Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1032900 | XP_003624845.1 | 90.114 | 263 | 13 | 3 | 1 | 261 | 1 | 252 | 8.29e-157 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1032900 | Q2HUI2 | 90.114 | 263 | 13 | 3 | 1 | 261 | 1 | 252 | 3.96e-157 | 447 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0615850 | Msa1032900 | 0.804358 | 2.244172e-49 | -8.615850e-47 |
| Msa0702120 | Msa1032900 | 0.800903 | 1.158528e-48 | -8.615850e-47 |
| Msa0126760 | Msa1032900 | 0.814438 | 1.540868e-51 | -8.615850e-47 |
| Msa1032900 | Msa1070900 | 0.807528 | 4.836327e-50 | -8.615850e-47 |
| Msa1032900 | Msa1070930 | 0.802248 | 6.137823e-49 | -8.615850e-47 |
| Msa1032900 | Msa1280020 | 0.800082 | 1.702635e-48 | -8.615850e-47 |
| Msa1032900 | Msa1427020 | 0.817559 | 3.096530e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1032900 | MtrunA17_Chr7g0255071 | 90.114 | 263 | 13 | 3 | 1 | 261 | 1 | 252 | 7.62e-161 | 447 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1032900 | AT2G41120.1 | 62.983 | 181 | 59 | 2 | 86 | 260 | 79 | 257 | 1.40e-79 | 242 |
Find 62 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGATATTTCAGAAGTTT+TGG | 0.241682 | 7_1:-68030599 | Msa1032900:CDS |
| GATGCAGTGGCTTTATTTAA+TGG | 0.263039 | 7_1:-68030947 | Msa1032900:CDS |
| AGAAAGATCCTATCAACTTA+TGG | 0.267805 | 7_1:-68030235 | Msa1032900:CDS |
| CCATGAATTAGTGTTCTTGA+TGG | 0.287810 | 7_1:+68030866 | None:intergenic |
| TTCTGCCCTCAAGGGTCTAA+TGG | 0.318799 | 7_1:-68030144 | Msa1032900:CDS |
| TTGAAATTCAGGTGCTGCTT+TGG | 0.329593 | 7_1:+68031064 | None:intergenic |
| TATATGGTGGCTACTACTTC+AGG | 0.362311 | 7_1:+68029935 | None:intergenic |
| GAAAGATCCTATCAACTTAT+GGG | 0.382085 | 7_1:-68030234 | Msa1032900:CDS |
| ATTTCATCACCTATTCAATC+AGG | 0.383372 | 7_1:-68030822 | Msa1032900:intron |
| ATGACTATCTTGAGTCCCTT+TGG | 0.389670 | 7_1:-68030904 | Msa1032900:CDS |
| AAATGAGGAAATTGAAAGTA+AGG | 0.398950 | 7_1:+68031133 | None:intergenic |
| AACTTAAGAAACGGTCCATT+AGG | 0.418611 | 7_1:+68030625 | None:intergenic |
| AAAGGAGCTATGATGGAGTT+AGG | 0.426245 | 7_1:-68030682 | Msa1032900:CDS |
| TATTGAAAACCTGATTGAAT+AGG | 0.432347 | 7_1:+68030813 | None:intergenic |
| CCATCAAGAACACTAATTCA+TGG | 0.433044 | 7_1:-68030866 | Msa1032900:CDS |
| CTCCAAGGGCAAAGCTTCCC+AGG | 0.433451 | 7_1:-68030110 | Msa1032900:CDS |
| TACATTGTGTTCTGCCCTCA+AGG | 0.434776 | 7_1:-68030153 | Msa1032900:CDS |
| CTTTGCCCTTGGAGCTTCAG+TGG | 0.439060 | 7_1:+68030119 | None:intergenic |
| GAAAGTAAGGATGATAAGGT+TGG | 0.443204 | 7_1:+68031146 | None:intergenic |
| ATATTCTCCCATAAGTTGAT+AGG | 0.447945 | 7_1:+68030227 | None:intergenic |
| TGCTGAATATAGAATCATAA+AGG | 0.459099 | 7_1:-68030700 | Msa1032900:intron |
| CAGCTAACTCTATCTGTGTC+TGG | 0.459791 | 7_1:+68030566 | None:intergenic |
| GAAGAAGATGATGATGAAGA+TGG | 0.465069 | 7_1:+68031199 | None:intergenic |
| AATTGAAAGTAAGGATGATA+AGG | 0.475981 | 7_1:+68031142 | None:intergenic |
| TGCTGCTTTGGATAAGTCAC+TGG | 0.477277 | 7_1:+68031076 | None:intergenic |
| GAATCATAAAGGAGCTATGA+TGG | 0.481422 | 7_1:-68030689 | Msa1032900:CDS |
| CATGGTGGAGTAAGAGTGAG+AGG | 0.483063 | 7_1:+68031106 | None:intergenic |
| AGCCTGGGAAGCTTTGCCCT+TGG | 0.483988 | 7_1:+68030108 | None:intergenic |
| AGAAAGATGGAGTTTCCTAA+TGG | 0.486703 | 7_1:-68030640 | Msa1032900:CDS |
| AATCGTCAAGGATTACATGC+TGG | 0.488067 | 7_1:-68029994 | Msa1032900:CDS |
| ATCGTCAAGGATTACATGCT+GGG | 0.489589 | 7_1:-68029993 | Msa1032900:CDS |
| GATAAGGTTGGGATGAGGTA+TGG | 0.498354 | 7_1:+68031158 | None:intergenic |
| CTCTTCAGCATTGTGCCAAA+GGG | 0.501801 | 7_1:+68030889 | None:intergenic |
| CGTGTATACGATCTAGAACT+TGG | 0.502260 | 7_1:-68030192 | Msa1032900:CDS |
| AAAGTAAGGATGATAAGGTT+GGG | 0.506392 | 7_1:+68031147 | None:intergenic |
| TCTTTCTCAAACTTAAGAAA+CGG | 0.509201 | 7_1:+68030616 | None:intergenic |
| TTCTGAGGTAGCATTAAGCC+TGG | 0.518926 | 7_1:+68030092 | None:intergenic |
| TGGCACCATTAGACCCTTGA+GGG | 0.520483 | 7_1:+68030139 | None:intergenic |
| AGAGTGAGAGGTTTGAAATG+AGG | 0.522752 | 7_1:+68031118 | None:intergenic |
| CTTATGGGAGAATATGCTGC+AGG | 0.524192 | 7_1:-68030219 | Msa1032900:CDS |
| GCTCTTCAGCATTGTGCCAA+AGG | 0.529216 | 7_1:+68030888 | None:intergenic |
| GGAATACTGCAATGTGCAGT+TGG | 0.536785 | 7_1:-68030845 | Msa1032900:CDS |
| TGATGATATTTGTGTTGCAA+TGG | 0.545164 | 7_1:-68030265 | Msa1032900:CDS |
| CTCACACCATTCATCATCCA+TGG | 0.551327 | 7_1:-68031230 | Msa1032900:exon |
| CTTGAGCAAGCATCGCAGAA+TGG | 0.575030 | 7_1:-68029961 | Msa1032900:CDS |
| TGGTGCCACTGAAGCTCCAA+GGG | 0.577264 | 7_1:-68030124 | Msa1032900:CDS |
| AGGATGATAAGGTTGGGATG+AGG | 0.579746 | 7_1:+68031153 | None:intergenic |
| ACATTGTGTTCTGCCCTCAA+GGG | 0.584678 | 7_1:-68030152 | Msa1032900:CDS |
| GCTATGATGGAGTTAGGAGA+GGG | 0.584798 | 7_1:-68030676 | Msa1032900:CDS |
| ATGGTGCCACTGAAGCTCCA+AGG | 0.586032 | 7_1:-68030125 | Msa1032900:CDS |
| GAAGAGCCATGGATGATGAA+TGG | 0.598431 | 7_1:+68031224 | None:intergenic |
| GCACAACTTTGATGATGCAG+TGG | 0.616276 | 7_1:-68030960 | Msa1032900:CDS |
| AGCTATGATGGAGTTAGGAG+AGG | 0.616951 | 7_1:-68030677 | Msa1032900:CDS |
| ACTGTGTAAACTGAGAAAGA+TGG | 0.626016 | 7_1:-68030653 | Msa1032900:CDS |
| GTGGCACCATTAGACCCTTG+AGG | 0.631454 | 7_1:+68030138 | None:intergenic |
| ATATGCTACAAGATGTTCTG+AGG | 0.636965 | 7_1:+68030077 | None:intergenic |
| GCAGTGGCTTTATTTAATGG+TGG | 0.646255 | 7_1:-68030944 | Msa1032900:CDS |
| TCTGAGGTAGCATTAAGCCT+GGG | 0.648996 | 7_1:+68030093 | None:intergenic |
| TTATGGGAGAATATGCTGCA+GGG | 0.653319 | 7_1:-68030218 | Msa1032900:CDS |
| TGAAGATGGAAGAAGAGCCA+TGG | 0.654378 | 7_1:+68031213 | None:intergenic |
| GTCACTGGATTGAAACATGG+TGG | 0.659321 | 7_1:+68031091 | None:intergenic |
| TAAGTCACTGGATTGAAACA+TGG | 0.724863 | 7_1:+68031088 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATGAATGGAAATA+TGG | - | chr7_1:68029989-68030008 | Msa1032900:CDS | 15.0% |
| !!! | TCATTTTATTTTTAGTGTTA+TGG | - | chr7_1:68030489-68030508 | Msa1032900:intron | 15.0% |
| !! | ATAAAAAATGAATGGAAATA+TGG | - | chr7_1:68029989-68030008 | Msa1032900:CDS | 15.0% |
| !!! | TCATTTTATTTTTAGTGTTA+TGG | - | chr7_1:68030489-68030508 | Msa1032900:intron | 15.0% |
| !!! | ATTTCCATTCATTTTTTATG+TGG | + | chr7_1:68029988-68030007 | None:intergenic | 20.0% |
| !! | GAATTAAATCTAATCTTGAA+TGG | + | chr7_1:68030918-68030937 | None:intergenic | 20.0% |
| !! | ATTCACAAATGTTATATGAT+TGG | - | chr7_1:68030934-68030953 | Msa1032900:CDS | 20.0% |
| !! | TTCACAAATGTTATATGATT+GGG | - | chr7_1:68030935-68030954 | Msa1032900:CDS | 20.0% |
| !!! | ATTTCCATTCATTTTTTATG+TGG | + | chr7_1:68029988-68030007 | None:intergenic | 20.0% |
| !! | GAATTAAATCTAATCTTGAA+TGG | + | chr7_1:68030918-68030937 | None:intergenic | 20.0% |
| !! | ATTCACAAATGTTATATGAT+TGG | - | chr7_1:68030934-68030953 | Msa1032900:CDS | 20.0% |
| !! | TTCACAAATGTTATATGATT+GGG | - | chr7_1:68030935-68030954 | Msa1032900:CDS | 20.0% |
| !!! | ATTCATTTTTTATGTGGTTG+GGG | + | chr7_1:68029982-68030001 | None:intergenic | 25.0% |
| !!! | CATTCATTTTTTATGTGGTT+GGG | + | chr7_1:68029983-68030002 | None:intergenic | 25.0% |
| ! | AATTGAAAGTAAGGATGATA+AGG | + | chr7_1:68030127-68030146 | None:intergenic | 25.0% |
| ! | AAATGAGGAAATTGAAAGTA+AGG | + | chr7_1:68030136-68030155 | None:intergenic | 25.0% |
| ! | TATTGAAAACCTGATTGAAT+AGG | + | chr7_1:68030456-68030475 | None:intergenic | 25.0% |
| !!! | TTTAGTGTTATGGTTTTGTT+TGG | - | chr7_1:68030499-68030518 | Msa1032900:intron | 25.0% |
| ! | TGCTGAATATAGAATCATAA+AGG | - | chr7_1:68030566-68030585 | Msa1032900:CDS | 25.0% |
| ! | TCTTTCTCAAACTTAAGAAA+CGG | + | chr7_1:68030653-68030672 | None:intergenic | 25.0% |
| !! | GAAAGATATTTCAGAAGTTT+TGG | - | chr7_1:68030667-68030686 | Msa1032900:CDS | 25.0% |
| ! | GAATACAAATCATTATGCAT+AGG | - | chr7_1:68030809-68030828 | Msa1032900:intron | 25.0% |
| ! | AAATGTTATATGATTGGGTT+TGG | - | chr7_1:68030940-68030959 | Msa1032900:CDS | 25.0% |
| !!! | ATTCATTTTTTATGTGGTTG+GGG | + | chr7_1:68029982-68030001 | None:intergenic | 25.0% |
| !!! | CATTCATTTTTTATGTGGTT+GGG | + | chr7_1:68029983-68030002 | None:intergenic | 25.0% |
| ! | AATTGAAAGTAAGGATGATA+AGG | + | chr7_1:68030127-68030146 | None:intergenic | 25.0% |
| ! | AAATGAGGAAATTGAAAGTA+AGG | + | chr7_1:68030136-68030155 | None:intergenic | 25.0% |
| ! | TATTGAAAACCTGATTGAAT+AGG | + | chr7_1:68030456-68030475 | None:intergenic | 25.0% |
| !!! | TTTAGTGTTATGGTTTTGTT+TGG | - | chr7_1:68030499-68030518 | Msa1032900:intron | 25.0% |
| ! | TGCTGAATATAGAATCATAA+AGG | - | chr7_1:68030566-68030585 | Msa1032900:CDS | 25.0% |
| ! | TCTTTCTCAAACTTAAGAAA+CGG | + | chr7_1:68030653-68030672 | None:intergenic | 25.0% |
| !! | GAAAGATATTTCAGAAGTTT+TGG | - | chr7_1:68030667-68030686 | Msa1032900:CDS | 25.0% |
| ! | GAATACAAATCATTATGCAT+AGG | - | chr7_1:68030809-68030828 | Msa1032900:intron | 25.0% |
| ! | AAATGTTATATGATTGGGTT+TGG | - | chr7_1:68030940-68030959 | Msa1032900:CDS | 25.0% |
| !!! | CCATTCATTTTTTATGTGGT+TGG | + | chr7_1:68029984-68030003 | None:intergenic | 30.0% |
| CCAACCACATAAAAAATGAA+TGG | - | chr7_1:68029981-68030000 | Msa1032900:CDS | 30.0% | |
| !! | AGGTATGGTAGATATTTTTG+AGG | + | chr7_1:68030096-68030115 | None:intergenic | 30.0% |
| AAAGTAAGGATGATAAGGTT+GGG | + | chr7_1:68030122-68030141 | None:intergenic | 30.0% | |
| !!! | AGTTGTTGCTTTTGAAATTC+AGG | + | chr7_1:68030216-68030235 | None:intergenic | 30.0% |
| !!! | AGCTTTTTGTTGTTTCATAC+AGG | - | chr7_1:68030239-68030258 | Msa1032900:CDS | 30.0% |
| ATTTCATCACCTATTCAATC+AGG | - | chr7_1:68030444-68030463 | Msa1032900:intron | 30.0% | |
| CATTCCAAACTTGAAATGTT+AGG | - | chr7_1:68030732-68030751 | Msa1032900:intron | 30.0% | |
| !! | GATACCTAACATTTCAAGTT+TGG | + | chr7_1:68030739-68030758 | None:intergenic | 30.0% |
| AGATACATGAACTTCAGATT+GGG | + | chr7_1:68030886-68030905 | None:intergenic | 30.0% | |
| AAGATACATGAACTTCAGAT+TGG | + | chr7_1:68030887-68030906 | None:intergenic | 30.0% | |
| ATCTAATCTTGAATGGTAAC+AGG | + | chr7_1:68030911-68030930 | None:intergenic | 30.0% | |
| ! | TTCTTAACTTGAATTTGAGC+AGG | - | chr7_1:68030975-68030994 | Msa1032900:CDS | 30.0% |
| TGATGATATTTGTGTTGCAA+TGG | - | chr7_1:68031001-68031020 | Msa1032900:CDS | 30.0% | |
| AGAAAGATCCTATCAACTTA+TGG | - | chr7_1:68031031-68031050 | Msa1032900:CDS | 30.0% | |
| GAAAGATCCTATCAACTTAT+GGG | - | chr7_1:68031032-68031051 | Msa1032900:CDS | 30.0% | |
| !! | ATATTCTCCCATAAGTTGAT+AGG | + | chr7_1:68031042-68031061 | None:intergenic | 30.0% |
| !!! | CCATTCATTTTTTATGTGGT+TGG | + | chr7_1:68029984-68030003 | None:intergenic | 30.0% |
| CCAACCACATAAAAAATGAA+TGG | - | chr7_1:68029981-68030000 | Msa1032900:CDS | 30.0% | |
| !! | AGGTATGGTAGATATTTTTG+AGG | + | chr7_1:68030096-68030115 | None:intergenic | 30.0% |
| AAAGTAAGGATGATAAGGTT+GGG | + | chr7_1:68030122-68030141 | None:intergenic | 30.0% | |
| !!! | AGTTGTTGCTTTTGAAATTC+AGG | + | chr7_1:68030216-68030235 | None:intergenic | 30.0% |
| !!! | AGCTTTTTGTTGTTTCATAC+AGG | - | chr7_1:68030239-68030258 | Msa1032900:CDS | 30.0% |
| ATTTCATCACCTATTCAATC+AGG | - | chr7_1:68030444-68030463 | Msa1032900:intron | 30.0% | |
| CATTCCAAACTTGAAATGTT+AGG | - | chr7_1:68030732-68030751 | Msa1032900:intron | 30.0% | |
| !! | GATACCTAACATTTCAAGTT+TGG | + | chr7_1:68030739-68030758 | None:intergenic | 30.0% |
| AGATACATGAACTTCAGATT+GGG | + | chr7_1:68030886-68030905 | None:intergenic | 30.0% | |
| AAGATACATGAACTTCAGAT+TGG | + | chr7_1:68030887-68030906 | None:intergenic | 30.0% | |
| ATCTAATCTTGAATGGTAAC+AGG | + | chr7_1:68030911-68030930 | None:intergenic | 30.0% | |
| ! | TTCTTAACTTGAATTTGAGC+AGG | - | chr7_1:68030975-68030994 | Msa1032900:CDS | 30.0% |
| TGATGATATTTGTGTTGCAA+TGG | - | chr7_1:68031001-68031020 | Msa1032900:CDS | 30.0% | |
| AGAAAGATCCTATCAACTTA+TGG | - | chr7_1:68031031-68031050 | Msa1032900:CDS | 30.0% | |
| GAAAGATCCTATCAACTTAT+GGG | - | chr7_1:68031032-68031051 | Msa1032900:CDS | 30.0% | |
| !! | ATATTCTCCCATAAGTTGAT+AGG | + | chr7_1:68031042-68031061 | None:intergenic | 30.0% |
| ! | GAAGAAGATGATGATGAAGA+TGG | + | chr7_1:68030070-68030089 | None:intergenic | 35.0% |
| GAAAGTAAGGATGATAAGGT+TGG | + | chr7_1:68030123-68030142 | None:intergenic | 35.0% | |
| TAAGTCACTGGATTGAAACA+TGG | + | chr7_1:68030181-68030200 | None:intergenic | 35.0% | |
| !! | GATGCAGTGGCTTTATTTAA+TGG | - | chr7_1:68030319-68030338 | Msa1032900:intron | 35.0% |
| CCATGAATTAGTGTTCTTGA+TGG | + | chr7_1:68030403-68030422 | None:intergenic | 35.0% | |
| CCATCAAGAACACTAATTCA+TGG | - | chr7_1:68030400-68030419 | Msa1032900:intron | 35.0% | |
| GAATCATAAAGGAGCTATGA+TGG | - | chr7_1:68030577-68030596 | Msa1032900:CDS | 35.0% | |
| ACTGTGTAAACTGAGAAAGA+TGG | - | chr7_1:68030613-68030632 | Msa1032900:CDS | 35.0% | |
| AGAAAGATGGAGTTTCCTAA+TGG | - | chr7_1:68030626-68030645 | Msa1032900:CDS | 35.0% | |
| AACTTAAGAAACGGTCCATT+AGG | + | chr7_1:68030644-68030663 | None:intergenic | 35.0% | |
| ATATGCTACAAGATGTTCTG+AGG | + | chr7_1:68031192-68031211 | None:intergenic | 35.0% | |
| !!! | CCTTGACGATTTTTTACAGT+AGG | + | chr7_1:68031263-68031282 | None:intergenic | 35.0% |
| CCTACTGTAAAAAATCGTCA+AGG | - | chr7_1:68031260-68031279 | Msa1032900:five_prime_UTR | 35.0% | |
| ! | GAAGAAGATGATGATGAAGA+TGG | + | chr7_1:68030070-68030089 | None:intergenic | 35.0% |
| GAAAGTAAGGATGATAAGGT+TGG | + | chr7_1:68030123-68030142 | None:intergenic | 35.0% | |
| TAAGTCACTGGATTGAAACA+TGG | + | chr7_1:68030181-68030200 | None:intergenic | 35.0% | |
| !! | GATGCAGTGGCTTTATTTAA+TGG | - | chr7_1:68030319-68030338 | Msa1032900:intron | 35.0% |
| CCATGAATTAGTGTTCTTGA+TGG | + | chr7_1:68030403-68030422 | None:intergenic | 35.0% | |
| CCATCAAGAACACTAATTCA+TGG | - | chr7_1:68030400-68030419 | Msa1032900:intron | 35.0% | |
| GAATCATAAAGGAGCTATGA+TGG | - | chr7_1:68030577-68030596 | Msa1032900:CDS | 35.0% | |
| ACTGTGTAAACTGAGAAAGA+TGG | - | chr7_1:68030613-68030632 | Msa1032900:CDS | 35.0% | |
| AGAAAGATGGAGTTTCCTAA+TGG | - | chr7_1:68030626-68030645 | Msa1032900:CDS | 35.0% | |
| AACTTAAGAAACGGTCCATT+AGG | + | chr7_1:68030644-68030663 | None:intergenic | 35.0% | |
| ATATGCTACAAGATGTTCTG+AGG | + | chr7_1:68031192-68031211 | None:intergenic | 35.0% | |
| !!! | CCTTGACGATTTTTTACAGT+AGG | + | chr7_1:68031263-68031282 | None:intergenic | 35.0% |
| CCTACTGTAAAAAATCGTCA+AGG | - | chr7_1:68031260-68031279 | Msa1032900:five_prime_UTR | 35.0% | |
| !!! | CATTTTTTATGTGGTTGGGG+TGG | + | chr7_1:68029979-68029998 | None:intergenic | 40.0% |
| ! | AGAGTGAGAGGTTTGAAATG+AGG | + | chr7_1:68030151-68030170 | None:intergenic | 40.0% |
| !! | TTGAAATTCAGGTGCTGCTT+TGG | + | chr7_1:68030205-68030224 | None:intergenic | 40.0% |
| !! | GCAGTGGCTTTATTTAATGG+TGG | - | chr7_1:68030322-68030341 | Msa1032900:intron | 40.0% |
| ATGACTATCTTGAGTCCCTT+TGG | - | chr7_1:68030362-68030381 | Msa1032900:intron | 40.0% | |
| ! | AAAGGAGCTATGATGGAGTT+AGG | - | chr7_1:68030584-68030603 | Msa1032900:CDS | 40.0% |
| TTATGGGAGAATATGCTGCA+GGG | - | chr7_1:68031048-68031067 | Msa1032900:CDS | 40.0% | |
| ! | CGTGTATACGATCTAGAACT+TGG | - | chr7_1:68031074-68031093 | Msa1032900:CDS | 40.0% |
| AATCGTCAAGGATTACATGC+TGG | - | chr7_1:68031272-68031291 | Msa1032900:five_prime_UTR | 40.0% | |
| ATCGTCAAGGATTACATGCT+GGG | - | chr7_1:68031273-68031292 | Msa1032900:five_prime_UTR | 40.0% | |
| !!! | CATTTTTTATGTGGTTGGGG+TGG | + | chr7_1:68029979-68029998 | None:intergenic | 40.0% |
| ! | AGAGTGAGAGGTTTGAAATG+AGG | + | chr7_1:68030151-68030170 | None:intergenic | 40.0% |
| !! | TTGAAATTCAGGTGCTGCTT+TGG | + | chr7_1:68030205-68030224 | None:intergenic | 40.0% |
| !! | GCAGTGGCTTTATTTAATGG+TGG | - | chr7_1:68030322-68030341 | Msa1032900:intron | 40.0% |
| ATGACTATCTTGAGTCCCTT+TGG | - | chr7_1:68030362-68030381 | Msa1032900:intron | 40.0% | |
| ! | AAAGGAGCTATGATGGAGTT+AGG | - | chr7_1:68030584-68030603 | Msa1032900:CDS | 40.0% |
| TTATGGGAGAATATGCTGCA+GGG | - | chr7_1:68031048-68031067 | Msa1032900:CDS | 40.0% | |
| ! | CGTGTATACGATCTAGAACT+TGG | - | chr7_1:68031074-68031093 | Msa1032900:CDS | 40.0% |
| AATCGTCAAGGATTACATGC+TGG | - | chr7_1:68031272-68031291 | Msa1032900:five_prime_UTR | 40.0% | |
| ATCGTCAAGGATTACATGCT+GGG | - | chr7_1:68031273-68031292 | Msa1032900:five_prime_UTR | 40.0% | |
| CTCACACCATTCATCATCCA+TGG | - | chr7_1:68030036-68030055 | Msa1032900:intron | 45.0% | |
| GAAGAGCCATGGATGATGAA+TGG | + | chr7_1:68030045-68030064 | None:intergenic | 45.0% | |
| TGAAGATGGAAGAAGAGCCA+TGG | + | chr7_1:68030056-68030075 | None:intergenic | 45.0% | |
| GATAAGGTTGGGATGAGGTA+TGG | + | chr7_1:68030111-68030130 | None:intergenic | 45.0% | |
| AGGATGATAAGGTTGGGATG+AGG | + | chr7_1:68030116-68030135 | None:intergenic | 45.0% | |
| GTCACTGGATTGAAACATGG+TGG | + | chr7_1:68030178-68030197 | None:intergenic | 45.0% | |
| !! | TGCTGCTTTGGATAAGTCAC+TGG | + | chr7_1:68030193-68030212 | None:intergenic | 45.0% |
| !! | GCACAACTTTGATGATGCAG+TGG | - | chr7_1:68030306-68030325 | Msa1032900:intron | 45.0% |
| CTCTTCAGCATTGTGCCAAA+GGG | + | chr7_1:68030380-68030399 | None:intergenic | 45.0% | |
| GGAATACTGCAATGTGCAGT+TGG | - | chr7_1:68030421-68030440 | Msa1032900:intron | 45.0% | |
| ! | AGCTATGATGGAGTTAGGAG+AGG | - | chr7_1:68030589-68030608 | Msa1032900:CDS | 45.0% |
| ! | GCTATGATGGAGTTAGGAGA+GGG | - | chr7_1:68030590-68030609 | Msa1032900:CDS | 45.0% |
| CAGCTAACTCTATCTGTGTC+TGG | + | chr7_1:68030703-68030722 | None:intergenic | 45.0% | |
| CTTATGGGAGAATATGCTGC+AGG | - | chr7_1:68031047-68031066 | Msa1032900:CDS | 45.0% | |
| TACATTGTGTTCTGCCCTCA+AGG | - | chr7_1:68031113-68031132 | Msa1032900:CDS | 45.0% | |
| ACATTGTGTTCTGCCCTCAA+GGG | - | chr7_1:68031114-68031133 | Msa1032900:CDS | 45.0% | |
| ! | TCTGAGGTAGCATTAAGCCT+GGG | + | chr7_1:68031176-68031195 | None:intergenic | 45.0% |
| !! | TTCTGAGGTAGCATTAAGCC+TGG | + | chr7_1:68031177-68031196 | None:intergenic | 45.0% |
| CTCACACCATTCATCATCCA+TGG | - | chr7_1:68030036-68030055 | Msa1032900:intron | 45.0% | |
| GAAGAGCCATGGATGATGAA+TGG | + | chr7_1:68030045-68030064 | None:intergenic | 45.0% | |
| TGAAGATGGAAGAAGAGCCA+TGG | + | chr7_1:68030056-68030075 | None:intergenic | 45.0% | |
| GATAAGGTTGGGATGAGGTA+TGG | + | chr7_1:68030111-68030130 | None:intergenic | 45.0% | |
| AGGATGATAAGGTTGGGATG+AGG | + | chr7_1:68030116-68030135 | None:intergenic | 45.0% | |
| GTCACTGGATTGAAACATGG+TGG | + | chr7_1:68030178-68030197 | None:intergenic | 45.0% | |
| !! | TGCTGCTTTGGATAAGTCAC+TGG | + | chr7_1:68030193-68030212 | None:intergenic | 45.0% |
| !! | GCACAACTTTGATGATGCAG+TGG | - | chr7_1:68030306-68030325 | Msa1032900:intron | 45.0% |
| CTCTTCAGCATTGTGCCAAA+GGG | + | chr7_1:68030380-68030399 | None:intergenic | 45.0% | |
| GGAATACTGCAATGTGCAGT+TGG | - | chr7_1:68030421-68030440 | Msa1032900:intron | 45.0% | |
| ! | AGCTATGATGGAGTTAGGAG+AGG | - | chr7_1:68030589-68030608 | Msa1032900:CDS | 45.0% |
| ! | GCTATGATGGAGTTAGGAGA+GGG | - | chr7_1:68030590-68030609 | Msa1032900:CDS | 45.0% |
| CAGCTAACTCTATCTGTGTC+TGG | + | chr7_1:68030703-68030722 | None:intergenic | 45.0% | |
| CTTATGGGAGAATATGCTGC+AGG | - | chr7_1:68031047-68031066 | Msa1032900:CDS | 45.0% | |
| TACATTGTGTTCTGCCCTCA+AGG | - | chr7_1:68031113-68031132 | Msa1032900:CDS | 45.0% | |
| ACATTGTGTTCTGCCCTCAA+GGG | - | chr7_1:68031114-68031133 | Msa1032900:CDS | 45.0% | |
| ! | TCTGAGGTAGCATTAAGCCT+GGG | + | chr7_1:68031176-68031195 | None:intergenic | 45.0% |
| !! | TTCTGAGGTAGCATTAAGCC+TGG | + | chr7_1:68031177-68031196 | None:intergenic | 45.0% |
| ! | CATGGTGGAGTAAGAGTGAG+AGG | + | chr7_1:68030163-68030182 | None:intergenic | 50.0% |
| GCTCTTCAGCATTGTGCCAA+AGG | + | chr7_1:68030381-68030400 | None:intergenic | 50.0% | |
| TTCTGCCCTCAAGGGTCTAA+TGG | - | chr7_1:68031122-68031141 | Msa1032900:CDS | 50.0% | |
| TGGCACCATTAGACCCTTGA+GGG | + | chr7_1:68031130-68031149 | None:intergenic | 50.0% | |
| ! | CTTGAGCAAGCATCGCAGAA+TGG | - | chr7_1:68031305-68031324 | Msa1032900:five_prime_UTR | 50.0% |
| ! | CATGGTGGAGTAAGAGTGAG+AGG | + | chr7_1:68030163-68030182 | None:intergenic | 50.0% |
| GCTCTTCAGCATTGTGCCAA+AGG | + | chr7_1:68030381-68030400 | None:intergenic | 50.0% | |
| TTCTGCCCTCAAGGGTCTAA+TGG | - | chr7_1:68031122-68031141 | Msa1032900:CDS | 50.0% | |
| TGGCACCATTAGACCCTTGA+GGG | + | chr7_1:68031130-68031149 | None:intergenic | 50.0% | |
| ! | CTTGAGCAAGCATCGCAGAA+TGG | - | chr7_1:68031305-68031324 | Msa1032900:five_prime_UTR | 50.0% |
| GTGGCACCATTAGACCCTTG+AGG | + | chr7_1:68031131-68031150 | None:intergenic | 55.0% | |
| !! | ATGGTGCCACTGAAGCTCCA+AGG | - | chr7_1:68031141-68031160 | Msa1032900:CDS | 55.0% |
| !! | TGGTGCCACTGAAGCTCCAA+GGG | - | chr7_1:68031142-68031161 | Msa1032900:CDS | 55.0% |
| CTTTGCCCTTGGAGCTTCAG+TGG | + | chr7_1:68031150-68031169 | None:intergenic | 55.0% | |
| GTGGCACCATTAGACCCTTG+AGG | + | chr7_1:68031131-68031150 | None:intergenic | 55.0% | |
| !! | ATGGTGCCACTGAAGCTCCA+AGG | - | chr7_1:68031141-68031160 | Msa1032900:CDS | 55.0% |
| !! | TGGTGCCACTGAAGCTCCAA+GGG | - | chr7_1:68031142-68031161 | Msa1032900:CDS | 55.0% |
| CTTTGCCCTTGGAGCTTCAG+TGG | + | chr7_1:68031150-68031169 | None:intergenic | 55.0% | |
| CTCCAAGGGCAAAGCTTCCC+AGG | - | chr7_1:68031156-68031175 | Msa1032900:CDS | 60.0% | |
| AGCCTGGGAAGCTTTGCCCT+TGG | + | chr7_1:68031161-68031180 | None:intergenic | 60.0% | |
| CTCCAAGGGCAAAGCTTCCC+AGG | - | chr7_1:68031156-68031175 | Msa1032900:CDS | 60.0% | |
| AGCCTGGGAAGCTTTGCCCT+TGG | + | chr7_1:68031161-68031180 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 68029948 | 68031340 | 68029948 | ID=Msa1032900;Name=Msa1032900 |
| chr7_1 | mRNA | 68029948 | 68031340 | 68029948 | ID=Msa1032900-mRNA-1;Parent=Msa1032900;Name=Msa1032900-mRNA-1;_AED=0.15;_eAED=0.15;_QI=107|0.66|0.5|1|1|1|4|0|288 |
| chr7_1 | exon | 68029948 | 68030032 | 68029948 | ID=Msa1032900-mRNA-1:exon:15769;Parent=Msa1032900-mRNA-1 |
| chr7_1 | exon | 68030069 | 68030291 | 68030069 | ID=Msa1032900-mRNA-1:exon:15768;Parent=Msa1032900-mRNA-1 |
| chr7_1 | exon | 68030563 | 68030710 | 68030563 | ID=Msa1032900-mRNA-1:exon:15767;Parent=Msa1032900-mRNA-1 |
| chr7_1 | exon | 68030823 | 68031340 | 68030823 | ID=Msa1032900-mRNA-1:exon:15766;Parent=Msa1032900-mRNA-1 |
| chr7_1 | five_prime_UTR | 68031234 | 68031340 | 68031234 | ID=Msa1032900-mRNA-1:five_prime_utr;Parent=Msa1032900-mRNA-1 |
| chr7_1 | CDS | 68030823 | 68031233 | 68030823 | ID=Msa1032900-mRNA-1:cds;Parent=Msa1032900-mRNA-1 |
| chr7_1 | CDS | 68030563 | 68030710 | 68030563 | ID=Msa1032900-mRNA-1:cds;Parent=Msa1032900-mRNA-1 |
| chr7_1 | CDS | 68030069 | 68030291 | 68030069 | ID=Msa1032900-mRNA-1:cds;Parent=Msa1032900-mRNA-1 |
| chr7_1 | CDS | 68029948 | 68030032 | 68029948 | ID=Msa1032900-mRNA-1:cds;Parent=Msa1032900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
