AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1035280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035280 MtrunA17_Chr7g0258831 95.593 295 11 1 1 293 1 295 0.0 577
Msa1035280 MtrunA17_Chr1g0175651 68.841 276 76 6 1 273 1 269 7.49e-117 338
Msa1035280 MtrunA17_Chr2g0308611 80.263 152 20 2 135 283 181 325 1.90e-77 239
Msa1035280 MtrunA17_Chr4g0055851 64.362 188 57 2 86 272 57 235 1.54e-73 227
Msa1035280 MtrunA17_Chr5g0399491 62.051 195 66 4 86 279 71 258 4.04e-70 219
Msa1035280 MtrunA17_Chr4g0054421 77.600 125 26 1 148 270 115 239 1.44e-65 206
Msa1035280 MtrunA17_Chr8g0335131 65.341 176 48 3 104 269 86 258 2.78e-65 206
Msa1035280 MtrunA17_Chr5g0400781 67.626 139 45 0 149 287 114 252 1.48e-64 204
Msa1035280 MtrunA17_Chr1g0151971 62.590 139 50 1 157 293 129 267 1.22e-55 181
Msa1035280 MtrunA17_Chr4g0044091 65.323 124 36 2 153 269 59 182 2.44e-48 159
Msa1035280 MtrunA17_Chr3g0135331 67.939 131 40 2 149 278 136 265 6.38e-48 162
Msa1035280 MtrunA17_Chr2g0299031 56.618 136 55 2 136 270 63 195 1.72e-40 140
Msa1035280 MtrunA17_Chr4g0071411 58.772 114 43 1 160 269 90 203 1.10e-35 127
Msa1035280 MtrunA17_Chr7g0217111 44.737 114 59 1 139 248 61 174 1.36e-19 86.3
Msa1035280 MtrunA17_Chr6g0450991 40.146 137 80 1 155 291 64 198 2.64e-19 85.9
Msa1035280 MtrunA17_Chr5g0416391 45.283 106 54 1 150 251 69 174 2.38e-18 83.2
Msa1035280 MtrunA17_Chr1g0179581 45.977 87 47 0 154 240 24 110 2.79e-18 78.6
Msa1035280 MtrunA17_Chr4g0060031 48.077 104 52 1 144 245 79 182 3.94e-18 83.2
Msa1035280 MtrunA17_Chr8g0362151 41.085 129 69 3 130 251 46 174 4.39e-18 82.4
Msa1035280 MtrunA17_Chr6g0453021 39.726 146 77 3 110 244 44 189 2.15e-17 80.1
Msa1035280 MtrunA17_Chr5g0415941 47.872 94 42 1 158 244 87 180 3.32e-17 80.5
Msa1035280 MtrunA17_Chr7g0265521 41.935 93 54 0 153 245 58 150 4.95e-17 78.6
Msa1035280 MtrunA17_Chr3g0119291 45.283 106 49 2 149 245 48 153 1.89e-16 77.4
Msa1035280 MtrunA17_Chr8g0362751 45.745 94 44 1 158 244 89 182 3.77e-16 77.0
Msa1035280 MtrunA17_Chr8g0381741 43.750 112 53 2 141 245 40 148 2.00e-15 75.1
Msa1035280 MtrunA17_Chr3g0123691 35.294 170 89 4 119 279 33 190 3.73e-15 74.3
Msa1035280 MtrunA17_Chr8g0346251 42.683 82 47 0 162 243 45 126 4.63e-12 64.7
Msa1035280 MtrunA17_Chr3g0127511 41.935 93 47 1 161 246 41 133 6.04e-12 64.3
Msa1035280 MtrunA17_Chr5g0410711 30.769 130 89 1 125 254 60 188 2.91e-11 63.9
Msa1035280 MtrunA17_Chr2g0331581 35.246 122 60 1 161 282 145 247 5.91e-11 63.2
Msa1035280 MtrunA17_Chr5g0403691 38.889 108 61 1 135 242 35 137 8.38e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035280 AT5G06710.1 51.713 321 91 10 1 273 1 305 5.98e-87 263
Msa1035280 AT5G47370.1 55.217 230 86 7 52 271 22 244 8.47e-70 218
Msa1035280 AT4G37790.1 81.967 122 22 0 149 270 117 238 4.16e-69 216
Msa1035280 AT3G60390.1 50.562 267 83 8 42 269 18 274 7.28e-68 214
Msa1035280 AT2G44910.1 49.237 262 98 8 46 272 17 278 7.76e-67 211
Msa1035280 AT2G22800.1 77.049 122 28 0 149 270 104 225 4.04e-65 206
Msa1035280 AT4G16780.1 62.857 175 57 3 106 272 70 244 4.08e-65 206
Msa1035280 AT4G17460.1 54.393 239 80 9 52 271 21 249 1.21e-63 202
Msa1035280 AT2G01430.1 61.029 136 51 2 135 270 116 249 1.42e-47 160
Msa1035280 AT5G06710.4 42.412 257 84 10 1 209 1 241 9.22e-40 140
Msa1035280 AT1G70920.1 58.015 131 46 2 142 270 51 174 1.35e-39 137
Msa1035280 AT1G70920.2 58.015 131 46 2 142 270 21 144 1.47e-39 137
Msa1035280 AT2G01430.2 62.667 75 28 0 135 209 116 190 1.49e-23 96.3
Msa1035280 AT5G06710.2 36.087 230 83 10 1 182 1 214 1.27e-18 83.2
Msa1035280 AT5G06710.3 36.087 230 83 10 1 182 1 214 1.27e-18 83.2
Msa1035280 AT1G26960.1 39.744 156 81 5 143 291 57 206 2.54e-18 82.8
Msa1035280 AT1G69780.1 45.872 109 56 2 140 245 64 172 3.83e-18 83.2
Msa1035280 AT2G36610.1 42.157 102 51 1 153 246 66 167 3.69e-17 78.2
Msa1035280 AT5G03790.1 39.823 113 67 1 153 264 72 184 4.36e-17 79.0
Msa1035280 AT3G01220.1 42.857 119 56 2 144 250 65 183 6.22e-17 79.7
Msa1035280 AT5G15150.1 45.000 120 55 4 136 247 92 208 1.86e-16 78.6
Msa1035280 AT3G01470.1 46.739 92 49 0 158 249 68 159 7.75e-16 76.3
Msa1035280 AT2G22430.1 45.455 99 50 1 154 248 58 156 4.75e-15 74.3
Msa1035280 AT5G65310.1 42.857 98 49 1 155 245 69 166 6.47e-15 74.3
Msa1035280 AT5G65310.2 42.857 98 49 1 155 245 51 148 7.36e-15 73.9
Msa1035280 AT1G27045.5 56.061 66 29 0 158 223 25 90 1.75e-14 70.9
Msa1035280 AT1G27045.3 56.061 66 29 0 158 223 25 90 1.75e-14 70.9
Msa1035280 AT1G27045.2 56.061 66 29 0 158 223 17 82 2.00e-14 70.5
Msa1035280 AT1G27045.1 56.061 66 29 0 158 223 68 133 2.31e-14 71.2
Msa1035280 AT1G27045.4 45.098 102 48 2 158 252 68 168 3.80e-14 71.2
Msa1035280 AT2G18550.1 45.361 97 52 1 148 244 52 147 5.18e-14 70.1
Msa1035280 AT4G40060.1 42.857 98 52 1 154 247 55 152 6.66e-14 70.9
Msa1035280 AT5G03790.2 42.045 88 51 0 153 240 72 159 1.10e-13 68.6
Msa1035280 AT2G46680.2 41.758 91 53 0 153 243 27 117 1.19e-13 69.7
Msa1035280 AT2G46680.1 41.758 91 53 0 153 243 27 117 1.22e-13 69.7
Msa1035280 AT4G36740.1 41.837 98 56 1 147 244 45 141 4.82e-12 64.7
Msa1035280 AT4G36740.2 41.837 98 56 1 147 244 46 142 4.84e-12 64.7
Msa1035280 AT3G61890.1 42.169 83 48 0 161 243 33 115 1.53e-11 63.5

Find 93 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATCTAAAATAAGAAAAT+TGG 0.147340 7_1:+71064237 None:intergenic
CTCTTCTCGACTACTGTTTC+TGG 0.172775 7_1:+71065680 None:intergenic
CTTCGAATTCCCTGGCTTAA+TGG 0.240731 7_1:-71066079 Msa1035280:CDS
ATAAGAACCGTTGTCATTAT+TGG 0.263146 7_1:+71064351 None:intergenic
ACCAGCGATGATGAAGAAAA+TGG 0.272695 7_1:-71065642 Msa1035280:CDS
TATAGCCAAGGGCAATAATC+TGG 0.313688 7_1:+71064297 None:intergenic
AATATGACGCTGCACTATTC+GGG 0.319466 7_1:+71065748 None:intergenic
CTCTAACAGAAGAAAATAAA+AGG 0.327202 7_1:-71064544 Msa1035280:CDS
CCACGGACGCCAACCGGAAT+TGG 0.334110 7_1:+71065805 None:intergenic
TAATATGACGCTGCACTATT+CGG 0.334434 7_1:+71065747 None:intergenic
GAAGAAACTCAGACTCTCTA+AGG 0.373372 7_1:-71065610 Msa1035280:CDS
TTGTTTAGTGGCAGTGGTTC+CGG 0.381277 7_1:+71064403 None:intergenic
GGAGAAGAGTAGAAAACTAT+AGG 0.382606 7_1:+71066392 None:intergenic
CTCCACTTCTTCGAATTCCC+TGG 0.385540 7_1:-71066087 Msa1035280:CDS
TATCGGATGTGAACCAATTC+CGG 0.385580 7_1:-71065818 Msa1035280:CDS
CACTTCCGTTTGCTTTAACT+TGG 0.385691 7_1:+71064598 None:intergenic
GTCCACGTCAAGTAGAAGTT+TGG 0.395922 7_1:-71064798 Msa1035280:CDS
AATCGAGATGGTTTGTTTAG+TGG 0.400673 7_1:+71064391 None:intergenic
TCATTATTGGCGGTGCCCAC+CGG 0.402169 7_1:+71064364 None:intergenic
ATGGAGCTGGCTTTGAGCTT+AGG 0.426776 7_1:-71066292 Msa1035280:CDS
TATCCTCCACGGACGCCAAC+CGG 0.430609 7_1:+71065799 None:intergenic
CCAATTCCGGTTGGCGTCCG+TGG 0.435135 7_1:-71065805 Msa1035280:CDS
CTATGTGTCCTTCTTGTGAA+AGG 0.437758 7_1:-71064442 Msa1035280:CDS
ATATCTAAAATAAGAAAATT+GGG 0.440376 7_1:+71064238 None:intergenic
GAGTCTGAGTTTCTTCCTTG+TGG 0.443252 7_1:+71065617 None:intergenic
AGAAAATAAAAGGTTACAAA+AGG 0.465210 7_1:-71064534 Msa1035280:CDS
GATGGTTTGTTTAGTGGCAG+TGG 0.466617 7_1:+71064397 None:intergenic
AGTTCAATCACCGATGGAGC+TGG 0.469281 7_1:-71066305 Msa1035280:exon
TTCGAAGAAGTGGAGAAGGC+TGG 0.476464 7_1:+71066095 None:intergenic
GTGGAGAAGGCTGGGAGTGA+AGG 0.477756 7_1:+71066104 None:intergenic
CACATAGTGAGAGTGGTAGC+TGG 0.479169 7_1:+71064458 None:intergenic
CAGAAACAGTAGTCGAGAAG+AGG 0.481552 7_1:-71065679 Msa1035280:CDS
GGCTGCAGTTGGTGTGGAAC+CGG 0.481908 7_1:-71065847 Msa1035280:intron
GAGTGAAGGACCGGTGTTGA+AGG 0.484612 7_1:+71066118 None:intergenic
GGCAGTGGTTCCGGTGGTGT+TGG 0.486933 7_1:+71064412 None:intergenic
TTTACTTGCACCATTAAGCC+AGG 0.488537 7_1:+71066069 None:intergenic
GGAAGAAGATTGAGCTGAAT+GGG 0.496713 7_1:+71066139 None:intergenic
CAAGTTAAAGCAAACGGAAG+TGG 0.499846 7_1:-71064597 Msa1035280:CDS
AGTGGTTCCGGTGGTGTTGG+TGG 0.508654 7_1:+71064415 None:intergenic
CCAGCGATGATGAAGAAAAT+GGG 0.527273 7_1:-71065641 Msa1035280:CDS
AGGAAGAAGATTGAGCTGAA+TGG 0.527689 7_1:+71066138 None:intergenic
AGAACACACCACTCTCAATC+CGG 0.532530 7_1:-71065556 Msa1035280:intron
CAGGACCAAGTTAAAGCAAA+CGG 0.533115 7_1:-71064603 Msa1035280:CDS
TATGTGTCCTTCTTGTGAAA+GGG 0.534150 7_1:-71064441 Msa1035280:CDS
CAATCTTCTTCCTTCAACAC+CGG 0.539071 7_1:-71066128 Msa1035280:CDS
GCAGAAACAGAAACTTGCTC+TGG 0.539316 7_1:-71064839 Msa1035280:intron
AGAACCGTTGTCATTATTGG+CGG 0.539567 7_1:+71064354 None:intergenic
AAGCTCAAAGCCAGCTCCAT+CGG 0.539731 7_1:+71066295 None:intergenic
TCGAAGAAGTGGAGAAGGCT+GGG 0.542272 7_1:+71066096 None:intergenic
AGCCAGGGAATTCGAAGAAG+TGG 0.543327 7_1:+71066085 None:intergenic
GAAGGCTGGGAGTGAAGGAC+CGG 0.549545 7_1:+71066109 None:intergenic
ATCGTTTCTAGTATTCCAAA+GGG 0.550515 7_1:+71066371 None:intergenic
CCGAATTGACCAAACAAAAG+AGG 0.551105 7_1:+71066431 None:intergenic
AACTTTAGTTCAATCACCGA+TGG 0.551483 7_1:-71066311 Msa1035280:exon
ATAGCCAAGGGCAATAATCT+GGG 0.552582 7_1:+71064298 None:intergenic
GAAGCCCAGATTATTGCCCT+TGG 0.554740 7_1:-71064302 Msa1035280:three_prime_UTR
GTGGCGACCCTTTCACAAGA+AGG 0.556254 7_1:+71064434 None:intergenic
AATCGTTTCTAGTATTCCAA+AGG 0.560250 7_1:+71066370 None:intergenic
GCTAAACCGTGTTCTTCAAG+TGG 0.571158 7_1:+71066202 None:intergenic
TAAATTATAGGCTATAGCCA+AGG 0.572931 7_1:+71064285 None:intergenic
AGAAACAGTAGTCGAGAAGA+GGG 0.577673 7_1:-71065678 Msa1035280:CDS
CCCACCGGTGGTAATCGAGA+TGG 0.582759 7_1:+71064379 None:intergenic
AGGGTCGCCACCAACACCAC+CGG 0.588362 7_1:-71064422 Msa1035280:CDS
GCTGGAAGTTGCATGTAGAA+TGG 0.591856 7_1:+71064476 None:intergenic
ACCATCTCGATTACCACCGG+TGG 0.592762 7_1:-71064380 Msa1035280:CDS
GGAATTCGAAGAAGTGGAGA+AGG 0.592815 7_1:+71066091 None:intergenic
AGAAGATTGAGCTGAATGGG+TGG 0.595515 7_1:+71066142 None:intergenic
TTCACATCCGATACTCTCAC+CGG 0.595525 7_1:+71065828 None:intergenic
AGAAGGACACATAGTGAGAG+TGG 0.600200 7_1:+71064451 None:intergenic
TGCAGCGTCATATTATCAGA+TGG 0.603249 7_1:-71065739 Msa1035280:CDS
TATTATTACCGGATTGAGAG+TGG 0.604923 7_1:+71065548 None:intergenic
AACCAAACTTCTACTTGACG+TGG 0.605331 7_1:+71064796 None:intergenic
TTATTGGCGGTGCCCACCGG+TGG 0.607951 7_1:+71064367 None:intergenic
GTTTACGGCTGCAGTTGGTG+TGG 0.608602 7_1:-71065853 Msa1035280:intron
CAGTAGTCGAGAAGAGGGTG+CGG 0.609350 7_1:-71065673 Msa1035280:CDS
GGTTTCAGAATAGAAGAGCA+AGG 0.612001 7_1:-71064777 Msa1035280:intron
ATGAAGAAAATGGGTCCACA+AGG 0.617090 7_1:-71065632 Msa1035280:CDS
AAATTATAGGCTATAGCCAA+GGG 0.622732 7_1:+71064286 None:intergenic
GAGCTGAATGGGTGGATCTG+AGG 0.625502 7_1:+71066150 None:intergenic
TGTGGAACCGGTGAGAGTAT+CGG 0.632478 7_1:-71065835 Msa1035280:CDS
ATTCCGGTTGGCGTCCGTGG+AGG 0.636105 7_1:-71065802 Msa1035280:CDS
ATATGACGCTGCACTATTCG+GGG 0.636746 7_1:+71065749 None:intergenic
CCATCTCGATTACCACCGGT+GGG 0.643789 7_1:-71064379 Msa1035280:CDS
TGCATACCACTTGAAGAACA+CGG 0.644956 7_1:-71066208 Msa1035280:CDS
CAAACCATCTCGATTACCAC+CGG 0.647502 7_1:-71064383 Msa1035280:CDS
TGAAACTGCAGCTCCCTCGT+CGG 0.652204 7_1:+71065773 None:intergenic
GGATGTGAACCAATTCCGGT+TGG 0.657900 7_1:-71065814 Msa1035280:CDS
TTTAGTGGCAGTGGTTCCGG+TGG 0.663174 7_1:+71064406 None:intergenic
TTACTTGCACCATTAAGCCA+GGG 0.674390 7_1:+71066070 None:intergenic
GGCACCGCCAATAATGACAA+CGG 0.678892 7_1:-71064358 Msa1035280:exon
CTCGTCGGTAGTATCCTCCA+CGG 0.686078 7_1:+71065788 None:intergenic
CGTGGAGGATACTACCGACG+AGG 0.692188 7_1:-71065787 Msa1035280:CDS
GTGGAGGATACTACCGACGA+GGG 0.757148 7_1:-71065786 Msa1035280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAATAAATATTGTTATTTT+AGG - chr7_1:71065680-71065699 Msa1035280:CDS 10.0%
!!! ATGTTTTTCATTTTTTTATT+AGG + chr7_1:71065945-71065964 None:intergenic 10.0%
!!! ATATCTAAAATAAGAAAATT+GGG + chr7_1:71066339-71066358 None:intergenic 10.0%
!!! TATATCTAAAATAAGAAAAT+TGG + chr7_1:71066340-71066359 None:intergenic 10.0%
!!! GAAATAAATATTGTTATTTT+AGG - chr7_1:71065680-71065699 Msa1035280:CDS 10.0%
!!! ATGTTTTTCATTTTTTTATT+AGG + chr7_1:71065945-71065964 None:intergenic 10.0%
!!! ATATCTAAAATAAGAAAATT+GGG + chr7_1:71066339-71066358 None:intergenic 10.0%
!!! TATATCTAAAATAAGAAAAT+TGG + chr7_1:71066340-71066359 None:intergenic 10.0%
!! TATAGTTACTTAAAAAATAG+GGG + chr7_1:71064688-71064707 None:intergenic 15.0%
!! GTATAGTTACTTAAAAAATA+GGG + chr7_1:71064689-71064708 None:intergenic 15.0%
!! AGTATAGTTACTTAAAAAAT+AGG + chr7_1:71064690-71064709 None:intergenic 15.0%
!! TAACTAAATAATCATTTAAC+TGG + chr7_1:71065356-71065375 None:intergenic 15.0%
!! TAACTAAATAATCATTTAAC+TGG + chr7_1:71065356-71065375 None:intergenic 15.0%
!! TGAAAAATCTGATAAATTAT+AGG + chr7_1:71066304-71066323 None:intergenic 15.0%
!! TATAGTTACTTAAAAAATAG+GGG + chr7_1:71064688-71064707 None:intergenic 15.0%
!! GTATAGTTACTTAAAAAATA+GGG + chr7_1:71064689-71064708 None:intergenic 15.0%
!! AGTATAGTTACTTAAAAAAT+AGG + chr7_1:71064690-71064709 None:intergenic 15.0%
!! TAACTAAATAATCATTTAAC+TGG + chr7_1:71065356-71065375 None:intergenic 15.0%
!! TAACTAAATAATCATTTAAC+TGG + chr7_1:71065356-71065375 None:intergenic 15.0%
!! TGAAAAATCTGATAAATTAT+AGG + chr7_1:71066304-71066323 None:intergenic 15.0%
!!! GAAAACTATAGGTTTTTAAA+AGG + chr7_1:71064174-71064193 None:intergenic 20.0%
!! TACTTATATGTGTATGTTTA+CGG - chr7_1:71064706-71064725 Msa1035280:intron 20.0%
!!! TGTTTCTAAAAATTTTGTGT+AGG + chr7_1:71065160-71065179 None:intergenic 20.0%
!!! AAATAATTTGTGATAAGTGT+GGG + chr7_1:71065240-71065259 None:intergenic 20.0%
!!! ATCACAAATTATTTCTCTTT+TGG - chr7_1:71065246-71065265 Msa1035280:intron 20.0%
!! TATAATATAAAAAATCGCAG+AGG - chr7_1:71065548-71065567 Msa1035280:intron 20.0%
!! AAATGAAAAACATAATGTAC+AGG - chr7_1:71065952-71065971 Msa1035280:intron 20.0%
!! AGAAAATAAAAGGTTACAAA+AGG - chr7_1:71066040-71066059 Msa1035280:intron 20.0%
!! CGTAACAAAAAAAAAAAAAG+TGG - chr7_1:71066389-71066408 Msa1035280:five_prime_UTR 20.0%
!!! GAAAACTATAGGTTTTTAAA+AGG + chr7_1:71064174-71064193 None:intergenic 20.0%
!! TACTTATATGTGTATGTTTA+CGG - chr7_1:71064706-71064725 Msa1035280:intron 20.0%
!!! TGTTTCTAAAAATTTTGTGT+AGG + chr7_1:71065160-71065179 None:intergenic 20.0%
!!! AAATAATTTGTGATAAGTGT+GGG + chr7_1:71065240-71065259 None:intergenic 20.0%
!!! ATCACAAATTATTTCTCTTT+TGG - chr7_1:71065246-71065265 Msa1035280:intron 20.0%
!! TATAATATAAAAAATCGCAG+AGG - chr7_1:71065548-71065567 Msa1035280:intron 20.0%
!! AAATGAAAAACATAATGTAC+AGG - chr7_1:71065952-71065971 Msa1035280:intron 20.0%
!! AGAAAATAAAAGGTTACAAA+AGG - chr7_1:71066040-71066059 Msa1035280:intron 20.0%
!! CGTAACAAAAAAAAAAAAAG+TGG - chr7_1:71066389-71066408 Msa1035280:five_prime_UTR 20.0%
!! TCAAACAAAGAGAATGTTTT+CGG + chr7_1:71064315-71064334 None:intergenic 25.0%
!! TTTTGTTGGGTAATTTTGTA+GGG + chr7_1:71064341-71064360 None:intergenic 25.0%
!! ATGGATTTTTCTATCATGAA+TGG - chr7_1:71064854-71064873 Msa1035280:intron 25.0%
!! TTTTCTATCATGAATGGTAA+TGG - chr7_1:71064860-71064879 Msa1035280:intron 25.0%
! AAATGAAATGTTGTTAGAGA+GGG + chr7_1:71065055-71065074 None:intergenic 25.0%
!! GATTTTTATCATGCAATACA+TGG - chr7_1:71065106-71065125 Msa1035280:intron 25.0%
!! GAAATAATTTGTGATAAGTG+TGG + chr7_1:71065241-71065260 None:intergenic 25.0%
! AGATATATGATGATATGTGT+GGG + chr7_1:71065272-71065291 None:intergenic 25.0%
!! GCAGAGGATAATTTTATATA+TGG - chr7_1:71065564-71065583 Msa1035280:CDS 25.0%
!! ATCCAGAATTTTTGAATAGT+GGG + chr7_1:71065594-71065613 None:intergenic 25.0%
!! ATTATCTTTTCTGTGTTATG+AGG - chr7_1:71065833-71065852 Msa1035280:CDS 25.0%
! CTCTAACAGAAGAAAATAAA+AGG - chr7_1:71066030-71066049 Msa1035280:intron 25.0%
! AAAAAGTGGTAATATCAAAG+AGG - chr7_1:71066403-71066422 Msa1035280:five_prime_UTR 25.0%
!! TCAAACAAAGAGAATGTTTT+CGG + chr7_1:71064315-71064334 None:intergenic 25.0%
!! TTTTGTTGGGTAATTTTGTA+GGG + chr7_1:71064341-71064360 None:intergenic 25.0%
!! ATGGATTTTTCTATCATGAA+TGG - chr7_1:71064854-71064873 Msa1035280:intron 25.0%
!! TTTTCTATCATGAATGGTAA+TGG - chr7_1:71064860-71064879 Msa1035280:intron 25.0%
! AAATGAAATGTTGTTAGAGA+GGG + chr7_1:71065055-71065074 None:intergenic 25.0%
!! GATTTTTATCATGCAATACA+TGG - chr7_1:71065106-71065125 Msa1035280:intron 25.0%
!! GAAATAATTTGTGATAAGTG+TGG + chr7_1:71065241-71065260 None:intergenic 25.0%
! AGATATATGATGATATGTGT+GGG + chr7_1:71065272-71065291 None:intergenic 25.0%
!! GCAGAGGATAATTTTATATA+TGG - chr7_1:71065564-71065583 Msa1035280:CDS 25.0%
!! ATCCAGAATTTTTGAATAGT+GGG + chr7_1:71065594-71065613 None:intergenic 25.0%
!! ATTATCTTTTCTGTGTTATG+AGG - chr7_1:71065833-71065852 Msa1035280:CDS 25.0%
! CTCTAACAGAAGAAAATAAA+AGG - chr7_1:71066030-71066049 Msa1035280:intron 25.0%
! AAAAAGTGGTAATATCAAAG+AGG - chr7_1:71066403-71066422 Msa1035280:five_prime_UTR 25.0%
!! ATCGTTTCTAGTATTCCAAA+GGG + chr7_1:71064206-71064225 None:intergenic 30.0%
!! AATCGTTTCTAGTATTCCAA+AGG + chr7_1:71064207-71064226 None:intergenic 30.0%
!!! GTTTTTTTTGCTATGCTATG+AGG + chr7_1:71064246-71064265 None:intergenic 30.0%
!! GTTTTGTTGGGTAATTTTGT+AGG + chr7_1:71064342-71064361 None:intergenic 30.0%
!!! GGAATCACTTTTTTGGTTTA+AGG + chr7_1:71064406-71064425 None:intergenic 30.0%
TTTGTCTATACAAAACTACG+AGG + chr7_1:71064544-71064563 None:intergenic 30.0%
CAAATGAAATGTTGTTAGAG+AGG + chr7_1:71065056-71065075 None:intergenic 30.0%
! TTTTATCATGCAATACATGG+AGG - chr7_1:71065109-71065128 Msa1035280:intron 30.0%
GAGATATATGATGATATGTG+TGG + chr7_1:71065273-71065292 None:intergenic 30.0%
ATCAAATGTTAAATCGTGAG+AGG - chr7_1:71065441-71065460 Msa1035280:intron 30.0%
! TCCAGAATTTTTGAATAGTG+GGG + chr7_1:71065593-71065612 None:intergenic 30.0%
! GATCCAGAATTTTTGAATAG+TGG + chr7_1:71065595-71065614 None:intergenic 30.0%
ATAAGAACCGTTGTCATTAT+TGG + chr7_1:71066226-71066245 None:intergenic 30.0%
AAATTATAGGCTATAGCCAA+GGG + chr7_1:71066291-71066310 None:intergenic 30.0%
TAAATTATAGGCTATAGCCA+AGG + chr7_1:71066292-71066311 None:intergenic 30.0%
!! ATCGTTTCTAGTATTCCAAA+GGG + chr7_1:71064206-71064225 None:intergenic 30.0%
!! AATCGTTTCTAGTATTCCAA+AGG + chr7_1:71064207-71064226 None:intergenic 30.0%
!!! GTTTTTTTTGCTATGCTATG+AGG + chr7_1:71064246-71064265 None:intergenic 30.0%
!! GTTTTGTTGGGTAATTTTGT+AGG + chr7_1:71064342-71064361 None:intergenic 30.0%
!!! GGAATCACTTTTTTGGTTTA+AGG + chr7_1:71064406-71064425 None:intergenic 30.0%
TTTGTCTATACAAAACTACG+AGG + chr7_1:71064544-71064563 None:intergenic 30.0%
CAAATGAAATGTTGTTAGAG+AGG + chr7_1:71065056-71065075 None:intergenic 30.0%
! TTTTATCATGCAATACATGG+AGG - chr7_1:71065109-71065128 Msa1035280:intron 30.0%
GAGATATATGATGATATGTG+TGG + chr7_1:71065273-71065292 None:intergenic 30.0%
ATCAAATGTTAAATCGTGAG+AGG - chr7_1:71065441-71065460 Msa1035280:intron 30.0%
! TCCAGAATTTTTGAATAGTG+GGG + chr7_1:71065593-71065612 None:intergenic 30.0%
! GATCCAGAATTTTTGAATAG+TGG + chr7_1:71065595-71065614 None:intergenic 30.0%
ATAAGAACCGTTGTCATTAT+TGG + chr7_1:71066226-71066245 None:intergenic 30.0%
AAATTATAGGCTATAGCCAA+GGG + chr7_1:71066291-71066310 None:intergenic 30.0%
TAAATTATAGGCTATAGCCA+AGG + chr7_1:71066292-71066311 None:intergenic 30.0%
!! CTCTTTTGTTTGGTCAATTC+GGG - chr7_1:71064144-71064163 Msa1035280:three_prime_UTR 35.0%
GGAGAAGAGTAGAAAACTAT+AGG + chr7_1:71064185-71064204 None:intergenic 35.0%
! AACTTTAGTTCAATCACCGA+TGG - chr7_1:71064263-71064282 Msa1035280:three_prime_UTR 35.0%
!!! GGTATGCAGAAAGTTTTGTT+GGG + chr7_1:71064354-71064373 None:intergenic 35.0%
!! TGGTATGCAGAAAGTTTTGT+TGG + chr7_1:71064355-71064374 None:intergenic 35.0%
!!! GATCTGAGGAATCACTTTTT+TGG + chr7_1:71064413-71064432 None:intergenic 35.0%
AAAACTACGAGGAAACAAGA+GGG + chr7_1:71064533-71064552 None:intergenic 35.0%
TAATATGACGCTGCACTATT+CGG + chr7_1:71064830-71064849 None:intergenic 35.0%
TATTATTACCGGATTGAGAG+TGG + chr7_1:71065029-71065048 None:intergenic 35.0%
!! AGAGAGGGTGTTATTATTAC+CGG + chr7_1:71065040-71065059 None:intergenic 35.0%
ATCAAATGTGAAATCGTGAG+AGG - chr7_1:71065327-71065346 Msa1035280:intron 35.0%
! CCAGAATTTTTGAATAGTGG+GGG + chr7_1:71065592-71065611 None:intergenic 35.0%
!! GTTTCTGTTTCTGCAGATTT+GGG + chr7_1:71065729-71065748 None:intergenic 35.0%
!! AGTTTCTGTTTCTGCAGATT+TGG + chr7_1:71065730-71065749 None:intergenic 35.0%
ATAGAAGAGCAAGGTAACTA+AGG - chr7_1:71065806-71065825 Msa1035280:CDS 35.0%
TAGAAGAGCAAGGTAACTAA+GGG - chr7_1:71065807-71065826 Msa1035280:CDS 35.0%
TATGTGTCCTTCTTGTGAAA+GGG - chr7_1:71066133-71066152 Msa1035280:CDS 35.0%
!! AATCGAGATGGTTTGTTTAG+TGG + chr7_1:71066186-71066205 None:intergenic 35.0%
GAATTGACCAAACAAAAGAG+GGG + chr7_1:71064144-71064163 None:intergenic 35.0%
CGAATTGACCAAACAAAAGA+GGG + chr7_1:71064145-71064164 None:intergenic 35.0%
!! CTCTTTTGTTTGGTCAATTC+GGG - chr7_1:71064144-71064163 Msa1035280:three_prime_UTR 35.0%
GGAGAAGAGTAGAAAACTAT+AGG + chr7_1:71064185-71064204 None:intergenic 35.0%
! AACTTTAGTTCAATCACCGA+TGG - chr7_1:71064263-71064282 Msa1035280:three_prime_UTR 35.0%
!!! GGTATGCAGAAAGTTTTGTT+GGG + chr7_1:71064354-71064373 None:intergenic 35.0%
!! TGGTATGCAGAAAGTTTTGT+TGG + chr7_1:71064355-71064374 None:intergenic 35.0%
!!! GATCTGAGGAATCACTTTTT+TGG + chr7_1:71064413-71064432 None:intergenic 35.0%
AAAACTACGAGGAAACAAGA+GGG + chr7_1:71064533-71064552 None:intergenic 35.0%
TAATATGACGCTGCACTATT+CGG + chr7_1:71064830-71064849 None:intergenic 35.0%
TATTATTACCGGATTGAGAG+TGG + chr7_1:71065029-71065048 None:intergenic 35.0%
!! AGAGAGGGTGTTATTATTAC+CGG + chr7_1:71065040-71065059 None:intergenic 35.0%
ATCAAATGTGAAATCGTGAG+AGG - chr7_1:71065327-71065346 Msa1035280:intron 35.0%
! CCAGAATTTTTGAATAGTGG+GGG + chr7_1:71065592-71065611 None:intergenic 35.0%
!! GTTTCTGTTTCTGCAGATTT+GGG + chr7_1:71065729-71065748 None:intergenic 35.0%
!! AGTTTCTGTTTCTGCAGATT+TGG + chr7_1:71065730-71065749 None:intergenic 35.0%
ATAGAAGAGCAAGGTAACTA+AGG - chr7_1:71065806-71065825 Msa1035280:CDS 35.0%
TAGAAGAGCAAGGTAACTAA+GGG - chr7_1:71065807-71065826 Msa1035280:CDS 35.0%
TATGTGTCCTTCTTGTGAAA+GGG - chr7_1:71066133-71066152 Msa1035280:CDS 35.0%
!! AATCGAGATGGTTTGTTTAG+TGG + chr7_1:71066186-71066205 None:intergenic 35.0%
! GTTTTCTACTCTTCTCCCTT+TGG - chr7_1:71064188-71064207 Msa1035280:three_prime_UTR 40.0%
TGCATACCACTTGAAGAACA+CGG - chr7_1:71064366-71064385 Msa1035280:exon 40.0%
GGAAGAAGATTGAGCTGAAT+GGG + chr7_1:71064438-71064457 None:intergenic 40.0%
AGGAAGAAGATTGAGCTGAA+TGG + chr7_1:71064439-71064458 None:intergenic 40.0%
CAATCTTCTTCCTTCAACAC+CGG - chr7_1:71064446-71064465 Msa1035280:CDS 40.0%
TTACTTGCACCATTAAGCCA+GGG + chr7_1:71064507-71064526 None:intergenic 40.0%
TTTACTTGCACCATTAAGCC+AGG + chr7_1:71064508-71064527 None:intergenic 40.0%
CAAAACTACGAGGAAACAAG+AGG + chr7_1:71064534-71064553 None:intergenic 40.0%
TATCGGATGTGAACCAATTC+CGG - chr7_1:71064756-71064775 Msa1035280:intron 40.0%
AATATGACGCTGCACTATTC+GGG + chr7_1:71064829-71064848 None:intergenic 40.0%
TGCAGCGTCATATTATCAGA+TGG - chr7_1:71064835-71064854 Msa1035280:CDS 40.0%
AGAAACAGTAGTCGAGAAGA+GGG - chr7_1:71064896-71064915 Msa1035280:intron 40.0%
ACCAGCGATGATGAAGAAAA+TGG - chr7_1:71064932-71064951 Msa1035280:intron 40.0%
CCAGCGATGATGAAGAAAAT+GGG - chr7_1:71064933-71064952 Msa1035280:intron 40.0%
ATGAAGAAAATGGGTCCACA+AGG - chr7_1:71064942-71064961 Msa1035280:intron 40.0%
GAAGAAACTCAGACTCTCTA+AGG - chr7_1:71064964-71064983 Msa1035280:intron 40.0%
ATGGAGGAAAAACCTTCAAG+TGG - chr7_1:71065125-71065144 Msa1035280:intron 40.0%
TGGAGGAAAAACCTTCAAGT+GGG - chr7_1:71065126-71065145 Msa1035280:intron 40.0%
TGTGATAAGTGTGGGTCATA+TGG + chr7_1:71065232-71065251 None:intergenic 40.0%
CCCCCACTATTCAAAAATTC+TGG - chr7_1:71065589-71065608 Msa1035280:CDS 40.0%
AACCAAACTTCTACTTGACG+TGG + chr7_1:71065781-71065800 None:intergenic 40.0%
GGTTTCAGAATAGAAGAGCA+AGG - chr7_1:71065797-71065816 Msa1035280:CDS 40.0%
CAGGACCAAGTTAAAGCAAA+CGG - chr7_1:71065971-71065990 Msa1035280:intron 40.0%
CACTTCCGTTTGCTTTAACT+TGG + chr7_1:71065979-71065998 None:intergenic 40.0%
CAAGTTAAAGCAAACGGAAG+TGG - chr7_1:71065977-71065996 Msa1035280:intron 40.0%
CTATGTGTCCTTCTTGTGAA+AGG - chr7_1:71066132-71066151 Msa1035280:CDS 40.0%
AGAACCGTTGTCATTATTGG+CGG + chr7_1:71066223-71066242 None:intergenic 40.0%
ATAGCCAAGGGCAATAATCT+GGG + chr7_1:71066279-71066298 None:intergenic 40.0%
TATAGCCAAGGGCAATAATC+TGG + chr7_1:71066280-71066299 None:intergenic 40.0%
CCGAATTGACCAAACAAAAG+AGG + chr7_1:71064146-71064165 None:intergenic 40.0%
! GTTTTCTACTCTTCTCCCTT+TGG - chr7_1:71064188-71064207 Msa1035280:three_prime_UTR 40.0%
TGCATACCACTTGAAGAACA+CGG - chr7_1:71064366-71064385 Msa1035280:exon 40.0%
GGAAGAAGATTGAGCTGAAT+GGG + chr7_1:71064438-71064457 None:intergenic 40.0%
AGGAAGAAGATTGAGCTGAA+TGG + chr7_1:71064439-71064458 None:intergenic 40.0%
CAATCTTCTTCCTTCAACAC+CGG - chr7_1:71064446-71064465 Msa1035280:CDS 40.0%
TTACTTGCACCATTAAGCCA+GGG + chr7_1:71064507-71064526 None:intergenic 40.0%
TTTACTTGCACCATTAAGCC+AGG + chr7_1:71064508-71064527 None:intergenic 40.0%
CAAAACTACGAGGAAACAAG+AGG + chr7_1:71064534-71064553 None:intergenic 40.0%
TATCGGATGTGAACCAATTC+CGG - chr7_1:71064756-71064775 Msa1035280:intron 40.0%
AATATGACGCTGCACTATTC+GGG + chr7_1:71064829-71064848 None:intergenic 40.0%
TGCAGCGTCATATTATCAGA+TGG - chr7_1:71064835-71064854 Msa1035280:CDS 40.0%
AGAAACAGTAGTCGAGAAGA+GGG - chr7_1:71064896-71064915 Msa1035280:intron 40.0%
ACCAGCGATGATGAAGAAAA+TGG - chr7_1:71064932-71064951 Msa1035280:intron 40.0%
CCAGCGATGATGAAGAAAAT+GGG - chr7_1:71064933-71064952 Msa1035280:intron 40.0%
ATGAAGAAAATGGGTCCACA+AGG - chr7_1:71064942-71064961 Msa1035280:intron 40.0%
GAAGAAACTCAGACTCTCTA+AGG - chr7_1:71064964-71064983 Msa1035280:intron 40.0%
ATGGAGGAAAAACCTTCAAG+TGG - chr7_1:71065125-71065144 Msa1035280:intron 40.0%
TGGAGGAAAAACCTTCAAGT+GGG - chr7_1:71065126-71065145 Msa1035280:intron 40.0%
TGTGATAAGTGTGGGTCATA+TGG + chr7_1:71065232-71065251 None:intergenic 40.0%
CCCCCACTATTCAAAAATTC+TGG - chr7_1:71065589-71065608 Msa1035280:CDS 40.0%
AACCAAACTTCTACTTGACG+TGG + chr7_1:71065781-71065800 None:intergenic 40.0%
GGTTTCAGAATAGAAGAGCA+AGG - chr7_1:71065797-71065816 Msa1035280:CDS 40.0%
CAGGACCAAGTTAAAGCAAA+CGG - chr7_1:71065971-71065990 Msa1035280:intron 40.0%
CACTTCCGTTTGCTTTAACT+TGG + chr7_1:71065979-71065998 None:intergenic 40.0%
CAAGTTAAAGCAAACGGAAG+TGG - chr7_1:71065977-71065996 Msa1035280:intron 40.0%
CTATGTGTCCTTCTTGTGAA+AGG - chr7_1:71066132-71066151 Msa1035280:CDS 40.0%
AGAACCGTTGTCATTATTGG+CGG + chr7_1:71066223-71066242 None:intergenic 40.0%
ATAGCCAAGGGCAATAATCT+GGG + chr7_1:71066279-71066298 None:intergenic 40.0%
TATAGCCAAGGGCAATAATC+TGG + chr7_1:71066280-71066299 None:intergenic 40.0%
GCTAAACCGTGTTCTTCAAG+TGG + chr7_1:71064375-71064394 None:intergenic 45.0%
AGAAGATTGAGCTGAATGGG+TGG + chr7_1:71064435-71064454 None:intergenic 45.0%
GGAATTCGAAGAAGTGGAGA+AGG + chr7_1:71064486-71064505 None:intergenic 45.0%
CTTCGAATTCCCTGGCTTAA+TGG - chr7_1:71064495-71064514 Msa1035280:CDS 45.0%
TGTATGTTTACGGCTGCAGT+TGG - chr7_1:71064716-71064735 Msa1035280:intron 45.0%
TTCACATCCGATACTCTCAC+CGG + chr7_1:71064749-71064768 None:intergenic 45.0%
ATATGACGCTGCACTATTCG+GGG + chr7_1:71064828-71064847 None:intergenic 45.0%
CTCTTCTCGACTACTGTTTC+TGG + chr7_1:71064897-71064916 None:intergenic 45.0%
CAGAAACAGTAGTCGAGAAG+AGG - chr7_1:71064895-71064914 Msa1035280:intron 45.0%
! CCCATTTTCTTCATCATCGC+TGG + chr7_1:71064936-71064955 None:intergenic 45.0%
GAGTCTGAGTTTCTTCCTTG+TGG + chr7_1:71064960-71064979 None:intergenic 45.0%
AGAACACACCACTCTCAATC+CGG - chr7_1:71065018-71065037 Msa1035280:intron 45.0%
GGAGGAAAAACCTTCAAGTG+GGG - chr7_1:71065127-71065146 Msa1035280:intron 45.0%
GAGGAAAAACCTTCAAGTGG+GGG - chr7_1:71065128-71065147 Msa1035280:intron 45.0%
! GCAGAAACAGAAACTTGCTC+TGG - chr7_1:71065735-71065754 Msa1035280:CDS 45.0%
GTCCACGTCAAGTAGAAGTT+TGG - chr7_1:71065776-71065795 Msa1035280:CDS 45.0%
GCTGGAAGTTGCATGTAGAA+TGG + chr7_1:71066101-71066120 None:intergenic 45.0%
AGAAGGACACATAGTGAGAG+TGG + chr7_1:71066126-71066145 None:intergenic 45.0%
TTGTTTAGTGGCAGTGGTTC+CGG + chr7_1:71066174-71066193 None:intergenic 45.0%
!! GATGGTTTGTTTAGTGGCAG+TGG + chr7_1:71066180-71066199 None:intergenic 45.0%
CAAACCATCTCGATTACCAC+CGG - chr7_1:71066191-71066210 Msa1035280:CDS 45.0%
GCTAAACCGTGTTCTTCAAG+TGG + chr7_1:71064375-71064394 None:intergenic 45.0%
AGAAGATTGAGCTGAATGGG+TGG + chr7_1:71064435-71064454 None:intergenic 45.0%
GGAATTCGAAGAAGTGGAGA+AGG + chr7_1:71064486-71064505 None:intergenic 45.0%
CTTCGAATTCCCTGGCTTAA+TGG - chr7_1:71064495-71064514 Msa1035280:CDS 45.0%
TGTATGTTTACGGCTGCAGT+TGG - chr7_1:71064716-71064735 Msa1035280:intron 45.0%
TTCACATCCGATACTCTCAC+CGG + chr7_1:71064749-71064768 None:intergenic 45.0%
ATATGACGCTGCACTATTCG+GGG + chr7_1:71064828-71064847 None:intergenic 45.0%
CTCTTCTCGACTACTGTTTC+TGG + chr7_1:71064897-71064916 None:intergenic 45.0%
CAGAAACAGTAGTCGAGAAG+AGG - chr7_1:71064895-71064914 Msa1035280:intron 45.0%
! CCCATTTTCTTCATCATCGC+TGG + chr7_1:71064936-71064955 None:intergenic 45.0%
GAGTCTGAGTTTCTTCCTTG+TGG + chr7_1:71064960-71064979 None:intergenic 45.0%
AGAACACACCACTCTCAATC+CGG - chr7_1:71065018-71065037 Msa1035280:intron 45.0%
GGAGGAAAAACCTTCAAGTG+GGG - chr7_1:71065127-71065146 Msa1035280:intron 45.0%
GAGGAAAAACCTTCAAGTGG+GGG - chr7_1:71065128-71065147 Msa1035280:intron 45.0%
! GCAGAAACAGAAACTTGCTC+TGG - chr7_1:71065735-71065754 Msa1035280:CDS 45.0%
GTCCACGTCAAGTAGAAGTT+TGG - chr7_1:71065776-71065795 Msa1035280:CDS 45.0%
GCTGGAAGTTGCATGTAGAA+TGG + chr7_1:71066101-71066120 None:intergenic 45.0%
AGAAGGACACATAGTGAGAG+TGG + chr7_1:71066126-71066145 None:intergenic 45.0%
TTGTTTAGTGGCAGTGGTTC+CGG + chr7_1:71066174-71066193 None:intergenic 45.0%
!! GATGGTTTGTTTAGTGGCAG+TGG + chr7_1:71066180-71066199 None:intergenic 45.0%
CAAACCATCTCGATTACCAC+CGG - chr7_1:71066191-71066210 Msa1035280:CDS 45.0%
!! AAATAAACAAAATAAATATT+TGG + chr7_1:71065879-71065898 None:intergenic 5.0%
!! AAATAAACAAAATAAATATT+TGG + chr7_1:71065879-71065898 None:intergenic 5.0%
AGTTCAATCACCGATGGAGC+TGG - chr7_1:71064269-71064288 Msa1035280:three_prime_UTR 50.0%
AAGCTCAAAGCCAGCTCCAT+CGG + chr7_1:71064282-71064301 None:intergenic 50.0%
!! ATGGAGCTGGCTTTGAGCTT+AGG - chr7_1:71064282-71064301 Msa1035280:three_prime_UTR 50.0%
TCGAAGAAGTGGAGAAGGCT+GGG + chr7_1:71064481-71064500 None:intergenic 50.0%
TTCGAAGAAGTGGAGAAGGC+TGG + chr7_1:71064482-71064501 None:intergenic 50.0%
CTCCACTTCTTCGAATTCCC+TGG - chr7_1:71064487-71064506 Msa1035280:CDS 50.0%
AGCCAGGGAATTCGAAGAAG+TGG + chr7_1:71064492-71064511 None:intergenic 50.0%
! TGTGGAACCGGTGAGAGTAT+CGG - chr7_1:71064739-71064758 Msa1035280:intron 50.0%
GGATGTGAACCAATTCCGGT+TGG - chr7_1:71064760-71064779 Msa1035280:intron 50.0%
CACATAGTGAGAGTGGTAGC+TGG + chr7_1:71066119-71066138 None:intergenic 50.0%
GGCACCGCCAATAATGACAA+CGG - chr7_1:71066216-71066235 Msa1035280:CDS 50.0%
GAAGCCCAGATTATTGCCCT+TGG - chr7_1:71066272-71066291 Msa1035280:CDS 50.0%
AGTTCAATCACCGATGGAGC+TGG - chr7_1:71064269-71064288 Msa1035280:three_prime_UTR 50.0%
AAGCTCAAAGCCAGCTCCAT+CGG + chr7_1:71064282-71064301 None:intergenic 50.0%
!! ATGGAGCTGGCTTTGAGCTT+AGG - chr7_1:71064282-71064301 Msa1035280:three_prime_UTR 50.0%
TCGAAGAAGTGGAGAAGGCT+GGG + chr7_1:71064481-71064500 None:intergenic 50.0%
TTCGAAGAAGTGGAGAAGGC+TGG + chr7_1:71064482-71064501 None:intergenic 50.0%
CTCCACTTCTTCGAATTCCC+TGG - chr7_1:71064487-71064506 Msa1035280:CDS 50.0%
AGCCAGGGAATTCGAAGAAG+TGG + chr7_1:71064492-71064511 None:intergenic 50.0%
! TGTGGAACCGGTGAGAGTAT+CGG - chr7_1:71064739-71064758 Msa1035280:intron 50.0%
GGATGTGAACCAATTCCGGT+TGG - chr7_1:71064760-71064779 Msa1035280:intron 50.0%
CACATAGTGAGAGTGGTAGC+TGG + chr7_1:71066119-71066138 None:intergenic 50.0%
GGCACCGCCAATAATGACAA+CGG - chr7_1:71066216-71066235 Msa1035280:CDS 50.0%
GAAGCCCAGATTATTGCCCT+TGG - chr7_1:71066272-71066291 Msa1035280:CDS 50.0%
GAGCTGAATGGGTGGATCTG+AGG + chr7_1:71064427-71064446 None:intergenic 55.0%
! GAGTGAAGGACCGGTGTTGA+AGG + chr7_1:71064459-71064478 None:intergenic 55.0%
! GTTTACGGCTGCAGTTGGTG+TGG - chr7_1:71064721-71064740 Msa1035280:intron 55.0%
CTCGTCGGTAGTATCCTCCA+CGG + chr7_1:71064789-71064808 None:intergenic 55.0%
GTGGAGGATACTACCGACGA+GGG - chr7_1:71064788-71064807 Msa1035280:CDS 55.0%
TGAAACTGCAGCTCCCTCGT+CGG + chr7_1:71064804-71064823 None:intergenic 55.0%
CAGTAGTCGAGAAGAGGGTG+CGG - chr7_1:71064901-71064920 Msa1035280:intron 55.0%
GTGGCGACCCTTTCACAAGA+AGG + chr7_1:71066143-71066162 None:intergenic 55.0%
TTTAGTGGCAGTGGTTCCGG+TGG + chr7_1:71066171-71066190 None:intergenic 55.0%
ACCATCTCGATTACCACCGG+TGG - chr7_1:71066194-71066213 Msa1035280:CDS 55.0%
CCATCTCGATTACCACCGGT+GGG - chr7_1:71066195-71066214 Msa1035280:CDS 55.0%
TCATTATTGGCGGTGCCCAC+CGG + chr7_1:71066213-71066232 None:intergenic 55.0%
GAGCTGAATGGGTGGATCTG+AGG + chr7_1:71064427-71064446 None:intergenic 55.0%
! GAGTGAAGGACCGGTGTTGA+AGG + chr7_1:71064459-71064478 None:intergenic 55.0%
! GTTTACGGCTGCAGTTGGTG+TGG - chr7_1:71064721-71064740 Msa1035280:intron 55.0%
CTCGTCGGTAGTATCCTCCA+CGG + chr7_1:71064789-71064808 None:intergenic 55.0%
GTGGAGGATACTACCGACGA+GGG - chr7_1:71064788-71064807 Msa1035280:CDS 55.0%
TGAAACTGCAGCTCCCTCGT+CGG + chr7_1:71064804-71064823 None:intergenic 55.0%
CAGTAGTCGAGAAGAGGGTG+CGG - chr7_1:71064901-71064920 Msa1035280:intron 55.0%
GTGGCGACCCTTTCACAAGA+AGG + chr7_1:71066143-71066162 None:intergenic 55.0%
TTTAGTGGCAGTGGTTCCGG+TGG + chr7_1:71066171-71066190 None:intergenic 55.0%
ACCATCTCGATTACCACCGG+TGG - chr7_1:71066194-71066213 Msa1035280:CDS 55.0%
CCATCTCGATTACCACCGGT+GGG - chr7_1:71066195-71066214 Msa1035280:CDS 55.0%
TCATTATTGGCGGTGCCCAC+CGG + chr7_1:71066213-71066232 None:intergenic 55.0%
GAAGGCTGGGAGTGAAGGAC+CGG + chr7_1:71064468-71064487 None:intergenic 60.0%
GTGGAGAAGGCTGGGAGTGA+AGG + chr7_1:71064473-71064492 None:intergenic 60.0%
! GGCTGCAGTTGGTGTGGAAC+CGG - chr7_1:71064727-71064746 Msa1035280:intron 60.0%
TATCCTCCACGGACGCCAAC+CGG + chr7_1:71064778-71064797 None:intergenic 60.0%
CGTGGAGGATACTACCGACG+AGG - chr7_1:71064787-71064806 Msa1035280:CDS 60.0%
AGGCACAAGCCCCCACTTGA+AGG + chr7_1:71065140-71065159 None:intergenic 60.0%
! AGTGGTTCCGGTGGTGTTGG+TGG + chr7_1:71066162-71066181 None:intergenic 60.0%
CCCACCGGTGGTAATCGAGA+TGG + chr7_1:71066198-71066217 None:intergenic 60.0%
GAAGGCTGGGAGTGAAGGAC+CGG + chr7_1:71064468-71064487 None:intergenic 60.0%
GTGGAGAAGGCTGGGAGTGA+AGG + chr7_1:71064473-71064492 None:intergenic 60.0%
! GGCTGCAGTTGGTGTGGAAC+CGG - chr7_1:71064727-71064746 Msa1035280:intron 60.0%
TATCCTCCACGGACGCCAAC+CGG + chr7_1:71064778-71064797 None:intergenic 60.0%
CGTGGAGGATACTACCGACG+AGG - chr7_1:71064787-71064806 Msa1035280:CDS 60.0%
AGGCACAAGCCCCCACTTGA+AGG + chr7_1:71065140-71065159 None:intergenic 60.0%
! AGTGGTTCCGGTGGTGTTGG+TGG + chr7_1:71066162-71066181 None:intergenic 60.0%
CCCACCGGTGGTAATCGAGA+TGG + chr7_1:71066198-71066217 None:intergenic 60.0%
CCACGGACGCCAACCGGAAT+TGG + chr7_1:71064772-71064791 None:intergenic 65.0%
CCAATTCCGGTTGGCGTCCG+TGG - chr7_1:71064769-71064788 Msa1035280:intron 65.0%
ATTCCGGTTGGCGTCCGTGG+AGG - chr7_1:71064772-71064791 Msa1035280:intron 65.0%
AGGGTCGCCACCAACACCAC+CGG - chr7_1:71066152-71066171 Msa1035280:CDS 65.0%
GGCAGTGGTTCCGGTGGTGT+TGG + chr7_1:71066165-71066184 None:intergenic 65.0%
TTATTGGCGGTGCCCACCGG+TGG + chr7_1:71066210-71066229 None:intergenic 65.0%
CCACGGACGCCAACCGGAAT+TGG + chr7_1:71064772-71064791 None:intergenic 65.0%
CCAATTCCGGTTGGCGTCCG+TGG - chr7_1:71064769-71064788 Msa1035280:intron 65.0%
ATTCCGGTTGGCGTCCGTGG+AGG - chr7_1:71064772-71064791 Msa1035280:intron 65.0%
AGGGTCGCCACCAACACCAC+CGG - chr7_1:71066152-71066171 Msa1035280:CDS 65.0%
GGCAGTGGTTCCGGTGGTGT+TGG + chr7_1:71066165-71066184 None:intergenic 65.0%
TTATTGGCGGTGCCCACCGG+TGG + chr7_1:71066210-71066229 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 71064144 71066452 71064144 ID=Msa1035280;Name=Msa1035280
chr7_1 mRNA 71064144 71066452 71064144 ID=Msa1035280-mRNA-1;Parent=Msa1035280;Name=Msa1035280-mRNA-1;_AED=0.01;_eAED=0.01;_QI=138|1|1|1|1|1|4|223|293
chr7_1 exon 71064144 71064622 71064144 ID=Msa1035280-mRNA-1:exon:17118;Parent=Msa1035280-mRNA-1
chr7_1 exon 71064778 71064857 71064778 ID=Msa1035280-mRNA-1:exon:17117;Parent=Msa1035280-mRNA-1
chr7_1 exon 71065557 71065861 71065557 ID=Msa1035280-mRNA-1:exon:17116;Parent=Msa1035280-mRNA-1
chr7_1 exon 71066074 71066452 71066074 ID=Msa1035280-mRNA-1:exon:17115;Parent=Msa1035280-mRNA-1
chr7_1 five_prime_UTR 71066315 71066452 71066315 ID=Msa1035280-mRNA-1:five_prime_utr;Parent=Msa1035280-mRNA-1
chr7_1 CDS 71066074 71066314 71066074 ID=Msa1035280-mRNA-1:cds;Parent=Msa1035280-mRNA-1
chr7_1 CDS 71065557 71065861 71065557 ID=Msa1035280-mRNA-1:cds;Parent=Msa1035280-mRNA-1
chr7_1 CDS 71064778 71064857 71064778 ID=Msa1035280-mRNA-1:cds;Parent=Msa1035280-mRNA-1
chr7_1 CDS 71064367 71064622 71064367 ID=Msa1035280-mRNA-1:cds;Parent=Msa1035280-mRNA-1
chr7_1 three_prime_UTR 71064144 71064366 71064144 ID=Msa1035280-mRNA-1:three_prime_utr;Parent=Msa1035280-mRNA-1
Gene Sequence

>Msa1035280

ATGGAGCTGGCTTTGAGCTTAGGCGACACACCGAAAACATTCTCTTTGTTTGAAAACCCTACAAAATTACCCAACAAAACTTTCTGCATACCACTTGAAGAACACGGTTTAGCTGAAAAATCCTTAAACCAAAAAAGTGATTCCTCAGATCCACCCATTCAGCTCAATCTTCTTCCTTCAACACCGGTCCTTCACTCCCAGCCTTCTCCACTTCTTCGAATTCCCTGGCTTAATGGTGCAATTGGTGTGGAACCGGTGAGAGTATCGGATGTGAACCAATTCCGGTTGGCGTCCGTGGAGGATACTACCGACGAGGGAGCTGCAGTTTCATCCCCGAATAGTGCAGCGTCATATTATCAGATGGATTTTTCTATCATGAATGGTAATGGTGATGCTGCAGCCAGAAACAGTAGTCGAGAAGAGGGTGCGGATAGAAATACCAGCGATGATGAAGAAAATGGGTCCACAAGGAAGAAACTCAGACTCTCTAAGGAACAATCAGCTTTTCTTGAAGATAGCTTCAAAGAACACACCACTCTCAATCCGAAACAGAAACTTGCTCTGGCAAAACAATTAAATCTTCGTCCACGTCAAGTAGAAGTTTGGTTTCAGAATAGAAGAGCAAGGACCAAGTTAAAGCAAACGGAAGTGGATTGTGAGTACTTAAAAAGATGTTGTGAGACTCTAACAGAAGAAAATAAAAGGTTACAAAAGGAACTTCAAGAATTGAGAGCTTTGAAAACTTCTCAACCATTCTACATGCAACTTCCAGCTACCACTCTCACTATGTGTCCTTCTTGTGAAAGGGTCGCCACCAACACCACCGGAACCACTGCCACTAAACAAACCATCTCGATTACCACCGGTGGGCACCGCCAATAA
Protein sequence

>Msa1035280

MELALSLGDTPKTFSLFENPTKLPNKTFCIPLEEHGLAEKSLNQKSDSSDPPIQLNLLPSTPVLHSQPSPLLRIPWLNGAIGVEPVRVSDVNQFRLASVEDTTDEGAAVSSPNSAASYYQMDFSIMNGNGDAAARNSSREEGADRNTSDDEENGSTRKKLRLSKEQSAFLEDSFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENKRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTTGTTATKQTISITTGGHRQ*