AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1410390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1410390 MtrunA17_Chr4g0071051 87.943 423 7 3 1 380 1 422 0.0 741
Msa1410390 MtrunA17_Chr3g0135831 34.085 355 164 11 76 378 37 373 5.90e-50 172
Msa1410390 MtrunA17_Chr7g0260331 40.909 242 106 5 76 280 40 281 1.45e-48 168
Msa1410390 MtrunA17_Chr1g0204741 39.184 245 108 6 56 264 11 250 1.33e-47 164
Msa1410390 MtrunA17_Chr5g0410881 42.051 195 73 3 82 236 29 223 1.71e-42 155
Msa1410390 MtrunA17_Chr4g0039891 40.845 213 84 5 84 257 11 220 2.37e-39 146
Msa1410390 MtrunA17_Chr1g0185131 37.500 232 102 5 68 263 7 231 6.97e-38 139
Msa1410390 MtrunA17_Chr8g0379701 36.364 198 90 3 84 245 11 208 1.51e-32 126
Msa1410390 MtrunA17_Chr2g0330821 29.537 281 152 6 14 260 8 276 7.66e-29 115
Msa1410390 MtrunA17_Chr6g0467041 33.054 239 111 6 85 294 22 240 4.57e-28 112
Msa1410390 MtrunA17_Chr8g0378061 35.714 182 87 3 86 238 23 203 1.01e-26 110
Msa1410390 MtrunA17_Chr1g0179321 67.213 61 20 0 84 144 48 108 9.27e-26 100
Msa1410390 MtrunA17_Chr6g0485571 33.684 190 95 4 85 244 11 199 1.22e-24 103
Msa1410390 MtrunA17_Chr8g0392001 37.696 191 79 4 85 235 22 212 2.35e-24 102
Msa1410390 MtrunA17_Chr5g0402291 62.687 67 25 0 82 148 6 72 3.90e-24 100
Msa1410390 MtrunA17_Chr2g0284481 36.216 185 82 4 84 232 14 198 6.18e-24 102
Msa1410390 MtrunA17_Chr3g0134031 55.696 79 35 0 70 148 9 87 8.83e-23 98.6
Msa1410390 MtrunA17_Chr8g0375041 57.971 69 29 0 80 148 4 72 1.16e-22 95.9
Msa1410390 MtrunA17_Chr7g0257331 53.086 81 34 1 72 148 5 85 1.19e-22 95.5
Msa1410390 MtrunA17_Chr5g0397881 59.091 66 27 0 83 148 22 87 5.40e-22 95.9
Msa1410390 MtrunA17_Chr5g0441531 60.606 66 26 0 83 148 23 88 1.30e-21 93.2
Msa1410390 MtrunA17_Chr1g0203601 54.545 66 30 0 83 148 16 81 2.53e-20 90.5
Msa1410390 MtrunA17_Chr4g0023771 59.420 69 27 1 77 144 7 75 3.86e-20 85.1
Msa1410390 MtrunA17_Chr6g0472421 54.545 66 30 0 83 148 31 96 1.18e-19 89.0
Msa1410390 MtrunA17_Chr4g0047421 55.556 72 28 1 83 150 31 102 4.48e-19 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1410390 AT2G26150.1 33.634 333 140 9 76 368 35 326 7.42e-48 166
Msa1410390 AT2G26150.4 33.634 333 140 9 76 368 35 326 7.42e-48 166
Msa1410390 AT5G54070.1 42.857 231 104 7 78 281 63 292 4.07e-47 164
Msa1410390 AT3G22830.1 38.528 231 100 5 76 265 52 281 5.20e-46 162
Msa1410390 AT3G51910.1 42.929 198 93 6 76 254 20 216 1.88e-42 149
Msa1410390 AT5G16820.1 40.816 196 78 3 84 241 26 221 8.81e-41 150
Msa1410390 AT5G16820.2 40.816 196 78 3 84 241 26 221 8.81e-41 150
Msa1410390 AT4G17750.1 40.566 212 74 4 83 247 50 256 1.59e-39 147
Msa1410390 AT1G32330.2 37.333 225 99 4 78 260 30 254 9.40e-38 142
Msa1410390 AT1G32330.1 37.333 225 99 4 78 260 30 254 9.51e-38 142
Msa1410390 AT3G02990.1 40.000 190 77 3 84 236 22 211 3.89e-37 140
Msa1410390 AT3G63350.1 34.274 248 127 4 76 288 19 265 6.15e-37 135
Msa1410390 AT5G03720.2 37.895 190 86 5 84 241 54 243 3.20e-32 125
Msa1410390 AT5G03720.1 37.895 190 86 5 84 241 54 243 3.20e-32 125
Msa1410390 AT5G43840.1 36.702 188 96 4 76 240 10 197 5.08e-32 122
Msa1410390 AT4G13980.1 34.973 183 90 2 86 239 24 206 4.39e-28 115
Msa1410390 AT1G67970.1 36.757 185 83 4 85 235 19 203 5.87e-28 113
Msa1410390 AT3G24520.1 32.584 178 110 3 85 252 17 194 6.59e-24 101
Msa1410390 AT4G36990.1 62.121 66 25 0 83 148 12 77 6.19e-23 97.8
Msa1410390 AT4G11660.1 59.091 66 27 0 83 148 57 122 8.26e-22 96.3
Msa1410390 AT2G41690.1 59.091 66 27 0 83 148 38 103 1.41e-21 93.2
Msa1410390 AT1G46264.1 55.263 76 34 0 73 148 22 97 1.69e-21 94.7
Msa1410390 AT5G62020.1 57.576 66 28 0 83 148 21 86 8.04e-21 92.0
Msa1410390 AT5G45710.3 33.333 177 85 2 84 227 12 188 7.52e-20 90.1
Msa1410390 AT5G45710.1 33.333 177 85 2 84 227 12 188 7.52e-20 90.1
Msa1410390 AT4G18880.1 36.216 185 84 4 77 227 7 191 1.02e-19 90.5
Msa1410390 AT2G26150.3 24.731 279 147 11 111 368 35 271 8.66e-11 62.8
Msa1410390 AT2G26150.2 24.731 279 147 11 111 368 35 271 8.66e-11 62.8

Find 72 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCCAAAAGGCCATTGTTTA+TGG 0.168710 tig0023654:+33745 Msa1410390:CDS
GTATTTAGGAAGAAGAATTT+TGG 0.245282 tig0023654:-31893 None:intergenic
GAAACAATCGGGTCAGTTTC+CGG 0.255207 tig0023654:-31820 None:intergenic
AGATCAGAACATGTTGAAAT+TGG 0.272987 tig0023654:+33604 Msa1410390:CDS
CTCCATAAACAATGGCCTTT+TGG 0.280439 tig0023654:-33747 None:intergenic
TTATTATGCTTAAAGTATTT+AGG 0.297550 tig0023654:-31907 None:intergenic
TAATATCTATCTTGAATTAG+AGG 0.304710 tig0023654:+34132 Msa1410390:CDS
TGTTATGTCAGAGAAGCTTT+TGG 0.350236 tig0023654:+34066 Msa1410390:CDS
GATAAGTAAGCCAACAGATT+GGG 0.381656 tig0023654:+34159 Msa1410390:CDS
CCTTGTGTTCCAAGCAATCT+AGG 0.385680 tig0023654:-33833 None:intergenic
TTCTGTTGTTGATGAAGAAA+TGG 0.389880 tig0023654:+34096 Msa1410390:CDS
TATTCAACTCACAAATGTTC+AGG 0.406470 tig0023654:+33664 Msa1410390:CDS
TAATGTTGATTATAGGAGTC+AGG 0.409936 tig0023654:+33859 Msa1410390:CDS
CAAATGTTCAGGAGCGAGTT+CGG 0.410264 tig0023654:+33675 Msa1410390:CDS
AAACTGACCCGATTGTTTCA+TGG 0.421449 tig0023654:+31824 Msa1410390:CDS
TGGATCTGCTAGTGGATTGG+TGG 0.433958 tig0023654:+34183 Msa1410390:CDS
GGTGGTTACGACGGTGAAAT+CGG 0.435742 tig0023654:+31502 Msa1410390:CDS
TAGCTCTTTACATGACTTGA+GGG 0.437021 tig0023654:+33994 Msa1410390:CDS
GTTTGAAATGGTGGAGGATC+CGG 0.440036 tig0023654:+31801 Msa1410390:CDS
GTTAAAAGACCTAGATTGCT+TGG 0.444562 tig0023654:+33824 Msa1410390:CDS
AAGGTACTAATGTTGATTAT+AGG 0.444857 tig0023654:+33852 Msa1410390:CDS
AAATATGAACACTGGTAGAA+TGG 0.455673 tig0023654:+33934 Msa1410390:CDS
GAAGCACTCCATGAAACAAT+CGG 0.466108 tig0023654:-31832 None:intergenic
TCTCAAGAAGACGTTTGAAA+TGG 0.467110 tig0023654:+31789 Msa1410390:CDS
TGATAAGTAAGCCAACAGAT+TGG 0.468059 tig0023654:+34158 Msa1410390:CDS
TCCTCACCAAAATGGCCAAA+AGG 0.470362 tig0023654:+33732 Msa1410390:CDS
TCTTCCATGGGAGTAGAAAC+AGG 0.475802 tig0023654:-33962 None:intergenic
GACTTACATAGGTGTTGAGC+TGG 0.485810 tig0023654:-31948 None:intergenic
ATTTGTTGAAGAACATAAGA+AGG 0.488953 tig0023654:+33498 Msa1410390:intron
GCACTGTCGTTGAATAACTC+TGG 0.499469 tig0023654:-31559 None:intergenic
GGGTGGATCTGCTAGTGGAT+TGG 0.502731 tig0023654:+34180 Msa1410390:CDS
ATTCAAAAGATTAAGCGAAA+AGG 0.508398 tig0023654:+33776 Msa1410390:CDS
TTACATGACTTGAGGGCTTG+TGG 0.510182 tig0023654:+34001 Msa1410390:CDS
AACAAAATGGCGGTGGCACA+CGG 0.510707 tig0023654:+31481 None:intergenic
ACTTTGCAATCTGAATTGAA+TGG 0.510922 tig0023654:+33899 Msa1410390:CDS
CAAGAAGACGTTTGAAATGG+TGG 0.512314 tig0023654:+31792 Msa1410390:CDS
GTTTCTACTCCCATGGAAGA+TGG 0.512936 tig0023654:+33965 Msa1410390:CDS
CGCAATTCATATCAAAGAAG+AGG 0.515252 tig0023654:+31678 Msa1410390:CDS
GTAGCTCTTTACATGACTTG+AGG 0.518635 tig0023654:+33993 Msa1410390:CDS
TCAAACGTCTTCTTGAGAAA+CGG 0.525722 tig0023654:-31784 None:intergenic
AATTGGAAATTCTGAAGCTA+AGG 0.526195 tig0023654:+33621 Msa1410390:CDS
TTCGGTTGAAACGTCGTCGT+AGG 0.530109 tig0023654:-31599 None:intergenic
GCTACACAGTCCATCTTCCA+TGG 0.535967 tig0023654:-33975 None:intergenic
GGATCTGCTAGTGGATTGGT+GGG 0.540365 tig0023654:+34184 Msa1410390:CDS
ACCACCTGTTTCTACTCCCA+TGG 0.552610 tig0023654:+33958 Msa1410390:CDS
TCCACTTCAGATTCAACGCA+AGG 0.559576 tig0023654:-33569 None:intergenic
CCTAGATTGCTTGGAACACA+AGG 0.567220 tig0023654:+33833 Msa1410390:CDS
ACAAATAAACAAAATGGCGG+TGG 0.567551 tig0023654:+31474 None:intergenic
ATAAGTAAGCCAACAGATTG+GGG 0.574399 tig0023654:+34160 Msa1410390:CDS
AAGCACTCCATGAAACAATC+GGG 0.577813 tig0023654:-31831 None:intergenic
AAGTATAACAAACTGCATCA+AGG 0.578236 tig0023654:+33527 Msa1410390:CDS
AATGTTGATTATAGGAGTCA+GGG 0.582952 tig0023654:+33860 Msa1410390:CDS
TTTCCTGAAAATATGAACAC+TGG 0.585214 tig0023654:+33926 Msa1410390:CDS
GCAGATCCACCCCAATCTGT+TGG 0.588399 tig0023654:-34169 None:intergenic
GTCTTCTTGAGAAACGGTGG+TGG 0.589533 tig0023654:-31778 None:intergenic
ATGGAAGGGTTACATGAGGT+TGG 0.601818 tig0023654:+31754 Msa1410390:intron
TCCTTGCGTTGAATCTGAAG+TGG 0.604555 tig0023654:+33568 Msa1410390:CDS
GAAGAGGTTCTTGAAGAAGA+CGG 0.609483 tig0023654:+31694 Msa1410390:CDS
CTACACAGTCCATCTTCCAT+GGG 0.610941 tig0023654:-33974 None:intergenic
ATTATCTGCTCCATAAACAA+TGG 0.622243 tig0023654:-33755 None:intergenic
GATTGGGGTGGATCTGCTAG+TGG 0.632406 tig0023654:+34175 Msa1410390:CDS
GAAGACGTTTGAAATGGTGG+AGG 0.633963 tig0023654:+31795 Msa1410390:CDS
CATGACTTGAGGGCTTGTGG+TGG 0.643012 tig0023654:+34004 Msa1410390:CDS
GTGGCACACGGTGGTTACGA+CGG 0.645161 tig0023654:+31493 Msa1410390:CDS
AACGTCTTCTTGAGAAACGG+TGG 0.656391 tig0023654:-31781 None:intergenic
AGTAAGCCAACAGATTGGGG+TGG 0.660771 tig0023654:+34163 Msa1410390:CDS
ACCAATGGAAGGGTTACATG+AGG 0.667282 tig0023654:+31750 Msa1410390:intron
GGTTACGACGGTGAAATCGG+TGG 0.688203 tig0023654:+31505 Msa1410390:CDS
AGTTGATGCTAATATAGACA+TGG 0.689403 tig0023654:+33802 Msa1410390:CDS
TATAACAAACTGCATCAAGG+AGG 0.715319 tig0023654:+33530 Msa1410390:CDS
AAAATGGCGGTGGCACACGG+TGG 0.747694 tig0023654:+31484 None:intergenic
TCCATGGGAGTAGAAACAGG+TGG 0.762840 tig0023654:-33959 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATGATTCATATTTAT+AGG + tig0023654:32134-32153 Msa1410390:intron 10.0%
!! TAAAATGATTCATATTTATA+GGG + tig0023654:32135-32154 Msa1410390:intron 10.0%
!!! AAGTTTGTTTAATTAATTTT+TGG + tig0023654:33043-33062 Msa1410390:intron 10.0%
!!! TTATTATGCTTAAAGTATTT+AGG - tig0023654:31910-31929 None:intergenic 15.0%
!!! TTTTTTCATGTTTTTTTACA+TGG - tig0023654:32436-32455 None:intergenic 15.0%
!!! GTTAATATTTGGAATATTAT+CGG + tig0023654:32969-32988 Msa1410390:intron 15.0%
!!! AAGCAAAAAAAATTTTTTAG+CGG + tig0023654:33368-33387 Msa1410390:intron 15.0%
!!! AGAATTTTTTTGACTTACAT+AGG - tig0023654:31962-31981 None:intergenic 20.0%
!!! TGTACAATTTAAATCAGTTT+TGG + tig0023654:32024-32043 Msa1410390:intron 20.0%
!! AAATCCAGAATAAATTCAAA+TGG - tig0023654:32489-32508 None:intergenic 20.0%
!!! GCAAAAAACAAAATAGATTT+TGG - tig0023654:32568-32587 None:intergenic 20.0%
!! ATATTCCAAATATTAACATG+CGG - tig0023654:32966-32985 None:intergenic 20.0%
!! TAATATCTATCTTGAATTAG+AGG + tig0023654:34132-34151 Msa1410390:CDS 20.0%
!!! ATAACTCTGGTTTTATTGAT+GGG - tig0023654:31549-31568 None:intergenic 25.0%
!!! AATAACTCTGGTTTTATTGA+TGG - tig0023654:31550-31569 None:intergenic 25.0%
!!! TAGTACTGATTCTTTTCTTT+CGG - tig0023654:31620-31639 None:intergenic 25.0%
!! GTATTTAGGAAGAAGAATTT+TGG - tig0023654:31896-31915 None:intergenic 25.0%
!!! TTACATGAACTCACTTTTAT+AGG + tig0023654:32340-32359 Msa1410390:intron 25.0%
! ACATTAAATTCGAACTTCAT+TGG + tig0023654:32381-32400 Msa1410390:intron 25.0%
!!! TTTTTTGCAACCACAAAAAT+AGG + tig0023654:32580-32599 Msa1410390:intron 25.0%
! TAAATCTCATATTAACACAG+GGG - tig0023654:32835-32854 None:intergenic 25.0%
! GTAAATCTCATATTAACACA+GGG - tig0023654:32836-32855 None:intergenic 25.0%
! TGTAAATCTCATATTAACAC+AGG - tig0023654:32837-32856 None:intergenic 25.0%
! TATTCCAAATATTAACATGC+GGG - tig0023654:32965-32984 None:intergenic 25.0%
! CATGGAAAAATAAATATGAC+AGG + tig0023654:33018-33037 Msa1410390:intron 25.0%
!! CTATTTCTTAAACGTAACTT+GGG - tig0023654:33074-33093 None:intergenic 25.0%
!! TCTATTTCTTAAACGTAACT+TGG - tig0023654:33075-33094 None:intergenic 25.0%
! GAAGAAAAAAGAAAAGAAAG+AGG - tig0023654:33242-33261 None:intergenic 25.0%
!! ATTTGTTGAAGAACATAAGA+AGG + tig0023654:33498-33517 Msa1410390:intron 25.0%
! ATTCAAAAGATTAAGCGAAA+AGG + tig0023654:33776-33795 Msa1410390:CDS 25.0%
!! AAGGTACTAATGTTGATTAT+AGG + tig0023654:33852-33871 Msa1410390:CDS 25.0%
!!! TCGTGATAGTTTTGTTGTTT+GGG + tig0023654:31855-31874 Msa1410390:CDS 30.0%
!! TTAAATCAGTTTTGGCATCA+CGG + tig0023654:32032-32051 Msa1410390:intron 30.0%
AAATCAACTCAATGCATGTT+TGG - tig0023654:32079-32098 None:intergenic 30.0%
TTCGCCATTTGAATTTATTC+TGG + tig0023654:32482-32501 Msa1410390:intron 30.0%
GGTAATTTCCCAGAAATAAT+GGG - tig0023654:32806-32825 None:intergenic 30.0%
TGGTAATTTCCCAGAAATAA+TGG - tig0023654:32807-32826 None:intergenic 30.0%
!!! ATATTAACACAGGGGTATTT+TGG - tig0023654:32827-32846 None:intergenic 30.0%
ATATCCCGCATGTTAATATT+TGG + tig0023654:32958-32977 Msa1410390:intron 30.0%
! GTTTAAGACAAAGAAGAAAC+TGG + tig0023654:33103-33122 Msa1410390:intron 30.0%
AAGTATAACAAACTGCATCA+AGG + tig0023654:33527-33546 Msa1410390:CDS 30.0%
AGATCAGAACATGTTGAAAT+TGG + tig0023654:33604-33623 Msa1410390:CDS 30.0%
!! AATTGGAAATTCTGAAGCTA+AGG + tig0023654:33621-33640 Msa1410390:CDS 30.0%
TATTCAACTCACAAATGTTC+AGG + tig0023654:33664-33683 Msa1410390:CDS 30.0%
ATTATCTGCTCCATAAACAA+TGG - tig0023654:33758-33777 None:intergenic 30.0%
! AGTTGATGCTAATATAGACA+TGG + tig0023654:33802-33821 Msa1410390:CDS 30.0%
! TAATGTTGATTATAGGAGTC+AGG + tig0023654:33859-33878 Msa1410390:CDS 30.0%
! AATGTTGATTATAGGAGTCA+GGG + tig0023654:33860-33879 Msa1410390:CDS 30.0%
ACTTTGCAATCTGAATTGAA+TGG + tig0023654:33899-33918 Msa1410390:CDS 30.0%
TTTCCTGAAAATATGAACAC+TGG + tig0023654:33926-33945 Msa1410390:CDS 30.0%
AAATATGAACACTGGTAGAA+TGG + tig0023654:33934-33953 Msa1410390:CDS 30.0%
! TTCTGTTGTTGATGAAGAAA+TGG + tig0023654:34096-34115 Msa1410390:CDS 30.0%
!!! CTGGTTTTATTGATGGGATT+AGG - tig0023654:31543-31562 None:intergenic 35.0%
ACCTTCTTCTTCTTCTTCTT+CGG - tig0023654:31644-31663 None:intergenic 35.0%
CGCAATTCATATCAAAGAAG+AGG + tig0023654:31678-31697 Msa1410390:CDS 35.0%
TCAAACGTCTTCTTGAGAAA+CGG - tig0023654:31787-31806 None:intergenic 35.0%
TCTCAAGAAGACGTTTGAAA+TGG + tig0023654:31789-31808 Msa1410390:CDS 35.0%
!!! CTCGTGATAGTTTTGTTGTT+TGG + tig0023654:31854-31873 Msa1410390:CDS 35.0%
AATGCATGTTTGGTATCATG+TGG - tig0023654:32069-32088 None:intergenic 35.0%
TATAGGGAGCTATGAATGTT+TGG + tig0023654:32151-32170 Msa1410390:intron 35.0%
!! ATGTTTGGTTCCTCTTTTAG+AGG + tig0023654:32166-32185 Msa1410390:intron 35.0%
! TTCAACATCTCCTCTAAAAG+AGG - tig0023654:32179-32198 None:intergenic 35.0%
TTTGCAACCACAAAAATAGG+TGG + tig0023654:32583-32602 Msa1410390:intron 35.0%
!!! TTAGTCTCCACCTATTTTTG+TGG - tig0023654:32593-32612 None:intergenic 35.0%
TTTATGAATCTGTCACATGC+AGG + tig0023654:32737-32756 Msa1410390:intron 35.0%
TTATGAATCTGTCACATGCA+GGG + tig0023654:32738-32757 Msa1410390:intron 35.0%
!! ATTTCCCAGAAATAATGGGT+AGG - tig0023654:32802-32821 None:intergenic 35.0%
AAAGGGTTTCAGAAAAAGGT+GGG - tig0023654:32870-32889 None:intergenic 35.0%
GGTGACATATTGTAGAACAA+AGG + tig0023654:32907-32926 Msa1410390:intron 35.0%
GACATATTGTAGAACAAAGG+TGG + tig0023654:32910-32929 Msa1410390:intron 35.0%
TATCGGATTAACGTGTTAAG+AGG + tig0023654:32986-33005 Msa1410390:intron 35.0%
GTTAAGAGGACTAATGTTCA+TGG + tig0023654:33000-33019 Msa1410390:intron 35.0%
! TGCAAGACACTTTTACTGTT+TGG + tig0023654:33176-33195 Msa1410390:intron 35.0%
AACGAATTGTGAAGGTTTGA+GGG - tig0023654:33340-33359 None:intergenic 35.0%
!!! GAGCCAGACAAATTTTTTTG+GGG - tig0023654:33397-33416 None:intergenic 35.0%
!!! GGAGCCAGACAAATTTTTTT+GGG - tig0023654:33398-33417 None:intergenic 35.0%
CAAATGAAGGATTTCAAGCA+GGG + tig0023654:33468-33487 Msa1410390:intron 35.0%
TATAACAAACTGCATCAAGG+AGG + tig0023654:33530-33549 Msa1410390:CDS 35.0%
!!! GCTATTTTTCCTCACCAAAA+TGG + tig0023654:33724-33743 Msa1410390:CDS 35.0%
GTTAAAAGACCTAGATTGCT+TGG + tig0023654:33824-33843 Msa1410390:CDS 35.0%
! CTACCAGTGTTCATATTTTC+AGG - tig0023654:33932-33951 None:intergenic 35.0%
TAGCTCTTTACATGACTTGA+GGG + tig0023654:33994-34013 Msa1410390:CDS 35.0%
! TGTTATGTCAGAGAAGCTTT+TGG + tig0023654:34066-34085 Msa1410390:CDS 35.0%
! GTTATGTCAGAGAAGCTTTT+GGG + tig0023654:34067-34086 Msa1410390:CDS 35.0%
! TTATGTCAGAGAAGCTTTTG+GGG + tig0023654:34068-34087 Msa1410390:CDS 35.0%
TGATAAGTAAGCCAACAGAT+TGG + tig0023654:34158-34177 Msa1410390:CDS 35.0%
GATAAGTAAGCCAACAGATT+GGG + tig0023654:34159-34178 Msa1410390:CDS 35.0%
ATAAGTAAGCCAACAGATTG+GGG + tig0023654:34160-34179 Msa1410390:CDS 35.0%
ACCGAAGAAGAAGAAGAAGA+AGG + tig0023654:31640-31659 Msa1410390:CDS 40.0%
GAAGAGGTTCTTGAAGAAGA+CGG + tig0023654:31694-31713 Msa1410390:CDS 40.0%
ACTCAGGTTTCCTAAACCAA+TGG + tig0023654:31735-31754 Msa1410390:intron 40.0%
AGGTTTCCTAAACCAATGGA+AGG + tig0023654:31739-31758 Msa1410390:intron 40.0%
GGTTTCCTAAACCAATGGAA+GGG + tig0023654:31740-31759 Msa1410390:intron 40.0%
!! TGTAACCCTTCCATTGGTTT+AGG - tig0023654:31748-31767 None:intergenic 40.0%
! CAAGAAGACGTTTGAAATGG+TGG + tig0023654:31792-31811 Msa1410390:CDS 40.0%
AAACTGACCCGATTGTTTCA+TGG + tig0023654:31824-31843 Msa1410390:CDS 40.0%
AAGCACTCCATGAAACAATC+GGG - tig0023654:31834-31853 None:intergenic 40.0%
! GAAGCACTCCATGAAACAAT+CGG - tig0023654:31835-31854 None:intergenic 40.0%
GGTGGAGACTAAAAATCAAG+AGG + tig0023654:32601-32620 Msa1410390:intron 40.0%
! ATGGCCTACCCATTATTTCT+GGG + tig0023654:32795-32814 Msa1410390:intron 40.0%
GAAAGGGTTTCAGAAAAAGG+TGG - tig0023654:32871-32890 None:intergenic 40.0%
GAGGAAAGGGTTTCAGAAAA+AGG - tig0023654:32874-32893 None:intergenic 40.0%
!! CGGGATATTACAGTGTTGAT+TGG - tig0023654:32946-32965 None:intergenic 40.0%
AAACTGGATAGCAGTAGTCA+CGG + tig0023654:33119-33138 Msa1410390:intron 40.0%
GAACGAATTGTGAAGGTTTG+AGG - tig0023654:33341-33360 None:intergenic 40.0%
ACCTTCACAATTCGTTCAAG+AGG + tig0023654:33344-33363 Msa1410390:intron 40.0%
ACCTCTTGAACGAATTGTGA+AGG - tig0023654:33348-33367 None:intergenic 40.0%
!!! CCAGACAAATTTTTTTGGGG+TGG - tig0023654:33394-33413 None:intergenic 40.0%
CCACCCCAAAAAAATTTGTC+TGG + tig0023654:33391-33410 Msa1410390:intron 40.0%
!!! CGGAGCCAGACAAATTTTTT+TGG - tig0023654:33399-33418 None:intergenic 40.0%
CTTCATTTGCAAACTCCCAA+CGG - tig0023654:33457-33476 None:intergenic 40.0%
GCAAATGAAGGATTTCAAGC+AGG + tig0023654:33467-33486 Msa1410390:intron 40.0%
! CTCCATAAACAATGGCCTTT+TGG - tig0023654:33750-33769 None:intergenic 40.0%
GTAGCTCTTTACATGACTTG+AGG + tig0023654:33993-34012 Msa1410390:CDS 40.0%
! TATGTCAGAGAAGCTTTTGG+GGG + tig0023654:34069-34088 Msa1410390:CDS 40.0%
GCACTGTCGTTGAATAACTC+TGG - tig0023654:31562-31581 None:intergenic 45.0%
CTAACGCTTCATCTTCACTC+AGG + tig0023654:31719-31738 Msa1410390:intron 45.0%
ACCAATGGAAGGGTTACATG+AGG + tig0023654:31750-31769 Msa1410390:intron 45.0%
ACCTCATGTAACCCTTCCAT+TGG - tig0023654:31754-31773 None:intergenic 45.0%
ATGGAAGGGTTACATGAGGT+TGG + tig0023654:31754-31773 Msa1410390:intron 45.0%
AACGTCTTCTTGAGAAACGG+TGG - tig0023654:31784-31803 None:intergenic 45.0%
! GAAGACGTTTGAAATGGTGG+AGG + tig0023654:31795-31814 Msa1410390:CDS 45.0%
! GTTTGAAATGGTGGAGGATC+CGG + tig0023654:31801-31820 Msa1410390:CDS 45.0%
GAAACAATCGGGTCAGTTTC+CGG - tig0023654:31823-31842 None:intergenic 45.0%
!! GACTTACATAGGTGTTGAGC+TGG - tig0023654:31951-31970 None:intergenic 45.0%
!! CAGAAATAATGGGTAGGCCA+TGG - tig0023654:32796-32815 None:intergenic 45.0%
CATGGCCTACCCATTATTTC+TGG + tig0023654:32794-32813 Msa1410390:intron 45.0%
GGTTTCAGAAAAAGGTGGGA+TGG - tig0023654:32866-32885 None:intergenic 45.0%
! TCTGAAACCCTTTCCTCTCT+TGG + tig0023654:32877-32896 Msa1410390:intron 45.0%
AACTGGATAGCAGTAGTCAC+GGG + tig0023654:33120-33139 Msa1410390:intron 45.0%
TGAAGGTTTGAGGGAAAGCT+CGG - tig0023654:33331-33350 None:intergenic 45.0%
! GAAGGTTGATTCAGACCGTT+GGG + tig0023654:33439-33458 Msa1410390:intron 45.0%
CGTTGGGAGTTTGCAAATGA+AGG + tig0023654:33455-33474 Msa1410390:intron 45.0%
TCCTTGCGTTGAATCTGAAG+TGG + tig0023654:33568-33587 Msa1410390:CDS 45.0%
TCCACTTCAGATTCAACGCA+AGG - tig0023654:33572-33591 None:intergenic 45.0%
CAAATGTTCAGGAGCGAGTT+CGG + tig0023654:33675-33694 Msa1410390:CDS 45.0%
TCCTCACCAAAATGGCCAAA+AGG + tig0023654:33732-33751 Msa1410390:CDS 45.0%
! CAATGGCCTTTTGGCCATTT+TGG - tig0023654:33741-33760 None:intergenic 45.0%
GGCCAAAAGGCCATTGTTTA+TGG + tig0023654:33745-33764 Msa1410390:CDS 45.0%
CCTTGTGTTCCAAGCAATCT+AGG - tig0023654:33836-33855 None:intergenic 45.0%
CCTAGATTGCTTGGAACACA+AGG + tig0023654:33833-33852 Msa1410390:CDS 45.0%
TCTTCCATGGGAGTAGAAAC+AGG - tig0023654:33965-33984 None:intergenic 45.0%
GTTTCTACTCCCATGGAAGA+TGG + tig0023654:33965-33984 Msa1410390:CDS 45.0%
CTACACAGTCCATCTTCCAT+GGG - tig0023654:33977-33996 None:intergenic 45.0%
TTACATGACTTGAGGGCTTG+TGG + tig0023654:34001-34020 Msa1410390:CDS 45.0%
GGTGGTTACGACGGTGAAAT+CGG + tig0023654:31502-31521 Msa1410390:CDS 50.0%
TTCGGTTGAAACGTCGTCGT+AGG - tig0023654:31602-31621 None:intergenic 50.0%
GTCTTCTTGAGAAACGGTGG+TGG - tig0023654:31781-31800 None:intergenic 50.0%
CAGAAAAAGGTGGGATGGCA+TGG - tig0023654:32861-32880 None:intergenic 50.0%
ACCACAGCCAAGAGAGGAAA+GGG - tig0023654:32887-32906 None:intergenic 50.0%
AGAGGACGCGAGAGATAGAA+AGG - tig0023654:33224-33243 None:intergenic 50.0%
! AAGCTCGGTGGAATGGAGAT+GGG - tig0023654:33316-33335 None:intergenic 50.0%
! AAAGCTCGGTGGAATGGAGA+TGG - tig0023654:33317-33336 None:intergenic 50.0%
TTCCTAAACCCCTGCATCAG+TGG - tig0023654:33422-33441 None:intergenic 50.0%
ACTGATGCAGGGGTTTAGGA+AGG + tig0023654:33421-33440 Msa1410390:intron 50.0%
! GGAAGGTTGATTCAGACCGT+TGG + tig0023654:33438-33457 Msa1410390:intron 50.0%
!! GCCTTTTGGCCATTTTGGTG+AGG - tig0023654:33736-33755 None:intergenic 50.0%
!! ACCACCTGTTTCTACTCCCA+TGG + tig0023654:33958-33977 Msa1410390:CDS 50.0%
TCCATGGGAGTAGAAACAGG+TGG - tig0023654:33962-33981 None:intergenic 50.0%
GCTACACAGTCCATCTTCCA+TGG - tig0023654:33978-33997 None:intergenic 50.0%
AGTAAGCCAACAGATTGGGG+TGG + tig0023654:34163-34182 Msa1410390:CDS 50.0%
!! TGGATCTGCTAGTGGATTGG+TGG + tig0023654:34183-34202 Msa1410390:CDS 50.0%
!! GGATCTGCTAGTGGATTGGT+GGG + tig0023654:34184-34203 Msa1410390:CDS 50.0%
GGTTACGACGGTGAAATCGG+TGG + tig0023654:31505-31524 Msa1410390:CDS 55.0%
ATCTGTCACATGCAGGGCAG+TGG + tig0023654:32744-32763 Msa1410390:intron 55.0%
ACCCTTTCCTCTCTTGGCTG+TGG + tig0023654:32883-32902 Msa1410390:intron 55.0%
CACCACAGCCAAGAGAGGAA+AGG - tig0023654:32888-32907 None:intergenic 55.0%
CTTTCCTCTCTTGGCTGTGG+TGG + tig0023654:32886-32905 Msa1410390:intron 55.0%
CGTGAGAGAGTAGAGGAGGA+AGG - tig0023654:33287-33306 None:intergenic 55.0%
! GAAGAGGCGTGAGAGAGTAG+AGG - tig0023654:33294-33313 None:intergenic 55.0%
GGTGGAATGGAGATGGGAAG+AGG - tig0023654:33310-33329 None:intergenic 55.0%
! TGAGGGAAAGCTCGGTGGAA+TGG - tig0023654:33323-33342 None:intergenic 55.0%
AGGTTTGAGGGAAAGCTCGG+TGG - tig0023654:33328-33347 None:intergenic 55.0%
CTAAACCCCTGCATCAGTGG+CGG - tig0023654:33419-33438 None:intergenic 55.0%
CATGACTTGAGGGCTTGTGG+TGG + tig0023654:34004-34023 Msa1410390:CDS 55.0%
GCAGATCCACCCCAATCTGT+TGG - tig0023654:34172-34191 None:intergenic 55.0%
GATTGGGGTGGATCTGCTAG+TGG + tig0023654:34175-34194 Msa1410390:CDS 55.0%
! GGGTGGATCTGCTAGTGGAT+TGG + tig0023654:34180-34199 Msa1410390:CDS 55.0%
GTGGCACACGGTGGTTACGA+CGG + tig0023654:31493-31512 Msa1410390:CDS 60.0%
TGTCACATGCAGGGCAGTGG+CGG + tig0023654:32747-32766 Msa1410390:intron 60.0%
AGCTACACCAGGACTGGGGT+AGG + tig0023654:32770-32789 Msa1410390:intron 60.0%
GTCACCACCACAGCCAAGAG+AGG - tig0023654:32893-32912 None:intergenic 60.0%
GAGGCGTGAGAGAGTAGAGG+AGG - tig0023654:33291-33310 None:intergenic 60.0%
CGCCACTGATGCAGGGGTTT+AGG + tig0023654:33417-33436 Msa1410390:intron 60.0%
TGGCGGAGCTACACCAGGAC+TGG + tig0023654:32764-32783 Msa1410390:intron 65.0%
GGCGGAGCTACACCAGGACT+GGG + tig0023654:32765-32784 Msa1410390:intron 65.0%
GCGGAGCTACACCAGGACTG+GGG + tig0023654:32766-32785 Msa1410390:intron 65.0%
ACCAGGACTGGGGTAGGCCA+TGG + tig0023654:32776-32795 Msa1410390:intron 65.0%
! TCTGGCTCCGCCACTGATGC+AGG + tig0023654:33409-33428 Msa1410390:intron 65.0%
CTGGCTCCGCCACTGATGCA+GGG + tig0023654:33410-33429 Msa1410390:intron 65.0%
TGGCTCCGCCACTGATGCAG+GGG + tig0023654:33411-33430 Msa1410390:intron 65.0%
! GGCAGTGGCGGAGCTACACC+AGG + tig0023654:32759-32778 Msa1410390:intron 70.0%
GCCATGGCCTACCCCAGTCC+TGG - tig0023654:32780-32799 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0023654 gene 31487 34219 31487 ID=Msa1410390;Name=Msa1410390
tig0023654 mRNA 31487 34219 31487 ID=Msa1410390-mRNA-1;Parent=Msa1410390;Name=Msa1410390-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0|0|3|0|380
tig0023654 exon 31487 31715 31487 ID=Msa1410390-mRNA-1:exon:26575;Parent=Msa1410390-mRNA-1
tig0023654 exon 31761 31963 31761 ID=Msa1410390-mRNA-1:exon:26576;Parent=Msa1410390-mRNA-1
tig0023654 exon 33509 34219 33509 ID=Msa1410390-mRNA-1:exon:26577;Parent=Msa1410390-mRNA-1
tig0023654 CDS 31487 31715 31487 ID=Msa1410390-mRNA-1:cds;Parent=Msa1410390-mRNA-1
tig0023654 CDS 31761 31963 31761 ID=Msa1410390-mRNA-1:cds;Parent=Msa1410390-mRNA-1
tig0023654 CDS 33509 34219 33509 ID=Msa1410390-mRNA-1:cds;Parent=Msa1410390-mRNA-1
Gene Sequence

>Msa1410390

ATGGCGGTGGCACACGGTGGTTACGACGGTGAAATCGGTGGCTACAATTCTCGCCTAATCCCATCAATAAAACCAGAGTTATTCAACGACAGTGCAAATTCAAGCTCTTACACCTACGACGACGTTTCAACCGAAAGAAAAGAATCAGTACTAACCGAAGAAGAAGAAGAAGAAGGTGCTACAGCTTCTCACGCAATTCATATCAAAGAAGAGGTTCTTGAAGAAGACGGGTTACATGAGGTTGGTCCACCACCGTTTCTCAAGAAGACGTTTGAAATGGTGGAGGATCCGGAAACTGACCCGATTGTTTCATGGAGTGCTTCTCGTGATAGTTTTGTTGTTTGGGATTCTCATGAATTCTCCAAAATTCTTCTTCCTAAATACTTTAAGCATAATAATTTTTCTAGCTTCATTCGCCAGCTCAACACCTATAACATAAGAAGGAGAAGCAAGTATAACAAACTGCATCAAGGAGGATTCAATTTGATGAATCCTTGCGTTGAATCTGAAGTGGAGAAACTGAAAAAAGATCAGAACATGTTGAAATTGGAAATTCTGAAGCTAAGGCAACAACAAGAGAATTCAAATATTCAACTCACAAATGTTCAGGAGCGAGTTCGGCGAGCAGAATCGAAGCAATATCAGATGCTATTTTTCCTCACCAAAATGGCCAAAAGGCCATTGTTTATGGAGCAGATAATTCAAAAGATTAAGCGAAAAGGAGAAGTTGATGCTAATATAGACATGGTTAAAAGACCTAGATTGCTTGGAACACAAGGTACTAATGTTGATTATAGGAGTCAGGGTCGTGAACAATTTGCTACTTTGCAATCTGAATTGAATGGACTTTTTCCTGAAAATATGAACACTGGTAGAATGGAACCACCTGTTTCTACTCCCATGGAAGATGGACTGTGTAGCTCTTTACATGACTTGAGGGCTTGTGGTGGTTCTAGACAAAGTGTTCAAGATGCTACATCTGCATATCATGTTATGTCAGAGAAGCTTTTGGGGGAAAATTCTGTTGTTGATGAAGAAATGGATGTGAATGACTCTAATATCTATCTTGAATTAGAGGATTTGATAAGTAAGCCAACAGATTGGGGTGGATCTGCTAGTGGATTGGTGGGACAAACTAGTTGA

Protein sequence

>Msa1410390

MAVAHGGYDGEIGGYNSRLIPSIKPELFNDSANSSSYTYDDVSTERKESVLTEEEEEEGATASHAIHIKEEVLEEDGLHEVGPPPFLKKTFEMVEDPETDPIVSWSASRDSFVVWDSHEFSKILLPKYFKHNNFSSFIRQLNTYNIRRRSKYNKLHQGGFNLMNPCVESEVEKLKKDQNMLKLEILKLRQQQENSNIQLTNVQERVRRAESKQYQMLFFLTKMAKRPLFMEQIIQKIKRKGEVDANIDMVKRPRLLGTQGTNVDYRSQGREQFATLQSELNGLFPENMNTGRMEPPVSTPMEDGLCSSLHDLRACGGSRQSVQDATSAYHVMSEKLLGENSVVDEEMDVNDSNIYLELEDLISKPTDWGGSASGLVGQTS*