AlfalfaGEDB | Msa0126760

M. sativa cultivar zhongmu-4 / Msa0126760

KEGG: K03320|K07573
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655
PFAM: PF14382.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0126760	sp\|Q9Y3B2\|EXOS1_HUMAN	41.579	190	104	3	10	198	10	193	1.56e-38	142

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0126760	A0A1S3E3F5	81.298	524	66	7	1	508	1	508	0.0	836

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0126760	0.815864	7.429371e-52	-8.615850e-47
Msa0000220	Msa0126760	0.855213	7.334510e-62	-8.615850e-47
Msa0000500	Msa0126760	0.802687	4.984133e-49	-8.615850e-47
Msa0001460	Msa0126760	0.839880	1.215839e-57	-8.615850e-47
Msa0005690	Msa0126760	0.811523	6.710415e-51	-8.615850e-47
Msa0008250	Msa0126760	0.819093	1.391845e-52	-8.615850e-47
Msa0008330	Msa0126760	0.814918	1.206052e-51	-8.615850e-47
Msa0009210	Msa0126760	0.805434	1.337632e-49	-8.615850e-47
Msa0012460	Msa0126760	0.828269	9.874063e-55	-8.615850e-47
Msa0015370	Msa0126760	0.850378	1.765009e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0126760	MtrunA17_Chr1g0189981	88.959	317	12	3	211	510	1	311	0.0	550
Msa0126760	MtrunA17_Chr1g0189991	98.958	192	2	0	1	192	1	192	5.86e-139	398

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0126760	AT5G37360.1	55.944	286	101	4	243	509	29	308	1.17e-94	290
Msa0126760	AT5G38890.1	73.118	186	48	1	7	192	5	188	2.89e-94	285

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Find 144 sgRNAs with CRISPR-Local

Find 530 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCACGACGTTAAAGC+CGG	0.582369	1_3:-55856052	Msa0126760:CDS
AAAGCGGGAGGATGATGTAT+CGG	0.576481	1_3:+55850215	None:intergenic
AAATGAGCTTGGTGTTGTTT+CGG	0.377395	1_3:-55854321	Msa0126760:CDS
AACTTTCCAAAGTAATCAGG+AGG	0.628896	1_3:+55851164	None:intergenic
AAGCAGGAGGTATGGTGTGA+CGG	0.586359	1_3:+55855972	None:intergenic
AAGTTGTGGAAGGGAATGAT+TGG	0.519012	1_3:+55851430	None:intergenic
AATCTGAGTGAAGTTGTGGA+AGG	0.603518	1_3:+55851420	None:intergenic
AATGGAAGCAGAGCGAGACA+TGG	0.663008	1_3:-55856098	Msa0126760:CDS
AATGGCTTACAGCAATTTGT+TGG	0.409856	1_3:+55851274	None:intergenic
AATTGGTAGAAGTGGTAGTA+TGG	0.262977	1_3:+55851394	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAATGAAACCCTAAGAA+TGG	+	chr1_3:55848025-55848044	None:intergenic	30.0%
TGACCAGTTACTTCAATAAT+CGG	+	chr1_3:55848115-55848134	None:intergenic	30.0%
TCTGTTCGTGAAAAATTTAC+TGG	-	chr1_3:55848241-55848260	Msa0126760:three_prime_UTR	30.0%
AAAAATTTACTGGCGTCATT+AGG	-	chr1_3:55848251-55848270	Msa0126760:three_prime_UTR	30.0%
TAATAATTTACTCCATGTCC+GGG	+	chr1_3:55848451-55848470	None:intergenic	30.0%
TCGGTAAAATAAAATTAGCG+GGG	-	chr1_3:55848609-55848628	Msa0126760:CDS	30.0%
ATTATATAATAAGTCGCCAG+TGG	-	chr1_3:55848634-55848653	Msa0126760:intron	30.0%
ACAAAATTAAAAGCTACCAC+TGG	+	chr1_3:55848653-55848672	None:intergenic	30.0%
TTGGTAAAGTTCACTTAAAG+TGG	-	chr1_3:55848904-55848923	Msa0126760:CDS	30.0%
TCAGTTAAATCTTGTCTGTT+TGG	-	chr1_3:55849199-55849218	Msa0126760:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	55847763	55856191	55847763	ID=Msa0126760;Name=Msa0126760
chr1_3	mRNA	55847763	55856191	55847763	ID=Msa0126760-mRNA-1;Parent=Msa0126760;Name=Msa0126760-mRNA-1;_AED=0.24;_eAED=0.24;_QI=72\|0.83\|0.84\|1\|1\|1\|13\|574\|510
chr1_3	exon	55847763	55848447	55847763	ID=Msa0126760-mRNA-1:exon:17469;Parent=Msa0126760-mRNA-1
chr1_3	exon	55848542	55848632	55848542	ID=Msa0126760-mRNA-1:exon:17468;Parent=Msa0126760-mRNA-1
chr1_3	exon	55848714	55848784	55848714	ID=Msa0126760-mRNA-1:exon:17467;Parent=Msa0126760-mRNA-1
chr1_3	exon	55848879	55848977	55848879	ID=Msa0126760-mRNA-1:exon:17466;Parent=Msa0126760-mRNA-1
chr1_3	exon	55849998	55850074	55849998	ID=Msa0126760-mRNA-1:exon:17465;Parent=Msa0126760-mRNA-1
chr1_3	exon	55850160	55850292	55850160	ID=Msa0126760-mRNA-1:exon:17464;Parent=Msa0126760-mRNA-1
chr1_3	exon	55851142	55851201	55851142	ID=Msa0126760-mRNA-1:exon:17463;Parent=Msa0126760-mRNA-1
chr1_3	exon	55851284	55851598	55851284	ID=Msa0126760-mRNA-1:exon:17462;Parent=Msa0126760-mRNA-1
chr1_3	exon	55852962	55853041	55852962	ID=Msa0126760-mRNA-1:exon:17461;Parent=Msa0126760-mRNA-1
chr1_3	exon	55854306	55854387	55854306	ID=Msa0126760-mRNA-1:exon:17460;Parent=Msa0126760-mRNA-1
chr1_3	exon	55854503	55854587	55854503	ID=Msa0126760-mRNA-1:exon:17459;Parent=Msa0126760-mRNA-1
chr1_3	exon	55855682	55855845	55855682	ID=Msa0126760-mRNA-1:exon:17458;Parent=Msa0126760-mRNA-1
chr1_3	exon	55855955	55856191	55855955	ID=Msa0126760-mRNA-1:exon:17457;Parent=Msa0126760-mRNA-1
chr1_3	five_prime_UTR	55856120	55856191	55856120	ID=Msa0126760-mRNA-1:five_prime_utr;Parent=Msa0126760-mRNA-1
chr1_3	CDS	55855955	55856119	55855955	ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3	CDS	55855682	55855845	55855682	ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3	CDS	55854503	55854587	55854503	ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3	CDS	55854306	55854387	55854306	ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3	CDS	55852962	55853041	55852962	ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3	CDS	55851284	55851598	55851284	ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3	CDS	55851142	55851201	55851142	ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3	CDS	55850160	55850292	55850160	ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3	CDS	55849998	55850074	55849998	ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3	CDS	55848879	55848977	55848879	ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3	CDS	55848714	55848784	55848714	ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3	CDS	55848542	55848632	55848542	ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3	CDS	55848337	55848447	55848337	ID=Msa0126760-mRNA-1:cds;Parent=Msa0126760-mRNA-1
chr1_3	three_prime_UTR	55847763	55848336	55847763	ID=Msa0126760-mRNA-1:three_prime_utr;Parent=Msa0126760-mRNA-1

Gene Sequence

>Msa0126760

ATGGAAGCAGAGCGAGACATGGTGACACCAGGAGAAGTAATAGGCAAAACCCACGACGTTAAAGCCGGAAGAGGAACATACACAGCAACTCACAACAACACAGTCTACGCTTCCTTAACTGGTTTCCGTCACACCATACCTCCTGCTTCGGATTCTCCTGACCAGAGACCGATTATTGAAGTAACTGGTCATAAAGCTCATGGACCTGTTCCTGAACCTGGATCTGTTGTTATTGTTAGGGTTACTAAAGTGATGACTAAAATTGCTGAAGCTGATATTATGTGTGTTGGTCAGAAGTCTGTTCGTGAAAAATTTACTGGCGTCATTAGGCAGCAAGACGTTAGGGCAACTGAGATTGATAAAGTAGACATGCACTTGTCTTTTCGTCCTGGTGACATTGTTAAAGCTCTTGTGCTTTCCCTTGGAAATGCACGGGCTTACTTTCTGACAACTGCAAAAAATGAGCTTGGTGTTGTTTCGGCAGAAAGCACTGCTGGTGCAACTTTGGTTCCAATAAGTTGGACTGAGATGCAGTGTCCACTATCCGGTCAAATTGAACAAAGAAAGGTTGCAAAGTGGCTGACACAGTTTGTTGCATTGCATACACAGCTTCAATCAATCATGGTTGGAATGAAGACAATAATGGCTTCACCTTCTCTTCATTGTTTTCCTTCTCTCTCCAAATTCTGCCCTTTAACACCCACTCTTTCCCAACATCACACCCAATCATTCCCTTCCACAACTTCACTCAGATTCCCCCATACTACCACTTCTACCAATTTCAATACCATTTTTCTTCACAAACCTACCTCTCTGCGTTTTGCTCTAACAGAGTCCAATTCGCCTAATTCTACAGAACCTGACCCTAAAACACTCCTCCAACAAATTGCTGACAGTTTTGATCTTCCTCCTGATTACTTTGGAAAGTTTCCCAACGATCTTCGATTGGACTGCGGTAAAGAGTTAGGAGAGACATTGCTAAACCTATCTCGAGCATGGGAGACTGCCGATACATCATCCTCCCGCTTTTTAGTGGCGAAACTTCCTTTGATGGAGGCTTATTTGACAGGCACTGCCAAATCAGCACTTGGAAGGCGTTTGGTATCTGCTGGAAAAAGGTTTCAGTCAATGGGACAGTATGGCCAAGGTGAGACACAAAAGATCGCAAAAGCAATGATTGAGGCTGGGAGAGCTCTATCTGCTAGTTCAACCTCTTCAGTAATAGATGAACAACCCAAAGAGAAAAATAAGACTCTGAAGTTTGGAGCACTGCAGGTTGAAATTACACCCACTAAAGCAAATATTGGGGCCGCAATTGCATTTGTTTTTGGGATTCTTACATGGGAGATAGCTCAAGGAATTCAAAACACTCCGGAGAGTTCTTTGCAGTATGCAAATGACAATGCTTTGATGCTTGCTAAGTCTTTGAGGGGAACATTGCTTACTATTTTTTATGGCTCCACTTTGTTGTCCGCACTTACTTCAGGGGGGCTTGTTTTACTTGGTATACAGCTCAAATCAGAGAAAAATTGA

Protein sequence

>Msa0126760

MEAERDMVTPGEVIGKTHDVKAGRGTYTATHNNTVYASLTGFRHTIPPASDSPDQRPIIEVTGHKAHGPVPEPGSVVIVRVTKVMTKIAEADIMCVGQKSVREKFTGVIRQQDVRATEIDKVDMHLSFRPGDIVKALVLSLGNARAYFLTTAKNELGVVSAESTAGATLVPISWTEMQCPLSGQIEQRKVAKWLTQFVALHTQLQSIMVGMKTIMASPSLHCFPSLSKFCPLTPTLSQHHTQSFPSTTSLRFPHTTTSTNFNTIFLHKPTSLRFALTESNSPNSTEPDPKTLLQQIADSFDLPPDYFGKFPNDLRLDCGKELGETLLNLSRAWETADTSSSRFLVAKLPLMEAYLTGTAKSALGRRLVSAGKRFQSMGQYGQGETQKIAKAMIEAGRALSASSTSSVIDEQPKEKNKTLKFGALQVEITPTKANIGAAIAFVFGILTWEIAQGIQNTPESSLQYANDNALMLAKSLRGTLLTIFYGSTLLSALTSGGLVLLGIQLKSEKN*