AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1427020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427020 MtrunA17_Chr8g0382711 98.592 213 3 0 1 213 1 213 1.62e-155 429
Msa1427020 MtrunA17_Chr4g0052911 53.846 130 59 1 76 204 108 237 1.10e-42 144
Msa1427020 MtrunA17_Chr8g0339171 40.000 110 55 2 104 213 46 144 1.09e-19 82.0
Msa1427020 MtrunA17_Chr4g0033841 28.090 178 111 4 36 203 48 218 5.01e-17 76.6
Msa1427020 MtrunA17_Chr5g0396231 39.623 106 50 4 102 206 407 499 1.61e-15 74.7
Msa1427020 MtrunA17_Chr7g0234801 38.235 102 50 3 108 208 52 141 8.71e-13 66.6
Msa1427020 MtrunA17_Chr8g0377771 36.885 122 63 4 89 208 36 145 1.47e-12 65.9
Msa1427020 MtrunA17_Chr8g0339141 36.449 107 55 3 103 208 53 147 8.32e-12 63.9
Msa1427020 MtrunA17_Chr1g0179681 35.075 134 66 5 81 206 123 243 1.34e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427020 AT4G39710.1 76.471 170 40 0 44 213 48 217 1.11e-94 275
Msa1427020 AT4G39710.3 76.471 170 40 0 44 213 48 217 1.11e-94 275
Msa1427020 AT4G39710.2 75.630 119 29 0 44 162 48 166 2.27e-62 192
Msa1427020 AT5G45680.1 56.911 123 53 0 83 205 84 206 6.53e-44 146
Msa1427020 AT5G48580.1 39.806 103 51 2 104 206 48 139 1.65e-18 79.3
Msa1427020 AT3G25220.1 40.777 103 50 2 104 206 48 139 1.04e-17 77.0
Msa1427020 AT2G43560.1 32.317 164 85 5 49 203 66 212 1.15e-15 73.2
Msa1427020 AT2G43560.2 32.317 164 85 5 49 203 10 156 1.34e-15 72.0
Msa1427020 AT5G05420.1 37.736 106 52 4 102 206 50 142 1.21e-14 68.6
Msa1427020 AT3G25230.1 37.008 127 66 4 84 208 32 146 3.18e-13 68.2
Msa1427020 AT3G25230.2 37.008 127 66 4 84 208 32 146 3.32e-13 68.2
Msa1427020 AT5G48570.1 36.634 101 53 2 108 208 65 154 1.26e-11 63.5
Msa1427020 AT3G10060.1 30.000 160 91 5 55 206 70 216 2.55e-11 61.2

Find 96 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATTGGATCAGGGAATTT+TGG 0.124572 tig0026114:+24196 Msa1427020:CDS
GGATCCTCTTTACTCTTAAA+AGG 0.137016 tig0026114:-25769 None:intergenic
CCAAAGATGAATCATGATTT+TGG 0.177029 tig0026114:+26002 Msa1427020:three_prime_UTR
AGTTAAAATGTACAATTTCT+TGG 0.227295 tig0026114:+26043 Msa1427020:three_prime_UTR
AATGTGAATTTCAGGTAATT+AGG 0.235234 tig0026114:+24174 Msa1427020:intron
TAAATTTGTTGGTCTTTATT+CGG 0.242676 tig0026114:+24844 Msa1427020:CDS
TTAAAAGGGGTATTCTATTC+AGG 0.254794 tig0026114:-25754 None:intergenic
GGATTAAAGATACAAGTAAT+AGG 0.266749 tig0026114:-25939 None:intergenic
TGCTGAGCATAACACCTTAT+TGG 0.271308 tig0026114:-23673 None:intergenic
TGCGATTATGTTGAGGGTTT+TGG 0.282156 tig0026114:+23864 Msa1427020:CDS
GGTAATTAGGGGATTGGATC+AGG 0.291509 tig0026114:+24187 Msa1427020:intron
GAGCTTAATTATGTTAAATC+TGG 0.297049 tig0026114:+23831 Msa1427020:CDS
GTTAGGCAGATTCTCCTTCC+TGG 0.307741 tig0026114:+25679 Msa1427020:three_prime_UTR
AAATTTGTTGGTCTTTATTC+GGG 0.311128 tig0026114:+24845 Msa1427020:CDS
CCAAAATCATGATTCATCTT+TGG 0.311610 tig0026114:-26002 None:intergenic
CTGTATGATATTAAATTTGT+TGG 0.318710 tig0026114:+24833 Msa1427020:CDS
CGTTAGTTGGAATTGGTATT+GGG 0.335154 tig0026114:+23718 Msa1427020:CDS
ATGTGAATTTCAGGTAATTA+GGG 0.335286 tig0026114:+24175 Msa1427020:intron
GAACCTGCAGGCTGCTTCTC+AGG 0.336346 tig0026114:+24373 Msa1427020:CDS
TTTGGTGATGAAGCTCCTTT+AGG 0.338411 tig0026114:+23882 Msa1427020:CDS
GAGAAGCAGCCTGCAGGTTC+AGG 0.345343 tig0026114:-24370 None:intergenic
ACACACCCTAAGATAGAAAA+TGG 0.350166 tig0026114:+23563 Msa1427020:exon
CTCTCATTCTCACTCTGTTC+AGG 0.375218 tig0026114:+23588 Msa1427020:CDS
AAGAAGCCGTTAGTTGGAAT+TGG 0.375819 tig0026114:+23711 Msa1427020:CDS
CCGTTAGTTGGAATTGGTAT+TGG 0.376392 tig0026114:+23717 Msa1427020:CDS
CATATGAACCGCACATGGAT+TGG 0.400176 tig0026114:+24911 Msa1427020:three_prime_UTR
CCTTCTTGTATGAAATTGAA+TGG 0.401384 tig0026114:+23633 Msa1427020:CDS
GATCCTCTTTACTCTTAAAA+GGG 0.410956 tig0026114:-25768 None:intergenic
CATGTCCGACTGCACTAAAC+AGG 0.418564 tig0026114:-25726 None:intergenic
AAGCTATAAAGTATCCAATA+AGG 0.422362 tig0026114:+23659 Msa1427020:CDS
AATTATGTTAAATCTGGGCT+TGG 0.422396 tig0026114:+23837 Msa1427020:CDS
ATTGTAGCAGCATGGGTAAT+GGG 0.427828 tig0026114:+23741 Msa1427020:CDS
AATTGTTTAGAGTAATGAAA+TGG 0.430565 tig0026114:+25625 Msa1427020:intron
ATTTCAGGTAATTAGGGGAT+TGG 0.431931 tig0026114:+24181 Msa1427020:intron
AACGAAAAGAAGCCGTTAGT+TGG 0.432641 tig0026114:+23705 Msa1427020:CDS
GGTTATTGCGATTATGTTGA+GGG 0.433499 tig0026114:+23858 Msa1427020:CDS
ATGATATGAGTAACTCCATT+TGG 0.450015 tig0026114:-23502 None:intergenic
GATTAAAGATACAAGTAATA+GGG 0.452910 tig0026114:-25938 None:intergenic
GGGATTAACGGCGTTGGATG+CGG 0.454068 tig0026114:+23761 Msa1427020:CDS
ATATGAACCGCACATGGATT+GGG 0.455362 tig0026114:+24912 Msa1427020:three_prime_UTR
AGCTTAATTATGTTAAATCT+GGG 0.462974 tig0026114:+23832 Msa1427020:CDS
CACAGAGGAAGAAGATCAAA+AGG 0.465127 tig0026114:-25960 None:intergenic
GTGTGTATATAGTTCTCTTA+AGG 0.477568 tig0026114:-23540 None:intergenic
AGCATGGGTAATGGGATTAA+CGG 0.477643 tig0026114:+23749 Msa1427020:CDS
AATAGGTGACTGCAATATAC+CGG 0.483379 tig0026114:+24796 Msa1427020:intron
ATTTCATACAAGAAGGAAAA+CGG 0.483988 tig0026114:-23626 None:intergenic
CCATTCAATTTCATACAAGA+AGG 0.487470 tig0026114:-23633 None:intergenic
CTAATATATATCACTGCACC+AGG 0.496741 tig0026114:-25795 None:intergenic
GATTGTAGCAGCATGGGTAA+TGG 0.497305 tig0026114:+23740 Msa1427020:CDS
ATTCCTCCATTGTTAGCGTA+TGG 0.502416 tig0026114:+24346 Msa1427020:CDS
TGATATATATTAGACAAGTC+TGG 0.509545 tig0026114:+25805 Msa1427020:three_prime_UTR
AGAAAGGATGGTATGCCAAA+TGG 0.512086 tig0026114:+23487 None:intergenic
TGGTTATTGCGATTATGTTG+AGG 0.512709 tig0026114:+23857 Msa1427020:CDS
AATTTAATACCTATCCGCAT+TGG 0.515893 tig0026114:-24236 None:intergenic
CTATTCCTGTTTAGTGCAGT+CGG 0.517728 tig0026114:+25721 Msa1427020:three_prime_UTR
AATTTGAGAGAGCTGGAACC+AGG 0.519696 tig0026114:-25697 None:intergenic
AAACCTGAGAAGCAGCCTGC+AGG 0.532161 tig0026114:-24376 None:intergenic
ATAGTAGTTATAAACGTGCT+AGG 0.536904 tig0026114:+24048 Msa1427020:CDS
TTAATACCTATCCGCATTGG+AGG 0.539094 tig0026114:-24233 None:intergenic
TACAGAAGAGTTGCATTGCC+CGG 0.539306 tig0026114:-24815 None:intergenic
GAATAGTAATTTGAGAGAGC+TGG 0.541808 tig0026114:-25704 None:intergenic
ATATATCACTGCACCAGGGT+TGG 0.542561 tig0026114:-25790 None:intergenic
GGTAATGGGATTAACGGCGT+TGG 0.544791 tig0026114:+23755 Msa1427020:CDS
AGGCCACTCACTATGCGTAT+TGG 0.545910 tig0026114:+24068 Msa1427020:CDS
ACATCAATAAGCTCTCCTAA+AGG 0.553954 tig0026114:-23897 None:intergenic
GCGTATGGTCCTGAACCTGC+AGG 0.559980 tig0026114:+24361 Msa1427020:CDS
CTCACTATGCGTATTGGTGT+TGG 0.565060 tig0026114:+24074 Msa1427020:CDS
TATTGGGATTGTAGCAGCAT+GGG 0.571835 tig0026114:+23734 Msa1427020:CDS
TGAGTGTGGATCGACTTGTT+AGG 0.572466 tig0026114:+25662 Msa1427020:three_prime_UTR
TCAATGAAGTCAAAATTGAT+CGG 0.581630 tig0026114:+24877 Msa1427020:exon
GCCACATGGTGTAGAAAGGA+TGG 0.591372 tig0026114:+23475 None:intergenic
AATTGAATACTATGCTACTG+TGG 0.592481 tig0026114:+23794 Msa1427020:CDS
GTAATTAGGGGATTGGATCA+GGG 0.593610 tig0026114:+24188 Msa1427020:CDS
ACTATCAAATACTATTCCAT+CGG 0.594477 tig0026114:-24030 None:intergenic
ATTGAATACTATGCTACTGT+GGG 0.611936 tig0026114:+23795 Msa1427020:CDS
ATCCTCTTTACTCTTAAAAG+GGG 0.619462 tig0026114:-25767 None:intergenic
CCAATACCAATTCCAACTAA+CGG 0.620051 tig0026114:-23717 None:intergenic
ATACGCATATGAACCGCACA+TGG 0.620763 tig0026114:+24906 Msa1427020:three_prime_UTR
TGAGAGAGCTGGAACCAGGA+AGG 0.621370 tig0026114:-25693 None:intergenic
TATGCGTATTGGTGTTGGCA+AGG 0.622438 tig0026114:+24079 Msa1427020:CDS
GTATTGGGATTGTAGCAGCA+TGG 0.623097 tig0026114:+23733 Msa1427020:CDS
TGTGAATTTCAGGTAATTAG+GGG 0.623369 tig0026114:+24176 Msa1427020:intron
ACATAATTAAGCTCACACAT+TGG 0.625130 tig0026114:-23822 None:intergenic
GGCGTACCTCCAATGCGGAT+AGG 0.639198 tig0026114:+24227 Msa1427020:CDS
AGAAGGAAAACGGTTATGAA+CGG 0.643601 tig0026114:-23616 None:intergenic
GTGTTATGCTCAGCACGTAA+CGG 0.647081 tig0026114:+23681 Msa1427020:CDS
ATAGGTGACTGCAATATACC+GGG 0.650180 tig0026114:+24797 Msa1427020:intron
TCAGGACCATACGCTAACAA+TGG 0.656714 tig0026114:-24352 None:intergenic
GGACCATACGCTAACAATGG+AGG 0.666829 tig0026114:-24349 None:intergenic
GAGTAAAGAGGATCCAACCC+TGG 0.668199 tig0026114:+25777 Msa1427020:three_prime_UTR
ACACCAATACGCATAGTGAG+TGG 0.668322 tig0026114:-24071 None:intergenic
TATACTGCTAGATTCGCCGA+TGG 0.684653 tig0026114:+24014 Msa1427020:CDS
AAACTCACCCAATCCATGTG+CGG 0.699883 tig0026114:-24919 None:intergenic
GTGAAGGCGTACCTCCAATG+CGG 0.724987 tig0026114:+24222 Msa1427020:CDS
TAATATATATCACTGCACCA+GGG 0.746565 tig0026114:-25794 None:intergenic
TCATTGCAGACAGCACACAG+AGG 0.765224 tig0026114:-25975 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTACTATTTTTACTT+AGG + tig0026114:24304-24323 Msa1427020:intron 10.0%
!!! TTATAAACTAATTTTTTCTA+TGG + tig0026114:25483-25502 Msa1427020:intron 10.0%
!!! TTTTTAATAATTTTTTTGAC+TGG + tig0026114:25594-25613 Msa1427020:intron 10.0%
!! AGCTTAATTATGTTAAATCT+GGG + tig0026114:23832-23851 Msa1427020:CDS 20.0%
!!! ATTTACTATTTTTACTTAGG+TGG + tig0026114:24307-24326 Msa1427020:intron 20.0%
!!! TTTACTATTTTTACTTAGGT+GGG + tig0026114:24308-24327 Msa1427020:intron 20.0%
!! AATCAAATTAATCGTGTATT+TGG + tig0026114:24460-24479 Msa1427020:intron 20.0%
!! ATTATTATCAGAAGAAGAAA+AGG + tig0026114:24728-24747 Msa1427020:intron 20.0%
!! CTGTATGATATTAAATTTGT+TGG + tig0026114:24833-24852 Msa1427020:CDS 20.0%
!!! TAAATTTGTTGGTCTTTATT+CGG + tig0026114:24844-24863 Msa1427020:CDS 20.0%
!!! AATTGTTTAGAGTAATGAAA+TGG + tig0026114:25625-25644 Msa1427020:intron 20.0%
!! GATTAAAGATACAAGTAATA+GGG - tig0026114:25941-25960 None:intergenic 20.0%
!! AGTTAAAATGTACAATTTCT+TGG + tig0026114:26043-26062 Msa1427020:three_prime_UTR 20.0%
! ATTTCATACAAGAAGGAAAA+CGG - tig0026114:23629-23648 None:intergenic 25.0%
!! AAGCTATAAAGTATCCAATA+AGG + tig0026114:23659-23678 Msa1427020:CDS 25.0%
! GAGCTTAATTATGTTAAATC+TGG + tig0026114:23831-23850 Msa1427020:CDS 25.0%
! ACTATCAAATACTATTCCAT+CGG - tig0026114:24033-24052 None:intergenic 25.0%
!!! TTTCTTGTTTTTGTTGAGTT+TGG + tig0026114:24138-24157 Msa1427020:intron 25.0%
!! AATGTGAATTTCAGGTAATT+AGG + tig0026114:24174-24193 Msa1427020:intron 25.0%
!! ATGTGAATTTCAGGTAATTA+GGG + tig0026114:24175-24194 Msa1427020:intron 25.0%
! TACATTGGTAGAAAATATAC+CGG - tig0026114:24510-24529 None:intergenic 25.0%
!! AAAAGACCATGGATTTTATT+AGG + tig0026114:24680-24699 Msa1427020:intron 25.0%
!!! AGTTTTGTCATTGATTCAAT+AGG + tig0026114:24779-24798 Msa1427020:intron 25.0%
!!! AAATTTGTTGGTCTTTATTC+GGG + tig0026114:24845-24864 Msa1427020:CDS 25.0%
! TCAATGAAGTCAAAATTGAT+CGG + tig0026114:24877-24896 Msa1427020:exon 25.0%
! CAAAATATTCTCAAAAGATC+AGG - tig0026114:24945-24964 None:intergenic 25.0%
!!! CTACTTAAAATTTTGACACA+GGG + tig0026114:25220-25239 Msa1427020:intron 25.0%
!!! GCATATCATTGTAGTTTTAA+AGG - tig0026114:25521-25540 None:intergenic 25.0%
! TTAAAACTACAATGATATGC+TGG + tig0026114:25521-25540 Msa1427020:intron 25.0%
! GGTCTTGATTATCTAAAAAT+AGG + tig0026114:25560-25579 Msa1427020:intron 25.0%
! TGATATATATTAGACAAGTC+TGG + tig0026114:25805-25824 Msa1427020:three_prime_UTR 25.0%
! GGATTAAAGATACAAGTAAT+AGG - tig0026114:25942-25961 None:intergenic 25.0%
ATGATATGAGTAACTCCATT+TGG - tig0026114:23505-23524 None:intergenic 30.0%
GTGTGTATATAGTTCTCTTA+AGG - tig0026114:23543-23562 None:intergenic 30.0%
CCATTCAATTTCATACAAGA+AGG - tig0026114:23636-23655 None:intergenic 30.0%
CCTTCTTGTATGAAATTGAA+TGG + tig0026114:23633-23652 Msa1427020:CDS 30.0%
AATTGAATACTATGCTACTG+TGG + tig0026114:23794-23813 Msa1427020:CDS 30.0%
ATTGAATACTATGCTACTGT+GGG + tig0026114:23795-23814 Msa1427020:CDS 30.0%
ACATAATTAAGCTCACACAT+TGG - tig0026114:23825-23844 None:intergenic 30.0%
AATTATGTTAAATCTGGGCT+TGG + tig0026114:23837-23856 Msa1427020:CDS 30.0%
ATAGTAGTTATAAACGTGCT+AGG + tig0026114:24048-24067 Msa1427020:CDS 30.0%
TTGTTGAGTTTGGACTTATA+AGG + tig0026114:24148-24167 Msa1427020:intron 30.0%
TGTTGAGTTTGGACTTATAA+GGG + tig0026114:24149-24168 Msa1427020:intron 30.0%
! TGTGAATTTCAGGTAATTAG+GGG + tig0026114:24176-24195 Msa1427020:intron 30.0%
AATTTAATACCTATCCGCAT+TGG - tig0026114:24239-24258 None:intergenic 30.0%
CTAACATATTTGATGCAGAT+AGG + tig0026114:24263-24282 Msa1427020:intron 30.0%
ACATTGGTAGAAAATATACC+GGG - tig0026114:24509-24528 None:intergenic 30.0%
!!! TGTAGCTGCTTTTTTTACAT+TGG - tig0026114:24525-24544 None:intergenic 30.0%
! GTCTTTTCAATTGTAGATTG+CGG - tig0026114:24667-24686 None:intergenic 30.0%
ATCTACAATTGAAAAGACCA+TGG + tig0026114:24669-24688 Msa1427020:intron 30.0%
TTACATGACATGGTCAATAT+TGG - tig0026114:25094-25113 None:intergenic 30.0%
! CATACTGTGTTTTATCATGA+AGG - tig0026114:25154-25173 None:intergenic 30.0%
!! GCTACTTAAAATTTTGACAC+AGG + tig0026114:25219-25238 Msa1427020:intron 30.0%
CACAAGAAAAATGTTCACAA+AGG - tig0026114:25247-25266 None:intergenic 30.0%
! AACATTTTTCTTGTGCATCA+TGG + tig0026114:25252-25271 Msa1427020:intron 30.0%
CATTCATCTTAAATACCACT+CGG - tig0026114:25385-25404 None:intergenic 30.0%
! GAGTGGTATTTAAGATGAAT+GGG + tig0026114:25384-25403 Msa1427020:intron 30.0%
! AGTGGTATTTAAGATGAATG+GGG + tig0026114:25385-25404 Msa1427020:intron 30.0%
!!! ATGAAATGGACTTTTTTTGC+TGG + tig0026114:25639-25658 Msa1427020:three_prime_UTR 30.0%
!! TTAAAAGGGGTATTCTATTC+AGG - tig0026114:25757-25776 None:intergenic 30.0%
ATCCTCTTTACTCTTAAAAG+GGG - tig0026114:25770-25789 None:intergenic 30.0%
GATCCTCTTTACTCTTAAAA+GGG - tig0026114:25771-25790 None:intergenic 30.0%
TAATATATATCACTGCACCA+GGG - tig0026114:25797-25816 None:intergenic 30.0%
CCAAAATCATGATTCATCTT+TGG - tig0026114:26005-26024 None:intergenic 30.0%
! CCAAAGATGAATCATGATTT+TGG + tig0026114:26002-26021 Msa1427020:three_prime_UTR 30.0%
! AGATGAATCATGATTTTGGA+TGG + tig0026114:26006-26025 Msa1427020:three_prime_UTR 30.0%
ACACACCCTAAGATAGAAAA+TGG + tig0026114:23563-23582 Msa1427020:exon 35.0%
!!! GAGTGCCATTTTCTATCTTA+GGG - tig0026114:23571-23590 None:intergenic 35.0%
!!! AGAGTGCCATTTTCTATCTT+AGG - tig0026114:23572-23591 None:intergenic 35.0%
AGAAGGAAAACGGTTATGAA+CGG - tig0026114:23619-23638 None:intergenic 35.0%
CCAATACCAATTCCAACTAA+CGG - tig0026114:23720-23739 None:intergenic 35.0%
CGTTAGTTGGAATTGGTATT+GGG + tig0026114:23718-23737 Msa1427020:CDS 35.0%
TGGTTATTGCGATTATGTTG+AGG + tig0026114:23857-23876 Msa1427020:CDS 35.0%
GGTTATTGCGATTATGTTGA+GGG + tig0026114:23858-23877 Msa1427020:CDS 35.0%
ACATCAATAAGCTCTCCTAA+AGG - tig0026114:23900-23919 None:intergenic 35.0%
TAAGGGTGAATGTGAATTTC+AGG + tig0026114:24166-24185 Msa1427020:intron 35.0%
! ATTTCAGGTAATTAGGGGAT+TGG + tig0026114:24181-24200 Msa1427020:intron 35.0%
!! GTGTGATTTGCTACTAAACA+TGG + tig0026114:24426-24445 Msa1427020:intron 35.0%
ATTGGTAGAAAATATACCGG+GGG - tig0026114:24507-24526 None:intergenic 35.0%
CATTGGTAGAAAATATACCG+GGG - tig0026114:24508-24527 None:intergenic 35.0%
! ACCATGGATTTTATTAGGCT+GGG + tig0026114:24685-24704 Msa1427020:intron 35.0%
AATAGGTGACTGCAATATAC+CGG + tig0026114:24796-24815 Msa1427020:intron 35.0%
GATAAAACAATCTGAGTGCT+AGG - tig0026114:24994-25013 None:intergenic 35.0%
ATTGACCATGTCATGTAATC+AGG + tig0026114:25096-25115 Msa1427020:intron 35.0%
! CGAGTGGTATTTAAGATGAA+TGG + tig0026114:25383-25402 Msa1427020:intron 35.0%
GAATAGTAATTTGAGAGAGC+TGG - tig0026114:25707-25726 None:intergenic 35.0%
!! TACCCCTTTTAAGAGTAAAG+AGG + tig0026114:25765-25784 Msa1427020:three_prime_UTR 35.0%
GGATCCTCTTTACTCTTAAA+AGG - tig0026114:25772-25791 None:intergenic 35.0%
CTAATATATATCACTGCACC+AGG - tig0026114:25798-25817 None:intergenic 35.0%
TGCTGAGCATAACACCTTAT+TGG - tig0026114:23676-23695 None:intergenic 40.0%
AACGAAAAGAAGCCGTTAGT+TGG + tig0026114:23705-23724 Msa1427020:CDS 40.0%
AAGAAGCCGTTAGTTGGAAT+TGG + tig0026114:23711-23730 Msa1427020:CDS 40.0%
CCGTTAGTTGGAATTGGTAT+TGG + tig0026114:23717-23736 Msa1427020:CDS 40.0%
TATTGGGATTGTAGCAGCAT+GGG + tig0026114:23734-23753 Msa1427020:CDS 40.0%
ATTGTAGCAGCATGGGTAAT+GGG + tig0026114:23741-23760 Msa1427020:CDS 40.0%
!! AGCATGGGTAATGGGATTAA+CGG + tig0026114:23749-23768 Msa1427020:CDS 40.0%
! TGCGATTATGTTGAGGGTTT+TGG + tig0026114:23864-23883 Msa1427020:CDS 40.0%
!! TTTGGTGATGAAGCTCCTTT+AGG + tig0026114:23882-23901 Msa1427020:CDS 40.0%
GTAATTAGGGGATTGGATCA+GGG + tig0026114:24188-24207 Msa1427020:CDS 40.0%
! GGATTGGATCAGGGAATTTT+GGG + tig0026114:24197-24216 Msa1427020:CDS 40.0%
! GATTGGATCAGGGAATTTTG+GGG + tig0026114:24198-24217 Msa1427020:CDS 40.0%
! ATTGGATCAGGGAATTTTGG+GGG + tig0026114:24199-24218 Msa1427020:CDS 40.0%
TTAATACCTATCCGCATTGG+AGG - tig0026114:24236-24255 None:intergenic 40.0%
ATTCCTCCATTGTTAGCGTA+TGG + tig0026114:24346-24365 Msa1427020:CDS 40.0%
TTGGTAGAAAATATACCGGG+GGG - tig0026114:24506-24525 None:intergenic 40.0%
AAAAAGCAGCTACAGTGCTA+TGG + tig0026114:24531-24550 Msa1427020:intron 40.0%
! GACCATGGATTTTATTAGGC+TGG + tig0026114:24684-24703 Msa1427020:intron 40.0%
TCCCAGCCTAATAAAATCCA+TGG - tig0026114:24689-24708 None:intergenic 40.0%
ATAGGTGACTGCAATATACC+GGG + tig0026114:24797-24816 Msa1427020:intron 40.0%
ATATGAACCGCACATGGATT+GGG + tig0026114:24912-24931 Msa1427020:three_prime_UTR 40.0%
AGAGCAAACAGAAAGTAAGC+TGG - tig0026114:25016-25035 None:intergenic 40.0%
AGCTTCCTGATTACATGACA+TGG - tig0026114:25104-25123 None:intergenic 40.0%
TTTGCTGACACACATGATCA+TGG + tig0026114:25185-25204 Msa1427020:intron 40.0%
CATCATTAACCTTATCCCAG+TGG + tig0026114:25316-25335 Msa1427020:intron 40.0%
AATCAAGACCAGAGAATGCA+TGG - tig0026114:25550-25569 None:intergenic 40.0%
!!! ACTTTTTTTGCTGGTGAGTG+TGG + tig0026114:25648-25667 Msa1427020:three_prime_UTR 40.0%
CTATTCCTGTTTAGTGCAGT+CGG + tig0026114:25721-25740 Msa1427020:three_prime_UTR 40.0%
CACAGAGGAAGAAGATCAAA+AGG - tig0026114:25963-25982 None:intergenic 40.0%
CTCTCATTCTCACTCTGTTC+AGG + tig0026114:23588-23607 Msa1427020:CDS 45.0%
GTGTTATGCTCAGCACGTAA+CGG + tig0026114:23681-23700 Msa1427020:CDS 45.0%
GTATTGGGATTGTAGCAGCA+TGG + tig0026114:23733-23752 Msa1427020:CDS 45.0%
GATTGTAGCAGCATGGGTAA+TGG + tig0026114:23740-23759 Msa1427020:CDS 45.0%
TATACTGCTAGATTCGCCGA+TGG + tig0026114:24014-24033 Msa1427020:CDS 45.0%
ACACCAATACGCATAGTGAG+TGG - tig0026114:24074-24093 None:intergenic 45.0%
! CTCACTATGCGTATTGGTGT+TGG + tig0026114:24074-24093 Msa1427020:CDS 45.0%
!! TATGCGTATTGGTGTTGGCA+AGG + tig0026114:24079-24098 Msa1427020:CDS 45.0%
GGTAATTAGGGGATTGGATC+AGG + tig0026114:24187-24206 Msa1427020:intron 45.0%
! GGGATTGGATCAGGGAATTT+TGG + tig0026114:24196-24215 Msa1427020:CDS 45.0%
! TTGGATCAGGGAATTTTGGG+GGG + tig0026114:24200-24219 Msa1427020:CDS 45.0%
TCAGGACCATACGCTAACAA+TGG - tig0026114:24355-24374 None:intergenic 45.0%
TACAGAAGAGTTGCATTGCC+CGG - tig0026114:24818-24837 None:intergenic 45.0%
ATACGCATATGAACCGCACA+TGG + tig0026114:24906-24925 Msa1427020:three_prime_UTR 45.0%
CATATGAACCGCACATGGAT+TGG + tig0026114:24911-24930 Msa1427020:three_prime_UTR 45.0%
AAACTCACCCAATCCATGTG+CGG - tig0026114:24922-24941 None:intergenic 45.0%
TTAACCTTATCCCAGTGGCT+TGG + tig0026114:25321-25340 Msa1427020:intron 45.0%
TATACTGTTTGACGACCGAG+TGG + tig0026114:25367-25386 Msa1427020:intron 45.0%
!! TGAGTGTGGATCGACTTGTT+AGG + tig0026114:25662-25681 Msa1427020:three_prime_UTR 45.0%
AATTTGAGAGAGCTGGAACC+AGG - tig0026114:25700-25719 None:intergenic 45.0%
ATATATCACTGCACCAGGGT+TGG - tig0026114:25793-25812 None:intergenic 45.0%
!! GGTAATGGGATTAACGGCGT+TGG + tig0026114:23755-23774 Msa1427020:CDS 50.0%
AGGCCACTCACTATGCGTAT+TGG + tig0026114:24068-24087 Msa1427020:CDS 50.0%
GGACCATACGCTAACAATGG+AGG - tig0026114:24352-24371 None:intergenic 50.0%
TAAGCCAAGCCACTGGGATA+AGG - tig0026114:25328-25347 None:intergenic 50.0%
GACGAATAAGCCAAGCCACT+GGG - tig0026114:25334-25353 None:intergenic 50.0%
TGACGAATAAGCCAAGCCAC+TGG - tig0026114:25335-25354 None:intergenic 50.0%
GCTGGTATCCATGCATTCTC+TGG + tig0026114:25539-25558 Msa1427020:intron 50.0%
GTTAGGCAGATTCTCCTTCC+TGG + tig0026114:25679-25698 Msa1427020:three_prime_UTR 50.0%
CATGTCCGACTGCACTAAAC+AGG - tig0026114:25729-25748 None:intergenic 50.0%
GAGTAAAGAGGATCCAACCC+TGG + tig0026114:25777-25796 Msa1427020:three_prime_UTR 50.0%
TCATTGCAGACAGCACACAG+AGG - tig0026114:25978-25997 None:intergenic 50.0%
! GGGATTAACGGCGTTGGATG+CGG + tig0026114:23761-23780 Msa1427020:CDS 55.0%
!! CAGGGAATTTTGGGGGGTGA+AGG + tig0026114:24206-24225 Msa1427020:CDS 55.0%
! GTGAAGGCGTACCTCCAATG+CGG + tig0026114:24222-24241 Msa1427020:CDS 55.0%
AAACCTGAGAAGCAGCCTGC+AGG - tig0026114:24379-24398 None:intergenic 55.0%
TGAGAGAGCTGGAACCAGGA+AGG - tig0026114:25696-25715 None:intergenic 55.0%
GGCGTACCTCCAATGCGGAT+AGG + tig0026114:24227-24246 Msa1427020:CDS 60.0%
GCGTATGGTCCTGAACCTGC+AGG + tig0026114:24361-24380 Msa1427020:CDS 60.0%
GAGAAGCAGCCTGCAGGTTC+AGG - tig0026114:24373-24392 None:intergenic 60.0%
GAACCTGCAGGCTGCTTCTC+AGG + tig0026114:24373-24392 Msa1427020:CDS 60.0%
TCCATTGCGCGTACGCCCCC+CGG + tig0026114:24488-24507 Msa1427020:intron 70.0%
! ACCGGGGGGCGTACGCGCAA+TGG - tig0026114:24492-24511 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0026114 gene 23490 26066 23490 ID=Msa1427020;Name=Msa1427020
tig0026114 mRNA 23490 26066 23490 ID=Msa1427020-mRNA-1;Parent=Msa1427020;Name=Msa1427020-mRNA-1;_AED=0.07;_eAED=0.07;_QI=92|1|1|1|0.8|0.66|6|482|213
tig0026114 exon 23490 23917 23490 ID=Msa1427020-mRNA-1:exon:5223;Parent=Msa1427020-mRNA-1
tig0026114 exon 24008 24100 24008 ID=Msa1427020-mRNA-1:exon:5224;Parent=Msa1427020-mRNA-1
tig0026114 exon 24188 24248 24188 ID=Msa1427020-mRNA-1:exon:5225;Parent=Msa1427020-mRNA-1
tig0026114 exon 24326 24394 24326 ID=Msa1427020-mRNA-1:exon:5226;Parent=Msa1427020-mRNA-1
tig0026114 exon 24801 24933 24801 ID=Msa1427020-mRNA-1:exon:5227;Parent=Msa1427020-mRNA-1
tig0026114 exon 25635 26066 25635 ID=Msa1427020-mRNA-1:exon:5228;Parent=Msa1427020-mRNA-1
tig0026114 five_prime_UTR 23490 23581 23490 ID=Msa1427020-mRNA-1:five_prime_utr;Parent=Msa1427020-mRNA-1
tig0026114 CDS 23582 23917 23582 ID=Msa1427020-mRNA-1:cds;Parent=Msa1427020-mRNA-1
tig0026114 CDS 24008 24100 24008 ID=Msa1427020-mRNA-1:cds;Parent=Msa1427020-mRNA-1
tig0026114 CDS 24188 24248 24188 ID=Msa1427020-mRNA-1:cds;Parent=Msa1427020-mRNA-1
tig0026114 CDS 24326 24394 24326 ID=Msa1427020-mRNA-1:cds;Parent=Msa1427020-mRNA-1
tig0026114 CDS 24801 24883 24801 ID=Msa1427020-mRNA-1:cds;Parent=Msa1427020-mRNA-1
tig0026114 three_prime_UTR 24884 24933 24884 ID=Msa1427020-mRNA-1:three_prime_utr;Parent=Msa1427020-mRNA-1
tig0026114 three_prime_UTR 25635 26066 25635 ID=Msa1427020-mRNA-1:three_prime_utr;Parent=Msa1427020-mRNA-1
Gene Sequence

>Msa1427020

ATGGCACTCTCATTCTCACTCTGTTCAGGCGCAACCGTTCATAACCGTTTTCCTTCTTGTATGAAATTGAATGGTAAAAGCTATAAAGTATCCAATAAGGTGTTATGCTCAGCACGTAACGGTAACGAAAAGAAGCCGTTAGTTGGAATTGGTATTGGGATTGTAGCAGCATGGGTAATGGGATTAACGGCGTTGGATGCGGATGCAACGAGAATTGAATACTATGCTACTGTGGGAGAGCCAATGTGTGAGCTTAATTATGTTAAATCTGGGCTTGGTTATTGCGATTATGTTGAGGGTTTTGGTGATGAAGCTCCTTTAGGAGAGCTTATTGATATTCACTATACTGCTAGATTCGCCGATGGAATAGTATTTGATAGTAGTTATAAACGTGCTAGGCCACTCACTATGCGTATTGGTGTTGGCAAGGTAATTAGGGGATTGGATCAGGGAATTTTGGGGGGTGAAGGCGTACCTCCAATGCGGATAGGTGGGAAACGCAAACTTATGATTCCTCCATTGTTAGCGTATGGTCCTGAACCTGCAGGCTGCTTCTCAGGTGACTGCAATATACCGGGCAATGCAACTCTTCTGTATGATATTAAATTTGTTGGTCTTTATTCGGGCAATCGAAGTCAATGA

Protein sequence

>Msa1427020

MALSFSLCSGATVHNRFPSCMKLNGKSYKVSNKVLCSARNGNEKKPLVGIGIGIVAAWVMGLTALDADATRIEYYATVGEPMCELNYVKSGLGYCDYVEGFGDEAPLGELIDIHYTARFADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMRIGGKRKLMIPPLLAYGPEPAGCFSGDCNIPGNATLLYDIKFVGLYSGNRSQ*