AlfalfaGEDB | Msa1033330

M. sativa cultivar zhongmu-4 / Msa1033330

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033330	ABD33047.1	83.582	134	4	1	6	121	1	134	1.41e-63	217
Msa1033330	ABD33047.1	92.958	142	10	0	276	417	173	314	3.33e-89	283

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033330	sp\|Q6NLB1\|FB118_ARATH	48.062	129	67	0	284	412	236	364	2.00e-35	137

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033330	Q2HSX6	83.582	134	4	1	6	121	1	134	6.72e-64	217
Msa1033330	Q2HSX6	92.958	142	10	0	276	417	173	314	1.59e-89	283

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1033330	TF	FAR1

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0070230	Msa1033330	0.856449	3.193621e-62	-8.615850e-47
Msa0160900	Msa1033330	0.882085	1.400348e-70	-8.615850e-47
Msa0270480	Msa1033330	0.803102	4.090999e-49	-8.615850e-47
Msa0309040	Msa1033330	0.873276	1.666887e-67	-8.615850e-47
Msa0747180	Msa1033330	0.841068	5.943919e-58	-8.615850e-47

Showing 1 to 5 of 5 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033330	MtrunA17_Chr7g0256161	81.875	160	11	1	276	417	173	332	7.61e-88	270
Msa1033330	MtrunA17_Chr7g0256161	83.582	134	4	1	6	121	1	134	1.44e-67	218
Msa1033330	MtrunA17_Chr5g0401121	86.207	116	13	1	142	254	23	138	1.09e-64	204
Msa1033330	MtrunA17_Chr3g0082121	65.833	120	34	2	143	255	7	126	3.15e-43	160
Msa1033330	MtrunA17_Chr7g0256121	52.239	134	63	1	279	412	255	387	4.39e-43	155
Msa1033330	MtrunA17_Chr5g0441461	48.837	129	66	0	284	412	264	392	2.90e-37	139
Msa1033330	MtrunA17_Chr3g0094081	45.600	125	68	0	288	412	244	368	9.98e-34	129
Msa1033330	MtrunA17_Chr7g0256131	49.265	136	66	3	278	413	175	307	8.11e-31	120
Msa1033330	MtrunA17_Chr7g0256131	39.695	131	56	3	9	121	8	133	6.77e-19	87.0
Msa1033330	MtrunA17_Chr6g0458391	37.195	164	75	6	97	253	164	306	1.06e-19	91.7

Showing 1 to 10 of 16 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033330	AT2G26850.1	48.062	129	67	0	284	412	236	364	2.04e-36	137
Msa1033330	AT2G32560.1	48.031	127	65	1	284	410	237	362	4.60e-35	133
Msa1033330	AT2G41170.1	42.963	135	76	1	282	416	235	368	1.92e-31	124
Msa1033330	AT2G41170.2	34.524	168	76	2	282	416	235	401	1.53e-25	107
Msa1033330	AT2G32560.2	44.595	74	41	0	284	357	237	310	5.22e-18	85.1
Msa1033330	AT3G59470.3	46.753	77	37	2	175	248	70	145	8.36e-12	65.5
Msa1033330	AT3G59470.1	46.753	77	37	2	175	248	70	145	8.36e-12	65.5
Msa1033330	AT3G59470.2	46.753	77	37	2	175	248	82	157	1.01e-11	65.5

Showing 1 to 8 of 8 entries

Previous1Next

Find 92 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCGATCGGAAACTAT+GGG	0.516302	7_1:+68383464	Msa1033330:CDS
AAAATTTCTCACCAGAATTT+TGG	0.201635	7_1:-68383274	None:intergenic
AAAATTTGTGTGCTCCAAAG+AGG	0.589431	7_1:+68380542	Msa1033330:CDS
AAACTGATAGCTTTCAGGCA+AGG	0.599110	7_1:+68379519	Msa1033330:CDS
AAATTCAGATGAAGCAAAAG+TGG	0.535525	7_1:+68378857	Msa1033330:intron
AAATTCGATCGGAAACTATG+GGG	0.646216	7_1:+68383465	Msa1033330:CDS
AAATTTGTGTGCTCCAAAGA+GGG	0.614397	7_1:+68380543	Msa1033330:CDS
AACAGGATGTTTAGCACGTA+TGG	0.468473	7_1:+68380623	Msa1033330:CDS
AATATTCAGAATGGATCACT+TGG	0.583761	7_1:+68378976	Msa1033330:CDS
AATGAGTATAGTAGGAAATG+TGG	0.549866	7_1:+68380459	Msa1033330:intron

Showing 1 to 10 of 92 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTCGAGAATTCCATCTAAAA+TGG	-	chr7_1:68378755-68378774	None:intergenic	30.0%
AAATTCAGATGAAGCAAAAG+TGG	+	chr7_1:68378857-68378876	Msa1033330:intron	30.0%
AATTCAGATGAAGCAAAAGT+GGG	+	chr7_1:68378858-68378877	Msa1033330:intron	30.0%
AATATTCAGAATGGATCACT+TGG	+	chr7_1:68378976-68378995	Msa1033330:CDS	30.0%
GTTTCCAGCTCAATTATTTA+GGG	+	chr7_1:68379131-68379150	Msa1033330:intron	30.0%
TTTACCCTAAATAATTGAGC+TGG	-	chr7_1:68379138-68379157	None:intergenic	30.0%
GGTTTAGCAATTTGATTACA+TGG	+	chr7_1:68379671-68379690	Msa1033330:intron	30.0%
TTAGCAATTTGATTACATGG+AGG	+	chr7_1:68379674-68379693	Msa1033330:intron	30.0%
TTACATGGAGGTGATTAAAA+TGG	+	chr7_1:68379686-68379705	Msa1033330:intron	30.0%
TACATGGAGGTGATTAAAAT+GGG	+	chr7_1:68379687-68379706	Msa1033330:intron	30.0%

Showing 1 to 10 of 340 entries

Previous1 2 3 4 5…34Next

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	68378685	68383561	68378685	ID=Msa1033330;Name=Msa1033330
chr7_1	mRNA	68378685	68383561	68378685	ID=Msa1033330-mRNA-1;Parent=Msa1033330;Name=Msa1033330-mRNA-1;_AED=0.30;_eAED=0.35;_QI=0\|0\|0\|1\|0.25\|0.33\|9\|0\|419
chr7_1	exon	68378685	68378810	68378685	ID=Msa1033330-mRNA-1:exon:15996;Parent=Msa1033330-mRNA-1
chr7_1	exon	68378865	68379100	68378865	ID=Msa1033330-mRNA-1:exon:15997;Parent=Msa1033330-mRNA-1
chr7_1	exon	68379479	68379540	68379479	ID=Msa1033330-mRNA-1:exon:15998;Parent=Msa1033330-mRNA-1
chr7_1	exon	68380310	68380463	68380310	ID=Msa1033330-mRNA-1:exon:15999;Parent=Msa1033330-mRNA-1
chr7_1	exon	68380473	68380644	68380473	ID=Msa1033330-mRNA-1:exon:16000;Parent=Msa1033330-mRNA-1
chr7_1	exon	68381252	68381325	68381252	ID=Msa1033330-mRNA-1:exon:16001;Parent=Msa1033330-mRNA-1
chr7_1	exon	68382921	68383093	68382921	ID=Msa1033330-mRNA-1:exon:16002;Parent=Msa1033330-mRNA-1
chr7_1	exon	68383210	68383284	68383210	ID=Msa1033330-mRNA-1:exon:16003;Parent=Msa1033330-mRNA-1
chr7_1	exon	68383374	68383561	68383374	ID=Msa1033330-mRNA-1:exon:16004;Parent=Msa1033330-mRNA-1
chr7_1	CDS	68378685	68378810	68378685	ID=Msa1033330-mRNA-1:cds;Parent=Msa1033330-mRNA-1
chr7_1	CDS	68378865	68379100	68378865	ID=Msa1033330-mRNA-1:cds;Parent=Msa1033330-mRNA-1
chr7_1	CDS	68379479	68379540	68379479	ID=Msa1033330-mRNA-1:cds;Parent=Msa1033330-mRNA-1
chr7_1	CDS	68380310	68380463	68380310	ID=Msa1033330-mRNA-1:cds;Parent=Msa1033330-mRNA-1
chr7_1	CDS	68380473	68380644	68380473	ID=Msa1033330-mRNA-1:cds;Parent=Msa1033330-mRNA-1
chr7_1	CDS	68381252	68381325	68381252	ID=Msa1033330-mRNA-1:cds;Parent=Msa1033330-mRNA-1
chr7_1	CDS	68382921	68383093	68382921	ID=Msa1033330-mRNA-1:cds;Parent=Msa1033330-mRNA-1
chr7_1	CDS	68383210	68383284	68383210	ID=Msa1033330-mRNA-1:cds;Parent=Msa1033330-mRNA-1
chr7_1	CDS	68383374	68383561	68383374	ID=Msa1033330-mRNA-1:cds;Parent=Msa1033330-mRNA-1

Gene Sequence

>Msa1033330

ATGAAGGAAACTAGCATGAAGAAAATTGCAAATAGTGCTAGCATCTCTCTTTTGAATTTTCCCGAATCCATTTTAGATGGAATTCTCGAACGCCTTTCACCAATAGAACTCATCAAAATGTCTGAAATGAAGCAAAAGTGGGGAAGAGTCATTGGTGATGTTGCCCTAAAGGAGTGGCAATGGCATGTAACATCTATAACAGCTGAGGAAGGGAGTGTCTTGAATCAACAAATCAATAATATTCAGAATGGATCACTTGGTTCTTTTAGTGGTTCTTGGCCTATGCTATGTCTTGGATCATATCTGGAAGAGTGCACACATCTTAAGAGTTTATTATTGTCAAATAACTTTAAGATGGCTTTGGACTATATGTTCATGAGGCCTTGCTTAGCTATGACTCCAAAACTGATAGCTTTCAGGCAAGATAATGTGAATATTACATCCAATCCAATGGTTGAAGGTGTAGAAAAATTGGTGAATGATATCGTGCAACAGGGAAAAGAGAGTACTGTTAGTAATGTACCACACTTGGAAATGGACTTTGAGTCTGAGGCCTTGGCATATGAATTTTATAATGAGAAATGTGGTTTTGGTATCCGTCGAGAATATGCAAATAAAAGCAAAAAAGATGGAGTTCTTACTTCAAGAAAATTTGTGTGCTCCAAAGAGGGTAGACGCGGTGTCGACAAACGTGATTACTTAACAAAAGAGGCTCGAGCAGAAACTAGAACAGGATGTTTAGCACGTATGAAGCTGACAATGGAAGTCTACATGAGATTAGGATCCAAATGTCAAATGAGATTAGGATCTAACACAATTGGGATGACACGCAGTGGGAATTGGAGGATTGTGGGGAATAATATCAACTGGGATAAGCTAAGACCATCCTTAGTTGAAACCTCTTCATGTGTTCGCCACGTGTCTGATTGTTATCAAGATCTAAAGCCCGGGGATCATATTGAAATTCAATGGAGAGGAAACACTCAAACTCCTTATGACCGGTGGTATGCTGTTATTGGTCACCTAGATTCTTGTAATGAAAATGAGAATTATTGCTCCTGCCAAAATTCTGAGACTTTGGTGGTAGAGTTCAAGCAATACCCTCGTGGGTCAAGCATGAGAAGAACAATGCTATGCAGACATAACAATGGGGAACAAGCAGAAAATTCGATCGGAAACTATGGGGGAATTAGAAAGCTTCACAATGAAGAAGAGATTGAAAAATGGAAGGAGCTCTTAGATCATCAACTATATGTATAA

Protein sequence

>Msa1033330

MKETSMKKIANSASISLLNFPESILDGILERLSPIELIKMSEMKQKWGRVIGDVALKEWQWHVTSITAEEGSVLNQQINNIQNGSLGSFSGSWPMLCLGSYLEECTHLKSLLLSNNFKMALDYMFMRPCLAMTPKLIAFRQDNVNITSNPMVEGVEKLVNDIVQQGKESTVSNVPHLEMDFESEALAYEFYNEKCGFGIRREYANKSKKDGVLTSRKFVCSKEGRRGVDKRDYLTKEARAETRTGCLARMKLTMEVYMRLGSKCQMRLGSNTIGMTRSGNWRIVGNNINWDKLRPSLVETSSCVRHVSDCYQDLKPGDHIEIQWRGNTQTPYDRWYAVIGHLDSCNENENYCSCQNSETLVVEFKQYPRGSSMRRTMLCRHNNGEQAENSIGNYGGIRKLHNEEEIEKWKELLDHQLYV*