Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162680 | XP_003625279.1 | 95.593 | 295 | 11 | 1 | 1 | 293 | 1 | 295 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162680 | sp|P46665|HAT14_ARATH | 51.713 | 321 | 91 | 10 | 1 | 273 | 1 | 305 | 5.88e-86 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162680 | G7KVF5 | 95.593 | 295 | 11 | 1 | 1 | 293 | 1 | 295 | 0.0 | 577 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1162680 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100600 | Msa1162680 | 0.804868 | 1.756619e-49 | -8.615850e-47 |
| Msa0706690 | Msa1162680 | 0.810018 | 1.420044e-50 | -8.615850e-47 |
| Msa0372100 | Msa1162680 | 0.805660 | 1.199338e-49 | -8.615850e-47 |
| Msa0388250 | Msa1162680 | 0.809146 | 2.185859e-50 | -8.615850e-47 |
| Msa0416210 | Msa1162680 | 0.803370 | 3.600756e-49 | -8.615850e-47 |
| Msa1000780 | Msa1162680 | 0.800546 | 1.369983e-48 | -8.615850e-47 |
| Msa1033430 | Msa1162680 | 0.816160 | 6.380546e-52 | -8.615850e-47 |
| Msa1035280 | Msa1162680 | 0.989296 | 1.623079e-177 | -8.615850e-47 |
| Msa1073050 | Msa1162680 | 0.824448 | 8.028817e-54 | -8.615850e-47 |
| Msa1162680 | Msa1343460 | 0.808145 | 3.576767e-50 | -8.615850e-47 |
| Msa1162680 | Msa1371270 | 0.807848 | 4.136849e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162680 | MtrunA17_Chr7g0258831 | 95.593 | 295 | 11 | 1 | 1 | 293 | 1 | 295 | 0.0 | 577 |
| Msa1162680 | MtrunA17_Chr1g0175651 | 68.841 | 276 | 76 | 6 | 1 | 273 | 1 | 269 | 7.49e-117 | 338 |
| Msa1162680 | MtrunA17_Chr2g0308611 | 80.263 | 152 | 20 | 2 | 135 | 283 | 181 | 325 | 1.90e-77 | 239 |
| Msa1162680 | MtrunA17_Chr4g0055851 | 64.362 | 188 | 57 | 2 | 86 | 272 | 57 | 235 | 1.54e-73 | 227 |
| Msa1162680 | MtrunA17_Chr5g0399491 | 62.051 | 195 | 66 | 4 | 86 | 279 | 71 | 258 | 4.04e-70 | 219 |
| Msa1162680 | MtrunA17_Chr4g0054421 | 77.600 | 125 | 26 | 1 | 148 | 270 | 115 | 239 | 1.44e-65 | 206 |
| Msa1162680 | MtrunA17_Chr8g0335131 | 65.341 | 176 | 48 | 3 | 104 | 269 | 86 | 258 | 2.78e-65 | 206 |
| Msa1162680 | MtrunA17_Chr5g0400781 | 67.626 | 139 | 45 | 0 | 149 | 287 | 114 | 252 | 1.48e-64 | 204 |
| Msa1162680 | MtrunA17_Chr1g0151971 | 62.590 | 139 | 50 | 1 | 157 | 293 | 129 | 267 | 1.22e-55 | 181 |
| Msa1162680 | MtrunA17_Chr4g0044091 | 65.323 | 124 | 36 | 2 | 153 | 269 | 59 | 182 | 2.44e-48 | 159 |
| Msa1162680 | MtrunA17_Chr3g0135331 | 67.939 | 131 | 40 | 2 | 149 | 278 | 136 | 265 | 6.38e-48 | 162 |
| Msa1162680 | MtrunA17_Chr2g0299031 | 56.618 | 136 | 55 | 2 | 136 | 270 | 63 | 195 | 1.72e-40 | 140 |
| Msa1162680 | MtrunA17_Chr4g0071411 | 58.772 | 114 | 43 | 1 | 160 | 269 | 90 | 203 | 1.10e-35 | 127 |
| Msa1162680 | MtrunA17_Chr7g0217111 | 44.737 | 114 | 59 | 1 | 139 | 248 | 61 | 174 | 1.36e-19 | 86.3 |
| Msa1162680 | MtrunA17_Chr6g0450991 | 40.146 | 137 | 80 | 1 | 155 | 291 | 64 | 198 | 2.64e-19 | 85.9 |
| Msa1162680 | MtrunA17_Chr5g0416391 | 45.283 | 106 | 54 | 1 | 150 | 251 | 69 | 174 | 2.38e-18 | 83.2 |
| Msa1162680 | MtrunA17_Chr1g0179581 | 45.977 | 87 | 47 | 0 | 154 | 240 | 24 | 110 | 2.79e-18 | 78.6 |
| Msa1162680 | MtrunA17_Chr4g0060031 | 48.077 | 104 | 52 | 1 | 144 | 245 | 79 | 182 | 3.94e-18 | 83.2 |
| Msa1162680 | MtrunA17_Chr8g0362151 | 41.085 | 129 | 69 | 3 | 130 | 251 | 46 | 174 | 4.39e-18 | 82.4 |
| Msa1162680 | MtrunA17_Chr6g0453021 | 39.726 | 146 | 77 | 3 | 110 | 244 | 44 | 189 | 2.15e-17 | 80.1 |
| Msa1162680 | MtrunA17_Chr5g0415941 | 47.872 | 94 | 42 | 1 | 158 | 244 | 87 | 180 | 3.32e-17 | 80.5 |
| Msa1162680 | MtrunA17_Chr7g0265521 | 41.935 | 93 | 54 | 0 | 153 | 245 | 58 | 150 | 4.95e-17 | 78.6 |
| Msa1162680 | MtrunA17_Chr3g0119291 | 45.283 | 106 | 49 | 2 | 149 | 245 | 48 | 153 | 1.89e-16 | 77.4 |
| Msa1162680 | MtrunA17_Chr8g0362751 | 45.745 | 94 | 44 | 1 | 158 | 244 | 89 | 182 | 3.77e-16 | 77.0 |
| Msa1162680 | MtrunA17_Chr8g0381741 | 43.750 | 112 | 53 | 2 | 141 | 245 | 40 | 148 | 2.00e-15 | 75.1 |
| Msa1162680 | MtrunA17_Chr3g0123691 | 35.294 | 170 | 89 | 4 | 119 | 279 | 33 | 190 | 3.73e-15 | 74.3 |
| Msa1162680 | MtrunA17_Chr8g0346251 | 42.683 | 82 | 47 | 0 | 162 | 243 | 45 | 126 | 4.63e-12 | 64.7 |
| Msa1162680 | MtrunA17_Chr3g0127511 | 41.935 | 93 | 47 | 1 | 161 | 246 | 41 | 133 | 6.04e-12 | 64.3 |
| Msa1162680 | MtrunA17_Chr5g0410711 | 30.769 | 130 | 89 | 1 | 125 | 254 | 60 | 188 | 2.91e-11 | 63.9 |
| Msa1162680 | MtrunA17_Chr2g0331581 | 35.246 | 122 | 60 | 1 | 161 | 282 | 145 | 247 | 5.91e-11 | 63.2 |
| Msa1162680 | MtrunA17_Chr5g0403691 | 38.889 | 108 | 61 | 1 | 135 | 242 | 35 | 137 | 8.38e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162680 | AT5G06710.1 | 51.713 | 321 | 91 | 10 | 1 | 273 | 1 | 305 | 5.98e-87 | 263 |
| Msa1162680 | AT5G47370.1 | 55.217 | 230 | 86 | 7 | 52 | 271 | 22 | 244 | 8.47e-70 | 218 |
| Msa1162680 | AT4G37790.1 | 81.967 | 122 | 22 | 0 | 149 | 270 | 117 | 238 | 4.16e-69 | 216 |
| Msa1162680 | AT3G60390.1 | 50.562 | 267 | 83 | 8 | 42 | 269 | 18 | 274 | 7.28e-68 | 214 |
| Msa1162680 | AT2G44910.1 | 49.237 | 262 | 98 | 8 | 46 | 272 | 17 | 278 | 7.76e-67 | 211 |
| Msa1162680 | AT2G22800.1 | 77.049 | 122 | 28 | 0 | 149 | 270 | 104 | 225 | 4.04e-65 | 206 |
| Msa1162680 | AT4G16780.1 | 62.857 | 175 | 57 | 3 | 106 | 272 | 70 | 244 | 4.08e-65 | 206 |
| Msa1162680 | AT4G17460.1 | 54.393 | 239 | 80 | 9 | 52 | 271 | 21 | 249 | 1.21e-63 | 202 |
| Msa1162680 | AT2G01430.1 | 61.029 | 136 | 51 | 2 | 135 | 270 | 116 | 249 | 1.42e-47 | 160 |
| Msa1162680 | AT5G06710.4 | 42.412 | 257 | 84 | 10 | 1 | 209 | 1 | 241 | 9.22e-40 | 140 |
| Msa1162680 | AT1G70920.1 | 58.015 | 131 | 46 | 2 | 142 | 270 | 51 | 174 | 1.35e-39 | 137 |
| Msa1162680 | AT1G70920.2 | 58.015 | 131 | 46 | 2 | 142 | 270 | 21 | 144 | 1.47e-39 | 137 |
| Msa1162680 | AT2G01430.2 | 62.667 | 75 | 28 | 0 | 135 | 209 | 116 | 190 | 1.49e-23 | 96.3 |
| Msa1162680 | AT5G06710.2 | 36.087 | 230 | 83 | 10 | 1 | 182 | 1 | 214 | 1.27e-18 | 83.2 |
| Msa1162680 | AT5G06710.3 | 36.087 | 230 | 83 | 10 | 1 | 182 | 1 | 214 | 1.27e-18 | 83.2 |
| Msa1162680 | AT1G26960.1 | 39.744 | 156 | 81 | 5 | 143 | 291 | 57 | 206 | 2.54e-18 | 82.8 |
| Msa1162680 | AT1G69780.1 | 45.872 | 109 | 56 | 2 | 140 | 245 | 64 | 172 | 3.83e-18 | 83.2 |
| Msa1162680 | AT2G36610.1 | 42.157 | 102 | 51 | 1 | 153 | 246 | 66 | 167 | 3.69e-17 | 78.2 |
| Msa1162680 | AT5G03790.1 | 39.823 | 113 | 67 | 1 | 153 | 264 | 72 | 184 | 4.36e-17 | 79.0 |
| Msa1162680 | AT3G01220.1 | 42.857 | 119 | 56 | 2 | 144 | 250 | 65 | 183 | 6.22e-17 | 79.7 |
| Msa1162680 | AT5G15150.1 | 45.000 | 120 | 55 | 4 | 136 | 247 | 92 | 208 | 1.86e-16 | 78.6 |
| Msa1162680 | AT3G01470.1 | 46.739 | 92 | 49 | 0 | 158 | 249 | 68 | 159 | 7.75e-16 | 76.3 |
| Msa1162680 | AT2G22430.1 | 45.455 | 99 | 50 | 1 | 154 | 248 | 58 | 156 | 4.75e-15 | 74.3 |
| Msa1162680 | AT5G65310.1 | 42.857 | 98 | 49 | 1 | 155 | 245 | 69 | 166 | 6.47e-15 | 74.3 |
| Msa1162680 | AT5G65310.2 | 42.857 | 98 | 49 | 1 | 155 | 245 | 51 | 148 | 7.36e-15 | 73.9 |
| Msa1162680 | AT1G27045.5 | 56.061 | 66 | 29 | 0 | 158 | 223 | 25 | 90 | 1.75e-14 | 70.9 |
| Msa1162680 | AT1G27045.3 | 56.061 | 66 | 29 | 0 | 158 | 223 | 25 | 90 | 1.75e-14 | 70.9 |
| Msa1162680 | AT1G27045.2 | 56.061 | 66 | 29 | 0 | 158 | 223 | 17 | 82 | 2.00e-14 | 70.5 |
| Msa1162680 | AT1G27045.1 | 56.061 | 66 | 29 | 0 | 158 | 223 | 68 | 133 | 2.31e-14 | 71.2 |
| Msa1162680 | AT1G27045.4 | 45.098 | 102 | 48 | 2 | 158 | 252 | 68 | 168 | 3.80e-14 | 71.2 |
| Msa1162680 | AT2G18550.1 | 45.361 | 97 | 52 | 1 | 148 | 244 | 52 | 147 | 5.18e-14 | 70.1 |
| Msa1162680 | AT4G40060.1 | 42.857 | 98 | 52 | 1 | 154 | 247 | 55 | 152 | 6.66e-14 | 70.9 |
| Msa1162680 | AT5G03790.2 | 42.045 | 88 | 51 | 0 | 153 | 240 | 72 | 159 | 1.10e-13 | 68.6 |
| Msa1162680 | AT2G46680.2 | 41.758 | 91 | 53 | 0 | 153 | 243 | 27 | 117 | 1.19e-13 | 69.7 |
| Msa1162680 | AT2G46680.1 | 41.758 | 91 | 53 | 0 | 153 | 243 | 27 | 117 | 1.22e-13 | 69.7 |
| Msa1162680 | AT4G36740.1 | 41.837 | 98 | 56 | 1 | 147 | 244 | 45 | 141 | 4.82e-12 | 64.7 |
| Msa1162680 | AT4G36740.2 | 41.837 | 98 | 56 | 1 | 147 | 244 | 46 | 142 | 4.84e-12 | 64.7 |
| Msa1162680 | AT3G61890.1 | 42.169 | 83 | 48 | 0 | 161 | 243 | 33 | 115 | 1.53e-11 | 63.5 |
Find 93 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATCTAAAATAAGAAAAT+TGG | 0.147340 | 7_4:-53439584 | None:intergenic |
| CTCTTCTCGACTACTGTTTC+TGG | 0.172775 | 7_4:-53438135 | None:intergenic |
| CTTCGAATTCCCTGGCTTAA+TGG | 0.240731 | 7_4:+53437736 | Msa1162680:CDS |
| ATAAGAACCGTTGTCATTAT+TGG | 0.263146 | 7_4:-53439470 | None:intergenic |
| ACCAGCGATGATGAAGAAAA+TGG | 0.272695 | 7_4:+53438173 | Msa1162680:CDS |
| TATAGCCAAGGGCAATAATC+TGG | 0.313688 | 7_4:-53439524 | None:intergenic |
| AATATGACGCTGCACTATTC+GGG | 0.319466 | 7_4:-53438067 | None:intergenic |
| CTCTAACAGAAGAAAATAAA+AGG | 0.327202 | 7_4:+53439277 | Msa1162680:CDS |
| CCACGGACGCCAACCGGAAT+TGG | 0.334110 | 7_4:-53438010 | None:intergenic |
| TAATATGACGCTGCACTATT+CGG | 0.334434 | 7_4:-53438068 | None:intergenic |
| GAAGAAACTCAGACTCTCTA+AGG | 0.373372 | 7_4:+53438205 | Msa1162680:CDS |
| TTGTTTAGTGGCAGTGGTTC+CGG | 0.381277 | 7_4:-53439418 | None:intergenic |
| GGAGAAGAGTAGAAAACTAT+AGG | 0.382606 | 7_4:-53437422 | None:intergenic |
| CTCCACTTCTTCGAATTCCC+TGG | 0.385540 | 7_4:+53437728 | Msa1162680:CDS |
| TATCGGATGTGAACCAATTC+CGG | 0.385580 | 7_4:+53437997 | Msa1162680:CDS |
| CACTTCCGTTTGCTTTAACT+TGG | 0.385691 | 7_4:-53439223 | None:intergenic |
| GTCCACGTCAAGTAGAAGTT+TGG | 0.395922 | 7_4:+53439023 | Msa1162680:CDS |
| AATCGAGATGGTTTGTTTAG+TGG | 0.400673 | 7_4:-53439430 | None:intergenic |
| TCATTATTGGCGGTGCCCAC+CGG | 0.402169 | 7_4:-53439457 | None:intergenic |
| ATGGAGCTGGCTTTGAGCTT+AGG | 0.426776 | 7_4:+53437523 | Msa1162680:CDS |
| TATCCTCCACGGACGCCAAC+CGG | 0.430609 | 7_4:-53438016 | None:intergenic |
| CCAATTCCGGTTGGCGTCCG+TGG | 0.435135 | 7_4:+53438010 | Msa1162680:CDS |
| CTATGTGTCCTTCTTGTGAA+AGG | 0.437758 | 7_4:+53439379 | Msa1162680:CDS |
| ATATCTAAAATAAGAAAATT+GGG | 0.440376 | 7_4:-53439583 | None:intergenic |
| GAGTCTGAGTTTCTTCCTTG+TGG | 0.443252 | 7_4:-53438198 | None:intergenic |
| AGAAAATAAAAGGTTACAAA+AGG | 0.465210 | 7_4:+53439287 | Msa1162680:CDS |
| GATGGTTTGTTTAGTGGCAG+TGG | 0.466617 | 7_4:-53439424 | None:intergenic |
| AGTTCAATCACCGATGGAGC+TGG | 0.469281 | 7_4:+53437510 | Msa1162680:exon |
| TTCGAAGAAGTGGAGAAGGC+TGG | 0.476464 | 7_4:-53437720 | None:intergenic |
| GTGGAGAAGGCTGGGAGTGA+AGG | 0.477756 | 7_4:-53437711 | None:intergenic |
| CACATAGTGAGAGTGGTAGC+TGG | 0.479169 | 7_4:-53439363 | None:intergenic |
| CAGAAACAGTAGTCGAGAAG+AGG | 0.481552 | 7_4:+53438136 | Msa1162680:CDS |
| GGCTGCAGTTGGTGTGGAAC+CGG | 0.481908 | 7_4:+53437968 | Msa1162680:intron |
| GAGTGAAGGACCGGTGTTGA+AGG | 0.484612 | 7_4:-53437697 | None:intergenic |
| GGCAGTGGTTCCGGTGGTGT+TGG | 0.486933 | 7_4:-53439409 | None:intergenic |
| TTTACTTGCACCATTAAGCC+AGG | 0.488537 | 7_4:-53437746 | None:intergenic |
| GGAAGAAGATTGAGCTGAAT+GGG | 0.496713 | 7_4:-53437676 | None:intergenic |
| CAAGTTAAAGCAAACGGAAG+TGG | 0.499846 | 7_4:+53439224 | Msa1162680:CDS |
| AGTGGTTCCGGTGGTGTTGG+TGG | 0.508654 | 7_4:-53439406 | None:intergenic |
| CCAGCGATGATGAAGAAAAT+GGG | 0.527273 | 7_4:+53438174 | Msa1162680:CDS |
| AGGAAGAAGATTGAGCTGAA+TGG | 0.527689 | 7_4:-53437677 | None:intergenic |
| AGAACACACCACTCTCAATC+CGG | 0.532530 | 7_4:+53438259 | Msa1162680:CDS |
| CAGGACCAAGTTAAAGCAAA+CGG | 0.533115 | 7_4:+53439218 | Msa1162680:intron |
| TATGTGTCCTTCTTGTGAAA+GGG | 0.534150 | 7_4:+53439380 | Msa1162680:CDS |
| CAATCTTCTTCCTTCAACAC+CGG | 0.539071 | 7_4:+53437687 | Msa1162680:CDS |
| GCAGAAACAGAAACTTGCTC+TGG | 0.539316 | 7_4:+53438982 | Msa1162680:intron |
| AGAACCGTTGTCATTATTGG+CGG | 0.539567 | 7_4:-53439467 | None:intergenic |
| AAGCTCAAAGCCAGCTCCAT+CGG | 0.539731 | 7_4:-53437520 | None:intergenic |
| TCGAAGAAGTGGAGAAGGCT+GGG | 0.542272 | 7_4:-53437719 | None:intergenic |
| AGCCAGGGAATTCGAAGAAG+TGG | 0.543327 | 7_4:-53437730 | None:intergenic |
| GAAGGCTGGGAGTGAAGGAC+CGG | 0.549545 | 7_4:-53437706 | None:intergenic |
| ATCGTTTCTAGTATTCCAAA+GGG | 0.550515 | 7_4:-53437443 | None:intergenic |
| CCGAATTGACCAAACAAAAG+AGG | 0.551105 | 7_4:-53437383 | None:intergenic |
| AACTTTAGTTCAATCACCGA+TGG | 0.551483 | 7_4:+53437504 | Msa1162680:exon |
| ATAGCCAAGGGCAATAATCT+GGG | 0.552582 | 7_4:-53439523 | None:intergenic |
| GAAGCCCAGATTATTGCCCT+TGG | 0.554740 | 7_4:+53439519 | Msa1162680:three_prime_UTR |
| GTGGCGACCCTTTCACAAGA+AGG | 0.556254 | 7_4:-53439387 | None:intergenic |
| AATCGTTTCTAGTATTCCAA+AGG | 0.560250 | 7_4:-53437444 | None:intergenic |
| GCTAAACCGTGTTCTTCAAG+TGG | 0.571158 | 7_4:-53437613 | None:intergenic |
| TAAATTATAGGCTATAGCCA+AGG | 0.572931 | 7_4:-53439536 | None:intergenic |
| AGAAACAGTAGTCGAGAAGA+GGG | 0.577673 | 7_4:+53438137 | Msa1162680:CDS |
| CCCACCGGTGGTAATCGAGA+TGG | 0.582759 | 7_4:-53439442 | None:intergenic |
| AGGGTCGCCACCAACACCAC+CGG | 0.588362 | 7_4:+53439399 | Msa1162680:CDS |
| GCTGGAAGTTGCATGTAGAA+TGG | 0.591856 | 7_4:-53439345 | None:intergenic |
| ACCATCTCGATTACCACCGG+TGG | 0.592762 | 7_4:+53439441 | Msa1162680:CDS |
| GGAATTCGAAGAAGTGGAGA+AGG | 0.592815 | 7_4:-53437724 | None:intergenic |
| AGAAGATTGAGCTGAATGGG+TGG | 0.595515 | 7_4:-53437673 | None:intergenic |
| TTCACATCCGATACTCTCAC+CGG | 0.595525 | 7_4:-53437987 | None:intergenic |
| AGAAGGACACATAGTGAGAG+TGG | 0.600200 | 7_4:-53439370 | None:intergenic |
| TGCAGCGTCATATTATCAGA+TGG | 0.603249 | 7_4:+53438076 | Msa1162680:CDS |
| TATTATTACCGGATTGAGAG+TGG | 0.604923 | 7_4:-53438267 | None:intergenic |
| AACCAAACTTCTACTTGACG+TGG | 0.605331 | 7_4:-53439025 | None:intergenic |
| TTATTGGCGGTGCCCACCGG+TGG | 0.607951 | 7_4:-53439454 | None:intergenic |
| GTTTACGGCTGCAGTTGGTG+TGG | 0.608602 | 7_4:+53437962 | Msa1162680:intron |
| CAGTAGTCGAGAAGAGGGTG+CGG | 0.609350 | 7_4:+53438142 | Msa1162680:CDS |
| GGTTTCAGAATAGAAGAGCA+AGG | 0.612001 | 7_4:+53439044 | Msa1162680:CDS |
| ATGAAGAAAATGGGTCCACA+AGG | 0.617090 | 7_4:+53438183 | Msa1162680:CDS |
| AAATTATAGGCTATAGCCAA+GGG | 0.622732 | 7_4:-53439535 | None:intergenic |
| GAGCTGAATGGGTGGATCTG+AGG | 0.625502 | 7_4:-53437665 | None:intergenic |
| TGTGGAACCGGTGAGAGTAT+CGG | 0.632478 | 7_4:+53437980 | Msa1162680:CDS |
| ATTCCGGTTGGCGTCCGTGG+AGG | 0.636105 | 7_4:+53438013 | Msa1162680:CDS |
| ATATGACGCTGCACTATTCG+GGG | 0.636746 | 7_4:-53438066 | None:intergenic |
| CCATCTCGATTACCACCGGT+GGG | 0.643789 | 7_4:+53439442 | Msa1162680:CDS |
| TGCATACCACTTGAAGAACA+CGG | 0.644956 | 7_4:+53437607 | Msa1162680:CDS |
| CAAACCATCTCGATTACCAC+CGG | 0.647502 | 7_4:+53439438 | Msa1162680:CDS |
| TGAAACTGCAGCTCCCTCGT+CGG | 0.652204 | 7_4:-53438042 | None:intergenic |
| GGATGTGAACCAATTCCGGT+TGG | 0.657900 | 7_4:+53438001 | Msa1162680:CDS |
| TTTAGTGGCAGTGGTTCCGG+TGG | 0.663174 | 7_4:-53439415 | None:intergenic |
| TTACTTGCACCATTAAGCCA+GGG | 0.674390 | 7_4:-53437745 | None:intergenic |
| GGCACCGCCAATAATGACAA+CGG | 0.678892 | 7_4:+53439463 | Msa1162680:exon |
| CTCGTCGGTAGTATCCTCCA+CGG | 0.686078 | 7_4:-53438027 | None:intergenic |
| CGTGGAGGATACTACCGACG+AGG | 0.692188 | 7_4:+53438028 | Msa1162680:CDS |
| GTGGAGGATACTACCGACGA+GGG | 0.757148 | 7_4:+53438029 | Msa1162680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAATAAATATTGTTATTTT+AGG | + | chr7_4:53438927-53438946 | Msa1162680:intron | 10.0% |
| !!! | ATGTTTTTCATTTTTTTATT+AGG | - | chr7_4:53439192-53439211 | None:intergenic | 10.0% |
| !!! | ATATCTAAAATAAGAAAATT+GGG | - | chr7_4:53439586-53439605 | None:intergenic | 10.0% |
| !!! | TATATCTAAAATAAGAAAAT+TGG | - | chr7_4:53439587-53439606 | None:intergenic | 10.0% |
| !!! | GAAATAAATATTGTTATTTT+AGG | + | chr7_4:53438927-53438946 | Msa1162680:intron | 10.0% |
| !!! | ATGTTTTTCATTTTTTTATT+AGG | - | chr7_4:53439192-53439211 | None:intergenic | 10.0% |
| !!! | ATATCTAAAATAAGAAAATT+GGG | - | chr7_4:53439586-53439605 | None:intergenic | 10.0% |
| !!! | TATATCTAAAATAAGAAAAT+TGG | - | chr7_4:53439587-53439606 | None:intergenic | 10.0% |
| !! | TATAGTTACTTAAAAAATAG+GGG | - | chr7_4:53437929-53437948 | None:intergenic | 15.0% |
| !! | GTATAGTTACTTAAAAAATA+GGG | - | chr7_4:53437930-53437949 | None:intergenic | 15.0% |
| !! | AGTATAGTTACTTAAAAAAT+AGG | - | chr7_4:53437931-53437950 | None:intergenic | 15.0% |
| !! | TAACTAAATAATCATTTAAC+TGG | - | chr7_4:53438597-53438616 | None:intergenic | 15.0% |
| !! | TAACTAAATAATCATTTAAC+TGG | - | chr7_4:53438597-53438616 | None:intergenic | 15.0% |
| !! | TGAAAAATCTGATAAATTAT+AGG | - | chr7_4:53439551-53439570 | None:intergenic | 15.0% |
| !! | TATAGTTACTTAAAAAATAG+GGG | - | chr7_4:53437929-53437948 | None:intergenic | 15.0% |
| !! | GTATAGTTACTTAAAAAATA+GGG | - | chr7_4:53437930-53437949 | None:intergenic | 15.0% |
| !! | AGTATAGTTACTTAAAAAAT+AGG | - | chr7_4:53437931-53437950 | None:intergenic | 15.0% |
| !! | TAACTAAATAATCATTTAAC+TGG | - | chr7_4:53438597-53438616 | None:intergenic | 15.0% |
| !! | TAACTAAATAATCATTTAAC+TGG | - | chr7_4:53438597-53438616 | None:intergenic | 15.0% |
| !! | TGAAAAATCTGATAAATTAT+AGG | - | chr7_4:53439551-53439570 | None:intergenic | 15.0% |
| !!! | GAAAACTATAGGTTTTTAAA+AGG | - | chr7_4:53437414-53437433 | None:intergenic | 20.0% |
| !! | TACTTATATGTGTATGTTTA+CGG | + | chr7_4:53437947-53437966 | Msa1162680:intron | 20.0% |
| !!! | TGTTTCTAAAAATTTTGTGT+AGG | - | chr7_4:53438401-53438420 | None:intergenic | 20.0% |
| !!! | AAATAATTTGTGATAAGTGT+GGG | - | chr7_4:53438481-53438500 | None:intergenic | 20.0% |
| !!! | ATCACAAATTATTTCTCTTT+TGG | + | chr7_4:53438487-53438506 | Msa1162680:intron | 20.0% |
| !! | TATAATATAAAAAATCGCAG+AGG | + | chr7_4:53438789-53438808 | Msa1162680:intron | 20.0% |
| !! | AAATGAAAAACATAATGTAC+AGG | + | chr7_4:53439199-53439218 | Msa1162680:intron | 20.0% |
| !! | AGAAAATAAAAGGTTACAAA+AGG | + | chr7_4:53439287-53439306 | Msa1162680:CDS | 20.0% |
| !! | CGTAACAAAAAAAAAAAAAG+TGG | + | chr7_4:53439636-53439655 | Msa1162680:three_prime_UTR | 20.0% |
| !!! | GAAAACTATAGGTTTTTAAA+AGG | - | chr7_4:53437414-53437433 | None:intergenic | 20.0% |
| !! | TACTTATATGTGTATGTTTA+CGG | + | chr7_4:53437947-53437966 | Msa1162680:intron | 20.0% |
| !!! | TGTTTCTAAAAATTTTGTGT+AGG | - | chr7_4:53438401-53438420 | None:intergenic | 20.0% |
| !!! | AAATAATTTGTGATAAGTGT+GGG | - | chr7_4:53438481-53438500 | None:intergenic | 20.0% |
| !!! | ATCACAAATTATTTCTCTTT+TGG | + | chr7_4:53438487-53438506 | Msa1162680:intron | 20.0% |
| !! | TATAATATAAAAAATCGCAG+AGG | + | chr7_4:53438789-53438808 | Msa1162680:intron | 20.0% |
| !! | AAATGAAAAACATAATGTAC+AGG | + | chr7_4:53439199-53439218 | Msa1162680:intron | 20.0% |
| !! | AGAAAATAAAAGGTTACAAA+AGG | + | chr7_4:53439287-53439306 | Msa1162680:CDS | 20.0% |
| !! | CGTAACAAAAAAAAAAAAAG+TGG | + | chr7_4:53439636-53439655 | Msa1162680:three_prime_UTR | 20.0% |
| !!! | TTTTTTTTTGCTATGCTATG+AGG | - | chr7_4:53437486-53437505 | None:intergenic | 25.0% |
| !! | TCAAACAAAGAGAATGTTTT+CGG | - | chr7_4:53437556-53437575 | None:intergenic | 25.0% |
| !! | TTTTGTTGGGTAATTTTGTA+GGG | - | chr7_4:53437582-53437601 | None:intergenic | 25.0% |
| !! | ATGGATTTTTCTATCATGAA+TGG | + | chr7_4:53438095-53438114 | Msa1162680:CDS | 25.0% |
| !! | TTTTCTATCATGAATGGTAA+TGG | + | chr7_4:53438101-53438120 | Msa1162680:CDS | 25.0% |
| ! | AAATGAAATGTTGTTAGAGA+GGG | - | chr7_4:53438296-53438315 | None:intergenic | 25.0% |
| !! | GATTTTTATCATGCAATACA+TGG | + | chr7_4:53438347-53438366 | Msa1162680:intron | 25.0% |
| !! | GAAATAATTTGTGATAAGTG+TGG | - | chr7_4:53438482-53438501 | None:intergenic | 25.0% |
| ! | AGATATATGATGATATGTGT+GGG | - | chr7_4:53438513-53438532 | None:intergenic | 25.0% |
| !! | GCAGAGGATAATTTTATATA+TGG | + | chr7_4:53438805-53438824 | Msa1162680:intron | 25.0% |
| !! | ATCCAGAATTTTTGAATAGT+GGG | - | chr7_4:53438835-53438854 | None:intergenic | 25.0% |
| !! | ATTATCTTTTCTGTGTTATG+AGG | + | chr7_4:53439080-53439099 | Msa1162680:intron | 25.0% |
| ! | CTCTAACAGAAGAAAATAAA+AGG | + | chr7_4:53439277-53439296 | Msa1162680:CDS | 25.0% |
| ! | AAAAAGTGGTAATATCAAAG+AGG | + | chr7_4:53439650-53439669 | Msa1162680:three_prime_UTR | 25.0% |
| !!! | TTTTTTTTTGCTATGCTATG+AGG | - | chr7_4:53437486-53437505 | None:intergenic | 25.0% |
| !! | TCAAACAAAGAGAATGTTTT+CGG | - | chr7_4:53437556-53437575 | None:intergenic | 25.0% |
| !! | TTTTGTTGGGTAATTTTGTA+GGG | - | chr7_4:53437582-53437601 | None:intergenic | 25.0% |
| !! | ATGGATTTTTCTATCATGAA+TGG | + | chr7_4:53438095-53438114 | Msa1162680:CDS | 25.0% |
| !! | TTTTCTATCATGAATGGTAA+TGG | + | chr7_4:53438101-53438120 | Msa1162680:CDS | 25.0% |
| ! | AAATGAAATGTTGTTAGAGA+GGG | - | chr7_4:53438296-53438315 | None:intergenic | 25.0% |
| !! | GATTTTTATCATGCAATACA+TGG | + | chr7_4:53438347-53438366 | Msa1162680:intron | 25.0% |
| !! | GAAATAATTTGTGATAAGTG+TGG | - | chr7_4:53438482-53438501 | None:intergenic | 25.0% |
| ! | AGATATATGATGATATGTGT+GGG | - | chr7_4:53438513-53438532 | None:intergenic | 25.0% |
| !! | GCAGAGGATAATTTTATATA+TGG | + | chr7_4:53438805-53438824 | Msa1162680:intron | 25.0% |
| !! | ATCCAGAATTTTTGAATAGT+GGG | - | chr7_4:53438835-53438854 | None:intergenic | 25.0% |
| !! | ATTATCTTTTCTGTGTTATG+AGG | + | chr7_4:53439080-53439099 | Msa1162680:intron | 25.0% |
| ! | CTCTAACAGAAGAAAATAAA+AGG | + | chr7_4:53439277-53439296 | Msa1162680:CDS | 25.0% |
| ! | AAAAAGTGGTAATATCAAAG+AGG | + | chr7_4:53439650-53439669 | Msa1162680:three_prime_UTR | 25.0% |
| !! | ATCGTTTCTAGTATTCCAAA+GGG | - | chr7_4:53437446-53437465 | None:intergenic | 30.0% |
| !! | AATCGTTTCTAGTATTCCAA+AGG | - | chr7_4:53437447-53437466 | None:intergenic | 30.0% |
| !! | GTTTTGTTGGGTAATTTTGT+AGG | - | chr7_4:53437583-53437602 | None:intergenic | 30.0% |
| !!! | GGAATCACTTTTTTGGTTTA+AGG | - | chr7_4:53437647-53437666 | None:intergenic | 30.0% |
| TTTGTCTATACAAAACTACG+AGG | - | chr7_4:53437785-53437804 | None:intergenic | 30.0% | |
| CAAATGAAATGTTGTTAGAG+AGG | - | chr7_4:53438297-53438316 | None:intergenic | 30.0% | |
| ! | TTTTATCATGCAATACATGG+AGG | + | chr7_4:53438350-53438369 | Msa1162680:intron | 30.0% |
| GAGATATATGATGATATGTG+TGG | - | chr7_4:53438514-53438533 | None:intergenic | 30.0% | |
| ATCAAATGTTAAATCGTGAG+AGG | + | chr7_4:53438682-53438701 | Msa1162680:intron | 30.0% | |
| ! | TCCAGAATTTTTGAATAGTG+GGG | - | chr7_4:53438834-53438853 | None:intergenic | 30.0% |
| ! | GATCCAGAATTTTTGAATAG+TGG | - | chr7_4:53438836-53438855 | None:intergenic | 30.0% |
| ATAAGAACCGTTGTCATTAT+TGG | - | chr7_4:53439473-53439492 | None:intergenic | 30.0% | |
| AAATTATAGGCTATAGCCAA+GGG | - | chr7_4:53439538-53439557 | None:intergenic | 30.0% | |
| TAAATTATAGGCTATAGCCA+AGG | - | chr7_4:53439539-53439558 | None:intergenic | 30.0% | |
| !! | ATCGTTTCTAGTATTCCAAA+GGG | - | chr7_4:53437446-53437465 | None:intergenic | 30.0% |
| !! | AATCGTTTCTAGTATTCCAA+AGG | - | chr7_4:53437447-53437466 | None:intergenic | 30.0% |
| !! | GTTTTGTTGGGTAATTTTGT+AGG | - | chr7_4:53437583-53437602 | None:intergenic | 30.0% |
| !!! | GGAATCACTTTTTTGGTTTA+AGG | - | chr7_4:53437647-53437666 | None:intergenic | 30.0% |
| TTTGTCTATACAAAACTACG+AGG | - | chr7_4:53437785-53437804 | None:intergenic | 30.0% | |
| CAAATGAAATGTTGTTAGAG+AGG | - | chr7_4:53438297-53438316 | None:intergenic | 30.0% | |
| ! | TTTTATCATGCAATACATGG+AGG | + | chr7_4:53438350-53438369 | Msa1162680:intron | 30.0% |
| GAGATATATGATGATATGTG+TGG | - | chr7_4:53438514-53438533 | None:intergenic | 30.0% | |
| ATCAAATGTTAAATCGTGAG+AGG | + | chr7_4:53438682-53438701 | Msa1162680:intron | 30.0% | |
| ! | TCCAGAATTTTTGAATAGTG+GGG | - | chr7_4:53438834-53438853 | None:intergenic | 30.0% |
| ! | GATCCAGAATTTTTGAATAG+TGG | - | chr7_4:53438836-53438855 | None:intergenic | 30.0% |
| ATAAGAACCGTTGTCATTAT+TGG | - | chr7_4:53439473-53439492 | None:intergenic | 30.0% | |
| AAATTATAGGCTATAGCCAA+GGG | - | chr7_4:53439538-53439557 | None:intergenic | 30.0% | |
| TAAATTATAGGCTATAGCCA+AGG | - | chr7_4:53439539-53439558 | None:intergenic | 30.0% | |
| !! | CTCTTTTGTTTGGTCAATTC+GGG | + | chr7_4:53437384-53437403 | Msa1162680:five_prime_UTR | 35.0% |
| GGAGAAGAGTAGAAAACTAT+AGG | - | chr7_4:53437425-53437444 | None:intergenic | 35.0% | |
| ! | AACTTTAGTTCAATCACCGA+TGG | + | chr7_4:53437504-53437523 | Msa1162680:exon | 35.0% |
| !!! | GGTATGCAGAAAGTTTTGTT+GGG | - | chr7_4:53437595-53437614 | None:intergenic | 35.0% |
| !! | TGGTATGCAGAAAGTTTTGT+TGG | - | chr7_4:53437596-53437615 | None:intergenic | 35.0% |
| !!! | GATCTGAGGAATCACTTTTT+TGG | - | chr7_4:53437654-53437673 | None:intergenic | 35.0% |
| AAAACTACGAGGAAACAAGA+GGG | - | chr7_4:53437774-53437793 | None:intergenic | 35.0% | |
| TAATATGACGCTGCACTATT+CGG | - | chr7_4:53438071-53438090 | None:intergenic | 35.0% | |
| TATTATTACCGGATTGAGAG+TGG | - | chr7_4:53438270-53438289 | None:intergenic | 35.0% | |
| !! | AGAGAGGGTGTTATTATTAC+CGG | - | chr7_4:53438281-53438300 | None:intergenic | 35.0% |
| ATCAAATGTGAAATCGTGAG+AGG | + | chr7_4:53438568-53438587 | Msa1162680:intron | 35.0% | |
| ! | CCAGAATTTTTGAATAGTGG+GGG | - | chr7_4:53438833-53438852 | None:intergenic | 35.0% |
| !! | GTTTCTGTTTCTGCAGATTT+GGG | - | chr7_4:53438976-53438995 | None:intergenic | 35.0% |
| !! | AGTTTCTGTTTCTGCAGATT+TGG | - | chr7_4:53438977-53438996 | None:intergenic | 35.0% |
| ATAGAAGAGCAAGGTAACTA+AGG | + | chr7_4:53439053-53439072 | Msa1162680:intron | 35.0% | |
| TAGAAGAGCAAGGTAACTAA+GGG | + | chr7_4:53439054-53439073 | Msa1162680:intron | 35.0% | |
| TATGTGTCCTTCTTGTGAAA+GGG | + | chr7_4:53439380-53439399 | Msa1162680:CDS | 35.0% | |
| !! | AATCGAGATGGTTTGTTTAG+TGG | - | chr7_4:53439433-53439452 | None:intergenic | 35.0% |
| GAATTGACCAAACAAAAGAG+GGG | - | chr7_4:53437384-53437403 | None:intergenic | 35.0% | |
| CGAATTGACCAAACAAAAGA+GGG | - | chr7_4:53437385-53437404 | None:intergenic | 35.0% | |
| !! | CTCTTTTGTTTGGTCAATTC+GGG | + | chr7_4:53437384-53437403 | Msa1162680:five_prime_UTR | 35.0% |
| GGAGAAGAGTAGAAAACTAT+AGG | - | chr7_4:53437425-53437444 | None:intergenic | 35.0% | |
| ! | AACTTTAGTTCAATCACCGA+TGG | + | chr7_4:53437504-53437523 | Msa1162680:exon | 35.0% |
| !!! | GGTATGCAGAAAGTTTTGTT+GGG | - | chr7_4:53437595-53437614 | None:intergenic | 35.0% |
| !! | TGGTATGCAGAAAGTTTTGT+TGG | - | chr7_4:53437596-53437615 | None:intergenic | 35.0% |
| !!! | GATCTGAGGAATCACTTTTT+TGG | - | chr7_4:53437654-53437673 | None:intergenic | 35.0% |
| AAAACTACGAGGAAACAAGA+GGG | - | chr7_4:53437774-53437793 | None:intergenic | 35.0% | |
| TAATATGACGCTGCACTATT+CGG | - | chr7_4:53438071-53438090 | None:intergenic | 35.0% | |
| TATTATTACCGGATTGAGAG+TGG | - | chr7_4:53438270-53438289 | None:intergenic | 35.0% | |
| !! | AGAGAGGGTGTTATTATTAC+CGG | - | chr7_4:53438281-53438300 | None:intergenic | 35.0% |
| ATCAAATGTGAAATCGTGAG+AGG | + | chr7_4:53438568-53438587 | Msa1162680:intron | 35.0% | |
| ! | CCAGAATTTTTGAATAGTGG+GGG | - | chr7_4:53438833-53438852 | None:intergenic | 35.0% |
| !! | GTTTCTGTTTCTGCAGATTT+GGG | - | chr7_4:53438976-53438995 | None:intergenic | 35.0% |
| !! | AGTTTCTGTTTCTGCAGATT+TGG | - | chr7_4:53438977-53438996 | None:intergenic | 35.0% |
| ATAGAAGAGCAAGGTAACTA+AGG | + | chr7_4:53439053-53439072 | Msa1162680:intron | 35.0% | |
| TAGAAGAGCAAGGTAACTAA+GGG | + | chr7_4:53439054-53439073 | Msa1162680:intron | 35.0% | |
| TATGTGTCCTTCTTGTGAAA+GGG | + | chr7_4:53439380-53439399 | Msa1162680:CDS | 35.0% | |
| !! | AATCGAGATGGTTTGTTTAG+TGG | - | chr7_4:53439433-53439452 | None:intergenic | 35.0% |
| ! | GTTTTCTACTCTTCTCCCTT+TGG | + | chr7_4:53437428-53437447 | Msa1162680:five_prime_UTR | 40.0% |
| TGCATACCACTTGAAGAACA+CGG | + | chr7_4:53437607-53437626 | Msa1162680:CDS | 40.0% | |
| GGAAGAAGATTGAGCTGAAT+GGG | - | chr7_4:53437679-53437698 | None:intergenic | 40.0% | |
| AGGAAGAAGATTGAGCTGAA+TGG | - | chr7_4:53437680-53437699 | None:intergenic | 40.0% | |
| CAATCTTCTTCCTTCAACAC+CGG | + | chr7_4:53437687-53437706 | Msa1162680:CDS | 40.0% | |
| TTACTTGCACCATTAAGCCA+GGG | - | chr7_4:53437748-53437767 | None:intergenic | 40.0% | |
| TTTACTTGCACCATTAAGCC+AGG | - | chr7_4:53437749-53437768 | None:intergenic | 40.0% | |
| CAAAACTACGAGGAAACAAG+AGG | - | chr7_4:53437775-53437794 | None:intergenic | 40.0% | |
| TATCGGATGTGAACCAATTC+CGG | + | chr7_4:53437997-53438016 | Msa1162680:CDS | 40.0% | |
| AATATGACGCTGCACTATTC+GGG | - | chr7_4:53438070-53438089 | None:intergenic | 40.0% | |
| TGCAGCGTCATATTATCAGA+TGG | + | chr7_4:53438076-53438095 | Msa1162680:CDS | 40.0% | |
| AGAAACAGTAGTCGAGAAGA+GGG | + | chr7_4:53438137-53438156 | Msa1162680:CDS | 40.0% | |
| ACCAGCGATGATGAAGAAAA+TGG | + | chr7_4:53438173-53438192 | Msa1162680:CDS | 40.0% | |
| CCAGCGATGATGAAGAAAAT+GGG | + | chr7_4:53438174-53438193 | Msa1162680:CDS | 40.0% | |
| ATGAAGAAAATGGGTCCACA+AGG | + | chr7_4:53438183-53438202 | Msa1162680:CDS | 40.0% | |
| GAAGAAACTCAGACTCTCTA+AGG | + | chr7_4:53438205-53438224 | Msa1162680:CDS | 40.0% | |
| ATGGAGGAAAAACCTTCAAG+TGG | + | chr7_4:53438366-53438385 | Msa1162680:intron | 40.0% | |
| TGGAGGAAAAACCTTCAAGT+GGG | + | chr7_4:53438367-53438386 | Msa1162680:intron | 40.0% | |
| TGTGATAAGTGTGGGTCATA+TGG | - | chr7_4:53438473-53438492 | None:intergenic | 40.0% | |
| CCCCCACTATTCAAAAATTC+TGG | + | chr7_4:53438830-53438849 | Msa1162680:intron | 40.0% | |
| AACCAAACTTCTACTTGACG+TGG | - | chr7_4:53439028-53439047 | None:intergenic | 40.0% | |
| GGTTTCAGAATAGAAGAGCA+AGG | + | chr7_4:53439044-53439063 | Msa1162680:CDS | 40.0% | |
| CAGGACCAAGTTAAAGCAAA+CGG | + | chr7_4:53439218-53439237 | Msa1162680:intron | 40.0% | |
| CACTTCCGTTTGCTTTAACT+TGG | - | chr7_4:53439226-53439245 | None:intergenic | 40.0% | |
| CAAGTTAAAGCAAACGGAAG+TGG | + | chr7_4:53439224-53439243 | Msa1162680:CDS | 40.0% | |
| CTATGTGTCCTTCTTGTGAA+AGG | + | chr7_4:53439379-53439398 | Msa1162680:CDS | 40.0% | |
| AGAACCGTTGTCATTATTGG+CGG | - | chr7_4:53439470-53439489 | None:intergenic | 40.0% | |
| ATAGCCAAGGGCAATAATCT+GGG | - | chr7_4:53439526-53439545 | None:intergenic | 40.0% | |
| TATAGCCAAGGGCAATAATC+TGG | - | chr7_4:53439527-53439546 | None:intergenic | 40.0% | |
| CCGAATTGACCAAACAAAAG+AGG | - | chr7_4:53437386-53437405 | None:intergenic | 40.0% | |
| ! | GTTTTCTACTCTTCTCCCTT+TGG | + | chr7_4:53437428-53437447 | Msa1162680:five_prime_UTR | 40.0% |
| TGCATACCACTTGAAGAACA+CGG | + | chr7_4:53437607-53437626 | Msa1162680:CDS | 40.0% | |
| GGAAGAAGATTGAGCTGAAT+GGG | - | chr7_4:53437679-53437698 | None:intergenic | 40.0% | |
| AGGAAGAAGATTGAGCTGAA+TGG | - | chr7_4:53437680-53437699 | None:intergenic | 40.0% | |
| CAATCTTCTTCCTTCAACAC+CGG | + | chr7_4:53437687-53437706 | Msa1162680:CDS | 40.0% | |
| TTACTTGCACCATTAAGCCA+GGG | - | chr7_4:53437748-53437767 | None:intergenic | 40.0% | |
| TTTACTTGCACCATTAAGCC+AGG | - | chr7_4:53437749-53437768 | None:intergenic | 40.0% | |
| CAAAACTACGAGGAAACAAG+AGG | - | chr7_4:53437775-53437794 | None:intergenic | 40.0% | |
| TATCGGATGTGAACCAATTC+CGG | + | chr7_4:53437997-53438016 | Msa1162680:CDS | 40.0% | |
| AATATGACGCTGCACTATTC+GGG | - | chr7_4:53438070-53438089 | None:intergenic | 40.0% | |
| TGCAGCGTCATATTATCAGA+TGG | + | chr7_4:53438076-53438095 | Msa1162680:CDS | 40.0% | |
| AGAAACAGTAGTCGAGAAGA+GGG | + | chr7_4:53438137-53438156 | Msa1162680:CDS | 40.0% | |
| ACCAGCGATGATGAAGAAAA+TGG | + | chr7_4:53438173-53438192 | Msa1162680:CDS | 40.0% | |
| CCAGCGATGATGAAGAAAAT+GGG | + | chr7_4:53438174-53438193 | Msa1162680:CDS | 40.0% | |
| ATGAAGAAAATGGGTCCACA+AGG | + | chr7_4:53438183-53438202 | Msa1162680:CDS | 40.0% | |
| GAAGAAACTCAGACTCTCTA+AGG | + | chr7_4:53438205-53438224 | Msa1162680:CDS | 40.0% | |
| ATGGAGGAAAAACCTTCAAG+TGG | + | chr7_4:53438366-53438385 | Msa1162680:intron | 40.0% | |
| TGGAGGAAAAACCTTCAAGT+GGG | + | chr7_4:53438367-53438386 | Msa1162680:intron | 40.0% | |
| TGTGATAAGTGTGGGTCATA+TGG | - | chr7_4:53438473-53438492 | None:intergenic | 40.0% | |
| CCCCCACTATTCAAAAATTC+TGG | + | chr7_4:53438830-53438849 | Msa1162680:intron | 40.0% | |
| AACCAAACTTCTACTTGACG+TGG | - | chr7_4:53439028-53439047 | None:intergenic | 40.0% | |
| GGTTTCAGAATAGAAGAGCA+AGG | + | chr7_4:53439044-53439063 | Msa1162680:CDS | 40.0% | |
| CAGGACCAAGTTAAAGCAAA+CGG | + | chr7_4:53439218-53439237 | Msa1162680:intron | 40.0% | |
| CACTTCCGTTTGCTTTAACT+TGG | - | chr7_4:53439226-53439245 | None:intergenic | 40.0% | |
| CAAGTTAAAGCAAACGGAAG+TGG | + | chr7_4:53439224-53439243 | Msa1162680:CDS | 40.0% | |
| CTATGTGTCCTTCTTGTGAA+AGG | + | chr7_4:53439379-53439398 | Msa1162680:CDS | 40.0% | |
| AGAACCGTTGTCATTATTGG+CGG | - | chr7_4:53439470-53439489 | None:intergenic | 40.0% | |
| ATAGCCAAGGGCAATAATCT+GGG | - | chr7_4:53439526-53439545 | None:intergenic | 40.0% | |
| TATAGCCAAGGGCAATAATC+TGG | - | chr7_4:53439527-53439546 | None:intergenic | 40.0% | |
| GCTAAACCGTGTTCTTCAAG+TGG | - | chr7_4:53437616-53437635 | None:intergenic | 45.0% | |
| AGAAGATTGAGCTGAATGGG+TGG | - | chr7_4:53437676-53437695 | None:intergenic | 45.0% | |
| GGAATTCGAAGAAGTGGAGA+AGG | - | chr7_4:53437727-53437746 | None:intergenic | 45.0% | |
| CTTCGAATTCCCTGGCTTAA+TGG | + | chr7_4:53437736-53437755 | Msa1162680:CDS | 45.0% | |
| TGTATGTTTACGGCTGCAGT+TGG | + | chr7_4:53437957-53437976 | Msa1162680:intron | 45.0% | |
| TTCACATCCGATACTCTCAC+CGG | - | chr7_4:53437990-53438009 | None:intergenic | 45.0% | |
| ATATGACGCTGCACTATTCG+GGG | - | chr7_4:53438069-53438088 | None:intergenic | 45.0% | |
| CTCTTCTCGACTACTGTTTC+TGG | - | chr7_4:53438138-53438157 | None:intergenic | 45.0% | |
| CAGAAACAGTAGTCGAGAAG+AGG | + | chr7_4:53438136-53438155 | Msa1162680:CDS | 45.0% | |
| ! | CCCATTTTCTTCATCATCGC+TGG | - | chr7_4:53438177-53438196 | None:intergenic | 45.0% |
| GAGTCTGAGTTTCTTCCTTG+TGG | - | chr7_4:53438201-53438220 | None:intergenic | 45.0% | |
| AGAACACACCACTCTCAATC+CGG | + | chr7_4:53438259-53438278 | Msa1162680:CDS | 45.0% | |
| GGAGGAAAAACCTTCAAGTG+GGG | + | chr7_4:53438368-53438387 | Msa1162680:intron | 45.0% | |
| GAGGAAAAACCTTCAAGTGG+GGG | + | chr7_4:53438369-53438388 | Msa1162680:intron | 45.0% | |
| ! | GCAGAAACAGAAACTTGCTC+TGG | + | chr7_4:53438982-53439001 | Msa1162680:intron | 45.0% |
| GTCCACGTCAAGTAGAAGTT+TGG | + | chr7_4:53439023-53439042 | Msa1162680:CDS | 45.0% | |
| GCTGGAAGTTGCATGTAGAA+TGG | - | chr7_4:53439348-53439367 | None:intergenic | 45.0% | |
| AGAAGGACACATAGTGAGAG+TGG | - | chr7_4:53439373-53439392 | None:intergenic | 45.0% | |
| TTGTTTAGTGGCAGTGGTTC+CGG | - | chr7_4:53439421-53439440 | None:intergenic | 45.0% | |
| !! | GATGGTTTGTTTAGTGGCAG+TGG | - | chr7_4:53439427-53439446 | None:intergenic | 45.0% |
| CAAACCATCTCGATTACCAC+CGG | + | chr7_4:53439438-53439457 | Msa1162680:CDS | 45.0% | |
| GCTAAACCGTGTTCTTCAAG+TGG | - | chr7_4:53437616-53437635 | None:intergenic | 45.0% | |
| AGAAGATTGAGCTGAATGGG+TGG | - | chr7_4:53437676-53437695 | None:intergenic | 45.0% | |
| GGAATTCGAAGAAGTGGAGA+AGG | - | chr7_4:53437727-53437746 | None:intergenic | 45.0% | |
| CTTCGAATTCCCTGGCTTAA+TGG | + | chr7_4:53437736-53437755 | Msa1162680:CDS | 45.0% | |
| TGTATGTTTACGGCTGCAGT+TGG | + | chr7_4:53437957-53437976 | Msa1162680:intron | 45.0% | |
| TTCACATCCGATACTCTCAC+CGG | - | chr7_4:53437990-53438009 | None:intergenic | 45.0% | |
| ATATGACGCTGCACTATTCG+GGG | - | chr7_4:53438069-53438088 | None:intergenic | 45.0% | |
| CTCTTCTCGACTACTGTTTC+TGG | - | chr7_4:53438138-53438157 | None:intergenic | 45.0% | |
| CAGAAACAGTAGTCGAGAAG+AGG | + | chr7_4:53438136-53438155 | Msa1162680:CDS | 45.0% | |
| ! | CCCATTTTCTTCATCATCGC+TGG | - | chr7_4:53438177-53438196 | None:intergenic | 45.0% |
| GAGTCTGAGTTTCTTCCTTG+TGG | - | chr7_4:53438201-53438220 | None:intergenic | 45.0% | |
| AGAACACACCACTCTCAATC+CGG | + | chr7_4:53438259-53438278 | Msa1162680:CDS | 45.0% | |
| GGAGGAAAAACCTTCAAGTG+GGG | + | chr7_4:53438368-53438387 | Msa1162680:intron | 45.0% | |
| GAGGAAAAACCTTCAAGTGG+GGG | + | chr7_4:53438369-53438388 | Msa1162680:intron | 45.0% | |
| ! | GCAGAAACAGAAACTTGCTC+TGG | + | chr7_4:53438982-53439001 | Msa1162680:intron | 45.0% |
| GTCCACGTCAAGTAGAAGTT+TGG | + | chr7_4:53439023-53439042 | Msa1162680:CDS | 45.0% | |
| GCTGGAAGTTGCATGTAGAA+TGG | - | chr7_4:53439348-53439367 | None:intergenic | 45.0% | |
| AGAAGGACACATAGTGAGAG+TGG | - | chr7_4:53439373-53439392 | None:intergenic | 45.0% | |
| TTGTTTAGTGGCAGTGGTTC+CGG | - | chr7_4:53439421-53439440 | None:intergenic | 45.0% | |
| !! | GATGGTTTGTTTAGTGGCAG+TGG | - | chr7_4:53439427-53439446 | None:intergenic | 45.0% |
| CAAACCATCTCGATTACCAC+CGG | + | chr7_4:53439438-53439457 | Msa1162680:CDS | 45.0% | |
| !! | AAATAAACAAAATAAATATT+TGG | - | chr7_4:53439126-53439145 | None:intergenic | 5.0% |
| !! | AAATAAACAAAATAAATATT+TGG | - | chr7_4:53439126-53439145 | None:intergenic | 5.0% |
| AGTTCAATCACCGATGGAGC+TGG | + | chr7_4:53437510-53437529 | Msa1162680:exon | 50.0% | |
| AAGCTCAAAGCCAGCTCCAT+CGG | - | chr7_4:53437523-53437542 | None:intergenic | 50.0% | |
| !! | ATGGAGCTGGCTTTGAGCTT+AGG | + | chr7_4:53437523-53437542 | Msa1162680:CDS | 50.0% |
| TCGAAGAAGTGGAGAAGGCT+GGG | - | chr7_4:53437722-53437741 | None:intergenic | 50.0% | |
| TTCGAAGAAGTGGAGAAGGC+TGG | - | chr7_4:53437723-53437742 | None:intergenic | 50.0% | |
| CTCCACTTCTTCGAATTCCC+TGG | + | chr7_4:53437728-53437747 | Msa1162680:CDS | 50.0% | |
| AGCCAGGGAATTCGAAGAAG+TGG | - | chr7_4:53437733-53437752 | None:intergenic | 50.0% | |
| ! | TGTGGAACCGGTGAGAGTAT+CGG | + | chr7_4:53437980-53437999 | Msa1162680:CDS | 50.0% |
| GGATGTGAACCAATTCCGGT+TGG | + | chr7_4:53438001-53438020 | Msa1162680:CDS | 50.0% | |
| CACATAGTGAGAGTGGTAGC+TGG | - | chr7_4:53439366-53439385 | None:intergenic | 50.0% | |
| GGCACCGCCAATAATGACAA+CGG | + | chr7_4:53439463-53439482 | Msa1162680:exon | 50.0% | |
| GAAGCCCAGATTATTGCCCT+TGG | + | chr7_4:53439519-53439538 | Msa1162680:three_prime_UTR | 50.0% | |
| AGTTCAATCACCGATGGAGC+TGG | + | chr7_4:53437510-53437529 | Msa1162680:exon | 50.0% | |
| AAGCTCAAAGCCAGCTCCAT+CGG | - | chr7_4:53437523-53437542 | None:intergenic | 50.0% | |
| !! | ATGGAGCTGGCTTTGAGCTT+AGG | + | chr7_4:53437523-53437542 | Msa1162680:CDS | 50.0% |
| TCGAAGAAGTGGAGAAGGCT+GGG | - | chr7_4:53437722-53437741 | None:intergenic | 50.0% | |
| TTCGAAGAAGTGGAGAAGGC+TGG | - | chr7_4:53437723-53437742 | None:intergenic | 50.0% | |
| CTCCACTTCTTCGAATTCCC+TGG | + | chr7_4:53437728-53437747 | Msa1162680:CDS | 50.0% | |
| AGCCAGGGAATTCGAAGAAG+TGG | - | chr7_4:53437733-53437752 | None:intergenic | 50.0% | |
| ! | TGTGGAACCGGTGAGAGTAT+CGG | + | chr7_4:53437980-53437999 | Msa1162680:CDS | 50.0% |
| GGATGTGAACCAATTCCGGT+TGG | + | chr7_4:53438001-53438020 | Msa1162680:CDS | 50.0% | |
| CACATAGTGAGAGTGGTAGC+TGG | - | chr7_4:53439366-53439385 | None:intergenic | 50.0% | |
| GGCACCGCCAATAATGACAA+CGG | + | chr7_4:53439463-53439482 | Msa1162680:exon | 50.0% | |
| GAAGCCCAGATTATTGCCCT+TGG | + | chr7_4:53439519-53439538 | Msa1162680:three_prime_UTR | 50.0% | |
| GAGCTGAATGGGTGGATCTG+AGG | - | chr7_4:53437668-53437687 | None:intergenic | 55.0% | |
| ! | GAGTGAAGGACCGGTGTTGA+AGG | - | chr7_4:53437700-53437719 | None:intergenic | 55.0% |
| ! | GTTTACGGCTGCAGTTGGTG+TGG | + | chr7_4:53437962-53437981 | Msa1162680:intron | 55.0% |
| CTCGTCGGTAGTATCCTCCA+CGG | - | chr7_4:53438030-53438049 | None:intergenic | 55.0% | |
| GTGGAGGATACTACCGACGA+GGG | + | chr7_4:53438029-53438048 | Msa1162680:CDS | 55.0% | |
| TGAAACTGCAGCTCCCTCGT+CGG | - | chr7_4:53438045-53438064 | None:intergenic | 55.0% | |
| CAGTAGTCGAGAAGAGGGTG+CGG | + | chr7_4:53438142-53438161 | Msa1162680:CDS | 55.0% | |
| GTGGCGACCCTTTCACAAGA+AGG | - | chr7_4:53439390-53439409 | None:intergenic | 55.0% | |
| TTTAGTGGCAGTGGTTCCGG+TGG | - | chr7_4:53439418-53439437 | None:intergenic | 55.0% | |
| ACCATCTCGATTACCACCGG+TGG | + | chr7_4:53439441-53439460 | Msa1162680:CDS | 55.0% | |
| CCATCTCGATTACCACCGGT+GGG | + | chr7_4:53439442-53439461 | Msa1162680:CDS | 55.0% | |
| TCATTATTGGCGGTGCCCAC+CGG | - | chr7_4:53439460-53439479 | None:intergenic | 55.0% | |
| GAGCTGAATGGGTGGATCTG+AGG | - | chr7_4:53437668-53437687 | None:intergenic | 55.0% | |
| ! | GAGTGAAGGACCGGTGTTGA+AGG | - | chr7_4:53437700-53437719 | None:intergenic | 55.0% |
| ! | GTTTACGGCTGCAGTTGGTG+TGG | + | chr7_4:53437962-53437981 | Msa1162680:intron | 55.0% |
| CTCGTCGGTAGTATCCTCCA+CGG | - | chr7_4:53438030-53438049 | None:intergenic | 55.0% | |
| GTGGAGGATACTACCGACGA+GGG | + | chr7_4:53438029-53438048 | Msa1162680:CDS | 55.0% | |
| TGAAACTGCAGCTCCCTCGT+CGG | - | chr7_4:53438045-53438064 | None:intergenic | 55.0% | |
| CAGTAGTCGAGAAGAGGGTG+CGG | + | chr7_4:53438142-53438161 | Msa1162680:CDS | 55.0% | |
| GTGGCGACCCTTTCACAAGA+AGG | - | chr7_4:53439390-53439409 | None:intergenic | 55.0% | |
| TTTAGTGGCAGTGGTTCCGG+TGG | - | chr7_4:53439418-53439437 | None:intergenic | 55.0% | |
| ACCATCTCGATTACCACCGG+TGG | + | chr7_4:53439441-53439460 | Msa1162680:CDS | 55.0% | |
| CCATCTCGATTACCACCGGT+GGG | + | chr7_4:53439442-53439461 | Msa1162680:CDS | 55.0% | |
| TCATTATTGGCGGTGCCCAC+CGG | - | chr7_4:53439460-53439479 | None:intergenic | 55.0% | |
| GAAGGCTGGGAGTGAAGGAC+CGG | - | chr7_4:53437709-53437728 | None:intergenic | 60.0% | |
| GTGGAGAAGGCTGGGAGTGA+AGG | - | chr7_4:53437714-53437733 | None:intergenic | 60.0% | |
| ! | GGCTGCAGTTGGTGTGGAAC+CGG | + | chr7_4:53437968-53437987 | Msa1162680:intron | 60.0% |
| TATCCTCCACGGACGCCAAC+CGG | - | chr7_4:53438019-53438038 | None:intergenic | 60.0% | |
| CGTGGAGGATACTACCGACG+AGG | + | chr7_4:53438028-53438047 | Msa1162680:CDS | 60.0% | |
| AGGCACAAGCCCCCACTTGA+AGG | - | chr7_4:53438381-53438400 | None:intergenic | 60.0% | |
| ! | AGTGGTTCCGGTGGTGTTGG+TGG | - | chr7_4:53439409-53439428 | None:intergenic | 60.0% |
| CCCACCGGTGGTAATCGAGA+TGG | - | chr7_4:53439445-53439464 | None:intergenic | 60.0% | |
| GAAGGCTGGGAGTGAAGGAC+CGG | - | chr7_4:53437709-53437728 | None:intergenic | 60.0% | |
| GTGGAGAAGGCTGGGAGTGA+AGG | - | chr7_4:53437714-53437733 | None:intergenic | 60.0% | |
| ! | GGCTGCAGTTGGTGTGGAAC+CGG | + | chr7_4:53437968-53437987 | Msa1162680:intron | 60.0% |
| TATCCTCCACGGACGCCAAC+CGG | - | chr7_4:53438019-53438038 | None:intergenic | 60.0% | |
| CGTGGAGGATACTACCGACG+AGG | + | chr7_4:53438028-53438047 | Msa1162680:CDS | 60.0% | |
| AGGCACAAGCCCCCACTTGA+AGG | - | chr7_4:53438381-53438400 | None:intergenic | 60.0% | |
| ! | AGTGGTTCCGGTGGTGTTGG+TGG | - | chr7_4:53439409-53439428 | None:intergenic | 60.0% |
| CCCACCGGTGGTAATCGAGA+TGG | - | chr7_4:53439445-53439464 | None:intergenic | 60.0% | |
| CCACGGACGCCAACCGGAAT+TGG | - | chr7_4:53438013-53438032 | None:intergenic | 65.0% | |
| CCAATTCCGGTTGGCGTCCG+TGG | + | chr7_4:53438010-53438029 | Msa1162680:CDS | 65.0% | |
| ATTCCGGTTGGCGTCCGTGG+AGG | + | chr7_4:53438013-53438032 | Msa1162680:CDS | 65.0% | |
| AGGGTCGCCACCAACACCAC+CGG | + | chr7_4:53439399-53439418 | Msa1162680:CDS | 65.0% | |
| GGCAGTGGTTCCGGTGGTGT+TGG | - | chr7_4:53439412-53439431 | None:intergenic | 65.0% | |
| TTATTGGCGGTGCCCACCGG+TGG | - | chr7_4:53439457-53439476 | None:intergenic | 65.0% | |
| CCACGGACGCCAACCGGAAT+TGG | - | chr7_4:53438013-53438032 | None:intergenic | 65.0% | |
| CCAATTCCGGTTGGCGTCCG+TGG | + | chr7_4:53438010-53438029 | Msa1162680:CDS | 65.0% | |
| ATTCCGGTTGGCGTCCGTGG+AGG | + | chr7_4:53438013-53438032 | Msa1162680:CDS | 65.0% | |
| AGGGTCGCCACCAACACCAC+CGG | + | chr7_4:53439399-53439418 | Msa1162680:CDS | 65.0% | |
| GGCAGTGGTTCCGGTGGTGT+TGG | - | chr7_4:53439412-53439431 | None:intergenic | 65.0% | |
| TTATTGGCGGTGCCCACCGG+TGG | - | chr7_4:53439457-53439476 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 53437384 | 53439699 | 53437384 | ID=Msa1162680;Name=Msa1162680 |
| chr7_4 | mRNA | 53437384 | 53439699 | 53437384 | ID=Msa1162680-mRNA-1;Parent=Msa1162680;Name=Msa1162680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=139|1|1|1|1|1|4|223|293 |
| chr7_4 | exon | 53437384 | 53437763 | 53437384 | ID=Msa1162680-mRNA-1:exon:15438;Parent=Msa1162680-mRNA-1 |
| chr7_4 | exon | 53437976 | 53438280 | 53437976 | ID=Msa1162680-mRNA-1:exon:15439;Parent=Msa1162680-mRNA-1 |
| chr7_4 | exon | 53438986 | 53439065 | 53438986 | ID=Msa1162680-mRNA-1:exon:15440;Parent=Msa1162680-mRNA-1 |
| chr7_4 | exon | 53439221 | 53439699 | 53439221 | ID=Msa1162680-mRNA-1:exon:15441;Parent=Msa1162680-mRNA-1 |
| chr7_4 | five_prime_UTR | 53437384 | 53437522 | 53437384 | ID=Msa1162680-mRNA-1:five_prime_utr;Parent=Msa1162680-mRNA-1 |
| chr7_4 | CDS | 53437523 | 53437763 | 53437523 | ID=Msa1162680-mRNA-1:cds;Parent=Msa1162680-mRNA-1 |
| chr7_4 | CDS | 53437976 | 53438280 | 53437976 | ID=Msa1162680-mRNA-1:cds;Parent=Msa1162680-mRNA-1 |
| chr7_4 | CDS | 53438986 | 53439065 | 53438986 | ID=Msa1162680-mRNA-1:cds;Parent=Msa1162680-mRNA-1 |
| chr7_4 | CDS | 53439221 | 53439476 | 53439221 | ID=Msa1162680-mRNA-1:cds;Parent=Msa1162680-mRNA-1 |
| chr7_4 | three_prime_UTR | 53439477 | 53439699 | 53439477 | ID=Msa1162680-mRNA-1:three_prime_utr;Parent=Msa1162680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
