771-64769790 | None:intergenic | 20.0% |
| !! | ATTATGTATGAAAATTAGCT+TGG | - | chr7_1:64770255-64770274 | Msa1030580:five_prime_UTR | 20.0% |
| !! | AAAGAAAAAGAGAGAGATTT+TGG | + | chr7_1:64767765-64767784 | None:intergenic | 25.0% |
| ! | TGAATGTTAATGTAATGGTA+TGG | + | chr7_1:64767908-64767927 | None:intergenic | 25.0% |
| ! | ATGGATGAATGTTAATGTAA+TGG | + | chr7_1:64767913-64767932 | None:intergenic | 25.0% |
| ! | AAATAAAATAAGAACGTGCA+TGG | + | chr7_1:64767932-64767951 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTTTGATCAGGTT+TGG | - | chr7_1:64768012-64768031 | Msa1030580:CDS | 25.0% |
| ! | TATGAATGTGTTACAATCTA+CGG | - | chr7_1:64768099-64768118 | Msa1030580:CDS | 25.0% |
| ! | TCAAATTCAATGAAATCAAG+AGG | + | chr7_1:64768187-64768206 | None:intergenic | 25.0% |
| ! | TTTCATTGAATTTGATGTTC+AGG | - | chr7_1:64768192-64768211 | Msa1030580:intron | 25.0% |
| ! | TATTTACGAGAAATACCATA+GGG | + | chr7_1:64768425-64768444 | None:intergenic | 25.0% |
| ! | TTATTTACGAGAAATACCAT+AGG | + | chr7_1:64768426-64768445 | None:intergenic | 25.0% |
| ! | GTATTTCTCGTAAATAAGTT+TGG | - | chr7_1:64768429-64768448 | Msa1030580:CDS | 25.0% |
| ! | ATTTCTCGTAAATAAGTTTG+GGG | - | chr7_1:64768431-64768450 | Msa1030580:CDS | 25.0% |
| !! | TAAATAAGTTTGGGGTTTAA+GGG | - | chr7_1:64768439-64768458 | Msa1030580:CDS | 25.0% |
| !!! | AATTTTTTTCCTTTTGGGTT+TGG | - | chr7_1:64768508-64768527 | Msa1030580:intron | 25.0% |
| ! | TAAAAAATTCCAAACCCAAA+AGG | + | chr7_1:64768520-64768539 | None:intergenic | 25.0% |
| !! | AAGCTTGTTCATAAACAATA+TGG | + | chr7_1:64769195-64769214 | None:intergenic | 25.0% |
| !!! | AATTTTCTGTACCTTTAAGA+TGG | + | chr7_1:64769239-64769258 | None:intergenic | 25.0% |
| ! | ACTATCAAATACCAAACATA+TGG | + | chr7_1:64769275-64769294 | None:intergenic | 25.0% |
| !!! | CTATGATGAAGTTGTTTTTT+TGG | - | chr7_1:64769450-64769469 | Msa1030580:intron | 25.0% |
| !!! | CAGGTTTTCTTTTTAACTAA+TGG | - | chr7_1:64769516-64769535 | Msa1030580:intron | 25.0% |
| !!! | GTTTTCTTTTTAACTAATGG+AGG | - | chr7_1:64769519-64769538 | Msa1030580:intron | 25.0% |
| ! | AAATCTATGAAGATTTGAGA+AGG | - | chr7_1:64769547-64769566 | Msa1030580:intron | 25.0% |
| !!! | GAATTGTTTCTGAGATTAAA+GGG | - | chr7_1:64769619-64769638 | Msa1030580:intron | 25.0% |
| !!! | TACATGTTATTGGTCTTTTT+TGG | - | chr7_1:64769744-64769763 | Msa1030580:intron | 25.0% |
| ! | CATTACATTCAACACAATTA+TGG | + | chr7_1:64769784-64769803 | None:intergenic | 25.0% |
| !!! | AGATGGGTTTTAATTTGATT+TGG | - | chr7_1:64770078-64770097 | Msa1030580:intron | 25.0% |
| !!! | GATGGGTTTTAATTTGATTT+GGG | - | chr7_1:64770079-64770098 | Msa1030580:intron | 25.0% |
| !!! | ATGGGTTTTAATTTGATTTG+GGG | - | chr7_1:64770080-64770099 | Msa1030580:intron | 25.0% |
| ! | ATTAGACACATAGTAGAATT+TGG | - | chr7_1:64770157-64770176 | Msa1030580:CDS | 25.0% |
| ! | TTAGACACATAGTAGAATTT+GGG | - | chr7_1:64770158-64770177 | Msa1030580:CDS | 25.0% |
| ! | TACAAATGATTAAGCATTCA+TGG | + | chr7_1:64770191-64770210 | None:intergenic | 25.0% |
| !! | CATAATGGAGTTTTCTTTGA+TGG | + | chr7_1:64768140-64768159 | None:intergenic | 30.0% |
| AGCAGCATTAAAAGACATAA+TGG | + | chr7_1:64768155-64768174 | None:intergenic | 30.0% | |
| ATTTACGAGAAATACCATAG+GGG | + | chr7_1:64768424-64768443 | None:intergenic | 30.0% | |
| ! | GTAAATAAGTTTGGGGTTTA+AGG | - | chr7_1:64768438-64768457 | Msa1030580:CDS | 30.0% |
| !! | TGATGATTGTGATTTGTTGA+CGG | - | chr7_1:64768836-64768855 | Msa1030580:CDS | 30.0% |
| !!! | AGTTAAATGTGAGGGTATTT+TGG | - | chr7_1:64768931-64768950 | Msa1030580:CDS | 30.0% |
| !!! | GTTAAATGTGAGGGTATTTT+GGG | - | chr7_1:64768932-64768951 | Msa1030580:CDS | 30.0% |
| !!! | TTAAATGTGAGGGTATTTTG+GGG | - | chr7_1:64768933-64768952 | Msa1030580:CDS | 30.0% |
| ! | TTTTTACAGGGTAATGTGTT+TGG | - | chr7_1:64768956-64768975 | Msa1030580:CDS | 30.0% |
| ! | TTTTACAGGGTAATGTGTTT+GGG | - | chr7_1:64768957-64768976 | Msa1030580:CDS | 30.0% |
| TTATCAGAGTTTCTTTCCTA+TGG | - | chr7_1:64769001-64769020 | Msa1030580:CDS | 30.0% | |
| TATCAGAGTTTCTTTCCTAT+GGG | - | chr7_1:64769002-64769021 | Msa1030580:CDS | 30.0% | |
| TTGGTGAGAAAAACAAAAGA+TGG | - | chr7_1:64769058-64769077 | Msa1030580:intron | 30.0% | |
| TTTGAGAAATGCTTCTTGAA+GGG | + | chr7_1:64769128-64769147 | None:intergenic | 30.0% | |
| TCAATGTTAAAACCCAAAGA+AGG | + | chr7_1:64769157-64769176 | None:intergenic | 30.0% | |
| TATTTGCAGTACCATATGTT+TGG | - | chr7_1:64769261-64769280 | Msa1030580:intron | 30.0% | |
| ! | TTACTGATTATGCTAAGGAT+AGG | - | chr7_1:64769327-64769346 | Msa1030580:CDS | 30.0% |
| TATTGTGTGTGATTCTAACA+TGG | - | chr7_1:64769474-64769493 | Msa1030580:intron | 30.0% | |
| ATTGTGTGTGATTCTAACAT+GGG | - | chr7_1:64769475-64769494 | Msa1030580:intron | 30.0% | |
| !! | GGAATTGTTTCTGAGATTAA+AGG | - | chr7_1:64769618-64769637 | Msa1030580:intron | 30.0% |
| CTGAGATTAAAGGGATATTT+AGG | - | chr7_1:64769628-64769647 | Msa1030580:intron | 30.0% | |
| ATATGTTAGAAGAGAGAGAT+TGG | + | chr7_1:64769685-64769704 | None:intergenic | 30.0% | |
| AATCTCTCTCTTCTAACATA+TGG | - | chr7_1:64769684-64769703 | Msa1030580:intron | 30.0% | |
| AATAACATGTAACATGAGAG+TGG | + | chr7_1:64769735-64769754 | None:intergenic | 30.0% | |
| ACTCTCATGTTACATGTTAT+TGG | - | chr7_1:64769734-64769753 | Msa1030580:intron | 30.0% | |
| !!! | GATACTGATATTTGCTGTTT+TGG | - | chr7_1:64769809-64769828 | Msa1030580:intron | 30.0% |
| ! | TTTTGTGCAAGAAATAACAG+AGG | - | chr7_1:64769904-64769923 | Msa1030580:CDS | 30.0% |
| !! | CTTTAAAGCAATAGCAATTG+TGG | + | chr7_1:64770052-64770071 | None:intergenic | 30.0% |
| !! | TTGCTTTAAAGAAGAAGAGA+TGG | - | chr7_1:64770061-64770080 | Msa1030580:intron | 30.0% |
| !! | TGCTTTAAAGAAGAAGAGAT+GGG | - | chr7_1:64770062-64770081 | Msa1030580:intron | 30.0% |
| AAGAGTTAATGTAAAAGGAG+AGG | + | chr7_1:64770135-64770154 | None:intergenic | 30.0% | |
| TAGACACATAGTAGAATTTG+GGG | - | chr7_1:64770159-64770178 | Msa1030580:CDS | 30.0% | |
| ! | GATTTTCTTCTTTTCACTTG+AGG | - | chr7_1:64770217-64770236 | Msa1030580:exon | 30.0% |
| ! | ATGTATGAAAATTAGCTTGG+AGG | - | chr7_1:64770258-64770277 | Msa1030580:five_prime_UTR | 30.0% |
| TTTCTCTCTTTCACCTAACA+TGG | - | chr7_1:64767782-64767801 | Msa1030580:three_prime_UTR | 35.0% | |
| ATGCCAAAGTTCGTTGTAAT+TGG | - | chr7_1:64768061-64768080 | Msa1030580:CDS | 35.0% | |
| TGTCCAATTACAACGAACTT+TGG | + | chr7_1:64768067-64768086 | None:intergenic | 35.0% | |
| TTCGTTGTAATTGGACATAG+AGG | - | chr7_1:64768070-64768089 | Msa1030580:CDS | 35.0% | |
| GTAATTGGACATAGAGGAAA+CGG | - | chr7_1:64768076-64768095 | Msa1030580:CDS | 35.0% | |
| ATGTGTTACAATCTACGGAT+CGG | - | chr7_1:64768104-64768123 | Msa1030580:CDS | 35.0% | |
| ! | GCATGTTCTTTTTCCAGTTT+CGG | - | chr7_1:64768345-64768364 | Msa1030580:CDS | 35.0% |
| AATAGGAAACCCAGAAAAAG+CGG | + | chr7_1:64768398-64768417 | None:intergenic | 35.0% | |
| AAATACCATAGGGGCAAAAT+AGG | + | chr7_1:64768415-64768434 | None:intergenic | 35.0% | |
| ! | TTAAGGGTTTTTCTGTGGTT+TGG | - | chr7_1:64768455-64768474 | Msa1030580:CDS | 35.0% |
| AATCATCGTGGAAAATGACT+GGG | + | chr7_1:64768666-64768685 | None:intergenic | 35.0% | |
| TAATCATCGTGGAAAATGAC+TGG | + | chr7_1:64768667-64768686 | None:intergenic | 35.0% | |
| ! | AGTGCTTTGAGTTAAATGTG+AGG | - | chr7_1:64768922-64768941 | Msa1030580:CDS | 35.0% |
| ! | GTGCTTTGAGTTAAATGTGA+GGG | - | chr7_1:64768923-64768942 | Msa1030580:CDS | 35.0% |
| !!! | GGTATTTTGGGGTTTTTACA+GGG | - | chr7_1:64768944-64768963 | Msa1030580:CDS | 35.0% |
| AACTCTGATAAACACAACTC+AGG | + | chr7_1:64768992-64769011 | None:intergenic | 35.0% | |
| ! | AGGAATGGAAGGAAAAGTTT+TGG | - | chr7_1:64769039-64769058 | Msa1030580:CDS | 35.0% |
| ! | CTTTGAGAAATGCTTCTTGA+AGG | + | chr7_1:64769129-64769148 | None:intergenic | 35.0% |
| TCTCAAAGTTGAACCTTCTT+TGG | - | chr7_1:64769141-64769160 | Msa1030580:intron | 35.0% | |
| CTCAAAGTTGAACCTTCTTT+GGG | - | chr7_1:64769142-64769161 | Msa1030580:intron | 35.0% | |
| !!! | CTTGATGAATGTTTTGGAAC+AGG | - | chr7_1:64769301-64769320 | Msa1030580:intron | 35.0% |
| ! | GGTTGTTACTGATTATGCTA+AGG | - | chr7_1:64769322-64769341 | Msa1030580:intron | 35.0% |
| !!! | AACATGGGTTGGTGATTTTT+TGG | - | chr7_1:64769490-64769509 | Msa1030580:intron | 35.0% |
| AGATTTGAGAAGGAACTCTT+TGG | - | chr7_1:64769557-64769576 | Msa1030580:intron | 35.0% | |
| TTGAAACTCAGTTTGGAGAA+TGG | - | chr7_1:64769588-64769607 | Msa1030580:intron | 35.0% | |
| !! | AGTTTGGAGAATGGATTGAA+AGG | - | chr7_1:64769597-64769616 | Msa1030580:intron | 35.0% |
| AAAGGGATATTTAGGAATCC+TGG | - | chr7_1:64769636-64769655 | Msa1030580:intron | 35.0% | |
| GTTTACATGCAGCATCTAAT+GGG | - | chr7_1:64769860-64769879 | Msa1030580:CDS | 35.0% | |
| TTTACATGCAGCATCTAATG+GGG | - | chr7_1:64769861-64769880 | Msa1030580:CDS | 35.0% | |
| ! | TTCTTTTCACTTGAGGATGA+AGG | - | chr7_1:64770224-64770243 | Msa1030580:exon | 35.0% |
| !! | ATTTTCAGGGACAAGATCGA+GGG | + | chr7_1:64767841-64767860 | None:intergenic | 40.0% |
| ATGAGTTCAGATCAGATACG+CGG | + | chr7_1:64768374-64768393 | None:intergenic | 40.0% | |
| ! | TAAAGCAAAAGTGCATCGTG+TGG | - | chr7_1:64768613-64768632 | Msa1030580:intron | 40.0% |
| !!! | TGCATCGTGTGGTTTTTTGT+AGG | - | chr7_1:64768624-64768643 | Msa1030580:CDS | 40.0% |
| GAGAGTAGATGTAATCATCG+TGG | + | chr7_1:64768678-64768697 | None:intergenic | 40.0% | |
| !!! | GGGTATTTTGGGGTTTTTAC+AGG | - | chr7_1:64768943-64768962 | Msa1030580:CDS | 40.0% |
| TGTCCTTCAAGCCATCTTAA+AGG | - | chr7_1:64769225-64769244 | Msa1030580:intron | 40.0% | |
| !! | GTACCTTTAAGATGGCTTGA+AGG | + | chr7_1:64769231-64769250 | None:intergenic | 40.0% |
| TGTGTGATTCTAACATGGGT+TGG | - | chr7_1:64769479-64769498 | Msa1030580:intron | 40.0% | |
| !!! | ATGGGTTGGTGATTTTTTGG+TGG | - | chr7_1:64769493-64769512 | Msa1030580:intron | 40.0% |
| TTTGAGAAGGAACTCTTTGG+AGG | - | chr7_1:64769560-64769579 | Msa1030580:intron | 40.0% | |
| TTAATCTTGCTTACAGCTCC+AGG | + | chr7_1:64769657-64769676 | None:intergenic | 40.0% | |
| TGGAGCTGTAAGCAAGATTA+AGG | - | chr7_1:64769656-64769675 | Msa1030580:intron | 40.0% | |
| TGACAGTAATGTTCCAGAAG+CGG | - | chr7_1:64769838-64769857 | Msa1030580:CDS | 40.0% | |
| GGTTTACATGCAGCATCTAA+TGG | - | chr7_1:64769859-64769878 | Msa1030580:CDS | 40.0% | |
| AGCATCTAATGGGGATTGAT+GGG | - | chr7_1:64769870-64769889 | Msa1030580:CDS | 40.0% | |
| TGTGCAAGAAATAACAGAGG+CGG | - | chr7_1:64769907-64769926 | Msa1030580:CDS | 40.0% | |
| ATGATGAAGCCAGCAAAGAT+TGG | - | chr7_1:64769938-64769957 | Msa1030580:CDS | 40.0% | |
| TGATGAAGCCAGCAAAGATT+GGG | - | chr7_1:64769939-64769958 | Msa1030580:CDS | 40.0% | |
| AAGAAAAGAAAGCTCCTGCT+GGG | + | chr7_1:64770017-64770036 | None:intergenic | 40.0% | |
| AAAGAAAAGAAAGCTCCTGC+TGG | + | chr7_1:64770018-64770037 | None:intergenic | 40.0% | |
| GGGAACACTGATGATAGTTT+AGG | - | chr7_1:64770100-64770119 | Msa1030580:intron | 40.0% | |
| TCACTTGAGGATGAAGGAAA+TGG | - | chr7_1:64770230-64770249 | Msa1030580:exon | 40.0% | |
| !! | GATTTTCAGGGACAAGATCG+AGG | + | chr7_1:64767842-64767861 | None:intergenic | 45.0% |
| TCAGGTTTGGAGATGAGCAA+TGG | - | chr7_1:64768025-64768044 | Msa1030580:CDS | 45.0% | |
| TTGGAGATGAGCAATGGTGA+TGG | - | chr7_1:64768031-64768050 | Msa1030580:CDS | 45.0% | |
| !!! | TGAACTCATGCCGCTTTTTC+TGG | - | chr7_1:64768385-64768404 | Msa1030580:CDS | 45.0% |
| !!! | GAACTCATGCCGCTTTTTCT+GGG | - | chr7_1:64768386-64768405 | Msa1030580:CDS | 45.0% |
| ! | GGTTTCCTATTTTGCCCCTA+TGG | - | chr7_1:64768407-64768426 | Msa1030580:CDS | 45.0% |
| ! | GGGGTTTAAGGGTTTTTCTG+TGG | - | chr7_1:64768450-64768469 | Msa1030580:CDS | 45.0% |
| AATGACTGGGCAGTCATCTT+TGG | + | chr7_1:64768653-64768672 | None:intergenic | 45.0% | |
| TTCCTATGGGCTTCAAAGAG+AGG | - | chr7_1:64769015-64769034 | Msa1030580:CDS | 45.0% | |
| ! | CGAACAAGTATTGCTGCATC+AGG | + | chr7_1:64769377-64769396 | None:intergenic | 45.0% |
| CAAAAGGGCGAAAAACTCAC+TGG | + | chr7_1:64769419-64769438 | None:intergenic | 45.0% | |
| !!! | GTTGGTGATTTTTTGGTGGC+AGG | - | chr7_1:64769497-64769516 | Msa1030580:intron | 45.0% |
| !! | GGAGGCTTTGAAACTCAGTT+TGG | - | chr7_1:64769581-64769600 | Msa1030580:intron | 45.0% |
| CAGCATCTAATGGGGATTGA+TGG | - | chr7_1:64769869-64769888 | Msa1030580:CDS | 45.0% | |
| GCATCTAATGGGGATTGATG+GGG | - | chr7_1:64769871-64769890 | Msa1030580:CDS | 45.0% | |
| AGAAATAACAGAGGCGGTTG+CGG | - | chr7_1:64769913-64769932 | Msa1030580:CDS | 45.0% | |
| GATGAAGCCAGCAAAGATTG+GGG | - | chr7_1:64769940-64769959 | Msa1030580:CDS | 45.0% | |
| TGAGTTCTTCCCAATCCCTT+CGG | + | chr7_1:64769981-64770000 | None:intergenic | 45.0% | |
| ! | AAAGCCTCAATTTTCCCAGC+AGG | - | chr7_1:64770000-64770019 | Msa1030580:intron | 45.0% |
| !! | ACGGCTTTGAGAGCCATGTT+AGG | + | chr7_1:64767798-64767817 | None:intergenic | 50.0% |
| AAGATCGAGGGAAGGGACAT+CGG | + | chr7_1:64767829-64767848 | None:intergenic | 50.0% | |
| ! | GGGAAAGGGAGGGATTTTCA+GGG | + | chr7_1:64767854-64767873 | None:intergenic | 50.0% |
| ! | AGGGAAAGGGAGGGATTTTC+AGG | + | chr7_1:64767855-64767874 | None:intergenic | 50.0% |
| TACGTACCGCTAGGAAAACG+GGG | + | chr7_1:64767885-64767904 | None:intergenic | 50.0% | |
| GTACGTACCGCTAGGAAAAC+GGG | + | chr7_1:64767886-64767905 | None:intergenic | 50.0% | |
| GGTACGTACCGCTAGGAAAA+CGG | + | chr7_1:64767887-64767906 | None:intergenic | 50.0% | |
| ATGGTATGGTACGTACCGCT+AGG | + | chr7_1:64767894-64767913 | None:intergenic | 50.0% | |
| TACGTTGCAGTTGCATGCAG+AGG | + | chr7_1:64767971-64767990 | None:intergenic | 50.0% | |
| !! | TGCCTCTCTTTGAAGCCCAT+AGG | + | chr7_1:64769020-64769039 | None:intergenic | 50.0% |
| TATGGGCTTCAAAGAGAGGC+AGG | - | chr7_1:64769019-64769038 | Msa1030580:CDS | 50.0% | |
| GCTTCAAAGAGAGGCAGGAA+TGG | - | chr7_1:64769024-64769043 | Msa1030580:CDS | 50.0% | |
| CAAAGAGAGGCAGGAATGGA+AGG | - | chr7_1:64769028-64769047 | Msa1030580:CDS | 50.0% | |
| ! | GAGAAGGAACTCTTTGGAGG+AGG | - | chr7_1:64769563-64769582 | Msa1030580:intron | 50.0% |
| TGCTGCATGTAAACCGCTTC+TGG | + | chr7_1:64769854-64769873 | None:intergenic | 50.0% | |
| TCTTCCTCCCCAATCTTTGC+TGG | + | chr7_1:64769950-64769969 | None:intergenic | 50.0% | |
| AGCAAAGATTGGGGAGGAAG+AGG | - | chr7_1:64769949-64769968 | Msa1030580:CDS | 50.0% | |
| GCAAAGATTGGGGAGGAAGA+GGG | - | chr7_1:64769950-64769969 | Msa1030580:CDS | 50.0% | |
| AGCTCCTGCTGGGAAAATTG+AGG | + | chr7_1:64770007-64770026 | None:intergenic | 50.0% | |
| AGGGACATCGGAGACATGGA+CGG | + | chr7_1:64767817-64767836 | None:intergenic | 55.0% | |
| CAGGGACAAGATCGAGGGAA+GGG | + | chr7_1:64767836-64767855 | None:intergenic | 55.0% | |
| TCAGGGACAAGATCGAGGGA+AGG | + | chr7_1:64767837-64767856 | None:intergenic | 55.0% | |
| ACGTACCGCTAGGAAAACGG+GGG | + | chr7_1:64767884-64767903 | None:intergenic | 55.0% | |
| GAAGCCAGCAAAGATTGGGG+AGG | - | chr7_1:64769943-64769962 | Msa1030580:CDS | 55.0% | |
| GATTGGGGAGGAAGAGGGTT+TGG | - | chr7_1:64769955-64769974 | Msa1030580:CDS | 55.0% | |
| AGGAAGAGGGTTTGGCCGAA+GGG | - | chr7_1:64769963-64769982 | Msa1030580:CDS | 55.0% | |
| AGGGTTTGGCCGAAGGGATT+GGG | - | chr7_1:64769969-64769988 | Msa1030580:CDS | 55.0% | |
| GGGAAGGGACATCGGAGACA+TGG | + | chr7_1:64767821-64767840 | None:intergenic | 60.0% | |
| AGGAAAACGGGGGGAGAGGA+GGG | + | chr7_1:64767874-64767893 | None:intergenic | 60.0% | |
| TAGGAAAACGGGGGGAGAGG+AGG | + | chr7_1:64767875-64767894 | None:intergenic | 60.0% | |
| ! | CTCTCCCCCCGTTTTCCTAG+CGG | - | chr7_1:64767876-64767895 | Msa1030580:three_prime_UTR | 60.0% |
| CGTACCGCTAGGAAAACGGG+GGG | + | chr7_1:64767883-64767902 | None:intergenic | 60.0% | |
| AGATACGCGGCGACCGAAAC+TGG | + | chr7_1:64768361-64768380 | None:intergenic | 60.0% | |
| GAGGAAGAGGGTTTGGCCGA+AGG | - | chr7_1:64769962-64769981 | Msa1030580:CDS | 60.0% | |
| GAGGGTTTGGCCGAAGGGAT+TGG | - | chr7_1:64769968-64769987 | Msa1030580:CDS | 60.0% | |
| GGGGAGAGGAGGGAAAGGGA+GGG | + | chr7_1:64767864-64767883 | None:intergenic | 65.0% | |
| ACGGGGGGAGAGGAGGGAAA+GGG | + | chr7_1:64767868-64767887 | None:intergenic | 65.0% | |
| AACGGGGGGAGAGGAGGGAA+AGG | + | chr7_1:64767869-64767888 | None:intergenic | 65.0% | |
| CGCTAGGAAAACGGGGGGAG+AGG | + | chr7_1:64767878-64767897 | None:intergenic | 65.0% | |
| GGGGGAGAGGAGGGAAAGGG+AGG | + | chr7_1:64767865-64767884 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 64767749 | 64770283 | 64767749 | ID=Msa1030580;Name=Msa1030580 |
| chr7_1 | mRNA | 64767749 | 64770283 | 64767749 | ID=Msa1030580-mRNA-1;Parent=Msa1030580;Name=Msa1030580-mRNA-1;_AED=0.06;_eAED=0.06;_QI=52|1|1|1|1|1|7|214|380 |
| chr7_1 | exon | 64767749 | 64768188 | 64767749 | ID=Msa1030580-mRNA-1:exon:14264;Parent=Msa1030580-mRNA-1 |
| chr7_1 | exon | 64768317 | 64768513 | 64768317 | ID=Msa1030580-mRNA-1:exon:14263;Parent=Msa1030580-mRNA-1 |
| chr7_1 | exon | 64768614 | 64768709 | 64768614 | ID=Msa1030580-mRNA-1:exon:14262;Parent=Msa1030580-mRNA-1 |
| chr7_1 | exon | 64768786 | 64769067 | 64768786 | ID=Msa1030580-mRNA-1:exon:14261;Parent=Msa1030580-mRNA-1 |
| chr7_1 | exon | 64769327 | 64769386 | 64769327 | ID=Msa1030580-mRNA-1:exon:14260;Parent=Msa1030580-mRNA-1 |
| chr7_1 | exon | 64769819 | 64770003 | 64769819 | ID=Msa1030580-mRNA-1:exon:14259;Parent=Msa1030580-mRNA-1 |
| chr7_1 | exon | 64770135 | 64770283 | 64770135 | ID=Msa1030580-mRNA-1:exon:14258;Parent=Msa1030580-mRNA-1 |
| chr7_1 | five_prime_UTR | 64770232 | 64770283 | 64770232 | ID=Msa1030580-mRNA-1:five_prime_utr;Parent=Msa1030580-mRNA-1 |
| chr7_1 | CDS | 64770135 | 64770231 | 64770135 | ID=Msa1030580-mRNA-1:cds;Parent=Msa1030580-mRNA-1 |
| chr7_1 | CDS | 64769819 | 64770003 | 64769819 | ID=Msa1030580-mRNA-1:cds;Parent=Msa1030580-mRNA-1 |
| chr7_1 | CDS | 64769327 | 64769386 | 64769327 | ID=Msa1030580-mRNA-1:cds;Parent=Msa1030580-mRNA-1 |
| chr7_1 | CDS | 64768786 | 64769067 | 64768786 | ID=Msa1030580-mRNA-1:cds;Parent=Msa1030580-mRNA-1 |
| chr7_1 | CDS | 64768614 | 64768709 | 64768614 | ID=Msa1030580-mRNA-1:cds;Parent=Msa1030580-mRNA-1 |
| chr7_1 | CDS | 64768317 | 64768513 | 64768317 | ID=Msa1030580-mRNA-1:cds;Parent=Msa1030580-mRNA-1 |
| chr7_1 | CDS | 64767963 | 64768188 | 64767963 | ID=Msa1030580-mRNA-1:cds;Parent=Msa1030580-mRNA-1 |
| chr7_1 | three_prime_UTR | 64767749 | 64767962 | 64767749 | ID=Msa1030580-mRNA-1:three_prime_utr;Parent=Msa1030580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
