AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0126760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126760 MtrunA17_Chr1g0189981 88.959 317 12 3 211 510 1 311 0.0 550
Msa0126760 MtrunA17_Chr1g0189991 98.958 192 2 0 1 192 1 192 5.86e-139 398
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126760 AT5G37360.1 55.944 286 101 4 243 509 29 308 1.17e-94 290
Msa0126760 AT5G38890.1 73.118 186 48 1 7 192 5 188 2.89e-94 285

Find 144 sgRNAs with CRISPR-Local

Find 530 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAAATGAAACTTTGATTT+TGG 0.158497 1_3:+55856152 None:intergenic
AGAATCTTCCTTCGCGTTAA+TGG 0.171524 1_3:-55856116 Msa0126760:exon
TTTGCCTAATTAGGAAAATT+AGG 0.187671 1_3:-55847917 Msa0126760:three_prime_UTR
TATTCTATGTTTGCCTAATT+AGG 0.194396 1_3:-55847926 Msa0126760:three_prime_UTR
TGCATCTCAGTCCAACTTAT+TGG 0.214671 1_3:+55853005 None:intergenic
TGGGAAAGAGTGGGTGTTAA+AGG 0.234862 1_3:+55851462 None:intergenic
CTGGATCTGTTGTTATTGTT+AGG 0.248029 1_3:-55855771 Msa0126760:CDS
AATTGGTAGAAGTGGTAGTA+TGG 0.262977 1_3:+55851394 None:intergenic
GGGTCAGGTTCTGTAGAATT+AGG 0.271583 1_3:+55851309 None:intergenic
TTGTTGTCCGCACTTACTTC+AGG 0.277570 1_3:-55848383 Msa0126760:CDS
ACAGTCTACGCTTCCTTAAC+TGG 0.282199 1_3:-55855998 Msa0126760:CDS
GGGTGTTAAAGGGCAGAATT+TGG 0.287155 1_3:+55851473 None:intergenic
GGATTTACATTTACCTGATT+TGG 0.287385 1_3:+55850146 None:intergenic
ACACCCACTAAAGCAAATAT+TGG 0.292433 1_3:-55848738 Msa0126760:CDS
TACCAAACTCATGACATAAT+TGG 0.293175 1_3:-55848218 Msa0126760:three_prime_UTR
GTTTGGTATCTGCTGGAAAA+AGG 0.300905 1_3:-55850040 Msa0126760:CDS
TGCTGTGTATGTTCCTCTTC+CGG 0.308951 1_3:+55856033 None:intergenic
AGAATATGATAATACAATAA+AGG 0.313829 1_3:+55847943 None:intergenic
ATGAGTTTGGTACTTCATTA+TGG 0.335297 1_3:+55848229 None:intergenic
TTCTGTAGAATTAGGCGAAT+TGG 0.337375 1_3:+55851317 None:intergenic
TCTTAGTGCGGTAAAGAGTT+AGG 0.339167 1_3:-55850276 Msa0126760:intron
GGAGTTGGGTTGTTTATTAT+CGG 0.347093 1_3:-55847980 Msa0126760:three_prime_UTR
CACCCACTAAAGCAAATATT+GGG 0.366047 1_3:-55848737 Msa0126760:CDS
TGAAAGAAACTCGACAAATC+TGG 0.366054 1_3:+55848145 None:intergenic
TGACCAGTTACTTCAATAAT+CGG 0.366247 1_3:+55855820 None:intergenic
GGAAACTTTCCAAAGTAATC+AGG 0.370840 1_3:+55851161 None:intergenic
AAATGAGCTTGGTGTTGTTT+CGG 0.377395 1_3:-55854321 Msa0126760:CDS
AGTGGCGAAACTTCCTTTGA+TGG 0.382021 1_3:-55850190 Msa0126760:CDS
TTGACAGGCACTGCCAAATC+AGG 0.386274 1_3:-55850159 Msa0126760:intron
GGCCCCAATATTTGCTTTAG+TGG 0.386383 1_3:+55848734 None:intergenic
CTTAGCACTTGGAAGGCGTT+TGG 0.387050 1_3:-55850057 Msa0126760:intron
AGAATTTAGTAGTCACAGTT+AGG 0.397290 1_3:-55847833 Msa0126760:three_prime_UTR
CATGGACCTGTTCCTGAACC+TGG 0.399097 1_3:-55855790 Msa0126760:CDS
TGTTGTCCGCACTTACTTCA+GGG 0.403335 1_3:-55848382 Msa0126760:CDS
AATGGCTTACAGCAATTTGT+TGG 0.409856 1_3:+55851274 None:intergenic
TGCCAATTATGTCATGAGTT+TGG 0.409945 1_3:+55848216 None:intergenic
TTGGCAGGCAGCAAGACGTT+AGG 0.411284 1_3:-55854572 Msa0126760:intron
AGACCGATTATTGAAGTAAC+TGG 0.412607 1_3:-55855823 Msa0126760:CDS
GTGACACCAGGAGAAGTAAT+AGG 0.412723 1_3:-55856076 Msa0126760:CDS
GATCTTCCTCCTGATTACTT+TGG 0.416024 1_3:-55851170 Msa0126760:CDS
GAATATGATAATACAATAAA+GGG 0.417163 1_3:+55847944 None:intergenic
TGGATCTGTTGTTATTGTTA+GGG 0.418325 1_3:-55855770 Msa0126760:CDS
CAACTTTGGTTCCAATAAGT+TGG 0.425712 1_3:-55853016 Msa0126760:CDS
AGCTATTGCCGAACCTGGTC+AGG 0.427068 1_3:+55855941 None:intergenic
TGTTCAATTTGACCGGATAG+TGG 0.430446 1_3:+55852978 None:intergenic
GGTTGGAATGAAGACAATAA+TGG 0.431835 1_3:-55851529 Msa0126760:CDS
TTATTTGGCTGCAGTCTTTG+AGG 0.433540 1_3:-55848439 Msa0126760:intron
GGAATGATTGGGTGTGATGT+TGG 0.436521 1_3:+55851442 None:intergenic
TTTCAGTCAATGGGACAGTA+TGG 0.443249 1_3:-55850017 Msa0126760:CDS
CTTTCTTTGTTCAATTTGAC+CGG 0.447139 1_3:+55852971 None:intergenic
TTATGTCTGCTTCGTTTGCT+CGG 0.449141 1_3:-55848311 Msa0126760:three_prime_UTR
GGGAAAGAGTGGGTGTTAAA+GGG 0.449250 1_3:+55851463 None:intergenic
TATTTGGCTGCAGTCTTTGA+GGG 0.457087 1_3:-55848438 Msa0126760:intron
ACAGATCCAGGTTCAGGAAC+AGG 0.461967 1_3:+55855784 None:intergenic
GTTGGAGAAATGAGAGGATT+GGG 0.462020 1_3:+55847858 None:intergenic
TTGATGGAGGCTTATTTGAC+AGG 0.466749 1_3:-55850174 Msa0126760:CDS
GCCCCAATATTTGCTTTAGT+GGG 0.468160 1_3:+55848735 None:intergenic
TCTGTATTTAGGTGCAACTT+TGG 0.468788 1_3:-55853030 Msa0126760:intron
GGAAGGCGTTTGGTATCTGC+TGG 0.470525 1_3:-55850047 Msa0126760:CDS
TTAGGAAATCAGTTAGAAGT+TGG 0.473619 1_3:-55847815 Msa0126760:three_prime_UTR
TACTCTTATGTAAATCAGAA+TGG 0.473826 1_3:-55847760 None:intergenic
CTCTTCCGGCTTTAACGTCG+TGG 0.473990 1_3:+55856047 None:intergenic
ATAACAACAGATCCAGGTTC+AGG 0.475432 1_3:+55855778 None:intergenic
AGTTGGAGAAATGAGAGGAT+TGG 0.477195 1_3:+55847857 None:intergenic
GCAAAAGCAATGATTGAGGC+TGG 0.478086 1_3:-55848952 Msa0126760:CDS
ACTGCAGTTTGGAGCACTGC+AGG 0.479464 1_3:-55848769 Msa0126760:intron
GAATGATTGGGTGTGATGTT+GGG 0.480853 1_3:+55851443 None:intergenic
CAGTCTCCCATGCTCGAGAT+AGG 0.481427 1_3:+55850238 None:intergenic
TGGCAGGCAGCAAGACGTTA+GGG 0.487010 1_3:-55854571 Msa0126760:intron
GAAGGAAAACAATGAAGAGA+AGG 0.489542 1_3:+55851501 None:intergenic
CGGTCAAATTGAACAAAGAA+AGG 0.493526 1_3:-55852970 Msa0126760:CDS
TTTAACATTAGAATATTGGC+AGG 0.497436 1_3:+55848117 None:intergenic
ACGTCCAATCGAAGATCGTT+GGG 0.498777 1_3:+55851140 None:intergenic
TCACACCATACCTCCTGCTT+CGG 0.498985 1_3:-55855969 Msa0126760:CDS
GGTATTGAAATTGGTAGAAG+TGG 0.502446 1_3:+55851386 None:intergenic
TGCTTCGGATTCTCCTGACC+AGG 0.505236 1_3:-55855954 Msa0126760:intron
GGCTTACAGCAATTTGTTGG+AGG 0.505720 1_3:+55851277 None:intergenic
GAGATGCAGTGTCCACTATC+CGG 0.509834 1_3:-55852990 Msa0126760:CDS
ATTGGTAGAAGTGGTAGTAT+GGG 0.512771 1_3:+55851395 None:intergenic
GTCAAATAAGCCTCCATCAA+AGG 0.515395 1_3:+55850177 None:intergenic
CACGACGTTAAAGCCGGAAG+AGG 0.515817 1_3:-55856046 Msa0126760:CDS
GTTTCCCAACGATCTTCGAT+TGG 0.518123 1_3:-55851144 Msa0126760:CDS
GGGCAGAATTTGGAGAGAGA+AGG 0.518976 1_3:+55851483 None:intergenic
AAGTTGTGGAAGGGAATGAT+TGG 0.519012 1_3:+55851430 None:intergenic
TACGTCCAATCGAAGATCGT+TGG 0.521998 1_3:+55851139 None:intergenic
GTGACTACTAAATTCTGAGT+TGG 0.523949 1_3:+55847840 None:intergenic
TTGAAATAGGATTCTTACAT+GGG 0.526346 1_3:-55848619 Msa0126760:intron
TTTGAAATAGGATTCTTACA+TGG 0.528276 1_3:-55848620 Msa0126760:intron
TTGTCCGCACTTACTTCAGG+GGG 0.530222 1_3:-55848380 Msa0126760:CDS
TGCTAAACCTATCTCGAGCA+TGG 0.530356 1_3:-55850245 Msa0126760:CDS
TCTTCCGGCTTTAACGTCGT+GGG 0.531766 1_3:+55856048 None:intergenic
GGTGTGATGTTGGGAAAGAG+TGG 0.537129 1_3:+55851452 None:intergenic
AGCTTTCCCTTGGAAATGCA+CGG 0.537145 1_3:-55854367 Msa0126760:CDS
TTTGCTTCTTAGCACTTGGA+AGG 0.539187 1_3:-55850064 Msa0126760:intron
CAGCTTCAATCAATCATGGT+TGG 0.542616 1_3:-55851546 Msa0126760:CDS
AGAGCAAAACGCAGAGAGGT+AGG 0.542860 1_3:+55851348 None:intergenic
GTAACTGGTCATAAAGCTCA+TGG 0.544279 1_3:-55855808 Msa0126760:CDS
TTGTTCATCTATTACTGAAG+AGG 0.545963 1_3:+55848906 None:intergenic
AGAATCCGAAGCAGGAGGTA+TGG 0.545963 1_3:+55855964 None:intergenic
AGTAAGCCCGTGCATTTCCA+AGG 0.547750 1_3:+55854360 None:intergenic
GCTTTCCCTTGGAAATGCAC+GGG 0.547902 1_3:-55854366 Msa0126760:CDS
TGGTCAGGAGAATCCGAAGC+AGG 0.548751 1_3:+55855956 None:intergenic
TACACAGCTTCAATCAATCA+TGG 0.556289 1_3:-55851550 Msa0126760:CDS
GAGCGAGACATGGTGACACC+AGG 0.556383 1_3:-55856088 Msa0126760:CDS
TGGCCAAGGTGAGACACAAA+AGG 0.559663 1_3:-55849997 Msa0126760:intron
GTTTCGGCAGAAAGCACTGC+TGG 0.563837 1_3:-55854305 Msa0126760:intron
CTAACAATAACAACAGATCC+AGG 0.564430 1_3:+55855772 None:intergenic
CAATGCTTTGATGCTTGCTA+AGG 0.565665 1_3:-55848541 Msa0126760:intron
ATCTGAGTGAAGTTGTGGAA+GGG 0.565749 1_3:+55851421 None:intergenic
CTCTGCTTCCATTAACGCGA+AGG 0.567288 1_3:+55856108 None:intergenic
GGTGTGACGGAAACCAGTTA+AGG 0.568362 1_3:+55855985 None:intergenic
GTGTGATGTTGGGAAAGAGT+GGG 0.572497 1_3:+55851453 None:intergenic
TGACATTGTTAAAGCTCTTG+TGG 0.576157 1_3:-55854502 Msa0126760:intron
AAAGCGGGAGGATGATGTAT+CGG 0.576481 1_3:+55850215 None:intergenic
GGGGAATCTGAGTGAAGTTG+TGG 0.576776 1_3:+55851416 None:intergenic
TGAACAAAGAAAGGTTGCAA+AGG 0.579432 1_3:-55852961 Msa0126760:intron
AAAACCCACGACGTTAAAGC+CGG 0.582369 1_3:-55856052 Msa0126760:CDS
GCTAAACCTATCTCGAGCAT+GGG 0.582386 1_3:-55850244 Msa0126760:CDS
TTGGTAGAAGTGGTAGTATG+GGG 0.583586 1_3:+55851396 None:intergenic
TTCTGAGTTGGAGAAATGAG+AGG 0.583991 1_3:+55847852 None:intergenic
GCATACTGCAAAGAACTCTC+CGG 0.584824 1_3:+55848570 None:intergenic
AAGCAGGAGGTATGGTGTGA+CGG 0.586359 1_3:+55855972 None:intergenic
GGCGAAACTTCCTTTGATGG+AGG 0.588589 1_3:-55850187 Msa0126760:CDS
CAAAAGCAATGATTGAGGCT+GGG 0.589048 1_3:-55848951 Msa0126760:CDS
GATCGCAAAAGCAATGATTG+AGG 0.597372 1_3:-55848956 Msa0126760:CDS
GTTGTCCGCACTTACTTCAG+GGG 0.600790 1_3:-55848381 Msa0126760:CDS
AATCTGAGTGAAGTTGTGGA+AGG 0.603518 1_3:+55851420 None:intergenic
AGTTGTGGAAGGGAATGATT+GGG 0.605314 1_3:+55851431 None:intergenic
TCAATGGGACAGTATGGCCA+AGG 0.617198 1_3:-55850011 Msa0126760:CDS
ATTTGGCTGCAGTCTTTGAG+GGG 0.618279 1_3:-55848437 Msa0126760:intron
CTTACATGGGAGATAGCTCA+AGG 0.624331 1_3:-55848606 Msa0126760:CDS
GAAGCTGATATTATGTGTGT+TGG 0.627252 1_3:-55855721 Msa0126760:CDS
AACTTTCCAAAGTAATCAGG+AGG 0.628896 1_3:+55851164 None:intergenic
AGTAAGTGCGGACAACAAAG+TGG 0.637792 1_3:+55848388 None:intergenic
TGGTAGAAGTGGTAGTATGG+GGG 0.638798 1_3:+55851397 None:intergenic
TCAAGGAATTCAAAACACTC+CGG 0.647748 1_3:-55848589 Msa0126760:CDS
AATGGAAGCAGAGCGAGACA+TGG 0.663008 1_3:-55856098 Msa0126760:CDS
GTAAGCCCGTGCATTTCCAA+GGG 0.668609 1_3:+55854361 None:intergenic
TCAGGAGAATCCGAAGCAGG+AGG 0.670307 1_3:+55855959 None:intergenic
TGTTAGAGCAAAACGCAGAG+AGG 0.676698 1_3:+55851344 None:intergenic
TGTCCGCACTTACTTCAGGG+GGG 0.688499 1_3:-55848379 Msa0126760:CDS
ACCCACTAAAGCAAATATTG+GGG 0.690448 1_3:-55848736 Msa0126760:CDS
AGAGCTTTAACAATGTCACC+AGG 0.699121 1_3:+55854507 None:intergenic
TGATTTACATAAGAGTACAG+TGG 0.704183 1_3:+55847766 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTAACTTTTTTTTTTTAA+TGG + chr1_3:55848501-55848520 None:intergenic 10.0%
!!! ATAAAAAATATTTTCACAAA+CGG + chr1_3:55850445-55850464 None:intergenic 10.0%
!!! ATAAAATGAAACTTTGATTT+TGG + chr1_3:55847783-55847802 None:intergenic 15.0%
!!! AGTATTCATTATTCTTATTT+TGG - chr1_3:55849341-55849360 Msa0126760:intron 15.0%
!!! TTCTATTTTAATTATAGCTT+TGG - chr1_3:55850096-55850115 Msa0126760:intron 15.0%
!!! TAAAAAATATTTTCACAAAC+GGG + chr1_3:55850444-55850463 None:intergenic 15.0%
!! AAGAAAATAGAAAATGTTAA+CGG - chr1_3:55850698-55850717 Msa0126760:intron 15.0%
!!! ACGTGTTTTTTTAATTATTA+AGG + chr1_3:55852254-55852273 None:intergenic 15.0%
!! AAGAAAAAAAAATGAAACAT+GGG + chr1_3:55852689-55852708 None:intergenic 15.0%
!! TTTCAAATTAAAAATGAAAG+TGG + chr1_3:55853115-55853134 None:intergenic 15.0%
!! ATTAAAATGAAATACAACAA+AGG + chr1_3:55854088-55854107 None:intergenic 15.0%
!!! TTAACTTTTTTTTTTCAGTA+AGG - chr1_3:55855255-55855274 Msa0126760:intron 15.0%
!!! TAGTTTTAACATTAGAATAT+TGG + chr1_3:55855822-55855841 None:intergenic 15.0%
!!! ATTCAGTTTTAAATTTCTTA+TGG - chr1_3:55855860-55855879 Msa0126760:intron 15.0%
!! GAATATGATAATACAATAAA+GGG + chr1_3:55855991-55856010 None:intergenic 15.0%
!! AGAATATGATAATACAATAA+AGG + chr1_3:55855992-55856011 None:intergenic 15.0%
!!! AAAAGTATTGTTCTTTACAT+AGG + chr1_3:55849030-55849049 None:intergenic 20.0%
!!! ATTATCATTTGTTGTTTTAG+AGG - chr1_3:55849123-55849142 Msa0126760:intron 20.0%
!!! TTATCATTTGTTGTTTTAGA+GGG - chr1_3:55849124-55849143 Msa0126760:intron 20.0%
!! TAGCAATTACATTGAAAAAA+AGG - chr1_3:55849151-55849170 Msa0126760:intron 20.0%
!! AGCAATTACATTGAAAAAAA+GGG - chr1_3:55849152-55849171 Msa0126760:intron 20.0%
!!! TAATAATTATTCCTGTTTTC+TGG - chr1_3:55849305-55849324 Msa0126760:intron 20.0%
!!! AATATTTTAAACCAGAAAAC+AGG + chr1_3:55849319-55849338 None:intergenic 20.0%
!! TACAAAATATTGTCAAATAG+TGG - chr1_3:55849880-55849899 Msa0126760:intron 20.0%
!!! GAACTAATGAAACTTTTTTT+TGG - chr1_3:55850584-55850603 Msa0126760:intron 20.0%
!! AGAAAATAGAAAATGTTAAC+GGG - chr1_3:55850699-55850718 Msa0126760:intron 20.0%
!!! TTTTACATACAAAATAGCAT+GGG - chr1_3:55851180-55851199 Msa0126760:CDS 20.0%
!!! TTTTTTTTTCCAACTTAGAA+TGG - chr1_3:55851300-55851319 Msa0126760:CDS 20.0%
!! TGAATTTCATGACAATTTAA+AGG - chr1_3:55851703-55851722 Msa0126760:intron 20.0%
!!! TGTTAAGGAACTTTTTATTT+AGG - chr1_3:55852079-55852098 Msa0126760:intron 20.0%
!! ATATGATGATAGTTAAACAA+AGG - chr1_3:55852173-55852192 Msa0126760:intron 20.0%
!!! AAGAAAAATGGTATTGAAAT+TGG + chr1_3:55852558-55852577 None:intergenic 20.0%
!! GAAGAAAAAAAAATGAAACA+TGG + chr1_3:55852690-55852709 None:intergenic 20.0%
!! TATTACATAAAAATGTTGAG+TGG + chr1_3:55852852-55852871 None:intergenic 20.0%
!!! AATTAGCTATTTGTTACTAT+TGG + chr1_3:55852880-55852899 None:intergenic 20.0%
!!! AATTTTAAGAAGCAAATCAA+TGG + chr1_3:55853557-55853576 None:intergenic 20.0%
!!! TTTCCAATTCTAAAATAGAA+TGG - chr1_3:55853602-55853621 Msa0126760:intron 20.0%
!!! TTCCAATTCTAAAATAGAAT+GGG - chr1_3:55853603-55853622 Msa0126760:intron 20.0%
!!! AGAAAATGATTGACATTTTT+GGG - chr1_3:55854017-55854036 Msa0126760:intron 20.0%
!! TTTAATCATTTAACTAGAGT+CGG - chr1_3:55854102-55854121 Msa0126760:intron 20.0%
!! TTTCTCGTCAATTAAATAAA+AGG + chr1_3:55854703-55854722 None:intergenic 20.0%
!! AAAAATCACCATTTCAAATA+TGG + chr1_3:55854922-55854941 None:intergenic 20.0%
!!! GATTTTTATCTAAGTAACAT+TGG - chr1_3:55854935-55854954 Msa0126760:intron 20.0%
!! CTGAAAAAAAAAAGTTAACA+TGG + chr1_3:55855253-55855272 None:intergenic 20.0%
!! GCCTTAAATGTATAATTATT+TGG - chr1_3:55855478-55855497 Msa0126760:intron 20.0%
!! GCCAAATAATTATACATTTA+AGG + chr1_3:55855482-55855501 None:intergenic 20.0%
!!! ACATTGCTTACTATTTTTTA+TGG - chr1_3:55855519-55855538 Msa0126760:intron 20.0%
!!! AGTTTTAAATTTCTTATGGA+TGG - chr1_3:55855864-55855883 Msa0126760:intron 20.0%
!!! AGTTATGTTTTCTTTGTAAA+GGG - chr1_3:55855907-55855926 Msa0126760:intron 20.0%
!!! TATTCCTAATTTTCCTAATT+AGG + chr1_3:55856022-55856041 None:intergenic 20.0%
!!! TGAAACTTTGATTTTGGTTT+GGG + chr1_3:55847777-55847796 None:intergenic 25.0%
!!! ATGAAACTTTGATTTTGGTT+TGG + chr1_3:55847778-55847797 None:intergenic 25.0%
! TTAATAATTTACTCCATGTC+CGG + chr1_3:55848452-55848471 None:intergenic 25.0%
!!! AAAAGTTAGTTGATAACTGA+CGG - chr1_3:55848510-55848529 Msa0126760:intron 25.0%
! GTTCGGTAAAATAAAATTAG+CGG - chr1_3:55848607-55848626 Msa0126760:CDS 25.0%
! TTCGGTAAAATAAAATTAGC+GGG - chr1_3:55848608-55848627 Msa0126760:CDS 25.0%
! TTAAATTCAAGTGACTTCAA+TGG - chr1_3:55848772-55848791 Msa0126760:intron 25.0%
!! ATTTTACGATTTACTATGCA+TGG - chr1_3:55848836-55848855 Msa0126760:intron 25.0%
! ATTGAAAAAAAGGGAAGAAA+AGG - chr1_3:55849161-55849180 Msa0126760:intron 25.0%
! TTGAAAAAAAGGGAAGAAAA+GGG - chr1_3:55849162-55849181 Msa0126760:intron 25.0%
! CACGTGAAATTTGTAATATA+AGG + chr1_3:55849267-55849286 None:intergenic 25.0%
!!! TTCATTATTCTTATTTTGGC+AGG - chr1_3:55849345-55849364 Msa0126760:intron 25.0%
! AACAAGCAGTAACAAAAAAT+GGG + chr1_3:55849721-55849740 None:intergenic 25.0%
! AAACAAGCAGTAACAAAAAA+TGG + chr1_3:55849722-55849741 None:intergenic 25.0%
! TTTGTTACTGCTTGTTTATA+TGG - chr1_3:55849725-55849744 Msa0126760:intron 25.0%
! ACTGATGTGCTAATTTAAAT+TGG - chr1_3:55850119-55850138 Msa0126760:intron 25.0%
! AATGATACATGTTTATAAGC+AGG + chr1_3:55850319-55850338 None:intergenic 25.0%
! TATCATTAATGAGATCAATG+AGG - chr1_3:55850332-55850351 Msa0126760:intron 25.0%
! ATCATTAATGAGATCAATGA+GGG - chr1_3:55850333-55850352 Msa0126760:intron 25.0%
!!! TGAACAATGTGTACATTTTT+TGG + chr1_3:55850624-55850643 None:intergenic 25.0%
! GAAAATAGAAAATGTTAACG+GGG - chr1_3:55850700-55850719 Msa0126760:intron 25.0%
!! CTTTTCCTACAAAGTATATA+TGG - chr1_3:55850846-55850865 Msa0126760:intron 25.0%
! TTTGACCATATATACTTTGT+AGG + chr1_3:55850854-55850873 None:intergenic 25.0%
!! GTTTTACATACAAAATAGCA+TGG - chr1_3:55851179-55851198 Msa0126760:CDS 25.0%
! TTTACATACAAAATAGCATG+GGG - chr1_3:55851181-55851200 Msa0126760:CDS 25.0%
! AAACTAATTCCATTCTAAGT+TGG + chr1_3:55851312-55851331 None:intergenic 25.0%
!!! CTTACGAGTATATCATTTTT+TGG - chr1_3:55851444-55851463 Msa0126760:CDS 25.0%
! TTCATGACAATTTAAAGGTA+AGG - chr1_3:55851708-55851727 Msa0126760:intron 25.0%
!! TTCTAATGCAATGTTTCTAA+CGG - chr1_3:55851810-55851829 Msa0126760:intron 25.0%
!! AAGTGATTTTGTTCTACATT+TGG + chr1_3:55851928-55851947 None:intergenic 25.0%
! TAACTATCATCATATCAATC+AGG + chr1_3:55852168-55852187 None:intergenic 25.0%
! AAAAAACACGTTATCTAGAT+TGG - chr1_3:55852290-55852309 Msa0126760:intron 25.0%
! AAAAACACGTTATCTAGATT+GGG - chr1_3:55852291-55852310 Msa0126760:intron 25.0%
!! AATCTAAATTTTGCTTGCAT+CGG + chr1_3:55853245-55853264 None:intergenic 25.0%
! TTGTAACAGTTAATCTTAAG+TGG + chr1_3:55853268-55853287 None:intergenic 25.0%
! GTTACAACATACAATGATAA+TGG - chr1_3:55853281-55853300 Msa0126760:intron 25.0%
!! AACATATTGATTGCAAATGA+AGG + chr1_3:55853481-55853500 None:intergenic 25.0%
! ATGAATATACTTTCTTAGTG+CGG - chr1_3:55853644-55853663 Msa0126760:intron 25.0%
!! ACTCTTCTTTGAAAATTATG+TGG - chr1_3:55853817-55853836 Msa0126760:intron 25.0%
!! CTCTTCTTTGAAAATTATGT+GGG - chr1_3:55853818-55853837 Msa0126760:intron 25.0%
! TTACACTACTTAATATGTGT+TGG - chr1_3:55853961-55853980 Msa0126760:intron 25.0%
!! GAGAAAATGATTGACATTTT+TGG - chr1_3:55854016-55854035 Msa0126760:intron 25.0%
!! GAAAATGATTGACATTTTTG+GGG - chr1_3:55854018-55854037 Msa0126760:intron 25.0%
!! ATTAGTTTCTAACTTACAAG+TGG + chr1_3:55854333-55854352 None:intergenic 25.0%
! GTTAGAAACTAATTCAAACT+AGG - chr1_3:55854340-55854359 Msa0126760:CDS 25.0%
!! GTGATTATACACAACTTTTA+CGG + chr1_3:55854517-55854536 None:intergenic 25.0%
! AATTAAATAAAAGGCTGGTA+TGG + chr1_3:55854694-55854713 None:intergenic 25.0%
!! GAGAAACATTTTACATTACT+GGG - chr1_3:55854717-55854736 Msa0126760:intron 25.0%
!!! AGAGTCTTATTTTTCTCTTT+GGG + chr1_3:55855052-55855071 None:intergenic 25.0%
!!! TTTTCGCTAAACTTTGAAAT+AGG - chr1_3:55855300-55855319 Msa0126760:intron 25.0%
!! TTTGAAATAGGATTCTTACA+TGG - chr1_3:55855312-55855331 Msa0126760:intron 25.0%
! TTGAAATAGGATTCTTACAT+GGG - chr1_3:55855313-55855332 Msa0126760:intron 25.0%
! TTTAACATTAGAATATTGGC+AGG + chr1_3:55855818-55855837 None:intergenic 25.0%
!! GAGTTATGTTTTCTTTGTAA+AGG - chr1_3:55855906-55855925 Msa0126760:intron 25.0%
!!! AAAGGGAGTTTTTATTTTTG+AGG - chr1_3:55855924-55855943 Msa0126760:intron 25.0%
!!! AGTTTTTATTTTTGAGGCAA+GGG - chr1_3:55855930-55855949 Msa0126760:intron 25.0%
! TATTCTATGTTTGCCTAATT+AGG - chr1_3:55856006-55856025 Msa0126760:CDS 25.0%
! TTTGCCTAATTAGGAAAATT+AGG - chr1_3:55856015-55856034 Msa0126760:CDS 25.0%
! CAAAGTTTCATTTTATAGCG+CGG - chr1_3:55847787-55847806 Msa0126760:three_prime_UTR 30.0%
AGAAAATGAAACCCTAAGAA+TGG + chr1_3:55848025-55848044 None:intergenic 30.0%
TGACCAGTTACTTCAATAAT+CGG + chr1_3:55848115-55848134 None:intergenic 30.0%
! TGGATCTGTTGTTATTGTTA+GGG - chr1_3:55848162-55848181 Msa0126760:three_prime_UTR 30.0%
TCTGTTCGTGAAAAATTTAC+TGG - chr1_3:55848241-55848260 Msa0126760:three_prime_UTR 30.0%
AAAAATTTACTGGCGTCATT+AGG - chr1_3:55848251-55848270 Msa0126760:three_prime_UTR 30.0%
!! TTTTACCATTGTTATTGCTC+TGG - chr1_3:55848284-55848303 Msa0126760:three_prime_UTR 30.0%
! TTTTTCCAGAGCAATAACAA+TGG + chr1_3:55848292-55848311 None:intergenic 30.0%
TAATAATTTACTCCATGTCC+GGG + chr1_3:55848451-55848470 None:intergenic 30.0%
!!! GGGTAGTTTTAAGTTTATAG+CGG - chr1_3:55848568-55848587 Msa0126760:CDS 30.0%
TCGGTAAAATAAAATTAGCG+GGG - chr1_3:55848609-55848628 Msa0126760:CDS 30.0%
ATTATATAATAAGTCGCCAG+TGG - chr1_3:55848634-55848653 Msa0126760:intron 30.0%
ACAAAATTAAAAGCTACCAC+TGG + chr1_3:55848653-55848672 None:intergenic 30.0%
TTGGTAAAGTTCACTTAAAG+TGG - chr1_3:55848904-55848923 Msa0126760:CDS 30.0%
!!! CATAGGTTTTTTGCAAATTG+AGG + chr1_3:55849013-55849032 None:intergenic 30.0%
TCAGTTAAATCTTGTCTGTT+TGG - chr1_3:55849199-55849218 Msa0126760:intron 30.0%
ATTTCACGTGTTTCATCATT+TGG - chr1_3:55849277-55849296 Msa0126760:intron 30.0%
!!! TTTTTTTATCAGCTTTCCCT+TGG - chr1_3:55849555-55849574 Msa0126760:intron 30.0%
GAAGCAATGTTGTTAAATAG+CGG - chr1_3:55849788-55849807 Msa0126760:intron 30.0%
! AATATTTAGCGAATCGACTT+GGG + chr1_3:55849951-55849970 None:intergenic 30.0%
AAATATTTAGCGAATCGACT+TGG + chr1_3:55849952-55849971 None:intergenic 30.0%
ACAAAATGAAATGCTTAGCT+AGG - chr1_3:55850546-55850565 Msa0126760:intron 30.0%
! CTAAATACAGAAAGTACAAC+AGG + chr1_3:55850893-55850912 None:intergenic 30.0%
CTGTTGTACTTTCTGTATTT+AGG - chr1_3:55850891-55850910 Msa0126760:intron 30.0%
CTTTCTTTGTTCAATTTGAC+CGG + chr1_3:55850964-55850983 None:intergenic 30.0%
AATTTCTCACTCTAACAACA+AGG + chr1_3:55851086-55851105 None:intergenic 30.0%
TTACATACAAAATAGCATGG+GGG - chr1_3:55851182-55851201 Msa0126760:CDS 30.0%
ATATTAGCGTGTGACATTAA+TGG + chr1_3:55851255-55851274 None:intergenic 30.0%
AGTTGAAATTGTATGCTTTG+TGG - chr1_3:55851575-55851594 Msa0126760:CDS 30.0%
! TATGCTTTGTGGTTTTCAAT+TGG - chr1_3:55851586-55851605 Msa0126760:intron 30.0%
!!! TGGTAGTTTTATCAAACTTG+AGG - chr1_3:55851623-55851642 Msa0126760:intron 30.0%
! TATTTCCTTTTCTAACTCGA+TGG - chr1_3:55851658-55851677 Msa0126760:intron 30.0%
TTTAAAGGTAAGGTGTGAAA+CGG - chr1_3:55851718-55851737 Msa0126760:intron 30.0%
! ATGTGGTCTTAAAAAATCTC+AGG + chr1_3:55851767-55851786 None:intergenic 30.0%
TTGCATTAGAAACATGAAGT+AGG + chr1_3:55851801-55851820 None:intergenic 30.0%
!! ACATTTGGAGCTTTTATTGA+TGG + chr1_3:55851913-55851932 None:intergenic 30.0%
ACACGTAACTTCAATGTATT+TGG + chr1_3:55852062-55852081 None:intergenic 30.0%
TACATTGAAGTTACGTGTTA+AGG - chr1_3:55852064-55852083 Msa0126760:intron 30.0%
AATGAAACATGGGAAATGAA+TGG + chr1_3:55852679-55852698 None:intergenic 30.0%
! TGAAATTATTATCGGTGTCT+AGG - chr1_3:55853130-55853149 Msa0126760:intron 30.0%
GGTGTTAATGTCATATTCAT+TGG - chr1_3:55853151-55853170 Msa0126760:intron 30.0%
GAACTATCCAATTTCTGATA+TGG - chr1_3:55853327-55853346 Msa0126760:intron 30.0%
!! GTTAGTTAAGAGTGCTAATT+TGG + chr1_3:55853393-55853412 None:intergenic 30.0%
TGAAAATGAAACCACCTTAT+CGG + chr1_3:55853446-55853465 None:intergenic 30.0%
! AATTGAAGCATCTGTTTACA+TGG - chr1_3:55853513-55853532 Msa0126760:intron 30.0%
!!! CACCCATTCTATTTTAGAAT+TGG + chr1_3:55853608-55853627 None:intergenic 30.0%
AATGGGTGCATTTGTTTAAT+GGG - chr1_3:55853620-55853639 Msa0126760:intron 30.0%
GGATTTACATTTACCTGATT+TGG + chr1_3:55853789-55853808 None:intergenic 30.0%
! TTCAAAGAAGAGTTTTCTCA+TGG + chr1_3:55853810-55853829 None:intergenic 30.0%
!! ATTTTTCAACAAGTGCATAG+AGG - chr1_3:55854134-55854153 Msa0126760:intron 30.0%
GCTACTATTTAGAAAACTTG+TGG + chr1_3:55854189-55854208 None:intergenic 30.0%
! TACGATGTCATGTTGTTATT+AGG - chr1_3:55854469-55854488 Msa0126760:intron 30.0%
!!! TGTTTTTTTTGGGTGCATTT+TGG + chr1_3:55854652-55854671 None:intergenic 30.0%
AAAATGCACCCAAAAAAAAC+AGG - chr1_3:55854651-55854670 Msa0126760:intron 30.0%
AAATGCACCCAAAAAAAACA+GGG - chr1_3:55854652-55854671 Msa0126760:intron 30.0%
TCGTCAATTAAATAAAAGGC+TGG + chr1_3:55854699-55854718 None:intergenic 30.0%
! CGAGAAACATTTTACATTAC+TGG - chr1_3:55854716-55854735 Msa0126760:intron 30.0%
!!! TCAATTTTCTGGCTATTCAT+TGG - chr1_3:55854796-55854815 Msa0126760:intron 30.0%
TTATTGTGCACAAAGGTAAT+AGG + chr1_3:55854857-55854876 None:intergenic 30.0%
CAATGTTGCCATATTTGAAA+TGG - chr1_3:55854911-55854930 Msa0126760:intron 30.0%
TTGTTCATCTATTACTGAAG+AGG + chr1_3:55855029-55855048 None:intergenic 30.0%
!!! CAGAGTCTTATTTTTCTCTT+TGG + chr1_3:55855053-55855072 None:intergenic 30.0%
AGAGAAAAATAAGACTCTGA+AGG - chr1_3:55855054-55855073 Msa0126760:intron 30.0%
ACTAATCTGTATCTGTTTAG+CGG - chr1_3:55855083-55855102 Msa0126760:intron 30.0%
! AGCGAAAAACTAAGTTTTCT+AGG + chr1_3:55855288-55855307 None:intergenic 30.0%
TAGTTAACAAAAGCAAGTTG+AGG + chr1_3:55855446-55855465 None:intergenic 30.0%
! ACATTTAAGGCATCAGAAAT+CGG + chr1_3:55855469-55855488 None:intergenic 30.0%
ATGAGTTTGGTACTTCATTA+TGG + chr1_3:55855706-55855725 None:intergenic 30.0%
TACCAAACTCATGACATAAT+TGG - chr1_3:55855714-55855733 Msa0126760:CDS 30.0%
!!! GAGTTTTTATTTTTGAGGCA+AGG - chr1_3:55855929-55855948 Msa0126760:intron 30.0%
!!! GTTTTTATTTTTGAGGCAAG+GGG - chr1_3:55855931-55855950 Msa0126760:intron 30.0%
AGAATTTAGTAGTCACAGTT+AGG - chr1_3:55856099-55856118 Msa0126760:CDS 30.0%
TTAGGAAATCAGTTAGAAGT+TGG - chr1_3:55856117-55856136 Msa0126760:exon 30.0%
! TGATTTACATAAGAGTACAG+TGG + chr1_3:55856169-55856188 None:intergenic 30.0%
AAATGAAACCCTAAGAATGG+AGG + chr1_3:55848022-55848041 None:intergenic 35.0%
AGACCGATTATTGAAGTAAC+TGG - chr1_3:55848109-55848128 Msa0126760:three_prime_UTR 35.0%
CTAACAATAACAACAGATCC+AGG + chr1_3:55848163-55848182 None:intergenic 35.0%
! CTGGATCTGTTGTTATTGTT+AGG - chr1_3:55848161-55848180 Msa0126760:three_prime_UTR 35.0%
GAAGCTGATATTATGTGTGT+TGG - chr1_3:55848211-55848230 Msa0126760:three_prime_UTR 35.0%
AATTAGCTGGTAACTGACTA+GGG - chr1_3:55848366-55848385 Msa0126760:CDS 35.0%
! AGCTCAAATGGTTTGAGTTA+AGG - chr1_3:55848397-55848416 Msa0126760:CDS 35.0%
! GCTCAAATGGTTTGAGTTAA+GGG - chr1_3:55848398-55848417 Msa0126760:CDS 35.0%
! GATAAGTTAGCTGAAGTGTT+CGG - chr1_3:55848590-55848609 Msa0126760:CDS 35.0%
CGATACATAGAAGATTAGCA+TGG - chr1_3:55848679-55848698 Msa0126760:intron 35.0%
TTAGAACATAACAGCGTAAC+AGG + chr1_3:55848817-55848836 None:intergenic 35.0%
TACCAATGCTAATCAAATGC+AGG + chr1_3:55848890-55848909 None:intergenic 35.0%
TAAAGTTCACTTAAAGTGGC+TGG - chr1_3:55848908-55848927 Msa0126760:CDS 35.0%
! CACCTTTGTTTGATGTAATG+CGG + chr1_3:55848970-55848989 None:intergenic 35.0%
TCCTGATACGTTAATCTCTA+TGG - chr1_3:55849053-55849072 Msa0126760:intron 35.0%
TCCATAGAGATTAACGTATC+AGG + chr1_3:55849057-55849076 None:intergenic 35.0%
GATAGTCATGCACAGTTATA+GGG + chr1_3:55849245-55849264 None:intergenic 35.0%
TGACATTGTTAAAGCTCTTG+TGG - chr1_3:55849430-55849449 Msa0126760:intron 35.0%
ACAACTGCAAAAAATGAGCT+TGG - chr1_3:55849600-55849619 Msa0126760:intron 35.0%
!! AAATGAGCTTGGTGTTGTTT+CGG - chr1_3:55849611-55849630 Msa0126760:intron 35.0%
CAGTAACAAAAAATGGGAAC+TGG + chr1_3:55849715-55849734 None:intergenic 35.0%
!! ATATTTAGCGAATCGACTTG+GGG + chr1_3:55849950-55849969 None:intergenic 35.0%
TAACTAGAGAGAGATAAGCT+TGG - chr1_3:55850171-55850190 Msa0126760:CDS 35.0%
ATTAGAGTTATGCGTGTTCA+AGG - chr1_3:55850262-55850281 Msa0126760:CDS 35.0%
TTAGAGTTATGCGTGTTCAA+GGG - chr1_3:55850263-55850282 Msa0126760:CDS 35.0%
GAAGTGTAACACTTGTACTT+TGG - chr1_3:55850378-55850397 Msa0126760:intron 35.0%
TAACACTTGTACTTTGGTCT+AGG - chr1_3:55850384-55850403 Msa0126760:intron 35.0%
AACACTTGTACTTTGGTCTA+GGG - chr1_3:55850385-55850404 Msa0126760:intron 35.0%
! AATTTTAGGCCCTGGATTTT+AGG - chr1_3:55850418-55850437 Msa0126760:intron 35.0%
! TCATTTTGTCTCCATCATGA+TGG + chr1_3:55850535-55850554 None:intergenic 35.0%
!!! TTTTCGTACATTGGCTTATC+TGG - chr1_3:55850750-55850769 Msa0126760:intron 35.0%
TCTGTATTTAGGTGCAACTT+TGG - chr1_3:55850902-55850921 Msa0126760:intron 35.0%
! CAACTTTGGTTCCAATAAGT+TGG - chr1_3:55850916-55850935 Msa0126760:intron 35.0%
CGGTCAAATTGAACAAAGAA+AGG - chr1_3:55850962-55850981 Msa0126760:intron 35.0%
TGAACAAAGAAAGGTTGCAA+AGG - chr1_3:55850971-55850990 Msa0126760:intron 35.0%
AACATGACTAAAGATCAAGC+TGG - chr1_3:55851006-55851025 Msa0126760:intron 35.0%
AATGGGATACATGTGGTAAT+CGG - chr1_3:55851398-55851417 Msa0126760:CDS 35.0%
TCAGTCTAAGCTTATTGCAT+AGG - chr1_3:55851530-55851549 Msa0126760:CDS 35.0%
!! AGTAGGTTCTAAATGCAATG+TGG + chr1_3:55851784-55851803 None:intergenic 35.0%
TCTGTAGTTTCCTTCATGTT+TGG - chr1_3:55851838-55851857 Msa0126760:intron 35.0%
ATGTTTGGCTATGTTGAGAT+TGG - chr1_3:55851853-55851872 Msa0126760:intron 35.0%
!! GAGCTTTTATTGATGGCATT+GGG + chr1_3:55851906-55851925 None:intergenic 35.0%
! ATTTTCTGTCTGAGTTTCAG+TGG - chr1_3:55852336-55852355 Msa0126760:intron 35.0%
TACACAGCTTCAATCAATCA+TGG - chr1_3:55852382-55852401 Msa0126760:intron 35.0%
GGTTGGAATGAAGACAATAA+TGG - chr1_3:55852403-55852422 Msa0126760:intron 35.0%
GAAGGAAAACAATGAAGAGA+AGG + chr1_3:55852434-55852453 None:intergenic 35.0%
ATTGGTAGAAGTGGTAGTAT+GGG + chr1_3:55852540-55852559 None:intergenic 35.0%
AATTGGTAGAAGTGGTAGTA+TGG + chr1_3:55852541-55852560 None:intergenic 35.0%
! GGTATTGAAATTGGTAGAAG+TGG + chr1_3:55852549-55852568 None:intergenic 35.0%
GGTAGGTTTGTGAAGAAAAA+TGG + chr1_3:55852570-55852589 None:intergenic 35.0%
TTCTGTAGAATTAGGCGAAT+TGG + chr1_3:55852618-55852637 None:intergenic 35.0%
!!! TTTGTTGGAGGAGTGTTTTA+GGG + chr1_3:55852646-55852665 None:intergenic 35.0%
!!! ATTTGTTGGAGGAGTGTTTT+AGG + chr1_3:55852647-55852666 None:intergenic 35.0%
AATGGCTTACAGCAATTTGT+TGG + chr1_3:55852661-55852680 None:intergenic 35.0%
AACTTTCCAAAGTAATCAGG+AGG + chr1_3:55852771-55852790 None:intergenic 35.0%
GGAAACTTTCCAAAGTAATC+AGG + chr1_3:55852774-55852793 None:intergenic 35.0%
AATATAAACCACGTGTATCG+TGG + chr1_3:55853089-55853108 None:intergenic 35.0%
! GATAGTTCTACAGGAAATCA+AGG + chr1_3:55853315-55853334 None:intergenic 35.0%
! CAGAAATTGGATAGTTCTAC+AGG + chr1_3:55853324-55853343 None:intergenic 35.0%
! TTAGTTGTTATGCACCGATA+AGG - chr1_3:55853429-55853448 Msa0126760:intron 35.0%
GAATGGGTGCATTTGTTTAA+TGG - chr1_3:55853619-55853638 Msa0126760:intron 35.0%
! TACTTTTGCTTCTTAGCACT+TGG - chr1_3:55853864-55853883 Msa0126760:intron 35.0%
TGGAAAAAGGTTTCAGTCAA+TGG - chr1_3:55853905-55853924 Msa0126760:intron 35.0%
GGAAAAAGGTTTCAGTCAAT+GGG - chr1_3:55853906-55853925 Msa0126760:intron 35.0%
CACTACTTAATATGTGTTGG+TGG - chr1_3:55853964-55853983 Msa0126760:intron 35.0%
! TCCTAATCTTGTTTGCTACA+GGG - chr1_3:55854363-55854382 Msa0126760:CDS 35.0%
! GTTGTTATTAGGTTCAAACG+CGG - chr1_3:55854480-55854499 Msa0126760:intron 35.0%
GAAATCGATACGCTTCAATT+AGG + chr1_3:55854610-55854629 None:intergenic 35.0%
CATGTTATGTTTGGCATTCA+TGG + chr1_3:55854743-55854762 None:intergenic 35.0%
! ACACAGAGCAATCAATTTTC+TGG - chr1_3:55854785-55854804 Msa0126760:intron 35.0%
!! CCATGTTTTATTGTGCACAA+AGG + chr1_3:55854864-55854883 None:intergenic 35.0%
CCTTTGTGCACAATAAAACA+TGG - chr1_3:55854861-55854880 Msa0126760:intron 35.0%
ATCTAAGTAACATTGGCATC+TGG - chr1_3:55854942-55854961 Msa0126760:intron 35.0%
ATTCAGCAAAATCAGTAACC+TGG - chr1_3:55855134-55855153 Msa0126760:intron 35.0%
ACACCCACTAAAGCAAATAT+TGG - chr1_3:55855194-55855213 Msa0126760:intron 35.0%
CACCCACTAAAGCAAATATT+GGG - chr1_3:55855195-55855214 Msa0126760:intron 35.0%
ACCCACTAAAGCAAATATTG+GGG - chr1_3:55855196-55855215 Msa0126760:intron 35.0%
CCCAAAAACAAATGCAATTG+CGG + chr1_3:55855222-55855241 None:intergenic 35.0%
!! CCGCAATTGCATTTGTTTTT+GGG - chr1_3:55855219-55855238 Msa0126760:intron 35.0%
TCAAGGAATTCAAAACACTC+CGG - chr1_3:55855343-55855362 Msa0126760:intron 35.0%
TGCCAATTATGTCATGAGTT+TGG + chr1_3:55855719-55855738 None:intergenic 35.0%
TGAAAGAAACTCGACAAATC+TGG + chr1_3:55855790-55855809 None:intergenic 35.0%
! GGAGTTGGGTTGTTTATTAT+CGG - chr1_3:55855952-55855971 Msa0126760:intron 35.0%
GTGACTACTAAATTCTGAGT+TGG + chr1_3:55856095-55856114 None:intergenic 35.0%
AGAATCTTCCTTCGCGTTAA+TGG - chr1_3:55847816-55847835 Msa0126760:three_prime_UTR 40.0%
! GTTTTGCCTATTACTTCTCC+TGG + chr1_3:55847865-55847884 None:intergenic 40.0%
GTAACTGGTCATAAAGCTCA+TGG - chr1_3:55848124-55848143 Msa0126760:three_prime_UTR 40.0%
ATAACAACAGATCCAGGTTC+AGG + chr1_3:55848157-55848176 None:intergenic 40.0%
CCAGCTAATTCATTCGCTAT+CGG + chr1_3:55848356-55848375 None:intergenic 40.0%
GAATTAGCTGGTAACTGACT+AGG - chr1_3:55848365-55848384 Msa0126760:CDS 40.0%
ATTAGCTGGTAACTGACTAG+GGG - chr1_3:55848367-55848386 Msa0126760:CDS 40.0%
TGAGTTAAGGGAAAACGAGT+TGG - chr1_3:55848410-55848429 Msa0126760:CDS 40.0%
ATTCTAGACAATGCTGTCTC+TGG - chr1_3:55848737-55848756 Msa0126760:CDS 40.0%
ATCAAATGCAGGCTAATGGT+GGG + chr1_3:55848879-55848898 None:intergenic 40.0%
AATCAAATGCAGGCTAATGG+TGG + chr1_3:55848880-55848899 None:intergenic 40.0%
GCTAATCAAATGCAGGCTAA+TGG + chr1_3:55848883-55848902 None:intergenic 40.0%
AGCCTGCATTTGATTAGCAT+TGG - chr1_3:55848885-55848904 Msa0126760:CDS 40.0%
ACTTAAAGTGGCTGGCAAAT+TGG - chr1_3:55848916-55848935 Msa0126760:CDS 40.0%
TTTGATGTAATGCGGAGACA+AGG + chr1_3:55848962-55848981 None:intergenic 40.0%
CTCCGCATTACATCAAACAA+AGG - chr1_3:55848965-55848984 Msa0126760:intron 40.0%
GGATAGTCATGCACAGTTAT+AGG + chr1_3:55849246-55849265 None:intergenic 40.0%
! AGAGCTTTAACAATGTCACC+AGG + chr1_3:55849428-55849447 None:intergenic 40.0%
!! CAATTGACTTGAGGGCAATT+GGG + chr1_3:55849497-55849516 None:intergenic 40.0%
!! GTAGCAACCAATTGACTTGA+GGG + chr1_3:55849505-55849524 None:intergenic 40.0%
!! AGTAGCAACCAATTGACTTG+AGG + chr1_3:55849506-55849525 None:intergenic 40.0%
! AGTCAATTGGTTGCTACTTG+AGG - chr1_3:55849508-55849527 Msa0126760:intron 40.0%
TCTGCATTCTCTTGTCTAGT+TGG - chr1_3:55849751-55849770 Msa0126760:intron 40.0%
! TCTCTTGTCTAGTTGGTACT+TGG - chr1_3:55849758-55849777 Msa0126760:intron 40.0%
! GCTATAGTGCTATTGCATAG+CGG - chr1_3:55849810-55849829 Msa0126760:intron 40.0%
!! TATTTAGCGAATCGACTTGG+GGG + chr1_3:55849949-55849968 None:intergenic 40.0%
TAGCACAACAACACTCATTG+AGG - chr1_3:55850030-55850049 Msa0126760:CDS 40.0%
AGCACAACAACACTCATTGA+GGG - chr1_3:55850031-55850050 Msa0126760:CDS 40.0%
ACAACACTCATTGAGGGAAT+AGG - chr1_3:55850037-55850056 Msa0126760:CDS 40.0%
TAATGAGATCAATGAGGGAG+TGG - chr1_3:55850338-55850357 Msa0126760:intron 40.0%
!! AGGGACCTGGTTTGAATTTT+AGG - chr1_3:55850404-55850423 Msa0126760:intron 40.0%
CTTGAAGTGAACCATCATGA+TGG - chr1_3:55850521-55850540 Msa0126760:intron 40.0%
AGCTAGGAATGATGCATTTC+TGG - chr1_3:55850562-55850581 Msa0126760:intron 40.0%
! ACAGAAAGTACAACAGGTTG+AGG + chr1_3:55850887-55850906 None:intergenic 40.0%
TGCATCTCAGTCCAACTTAT+TGG + chr1_3:55850930-55850949 None:intergenic 40.0%
TGTTCAATTTGACCGGATAG+TGG + chr1_3:55850957-55850976 None:intergenic 40.0%
TTGTAGCCATACAAGAACAC+AGG - chr1_3:55851120-55851139 Msa0126760:intron 40.0%
TTGATTTCAGTCATGTGAGC+AGG - chr1_3:55851211-55851230 Msa0126760:intron 40.0%
TTCCCAAAATGCTGTGCAAA+TGG - chr1_3:55851380-55851399 Msa0126760:CDS 40.0%
TCCCAAAATGCTGTGCAAAT+GGG - chr1_3:55851381-55851400 Msa0126760:CDS 40.0%
! TCCCATTTGCACAGCATTTT+GGG + chr1_3:55851385-55851404 None:intergenic 40.0%
! ATCCCATTTGCACAGCATTT+TGG + chr1_3:55851386-55851405 None:intergenic 40.0%
ATGGGATACATGTGGTAATC+GGG - chr1_3:55851399-55851418 Msa0126760:CDS 40.0%
AGCTTAGACTGAACTAGCAA+CGG + chr1_3:55851522-55851541 None:intergenic 40.0%
GTCTAAGCTTATTGCATAGG+TGG - chr1_3:55851533-55851552 Msa0126760:CDS 40.0%
!! AATTGGAGACTGATTTGCAG+TGG - chr1_3:55851603-55851622 Msa0126760:intron 40.0%
ATCATTGTCCCCATCATTCT+CGG + chr1_3:55851684-55851703 None:intergenic 40.0%
CTCAACATAGCCAAACATGA+AGG + chr1_3:55851851-55851870 None:intergenic 40.0%
! TTATTGATGGCATTGGGCTA+AGG + chr1_3:55851900-55851919 None:intergenic 40.0%
!! GGAGCTTTTATTGATGGCAT+TGG + chr1_3:55851907-55851926 None:intergenic 40.0%
CAGCTTCAATCAATCATGGT+TGG - chr1_3:55852386-55852405 Msa0126760:intron 40.0%
GAATGATTGGGTGTGATGTT+GGG + chr1_3:55852492-55852511 None:intergenic 40.0%
AGTTGTGGAAGGGAATGATT+GGG + chr1_3:55852504-55852523 None:intergenic 40.0%
AAGTTGTGGAAGGGAATGAT+TGG + chr1_3:55852505-55852524 None:intergenic 40.0%
ATCTGAGTGAAGTTGTGGAA+GGG + chr1_3:55852514-55852533 None:intergenic 40.0%
AATCTGAGTGAAGTTGTGGA+AGG + chr1_3:55852515-55852534 None:intergenic 40.0%
TTGGTAGAAGTGGTAGTATG+GGG + chr1_3:55852539-55852558 None:intergenic 40.0%
TCCCAATTCACGAGTTTATG+TGG - chr1_3:55852715-55852734 Msa0126760:intron 40.0%
CCCACATAAACTCGTGAATT+GGG + chr1_3:55852719-55852738 None:intergenic 40.0%
CCCAATTCACGAGTTTATGT+GGG - chr1_3:55852716-55852735 Msa0126760:intron 40.0%
ACCCACATAAACTCGTGAAT+TGG + chr1_3:55852720-55852739 None:intergenic 40.0%
! TATGTGGGTTTTTACGTTGC+AGG - chr1_3:55852731-55852750 Msa0126760:intron 40.0%
TGGTAAGTTACAATGTGCAC+AGG + chr1_3:55852832-55852851 None:intergenic 40.0%
! GCACTGATACTACATGTTGA+AGG - chr1_3:55853018-55853037 Msa0126760:CDS 40.0%
GTTCTACAGGAAATCAAGGA+AGG + chr1_3:55853311-55853330 None:intergenic 40.0%
CTGCTTGCCATATCAGAAAT+TGG + chr1_3:55853337-55853356 None:intergenic 40.0%
TCTTAGTGCGGTAAAGAGTT+AGG - chr1_3:55853656-55853675 Msa0126760:intron 40.0%
AAGTTTCGCCACTAAAAAGC+GGG + chr1_3:55853735-55853754 None:intergenic 40.0%
GAAGTTTCGCCACTAAAAAG+CGG + chr1_3:55853736-55853755 None:intergenic 40.0%
GTCAAATAAGCCTCCATCAA+AGG + chr1_3:55853758-55853777 None:intergenic 40.0%
TTGATGGAGGCTTATTTGAC+AGG - chr1_3:55853758-55853777 Msa0126760:intron 40.0%
TTTGCTTCTTAGCACTTGGA+AGG - chr1_3:55853868-55853887 Msa0126760:intron 40.0%
GTTTGGTATCTGCTGGAAAA+AGG - chr1_3:55853892-55853911 Msa0126760:intron 40.0%
TTTCAGTCAATGGGACAGTA+TGG - chr1_3:55853915-55853934 Msa0126760:intron 40.0%
! ATACCTTTTGTGTCTCACCT+TGG + chr1_3:55853941-55853960 None:intergenic 40.0%
CTGATATCCGAATAGAGTGA+AGG - chr1_3:55854051-55854070 Msa0126760:intron 40.0%
ATATCCGAATAGAGTGAAGG+TGG - chr1_3:55854054-55854073 Msa0126760:intron 40.0%
GAATCCACCTTCACTCTATT+CGG + chr1_3:55854061-55854080 None:intergenic 40.0%
CAACAAGTGCATAGAGGAAA+AGG - chr1_3:55854140-55854159 Msa0126760:intron 40.0%
! GTCCTAATCTTGTTTGCTAC+AGG - chr1_3:55854362-55854381 Msa0126760:CDS 40.0%
ACCCTGTAGCAAACAAGATT+AGG + chr1_3:55854367-55854386 None:intergenic 40.0%
TGCTAAACTCTTACCGTAGA+GGG + chr1_3:55854396-55854415 None:intergenic 40.0%
ATGCTAAACTCTTACCGTAG+AGG + chr1_3:55854397-55854416 None:intergenic 40.0%
!! AGCGTATCGATTTCAGACTA+TGG - chr1_3:55854616-55854635 Msa0126760:intron 40.0%
CGATTTCAGACTATGGTTAG+TGG - chr1_3:55854623-55854642 Msa0126760:intron 40.0%
! CTGCAGAAGCATGTTATGTT+TGG + chr1_3:55854752-55854771 None:intergenic 40.0%
TGCACAAAGGTAATAGGTGA+TGG + chr1_3:55854851-55854870 None:intergenic 40.0%
GATCGCAAAAGCAATGATTG+AGG - chr1_3:55854976-55854995 Msa0126760:intron 40.0%
CAAAAGCAATGATTGAGGCT+GGG - chr1_3:55854981-55855000 Msa0126760:intron 40.0%
AGCAAAATCAGTAACCTGGT+TGG - chr1_3:55855138-55855157 Msa0126760:intron 40.0%
GCCCCAATATTTGCTTTAGT+GGG + chr1_3:55855200-55855219 None:intergenic 40.0%
!! GCCGCAATTGCATTTGTTTT+TGG - chr1_3:55855218-55855237 Msa0126760:intron 40.0%
! CAATGCTTTGATGCTTGCTA+AGG - chr1_3:55855391-55855410 Msa0126760:intron 40.0%
TTATTTGGCTGCAGTCTTTG+AGG - chr1_3:55855493-55855512 Msa0126760:intron 40.0%
TATTTGGCTGCAGTCTTTGA+GGG - chr1_3:55855494-55855513 Msa0126760:intron 40.0%
TTATGTCTGCTTCGTTTGCT+CGG - chr1_3:55855621-55855640 Msa0126760:intron 40.0%
! TGCTCGGTTTTGCTTGTAAA+TGG - chr1_3:55855637-55855656 Msa0126760:intron 40.0%
! TCGGTTTTGCTTGTAAATGG+TGG - chr1_3:55855640-55855659 Msa0126760:intron 40.0%
GTTGGAGAAATGAGAGGATT+GGG + chr1_3:55856077-55856096 None:intergenic 40.0%
AGTTGGAGAAATGAGAGGAT+TGG + chr1_3:55856078-55856097 None:intergenic 40.0%
! TTCTGAGTTGGAGAAATGAG+AGG + chr1_3:55856083-55856102 None:intergenic 40.0%
GTGACACCAGGAGAAGTAAT+AGG - chr1_3:55847856-55847875 Msa0126760:three_prime_UTR 45.0%
AAAACCCACGACGTTAAAGC+CGG - chr1_3:55847880-55847899 Msa0126760:three_prime_UTR 45.0%
TGCTGTGTATGTTCCTCTTC+CGG + chr1_3:55847902-55847921 None:intergenic 45.0%
ACAGTCTACGCTTCCTTAAC+TGG - chr1_3:55847934-55847953 Msa0126760:three_prime_UTR 45.0%
!! TGCTCTGGAAAAAGTAGCTG+AGG - chr1_3:55848299-55848318 Msa0126760:three_prime_UTR 45.0%
CCGATAGCGAATGAATTAGC+TGG - chr1_3:55848353-55848372 Msa0126760:CDS 45.0%
TTAGCTGGTAACTGACTAGG+GGG - chr1_3:55848368-55848387 Msa0126760:CDS 45.0%
TAAAGTGGCTGGCAAATTGG+TGG - chr1_3:55848919-55848938 Msa0126760:CDS 45.0%
AAAGGGAAGAAAAGGGTCGT+AGG - chr1_3:55849169-55849188 Msa0126760:intron 45.0%
! ATGCACTTGTCTTTTCGTCC+TGG - chr1_3:55849407-55849426 Msa0126760:intron 45.0%
!! CCAATTGACTTGAGGGCAAT+TGG + chr1_3:55849498-55849517 None:intergenic 45.0%
CCAATTGCCCTCAAGTCAAT+TGG - chr1_3:55849495-55849514 Msa0126760:intron 45.0%
AGCTTTCCCTTGGAAATGCA+CGG - chr1_3:55849565-55849584 Msa0126760:intron 45.0%
! CTAGTTGGTACTTGGTTGTG+AGG - chr1_3:55849766-55849785 Msa0126760:intron 45.0%
!! ATTTAGCGAATCGACTTGGG+GGG + chr1_3:55849948-55849967 None:intergenic 45.0%
CACTCATTGAGGGAATAGGT+TGG - chr1_3:55850041-55850060 Msa0126760:CDS 45.0%
!! AGGGAATAGGTTGGTGAGAT+TGG - chr1_3:55850050-55850069 Msa0126760:CDS 45.0%
!! GGGAATAGGTTGGTGAGATT+GGG - chr1_3:55850051-55850070 Msa0126760:CDS 45.0%
!! GGAATAGGTTGGTGAGATTG+GGG - chr1_3:55850052-55850071 Msa0126760:CDS 45.0%
CAGGGCCTAAAATTCAAACC+AGG + chr1_3:55850412-55850431 None:intergenic 45.0%
!! CTGGTTTGAATTTTAGGCCC+TGG - chr1_3:55850410-55850429 Msa0126760:intron 45.0%
ACAAACGGGCCTAAAATCCA+GGG + chr1_3:55850430-55850449 None:intergenic 45.0%
! TTAGCATGCACTGACAGGTA+GGG - chr1_3:55850725-55850744 Msa0126760:intron 45.0%
! GGTAGGGGATTTTCGTACAT+TGG - chr1_3:55850741-55850760 Msa0126760:intron 45.0%
CTGGAATCTGTTATCCCCTT+GGG - chr1_3:55851025-55851044 Msa0126760:intron 45.0%
TGCAAGCCTGTGTTCTTGTA+TGG + chr1_3:55851129-55851148 None:intergenic 45.0%
CTGTGCAAATGGGATACATG+TGG - chr1_3:55851391-55851410 Msa0126760:CDS 45.0%
GCTTAGACTGAACTAGCAAC+GGG + chr1_3:55851521-55851540 None:intergenic 45.0%
GGGTGTTAAAGGGCAGAATT+TGG + chr1_3:55852462-55852481 None:intergenic 45.0%
GGGAAAGAGTGGGTGTTAAA+GGG + chr1_3:55852472-55852491 None:intergenic 45.0%
TGGGAAAGAGTGGGTGTTAA+AGG + chr1_3:55852473-55852492 None:intergenic 45.0%
GTGTGATGTTGGGAAAGAGT+GGG + chr1_3:55852482-55852501 None:intergenic 45.0%
GGAATGATTGGGTGTGATGT+TGG + chr1_3:55852493-55852512 None:intergenic 45.0%
TGGTAGAAGTGGTAGTATGG+GGG + chr1_3:55852538-55852557 None:intergenic 45.0%
TGTTAGAGCAAAACGCAGAG+AGG + chr1_3:55852591-55852610 None:intergenic 45.0%
GGGTCAGGTTCTGTAGAATT+AGG + chr1_3:55852626-55852645 None:intergenic 45.0%
!! GGCTTACAGCAATTTGTTGG+AGG + chr1_3:55852658-55852677 None:intergenic 45.0%
GTTTCCCAACGATCTTCGAT+TGG - chr1_3:55852788-55852807 Msa0126760:intron 45.0%
ACGTCCAATCGAAGATCGTT+GGG + chr1_3:55852795-55852814 None:intergenic 45.0%
TACGTCCAATCGAAGATCGT+TGG + chr1_3:55852796-55852815 None:intergenic 45.0%
CCAAGACAGGTCCATTTGAA+AGG + chr1_3:55852967-55852986 None:intergenic 45.0%
CCTTTCAAATGGACCTGTCT+TGG - chr1_3:55852964-55852983 Msa0126760:CDS 45.0%
AAATGGACCTGTCTTGGATG+AGG - chr1_3:55852970-55852989 Msa0126760:CDS 45.0%
! CTACATGTTGAAGGTGTGTC+CGG - chr1_3:55853027-55853046 Msa0126760:intron 45.0%
! GTTGTTATGCACCGATAAGG+TGG - chr1_3:55853432-55853451 Msa0126760:intron 45.0%
TGCTAAACCTATCTCGAGCA+TGG - chr1_3:55853687-55853706 Msa0126760:intron 45.0%
GCTAAACCTATCTCGAGCAT+GGG - chr1_3:55853688-55853707 Msa0126760:intron 45.0%
AAAGCGGGAGGATGATGTAT+CGG + chr1_3:55853720-55853739 None:intergenic 45.0%
!!! ATCATCCTCCCGCTTTTTAG+TGG - chr1_3:55853724-55853743 Msa0126760:intron 45.0%
AGTGGCGAAACTTCCTTTGA+TGG - chr1_3:55853742-55853761 Msa0126760:intron 45.0%
ACAGGGTCATTTACCCTCTA+CGG - chr1_3:55854380-55854399 Msa0126760:intron 45.0%
!!! CTGCGAGCCCTGTTTTTTTT+GGG + chr1_3:55854662-55854681 None:intergenic 45.0%
!!! ACTGCGAGCCCTGTTTTTTT+TGG + chr1_3:55854663-55854682 None:intergenic 45.0%
GCAAAAGCAATGATTGAGGC+TGG - chr1_3:55854980-55854999 Msa0126760:intron 45.0%
GGCCCCAATATTTGCTTTAG+TGG + chr1_3:55855201-55855220 None:intergenic 45.0%
CTTACATGGGAGATAGCTCA+AGG - chr1_3:55855326-55855345 Msa0126760:intron 45.0%
GCATACTGCAAAGAACTCTC+CGG + chr1_3:55855365-55855384 None:intergenic 45.0%
ATTTGGCTGCAGTCTTTGAG+GGG - chr1_3:55855495-55855514 Msa0126760:intron 45.0%
AGTAAGTGCGGACAACAAAG+TGG + chr1_3:55855547-55855566 None:intergenic 45.0%
TTGTTGTCCGCACTTACTTC+AGG - chr1_3:55855549-55855568 Msa0126760:intron 45.0%
TGTTGTCCGCACTTACTTCA+GGG - chr1_3:55855550-55855569 Msa0126760:intron 45.0%
!!! ATTTTTGAGGCAAGGGGAGT+TGG - chr1_3:55855937-55855956 Msa0126760:intron 45.0%
!!! TTTTTGAGGCAAGGGGAGTT+GGG - chr1_3:55855938-55855957 Msa0126760:intron 45.0%
!! AAAAAATATATTATATACAA+GGG + chr1_3:55849683-55849702 None:intergenic 5.0%
!! TAAAAAATATATTATATACA+AGG + chr1_3:55849684-55849703 None:intergenic 5.0%
!!! TTTTAATTTGAAATTATTAT+CGG - chr1_3:55853122-55853141 Msa0126760:intron 5.0%
CTCTGCTTCCATTAACGCGA+AGG + chr1_3:55847827-55847846 None:intergenic 50.0%
AATGGAAGCAGAGCGAGACA+TGG - chr1_3:55847834-55847853 Msa0126760:three_prime_UTR 50.0%
! TCTTCCGGCTTTAACGTCGT+GGG + chr1_3:55847887-55847906 None:intergenic 50.0%
! GGTGTGACGGAAACCAGTTA+AGG + chr1_3:55847950-55847969 None:intergenic 50.0%
! AAGCAGGAGGTATGGTGTGA+CGG + chr1_3:55847963-55847982 None:intergenic 50.0%
TCACACCATACCTCCTGCTT+CGG - chr1_3:55847963-55847982 Msa0126760:three_prime_UTR 50.0%
AGAATCCGAAGCAGGAGGTA+TGG + chr1_3:55847971-55847990 None:intergenic 50.0%
ACCAGGTTCGGCAATAGCTT+CGG - chr1_3:55847995-55848014 Msa0126760:three_prime_UTR 50.0%
AGCTTCGGACCTCCATTCTT+AGG - chr1_3:55848010-55848029 Msa0126760:three_prime_UTR 50.0%
GCTTCGGACCTCCATTCTTA+GGG - chr1_3:55848011-55848030 Msa0126760:three_prime_UTR 50.0%
ACAGATCCAGGTTCAGGAAC+AGG + chr1_3:55848151-55848170 None:intergenic 50.0%
TGGTAACTGACTAGGGGGTT+GGG - chr1_3:55848373-55848392 Msa0126760:CDS 50.0%
! GGAAAACGAGTTGGAGATCC+TGG - chr1_3:55848419-55848438 Msa0126760:CDS 50.0%
TGGAGATCCTGGTTCAAACC+CGG - chr1_3:55848430-55848449 Msa0126760:intron 50.0%
CCAGCTACTTCATCTGCTAG+CGG + chr1_3:55848544-55848563 None:intergenic 50.0%
CTAGCAGATGAAGTAGCTGG+TGG - chr1_3:55848544-55848563 Msa0126760:CDS 50.0%
AGACAAGGCCACTCAAAACC+AGG + chr1_3:55848947-55848966 None:intergenic 50.0%
GCTTTCCCTTGGAAATGCAC+GGG - chr1_3:55849566-55849585 Msa0126760:intron 50.0%
GTAAGCCCGTGCATTTCCAA+GGG + chr1_3:55849574-55849593 None:intergenic 50.0%
AGTAAGCCCGTGCATTTCCA+AGG + chr1_3:55849575-55849594 None:intergenic 50.0%
CGCAATACGCTCTTTAGTGC+TGG - chr1_3:55849857-55849876 Msa0126760:intron 50.0%
!! TTTAGCGAATCGACTTGGGG+GGG + chr1_3:55849947-55849966 None:intergenic 50.0%
!! TAGGTTGGTGAGATTGGGGT+AGG - chr1_3:55850056-55850075 Msa0126760:intron 50.0%
!! TTGGGGTAGGCTTTGGAGTT+TGG - chr1_3:55850069-55850088 Msa0126760:intron 50.0%
!! TGGGGTAGGCTTTGGAGTTT+GGG - chr1_3:55850070-55850089 Msa0126760:intron 50.0%
TGTACTTTGGTCTAGGGACC+TGG - chr1_3:55850391-55850410 Msa0126760:intron 50.0%
CACAAACGGGCCTAAAATCC+AGG + chr1_3:55850431-55850450 None:intergenic 50.0%
CTACCTGTCAGTGCATGCTA+AGG + chr1_3:55850726-55850745 None:intergenic 50.0%
! CTTAGCATGCACTGACAGGT+AGG - chr1_3:55850724-55850743 Msa0126760:intron 50.0%
! TAGCATGCACTGACAGGTAG+GGG - chr1_3:55850726-55850745 Msa0126760:intron 50.0%
GAGATGCAGTGTCCACTATC+CGG - chr1_3:55850942-55850961 Msa0126760:intron 50.0%
GCTGGAATCTGTTATCCCCT+TGG - chr1_3:55851024-55851043 Msa0126760:intron 50.0%
AAAGACCTTCTCAGCCCAAG+GGG + chr1_3:55851042-55851061 None:intergenic 50.0%
CAAAGACCTTCTCAGCCCAA+GGG + chr1_3:55851043-55851062 None:intergenic 50.0%
ACAAAGACCTTCTCAGCCCA+AGG + chr1_3:55851044-55851063 None:intergenic 50.0%
CTCGGCCATCGAGTTAGAAA+AGG + chr1_3:55851666-55851685 None:intergenic 50.0%
AACTCGATGGCCGAGAATGA+TGG - chr1_3:55851671-55851690 Msa0126760:intron 50.0%
ACTCGATGGCCGAGAATGAT+GGG - chr1_3:55851672-55851691 Msa0126760:intron 50.0%
GGTAAGGTGTGAAACGGTGA+AGG - chr1_3:55851724-55851743 Msa0126760:intron 50.0%
GGGCAGAATTTGGAGAGAGA+AGG + chr1_3:55852452-55852471 None:intergenic 50.0%
GGTGTGATGTTGGGAAAGAG+TGG + chr1_3:55852483-55852502 None:intergenic 50.0%
GGGGAATCTGAGTGAAGTTG+TGG + chr1_3:55852519-55852538 None:intergenic 50.0%
AGAGCAAAACGCAGAGAGGT+AGG + chr1_3:55852587-55852606 None:intergenic 50.0%
!!! TGGAGGAGTGTTTTAGGGTC+AGG + chr1_3:55852641-55852660 None:intergenic 50.0%
GCTGCGTTCGACCTTTCAAA+TGG - chr1_3:55852953-55852972 Msa0126760:intron 50.0%
GCACTAACCTCATCCAAGAC+AGG + chr1_3:55852980-55852999 None:intergenic 50.0%
ATACACCGACACGTGTCTAC+CGG + chr1_3:55853049-55853068 None:intergenic 50.0%
! GTAGACACGTGTCGGTGTAT+CGG - chr1_3:55853049-55853068 Msa0126760:intron 50.0%
TTTCGCCACTAAAAAGCGGG+AGG + chr1_3:55853732-55853751 None:intergenic 50.0%
GGCGAAACTTCCTTTGATGG+AGG - chr1_3:55853745-55853764 Msa0126760:intron 50.0%
! TTGACAGGCACTGCCAAATC+AGG - chr1_3:55853773-55853792 Msa0126760:intron 50.0%
!! CTTAGCACTTGGAAGGCGTT+TGG - chr1_3:55853875-55853894 Msa0126760:intron 50.0%
TCAATGGGACAGTATGGCCA+AGG - chr1_3:55853921-55853940 Msa0126760:intron 50.0%
TGGCCAAGGTGAGACACAAA+AGG - chr1_3:55853935-55853954 Msa0126760:intron 50.0%
GTTGTCCGCACTTACTTCAG+GGG - chr1_3:55855551-55855570 Msa0126760:intron 50.0%
TTGTCCGCACTTACTTCAGG+GGG - chr1_3:55855552-55855571 Msa0126760:intron 50.0%
!!! TCAGGGGGGCTTGTTTTACT+TGG - chr1_3:55855567-55855586 Msa0126760:intron 50.0%
! CTCTTCCGGCTTTAACGTCG+TGG + chr1_3:55847888-55847907 None:intergenic 55.0%
CACGACGTTAAAGCCGGAAG+AGG - chr1_3:55847886-55847905 Msa0126760:three_prime_UTR 55.0%
TCAGGAGAATCCGAAGCAGG+AGG + chr1_3:55847976-55847995 None:intergenic 55.0%
TGGTCAGGAGAATCCGAAGC+AGG + chr1_3:55847979-55847998 None:intergenic 55.0%
TGCTTCGGATTCTCCTGACC+AGG - chr1_3:55847978-55847997 Msa0126760:three_prime_UTR 55.0%
CGGATTCTCCTGACCAGGTT+CGG - chr1_3:55847983-55848002 Msa0126760:three_prime_UTR 55.0%
AGCTATTGCCGAACCTGGTC+AGG + chr1_3:55847994-55848013 None:intergenic 55.0%
TCCGAAGCTATTGCCGAACC+TGG + chr1_3:55847999-55848018 None:intergenic 55.0%
CATGGACCTGTTCCTGAACC+TGG - chr1_3:55848142-55848161 Msa0126760:three_prime_UTR 55.0%
CTGGTAACTGACTAGGGGGT+TGG - chr1_3:55848372-55848391 Msa0126760:CDS 55.0%
AGGGGGTTGGGTAGCTCAAA+TGG - chr1_3:55848385-55848404 Msa0126760:CDS 55.0%
TCCTGGTTCAAACCCGGACA+TGG - chr1_3:55848436-55848455 Msa0126760:intron 55.0%
TCCATGTCCGGGTTTGAACC+AGG + chr1_3:55848440-55848459 None:intergenic 55.0%
CCGCTAGCAGATGAAGTAGC+TGG - chr1_3:55848541-55848560 Msa0126760:intron 55.0%
GCAGATGAAGTAGCTGGTGG+CGG - chr1_3:55848547-55848566 Msa0126760:CDS 55.0%
CAGATGAAGTAGCTGGTGGC+GGG - chr1_3:55848548-55848567 Msa0126760:CDS 55.0%
!!! TGGTGGTGCCTGGTTTTGAG+TGG - chr1_3:55848936-55848955 Msa0126760:CDS 55.0%
TTGGCAGGCAGCAAGACGTT+AGG - chr1_3:55849360-55849379 Msa0126760:intron 55.0%
TGGCAGGCAGCAAGACGTTA+GGG - chr1_3:55849361-55849380 Msa0126760:intron 55.0%
!! GTTTCGGCAGAAAGCACTGC+TGG - chr1_3:55849627-55849646 Msa0126760:intron 55.0%
GGCGTAGCACTGTTGCATAG+AGG - chr1_3:55849901-55849920 Msa0126760:intron 55.0%
!! ATCGACTTGGGGGGGAATAG+TGG + chr1_3:55849939-55849958 None:intergenic 55.0%
GGTGAGATTGGGGTAGGCTT+TGG - chr1_3:55850062-55850081 Msa0126760:intron 55.0%
!! GGGGTAGGCTTTGGAGTTTG+GGG - chr1_3:55850071-55850090 Msa0126760:intron 55.0%
GTTATCCCCTTGGGCTGAGA+AGG - chr1_3:55851034-55851053 Msa0126760:intron 55.0%
CTCGATGGCCGAGAATGATG+GGG - chr1_3:55851673-55851692 Msa0126760:intron 55.0%
TGTGTCCGGTAGACACGTGT+CGG - chr1_3:55853041-55853060 Msa0126760:intron 55.0%
GCACATCACCACGATACACG+TGG - chr1_3:55853078-55853097 Msa0126760:intron 55.0%
CAGTCTCCCATGCTCGAGAT+AGG + chr1_3:55853697-55853716 None:intergenic 55.0%
!! GGAAGGCGTTTGGTATCTGC+TGG - chr1_3:55853885-55853904 Msa0126760:intron 55.0%
CCAAACTGCAGTTGCCAACC+AGG + chr1_3:55855155-55855174 None:intergenic 55.0%
CCTGGTTGGCAACTGCAGTT+TGG - chr1_3:55855152-55855171 Msa0126760:intron 55.0%
!! ACTGCAGTTTGGAGCACTGC+AGG - chr1_3:55855163-55855182 Msa0126760:intron 55.0%
TGTCCGCACTTACTTCAGGG+GGG - chr1_3:55855553-55855572 Msa0126760:intron 55.0%
AAGCCCCCCTGAAGTAAGTG+CGG + chr1_3:55855559-55855578 None:intergenic 55.0%
GAGCGAGACATGGTGACACC+AGG - chr1_3:55847844-55847863 Msa0126760:three_prime_UTR 60.0%
!! GCTGGCAAATTGGTGGTGCC+TGG - chr1_3:55848926-55848945 Msa0126760:CDS 60.0%
! GGGCCTTAGCATGCACTGAC+AGG - chr1_3:55850720-55850739 Msa0126760:intron 60.0%
TGGGCTAAGGCTCGCAGTGT+TGG + chr1_3:55851887-55851906 None:intergenic 60.0%
! CGTGTCGGTGTATCGGACAC+AGG - chr1_3:55853056-55853075 Msa0126760:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 55847763 55856191 55847763 ID=Msa0126760;Name=Msa0126760
chr1_3 mRNA 55847763 55856191 55847763 ID=Msa0126760-mRNA-1;Parent=Msa0126760;Name=Msa0126760-mRNA-1;_AED=0.24;_eAED=0.24;_QI=72|0.83|0.84|1|1|1|13|574|510
chr1_3 exon 55847763 55848447 55847763 ID=Msa0126760-mRNA-1:exon:17469;Parent=Msa0126760-mRNA-1
chr1_3 exon 55848542 55848632 55848542 ID=Msa0126760-mRNA-1:exon:17468;Parent=Msa0126760-mRNA-1
chr1_3 exon 55848714 55848784 55848714 ID=Msa0126760-mRNA-1:exon:17467;Parent=Msa0126760-mRNA-1
chr1_3 exon 55848879 55848977 55848879 ID=Msa0126760-mRNA-1:exon:17466;Parent=Msa0126760-mRNA-1
chr1_3 exon 55849998 55850074 55849998 ID=Msa0126760-mRNA-1:exon:17465;Parent=Msa0126760-mRNA-1
chr1_3 exon 55850160 55850292 55850160 ID=Msa0126760-mRNA-1:exon:17464;Parent=Msa0126760-mRNA-1
chr1_3 exon 55851142 55851201 55851142 ID=Msa0126760-mRNA-1:exon:17463;Parent=Msa0126760-mRNA-1
chr1_3 exon 55851284 55851598 55851284 ID=Msa0126760-mRNA-1:exon:17462;Parent=Msa0126760-mRNA-1
chr1_3 exon 55852962 55853041 55852962 ID=Msa0126760-mRNA-1:exon:17461;Parent=Msa0126760-mRNA-1
chr1_3 exon 55854306 55854387 55854306 ID=Msa0126760-mRNA-1:exon:17460;Parent=Msa0126760-mRNA-1
chr1_3 exon 55854503 55854587 55854503 ID=Msa0126760-mRNA-1:exon:17459;Parent=Msa0126760-mRNA-1
chr1_3 exon 55855682 55855845 55855682 ID=Msa0126760-mRNA-1:exon:17458;Parent=Msa0126760-mRNA-1
chr1_3 exon 55855955 55856191 55855955 ID=Msa0126760-mRNA-1:exon:17457;Parent=Msa0126760-mRNA-1
chr1_3 five_prime_UTR 55856120 55856191 55856120 ID=Msa0126760-mRNA-1:five_prime_utr;Parent=Msa0126760-mRNA-1
chr1_3 CDS 55855955 55856119 55855955 ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3 CDS 55855682 55855845 55855682 ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3 CDS 55854503 55854587 55854503 ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3 CDS 55854306 55854387 55854306 ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3 CDS 55852962 55853041 55852962 ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3 CDS 55851284 55851598 55851284 ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3 CDS 55851142 55851201 55851142 ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3 CDS 55850160 55850292 55850160 ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3 CDS 55849998 55850074 55849998 ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3 CDS 55848879 55848977 55848879 ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3 CDS 55848714 55848784 55848714 ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3 CDS 55848542 55848632 55848542 ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3 CDS 55848337 55848447 55848337 ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3 three_prime_UTR 55847763 55848336 55847763 ID=Msa0126760-mRNA-1:three_prime_utr;Parent=Msa0126760-mRNA-1
Gene Sequence

>Msa0126760

ATGGAAGCAGAGCGAGACATGGTGACACCAGGAGAAGTAATAGGCAAAACCCACGACGTTAAAGCCGGAAGAGGAACATACACAGCAACTCACAACAACACAGTCTACGCTTCCTTAACTGGTTTCCGTCACACCATACCTCCTGCTTCGGATTCTCCTGACCAGAGACCGATTATTGAAGTAACTGGTCATAAAGCTCATGGACCTGTTCCTGAACCTGGATCTGTTGTTATTGTTAGGGTTACTAAAGTGATGACTAAAATTGCTGAAGCTGATATTATGTGTGTTGGTCAGAAGTCTGTTCGTGAAAAATTTACTGGCGTCATTAGGCAGCAAGACGTTAGGGCAACTGAGATTGATAAAGTAGACATGCACTTGTCTTTTCGTCCTGGTGACATTGTTAAAGCTCTTGTGCTTTCCCTTGGAAATGCACGGGCTTACTTTCTGACAACTGCAAAAAATGAGCTTGGTGTTGTTTCGGCAGAAAGCACTGCTGGTGCAACTTTGGTTCCAATAAGTTGGACTGAGATGCAGTGTCCACTATCCGGTCAAATTGAACAAAGAAAGGTTGCAAAGTGGCTGACACAGTTTGTTGCATTGCATACACAGCTTCAATCAATCATGGTTGGAATGAAGACAATAATGGCTTCACCTTCTCTTCATTGTTTTCCTTCTCTCTCCAAATTCTGCCCTTTAACACCCACTCTTTCCCAACATCACACCCAATCATTCCCTTCCACAACTTCACTCAGATTCCCCCATACTACCACTTCTACCAATTTCAATACCATTTTTCTTCACAAACCTACCTCTCTGCGTTTTGCTCTAACAGAGTCCAATTCGCCTAATTCTACAGAACCTGACCCTAAAACACTCCTCCAACAAATTGCTGACAGTTTTGATCTTCCTCCTGATTACTTTGGAAAGTTTCCCAACGATCTTCGATTGGACTGCGGTAAAGAGTTAGGAGAGACATTGCTAAACCTATCTCGAGCATGGGAGACTGCCGATACATCATCCTCCCGCTTTTTAGTGGCGAAACTTCCTTTGATGGAGGCTTATTTGACAGGCACTGCCAAATCAGCACTTGGAAGGCGTTTGGTATCTGCTGGAAAAAGGTTTCAGTCAATGGGACAGTATGGCCAAGGTGAGACACAAAAGATCGCAAAAGCAATGATTGAGGCTGGGAGAGCTCTATCTGCTAGTTCAACCTCTTCAGTAATAGATGAACAACCCAAAGAGAAAAATAAGACTCTGAAGTTTGGAGCACTGCAGGTTGAAATTACACCCACTAAAGCAAATATTGGGGCCGCAATTGCATTTGTTTTTGGGATTCTTACATGGGAGATAGCTCAAGGAATTCAAAACACTCCGGAGAGTTCTTTGCAGTATGCAAATGACAATGCTTTGATGCTTGCTAAGTCTTTGAGGGGAACATTGCTTACTATTTTTTATGGCTCCACTTTGTTGTCCGCACTTACTTCAGGGGGGCTTGTTTTACTTGGTATACAGCTCAAATCAGAGAAAAATTGA

Protein sequence

>Msa0126760

MEAERDMVTPGEVIGKTHDVKAGRGTYTATHNNTVYASLTGFRHTIPPASDSPDQRPIIEVTGHKAHGPVPEPGSVVIVRVTKVMTKIAEADIMCVGQKSVREKFTGVIRQQDVRATEIDKVDMHLSFRPGDIVKALVLSLGNARAYFLTTAKNELGVVSAESTAGATLVPISWTEMQCPLSGQIEQRKVAKWLTQFVALHTQLQSIMVGMKTIMASPSLHCFPSLSKFCPLTPTLSQHHTQSFPSTTSLRFPHTTTSTNFNTIFLHKPTSLRFALTESNSPNSTEPDPKTLLQQIADSFDLPPDYFGKFPNDLRLDCGKELGETLLNLSRAWETADTSSSRFLVAKLPLMEAYLTGTAKSALGRRLVSAGKRFQSMGQYGQGETQKIAKAMIEAGRALSASSTSSVIDEQPKEKNKTLKFGALQVEITPTKANIGAAIAFVFGILTWEIAQGIQNTPESSLQYANDNALMLAKSLRGTLLTIFYGSTLLSALTSGGLVLLGIQLKSEKN*