AlfalfaGEDB | Msa1033040

M. sativa cultivar zhongmu-4 / Msa1033040

KEGG: K13347|K13348
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF04117.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033040	XP_024627327.2	96.850	254	8	0	14	267	7	260	2.21e-174	491

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033040	sp\|Q4IPX8\|SYM1_GIBZE	33.918	171	107	3	92	258	3	171	5.92e-29	111

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033040	A0A396H4D1	96.850	254	8	0	14	267	7	260	1.05e-174	491

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0182790	Msa1033040	0.823616	1.258761e-53	-8.615850e-47
Msa0389610	Msa1033040	0.824734	6.874774e-54	-8.615850e-47
Msa0528610	Msa1033040	0.811927	5.481402e-51	-8.615850e-47
Msa0840380	Msa1033040	-0.805243	1.466836e-49	-8.615850e-47
Msa0876360	Msa1033040	-0.801555	8.520354e-49	-8.615850e-47
Msa0946280	Msa1033040	0.812755	3.613497e-51	-8.615850e-47
Msa1029060	Msa1033040	0.806151	9.456206e-50	-8.615850e-47
Msa1033040	Msa1080330	0.802246	6.143763e-49	-8.615850e-47
Msa1033040	Msa1156150	0.803089	4.117092e-49	-8.615850e-47
Msa1033040	Msa1191050	0.806206	9.205528e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033040	MtrunA17_Chr7g0255351	96.850	254	8	0	14	267	7	260	2.03e-178	491
Msa1033040	MtrunA17_Chr6g0465041	28.814	177	124	2	93	267	52	228	6.61e-22	91.3
Msa1033040	MtrunA17_Chr1g0207521	27.429	175	121	4	93	263	81	253	4.28e-19	84.0
Msa1033040	MtrunA17_Chr8g0390511	27.083	192	112	4	95	258	9	200	1.69e-15	73.6
Msa1033040	MtrunA17_Chr7g0255321	57.143	119	41	3	2	115	1	114	7.65e-15	72.8
Msa1033040	MtrunA17_Chr1g0187331	29.651	172	115	5	97	264	12	181	3.61e-14	69.3
Msa1033040	MtrunA17_Chr2g0288811	27.119	177	125	4	94	267	9	184	1.73e-12	64.3
Msa1033040	MtrunA17_Chr7g0255331	56.780	118	40	4	1	112	3	115	3.45e-12	65.5
Msa1033040	MtrunA17_Chr1g0147191	27.041	196	118	5	96	266	7	202	1.28e-11	62.8
Msa1033040	MtrunA17_Chr4g0040451	27.528	178	110	3	104	262	42	219	3.90e-11	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033040	AT5G19750.1	71.186	177	51	0	91	267	112	288	6.29e-90	268
Msa1033040	AT2G14860.1	28.902	173	121	2	93	263	73	245	3.88e-22	92.8
Msa1033040	AT5G43140.1	27.746	173	123	2	92	262	77	249	6.85e-21	89.4
Msa1033040	AT4G33905.1	27.907	172	122	2	93	262	82	253	1.76e-18	82.8
Msa1033040	AT4G14305.1	29.651	172	117	4	97	265	12	182	6.17e-15	71.6
Msa1033040	AT5G43140.2	29.730	111	77	1	92	201	77	187	1.43e-12	65.1
Msa1033040	AT4G04470.1	25.143	175	127	4	94	265	11	184	1.54e-12	65.1
Msa1033040	AT4G04470.2	25.143	175	127	4	94	265	11	184	1.54e-12	65.1
Msa1033040	AT3G24570.1	24.878	205	117	3	96	263	7	211	3.51e-12	65.1

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Find 102 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACCCTGTTCCCGTAA+AGG	0.483262	7_1:+68120153	Msa1033040:CDS
AAAATTGCACCTGATGTTCC+GGG	0.442134	7_1:-68121896	None:intergenic
AAACGCAGTTGAGCAAAGGG+AGG	0.710630	7_1:-68119106	None:intergenic
AAGAAAACTCCAAGGAATAT+GGG	0.487471	7_1:-68122059	None:intergenic
AAGCAACAACATTGGCAGCA+AGG	0.594671	7_1:-68123284	None:intergenic
AATGAAGCTGATGATGGAGG+AGG	0.659950	7_1:+68119217	Msa1033040:CDS
AATGATACCTGCTTAAGCTT+AGG	0.595325	7_1:-68122125	None:intergenic
AATTGGAGATTTAATTTGCC+AGG	0.446331	7_1:+68120201	Msa1033040:CDS
ACGGAAACGCAGTTGAGCAA+AGG	0.578014	7_1:-68119110	None:intergenic
ACGGAGCGGGATAACAGAAG+GGG	0.671481	7_1:-68119016	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTGTATAAAGAGAGCTTA+TGG	+	chr7_1:68119341-68119360	Msa1033040:intron	30.0%
TCTAACACACTCTTAATTTC+AGG	+	chr7_1:68119831-68119850	Msa1033040:intron	30.0%
AAGTTGTAACACATATTGCA+TGG	+	chr7_1:68119998-68120017	Msa1033040:intron	30.0%
TCTGCAATTCTTAACCTAAT+TGG	+	chr7_1:68120184-68120203	Msa1033040:CDS	30.0%
GGCAAATTAAATCTCCAATT+AGG	-	chr7_1:68120201-68120220	None:intergenic	30.0%
TCAAGATGTATGAGATACAA+AGG	+	chr7_1:68120307-68120326	Msa1033040:intron	30.0%
TTGCTTATAATTAAGAACGG+AGG	+	chr7_1:68120472-68120491	Msa1033040:intron	30.0%
TGCTTATAATTAAGAACGGA+GGG	+	chr7_1:68120473-68120492	Msa1033040:intron	30.0%
AAAGCATAACTATTCTTCCT+CGG	-	chr7_1:68120627-68120646	None:intergenic	30.0%
TCTATGAATAAGATTGCTGA+TGG	+	chr7_1:68120684-68120703	Msa1033040:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	68118810	68124118	68118810	ID=Msa1033040;Name=Msa1033040
chr7_1	mRNA	68118810	68124118	68118810	ID=Msa1033040-mRNA-1;Parent=Msa1033040;Name=Msa1033040-mRNA-1;_AED=0.28;_eAED=0.28;_QI=164\|1\|1\|1\|0.85\|0.87\|8\|238\|267
chr7_1	exon	68118810	68119260	68118810	ID=Msa1033040-mRNA-1:exon:15820;Parent=Msa1033040-mRNA-1
chr7_1	exon	68120135	68120222	68120135	ID=Msa1033040-mRNA-1:exon:15821;Parent=Msa1033040-mRNA-1
chr7_1	exon	68121415	68121509	68121415	ID=Msa1033040-mRNA-1:exon:15822;Parent=Msa1033040-mRNA-1
chr7_1	exon	68121865	68121937	68121865	ID=Msa1033040-mRNA-1:exon:15823;Parent=Msa1033040-mRNA-1
chr7_1	exon	68122047	68122139	68122047	ID=Msa1033040-mRNA-1:exon:15824;Parent=Msa1033040-mRNA-1
chr7_1	exon	68122268	68122354	68122268	ID=Msa1033040-mRNA-1:exon:15825;Parent=Msa1033040-mRNA-1
chr7_1	exon	68123282	68123362	68123282	ID=Msa1033040-mRNA-1:exon:15826;Parent=Msa1033040-mRNA-1
chr7_1	exon	68123881	68124118	68123881	ID=Msa1033040-mRNA-1:exon:15827;Parent=Msa1033040-mRNA-1
chr7_1	five_prime_UTR	68118810	68118973	68118810	ID=Msa1033040-mRNA-1:five_prime_utr;Parent=Msa1033040-mRNA-1
chr7_1	CDS	68118974	68119260	68118974	ID=Msa1033040-mRNA-1:cds;Parent=Msa1033040-mRNA-1
chr7_1	CDS	68120135	68120222	68120135	ID=Msa1033040-mRNA-1:cds;Parent=Msa1033040-mRNA-1
chr7_1	CDS	68121415	68121509	68121415	ID=Msa1033040-mRNA-1:cds;Parent=Msa1033040-mRNA-1
chr7_1	CDS	68121865	68121937	68121865	ID=Msa1033040-mRNA-1:cds;Parent=Msa1033040-mRNA-1
chr7_1	CDS	68122047	68122139	68122047	ID=Msa1033040-mRNA-1:cds;Parent=Msa1033040-mRNA-1
chr7_1	CDS	68122268	68122354	68122268	ID=Msa1033040-mRNA-1:cds;Parent=Msa1033040-mRNA-1
chr7_1	CDS	68123282	68123362	68123282	ID=Msa1033040-mRNA-1:cds;Parent=Msa1033040-mRNA-1
chr7_1	three_prime_UTR	68123881	68124118	68123881	ID=Msa1033040-mRNA-1:three_prime_utr;Parent=Msa1033040-mRNA-1

Gene Sequence

>Msa1033040

ATGATGTCTGGAACTGGAACATGTTGTGCACTAACCCAAAACCCCCTTCTGTTATCCCGCTCCGTCACCTTTTCTCCTCAACCGCCCACCCCCCTTCAATTTCCAACAACACCCCCCTTTAACCGCTTTCCACCTCCCTTTGCTCAACTGCGTTTCCGTCATTCCCGTCTCTCTGCCATCTCCGATGACGGTTCCGGCGGTACTGGTGGAAATGGCGGCTCTGGAGGATGGAGTTCCGGTGACAATGAAGCTGATGATGGAGGAGGTTCATGGTCATTCTTGTCATGGTACATGACTCTTCTTGCAAAATACCCTGTTCCCGTAAAGGCTTTAACATCTGCAATTCTTAACCTAATTGGAGATTTAATTTGCCAGCTTGTGATAGACAAAGTGCAGACACCGGATTTGAAGAGGACATTCCTCTTTTCGTTTCTCGGTCTTGTGCTAGTTGGTCCAACATTGCATTTCTGGTATTTGTATCTGAGTCAATTGGTTACACTTCCCGGAACATCAGGTGCAATTTTGCGGCTTGTACTTGATCAGTTCTTATTTTCTCCCATATTCCTTGGAGTTTTCTTATCTTCATTGGTGACACTAGAGGGAAGGCCATCACAGGCTGTGCCTAAGCTTAAGCAGGAGTGGTTTTCTGCTGTTCTAGCAAACTGGCAATTATGGATACCTTTTCAATTTCTCAACTTTAGATTTGTTCCGCAACAATTTCAGGTCCTTGCTGCCAATGTTGTTGCTTTGGTGTGGAATGTTATTCTCTCATTTAAAGCACACAAAGAAGTTCTTCCAAAATAG

Protein sequence

>Msa1033040

MMSGTGTCCALTQNPLLLSRSVTFSPQPPTPLQFPTTPPFNRFPPPFAQLRFRHSRLSAISDDGSGGTGGNGGSGGWSSGDNEADDGGGSWSFLSWYMTLLAKYPVPVKALTSAILNLIGDLICQLVIDKVQTPDLKRTFLFSFLGLVLVGPTLHFWYLYLSQLVTLPGTSGAILRLVLDQFLFSPIFLGVFLSSLVTLEGRPSQAVPKLKQEWFSAVLANWQLWIPFQFLNFRFVPQQFQVLAANVVALVWNVILSFKAHKEVLPK*