AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0388250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388250 MtrunA17_Chr2g0282161 99.099 555 5 0 1 555 1 555 0.0 1125
Msa0388250 MtrunA17_Chr5g0440381 32.163 541 350 5 1 533 5 536 1.47e-94 299
Msa0388250 MtrunA17_Chr3g0123341 33.461 523 332 9 9 524 18 531 2.26e-89 285
Msa0388250 MtrunA17_Chr8g0380331 30.697 531 347 8 13 527 13 538 1.11e-71 239
Msa0388250 MtrunA17_Chr1g0160221 29.063 523 345 12 24 538 29 533 8.99e-68 228
Msa0388250 MtrunA17_Chr6g0461541 28.755 546 361 12 1 538 5 530 3.46e-66 224
Msa0388250 MtrunA17_Chr7g0214841 26.966 534 348 10 22 532 20 534 5.73e-66 223
Msa0388250 MtrunA17_Chr7g0272821 29.848 526 347 11 7 524 6 517 2.14e-63 216
Msa0388250 MtrunA17_Chr7g0241881 29.167 528 348 10 7 524 6 517 1.00e-61 212
Msa0388250 MtrunA17_Chr3g0139481 31.061 264 174 4 267 524 212 473 9.32e-27 113
Msa0388250 MtrunA17_Chr3g0139481 36.301 146 93 0 20 165 25 170 9.93e-26 110
Msa0388250 MtrunA17_Chr4g0069951 27.758 281 174 6 168 429 406 676 3.02e-20 95.5
Msa0388250 MtrunA17_Chr8g0392171 26.797 306 176 8 192 485 2 271 7.20e-19 87.0
Msa0388250 MtrunA17_Chr4g0044341 25.769 260 170 6 168 414 409 658 2.22e-16 83.2
Msa0388250 MtrunA17_Chr8g0345151 27.854 219 134 6 228 430 473 683 3.88e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388250 AT5G26360.1 89.550 555 58 0 1 555 1 555 0.0 1017
Msa0388250 AT3G11830.1 33.457 541 343 5 1 533 5 536 7.04e-95 300
Msa0388250 AT3G11830.2 33.272 541 342 6 1 533 5 534 3.17e-92 293
Msa0388250 AT1G24510.1 34.549 521 329 8 9 524 18 531 1.49e-90 288
Msa0388250 AT3G18190.1 31.418 522 342 9 10 524 22 534 2.01e-77 254
Msa0388250 AT1G24510.3 32.787 488 311 9 42 524 3 478 3.04e-76 249
Msa0388250 AT1G24510.2 32.900 462 298 8 68 524 1 455 2.67e-72 238
Msa0388250 AT3G20050.1 30.114 528 352 6 14 527 14 538 3.85e-71 238
Msa0388250 AT3G03960.1 27.778 522 353 11 24 538 32 536 6.82e-65 221
Msa0388250 AT5G20890.1 29.356 528 347 10 7 524 6 517 7.35e-62 213
Msa0388250 AT5G16070.1 25.497 553 371 8 4 534 2 535 7.95e-60 207
Msa0388250 AT3G02530.1 25.362 552 370 8 4 532 2 534 1.71e-59 206
Msa0388250 AT4G33240.4 27.046 281 176 6 168 429 396 666 1.54e-20 96.7
Msa0388250 AT4G33240.2 27.046 281 176 6 168 429 398 668 1.54e-20 96.7
Msa0388250 AT4G33240.6 27.046 281 176 6 168 429 399 669 1.58e-20 96.7
Msa0388250 AT4G33240.1 27.046 281 176 6 168 429 399 669 1.58e-20 96.7
Msa0388250 AT4G33240.7 27.046 281 176 6 168 429 399 669 1.58e-20 96.7
Msa0388250 AT4G33240.5 27.046 281 176 6 168 429 399 669 1.64e-20 96.7
Msa0388250 AT4G33240.3 27.046 281 176 6 168 429 399 669 1.75e-20 96.7
Msa0388250 AT3G14270.2 26.335 281 179 7 168 430 411 681 2.18e-17 86.7
Msa0388250 AT3G14270.1 26.335 281 179 7 168 430 411 681 2.18e-17 86.7
Msa0388250 AT1G71010.1 23.954 263 177 5 165 414 352 604 2.00e-16 83.6

Find 166 sgRNAs with CRISPR-Local

Find 447 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTATTCTTAAGAAATTT+TGG 0.088730 3_1:+92648855 Msa0388250:three_prime_UTR
ACCAAATTCACAAGTCAATT+TGG 0.107359 3_1:+92645780 Msa0388250:CDS
CCCAAATTGACTTGTGAATT+TGG 0.111350 3_1:-92645781 None:intergenic
AAGCTTGTACTGTATTATTA+AGG 0.193579 3_1:+92647678 Msa0388250:CDS
TGTTCAAGTGTCATGCTTTA+TGG 0.197536 3_1:+92648944 Msa0388250:three_prime_UTR
TTATTTGAAGTTAAGAAAAT+TGG 0.228729 3_1:+92647614 Msa0388250:CDS
CTGAGGACTGCATGATTTCT+AGG 0.231010 3_1:-92642787 None:intergenic
CCACCTCCAGGAACAAGTTT+TGG 0.245793 3_1:-92647861 None:intergenic
AGTTTGTGCCTTCACATTAT+AGG 0.249274 3_1:-92648600 None:intergenic
TTGCCCTCTTGAGTATAAAA+AGG 0.258332 3_1:+92647295 Msa0388250:CDS
AAGCTGCATGCATGCTTCTA+AGG 0.263661 3_1:+92648639 Msa0388250:CDS
AGATACTTTGGTTCTGGATT+TGG 0.264897 3_1:+92642728 Msa0388250:five_prime_UTR
GGCTTTGAAGGGCCTGCTCC+AGG 0.267217 3_1:-92648701 None:intergenic
CCAAATTCACAAGTCAATTT+GGG 0.281512 3_1:+92645781 Msa0388250:CDS
TCTGATGTCGGTACTGGTGC+TGG 0.297029 3_1:+92647590 Msa0388250:CDS
AGAAGAAGATACTTTGGTTC+TGG 0.305393 3_1:+92642722 Msa0388250:five_prime_UTR
TCACCGACACAAGGCATAAA+AGG 0.316749 3_1:-92649097 None:intergenic
AAGATGCTTCTTGATGCTTC+TGG 0.319424 3_1:+92644078 Msa0388250:CDS
AGAGAAGGGTCTTAGTGATT+TGG 0.323297 3_1:+92647445 Msa0388250:CDS
ACAGTGTTCCATTCATTTCC+AGG 0.326384 3_1:+92642409 Msa0388250:five_prime_UTR
AAACTTGATATGCGATTATA+TGG 0.328901 3_1:+92649119 Msa0388250:three_prime_UTR
ATCTCCGACTTCTTCGTCTT+GGG 0.330557 3_1:-92644897 None:intergenic
TGAAGTTGGGAGGTGGTTAA+AGG 0.330730 3_1:-92642521 None:intergenic
TTTCAGAACATACATCGTTC+TGG 0.333868 3_1:+92649055 Msa0388250:three_prime_UTR
CTCCATGCTTGCTCAGATAA+TGG 0.339131 3_1:-92647472 None:intergenic
CATCTCCGACTTCTTCGTCT+TGG 0.342454 3_1:-92644898 None:intergenic
CACCGCATGCCTTGGCAATT+CGG 0.351778 3_1:-92647532 None:intergenic
AAGGAGGAGGAGGCGGCGTT+AGG 0.354666 3_1:-92642502 None:intergenic
GTCTCAATCTTAGGCTTTGA+AGG 0.361612 3_1:-92648713 None:intergenic
GACTCTTTGAAACGTGAGTC+TGG 0.365350 3_1:+92643866 Msa0388250:CDS
ACAACAGTGGGTGTTGATAT+TGG 0.375171 3_1:+92647104 Msa0388250:CDS
AATAATACAGTACAAGCTTT+GGG 0.376013 3_1:-92647674 None:intergenic
ACCACATCTGTCATCATTCT+TGG 0.376651 3_1:+92644923 Msa0388250:CDS
AGGAGGAGGAGGCGGCGTTA+GGG 0.378043 3_1:-92642501 None:intergenic
TAATAATACAGTACAAGCTT+TGG 0.380733 3_1:-92647675 None:intergenic
TTTAACCACCTCCCAACTTC+AGG 0.380930 3_1:+92642523 Msa0388250:five_prime_UTR
GCTTTGAAGGGCCTGCTCCA+GGG 0.381395 3_1:-92648700 None:intergenic
ATCTTTCTCCTCATCTTGCC+AGG 0.386648 3_1:-92647245 None:intergenic
AAGAAGCAGGCCCCTGGAGC+AGG 0.394021 3_1:+92648689 Msa0388250:CDS
TCTCCCTCGGTCTCAATCTT+AGG 0.395252 3_1:-92648722 None:intergenic
TAAGAAGTTCAGCATTTGTT+TGG 0.396948 3_1:-92647325 None:intergenic
AATGCATGGATTGGCATTGA+TGG 0.400045 3_1:+92648275 Msa0388250:CDS
TGCAGCATATAACAAAGCTT+TGG 0.404233 3_1:+92645379 Msa0388250:intron
AGCTTGTACTGTATTATTAA+GGG 0.412154 3_1:+92647679 Msa0388250:CDS
CTTGTAGTGCGGTCATTGTC+CGG 0.414199 3_1:-92648148 None:intergenic
GAATCCTCAAGCTGCGCACC+AGG 0.416463 3_1:-92647179 None:intergenic
CTGGAGTCTCTTGTTGAAGT+TGG 0.416658 3_1:+92647358 Msa0388250:CDS
ATTATTAAGGGGTGCTAGTA+AGG 0.424390 3_1:+92647691 Msa0388250:CDS
GAACAGACCAGATGAGTTGC+AGG 0.428469 3_1:+92647565 Msa0388250:CDS
GATATAATTCGTACAACATT+GGG 0.434382 3_1:+92644039 Msa0388250:CDS
TTCTCTGTAACAACCAAGTC+TGG 0.436296 3_1:-92647428 None:intergenic
TGAAAATTATAGCATGCAAA+TGG 0.436575 3_1:+92648248 Msa0388250:intron
TGAATCTATTCCACGTACTT+TGG 0.438051 3_1:+92648100 Msa0388250:CDS
CTCGCCGTCGGCATCTCCCT+CGG 0.440258 3_1:-92648735 None:intergenic
CTTTGAAGGGCCTGCTCCAG+GGG 0.441053 3_1:-92648699 None:intergenic
TCAGACTCCTGCAACTCATC+TGG 0.446459 3_1:-92647572 None:intergenic
GCAATGGCAGCAGCTTCATA+TGG 0.448185 3_1:-92648074 None:intergenic
AACAAAGATGTGGTTGCCCC+TGG 0.456951 3_1:+92647227 Msa0388250:CDS
GAATAATTAAATACTTAAAG+AGG 0.457173 3_1:-92648841 None:intergenic
TTCAGAACATACATCGTTCT+GGG 0.461999 3_1:+92649056 Msa0388250:three_prime_UTR
GCTTTAAGAAGAAGATACTT+TGG 0.463826 3_1:+92642716 Msa0388250:five_prime_UTR
GTTCTTGTCAATGAAAGCTT+CGG 0.464365 3_1:-92645254 None:intergenic
TTACGGTCTTGAGCATCAAT+AGG 0.467143 3_1:-92645437 None:intergenic
AATGCAGGAGGACAAATGTT+GGG 0.467727 3_1:+92645735 Msa0388250:intron
GTGGTTAAAGGAGGAGGAGG+CGG 0.469687 3_1:-92642509 None:intergenic
TGAAAACAAGCAACTCTCAA+TGG 0.474330 3_1:-92649022 None:intergenic
CCAAAACTTGTTCCTGGAGG+TGG 0.476990 3_1:+92647861 Msa0388250:CDS
GCGTAGAAGTTACCTGAAGT+TGG 0.478067 3_1:-92642535 None:intergenic
AAGCATGCATGCAGCTTCAA+TGG 0.478250 3_1:-92648633 None:intergenic
TGGGAGGTGGTTAAAGGAGG+AGG 0.480754 3_1:-92642515 None:intergenic
CAGTGTTCCATTCATTTCCA+GGG 0.482579 3_1:+92642410 Msa0388250:five_prime_UTR
CAGGAGTCTGATGTCGGTAC+TGG 0.489559 3_1:+92647584 Msa0388250:CDS
ATCAAGAAGAAGCAGGCCCC+TGG 0.492359 3_1:+92648683 Msa0388250:CDS
CGTAGAAGTTACCTGAAGTT+GGG 0.492520 3_1:-92642534 None:intergenic
TGATATAATTCGTACAACAT+TGG 0.494523 3_1:+92644038 Msa0388250:CDS
CGAGTGAGTAACAGAGAGAA+AGG 0.498095 3_1:-92642466 None:intergenic
GAGGTGGTTAAAGGAGGAGG+AGG 0.498153 3_1:-92642512 None:intergenic
TGAGGATTCGAGAGTTCTCA+AGG 0.501299 3_1:+92647193 Msa0388250:CDS
TAGAAAACCCTGGAAATGAA+TGG 0.510330 3_1:-92642417 None:intergenic
AGAGGATCACCTTTGACGCC+TGG 0.511277 3_1:-92643913 None:intergenic
GAGTCTCTTGTTGAAGTTGG+AGG 0.512986 3_1:+92647361 Msa0388250:CDS
AGCATATAACAAAGCTTTGG+AGG 0.514704 3_1:+92645382 Msa0388250:intron
ATTGGCATTGATGGAAATAC+TGG 0.514728 3_1:+92648284 Msa0388250:CDS
CGTACTTTGGCACAAAATTG+TGG 0.516524 3_1:+92648113 Msa0388250:CDS
ATAAAACATCAGCACAATCA+AGG 0.520322 3_1:-92648880 None:intergenic
ATTGTGGAGTAAACGTCATC+CGG 0.520410 3_1:+92648129 Msa0388250:CDS
GACTTGGTTGTTACAGAGAA+GGG 0.522462 3_1:+92647431 Msa0388250:CDS
CTGATGTCGGTACTGGTGCT+GGG 0.526357 3_1:+92647591 Msa0388250:CDS
TGAGGACTGCATGATTTCTA+GGG 0.527998 3_1:-92642786 None:intergenic
AACTTCTTAAAGAAGAAGAC+TGG 0.529976 3_1:+92647339 Msa0388250:CDS
CGGACAATGACCGCACTACA+AGG 0.532946 3_1:+92648149 Msa0388250:CDS
TGAGGTTGAAAGAAACCTAC+AGG 0.532972 3_1:+92647724 Msa0388250:CDS
AAGCATCTTTAGCATGGACC+TGG 0.533448 3_1:-92644064 None:intergenic
GAGACAAGTACCTTGGCAGC+TGG 0.535922 3_1:-92644683 None:intergenic
TCTTTCTCCTCATCTTGCCA+GGG 0.536384 3_1:-92647244 None:intergenic
AAATGCAGGAGGACAAATGT+TGG 0.537076 3_1:+92645734 Msa0388250:intron
GGTGCATCATGCTAATATCC+AGG 0.537436 3_1:+92643895 Msa0388250:CDS
ATCTCTGTAGCACCACCTCC+AGG 0.539267 3_1:-92647873 None:intergenic
CAATGAAAGCTTCGGCAACA+TGG 0.540939 3_1:-92645246 None:intergenic
GGTCCCTGGTGCGCAGCTTG+AGG 0.544252 3_1:+92647175 Msa0388250:CDS
GTAAACTACAACAGGAATTG+TGG 0.545065 3_1:+92644613 Msa0388250:intron
AGTTGGGAGGTGGTTAAAGG+AGG 0.547736 3_1:-92642518 None:intergenic
ATCAAGGTTGAGAAGGTCCC+TGG 0.551852 3_1:+92647161 Msa0388250:CDS
TGCTAATATCCAGGCGTCAA+AGG 0.552854 3_1:+92643904 Msa0388250:CDS
ATTGAAGTTTAAACCAGACT+TGG 0.553489 3_1:+92647415 Msa0388250:CDS
GAGTGGAATCAAGAAGAAGC+AGG 0.556687 3_1:+92648676 Msa0388250:CDS
TGGAATAGATTCAAAAGCAA+TGG 0.561218 3_1:-92648090 None:intergenic
TATCTACATCTCTTAAACCA+TGG 0.561631 3_1:-92647127 None:intergenic
CAAATTCACAAGTCAATTTG+GGG 0.565801 3_1:+92645782 Msa0388250:CDS
AAATTATATCAAGGTTGAGA+AGG 0.566760 3_1:+92647154 Msa0388250:CDS
TATTGCTCATCCAGCTGCCA+AGG 0.569445 3_1:+92644673 Msa0388250:CDS
TGCCATTATCTGAGCAAGCA+TGG 0.569972 3_1:+92647470 Msa0388250:CDS
AATGGAGAAAATGCATGGAT+TGG 0.569974 3_1:+92648266 Msa0388250:CDS
CAGAAGAGTTCTTCTATCGA+AGG 0.570379 3_1:+92647918 Msa0388250:CDS
TTCGTACAACATTGGGACCC+AGG 0.571407 3_1:+92644046 Msa0388250:CDS
TCTCAATCTTAGGCTTTGAA+GGG 0.572066 3_1:-92648712 None:intergenic
AATAACAGCACCGCATGCCT+TGG 0.573559 3_1:-92647540 None:intergenic
CAAGACGAAGAAGTCGGAGA+TGG 0.577173 3_1:+92644899 Msa0388250:CDS
AGACTTGGTTGTTACAGAGA+AGG 0.577254 3_1:+92647430 Msa0388250:CDS
GTGGGTGTTGATATTGGCCA+TGG 0.577458 3_1:+92647110 Msa0388250:CDS
TGGAAGGATTTGCTCGCCGT+CGG 0.584192 3_1:-92648747 None:intergenic
TTGCTTAAACAAACAGTACC+AGG 0.586765 3_1:-92648904 None:intergenic
GCTTGTACTGTATTATTAAG+GGG 0.588332 3_1:+92647680 Msa0388250:CDS
AGTAATGTTTAACAAAGATG+TGG 0.589801 3_1:+92647217 Msa0388250:CDS
AGTTACCTGAAGTTGGGAGG+TGG 0.593806 3_1:-92642528 None:intergenic
TTCTATCGAAGGCATTGAGA+AGG 0.594600 3_1:+92647929 Msa0388250:CDS
CATCCTACAGTTATTTGCCG+AGG 0.596745 3_1:+92645280 Msa0388250:CDS
AATCCTCAAGCTGCGCACCA+GGG 0.598531 3_1:-92647178 None:intergenic
TATTGATGCTACTACAACAG+TGG 0.599428 3_1:+92647091 Msa0388250:CDS
ATCAAGAAGCATCTTTAGCA+TGG 0.599778 3_1:-92644070 None:intergenic
GAAACGTGAGTCTGGAGCAA+AGG 0.599966 3_1:+92643874 Msa0388250:CDS
TGCTGACATGAAAGAGCGCA+AGG 0.603461 3_1:+92648313 Msa0388250:CDS
TGATAATAACCGAATTGCCA+AGG 0.604859 3_1:+92647523 Msa0388250:CDS
ATGCTTCTTGATGCTTCTGG+AGG 0.606288 3_1:+92644081 Msa0388250:CDS
AGGATTGATGATATAGTGAG+TGG 0.606903 3_1:+92648659 Msa0388250:CDS
GAAAACAAACAGTTTCAGCC+TGG 0.607018 3_1:-92648998 None:intergenic
AACCGAATTGCCAAGGCATG+CGG 0.607588 3_1:+92647530 Msa0388250:CDS
ATGCAAATGGAGAAAATGCA+TGG 0.610848 3_1:+92648261 Msa0388250:CDS
CTTACTGAGAACTACAACTG+AGG 0.611153 3_1:-92642804 None:intergenic
TAGTAAGGATCTCTTGAATG+AGG 0.616230 3_1:+92647706 Msa0388250:CDS
CTTTCTCCTCATCTTGCCAG+GGG 0.618134 3_1:-92647243 None:intergenic
TTACCTCGGCAAATAACTGT+AGG 0.621545 3_1:-92645283 None:intergenic
CTGGGATGCCTATAATGTGA+AGG 0.622790 3_1:+92648592 Msa0388250:CDS
AGGATGCCATGTCTGTTGCT+AGG 0.623139 3_1:+92647823 Msa0388250:intron
ATGCAGGAGGACAAATGTTG+GGG 0.628171 3_1:+92645736 Msa0388250:intron
CTGGGTAAATGCGATTACGC+AGG 0.637515 3_1:+92649074 Msa0388250:three_prime_UTR
AAGCCTAAGATTGAGACCGA+GGG 0.639435 3_1:+92648719 Msa0388250:CDS
AAAGCCTAAGATTGAGACCG+AGG 0.639722 3_1:+92648718 Msa0388250:CDS
GGAATTGTGGTAACAAACGA+TGG 0.639749 3_1:+92644626 Msa0388250:intron
AGCATCTTTAGCATGGACCT+GGG 0.641425 3_1:-92644063 None:intergenic
GAGACCGAGGGAGATGCCGA+CGG 0.648360 3_1:+92648731 Msa0388250:CDS
TATCAAGTTTCACCGACACA+AGG 0.650310 3_1:-92649106 None:intergenic
GTTGGAGGAAGAATACATTG+AGG 0.653847 3_1:+92647376 Msa0388250:CDS
GAGTTGCAGGAGTCTGATGT+CGG 0.655712 3_1:+92647578 Msa0388250:CDS
ATTGATGCTACTACAACAGT+GGG 0.658789 3_1:+92647092 Msa0388250:CDS
TATGTTCCTAGCAACAGACA+TGG 0.662859 3_1:-92647829 None:intergenic
CAAAATGAACTAGAAAACCC+TGG 0.664601 3_1:-92642427 None:intergenic
ACCAAGAATGATGACAGATG+TGG 0.671414 3_1:-92644924 None:intergenic
AATCCAAAACTTGTTCCTGG+AGG 0.673753 3_1:+92647858 Msa0388250:CDS
AGAAGTTACCTGAAGTTGGG+AGG 0.674421 3_1:-92642531 None:intergenic
TGGTTGCCCCTGGCAAGATG+AGG 0.674881 3_1:+92647237 Msa0388250:CDS
CAATCAAGAAGAATGATACG+TGG 0.679875 3_1:-92647275 None:intergenic
CGCACCCAAGACGAAGAAGT+CGG 0.680075 3_1:+92644893 Msa0388250:CDS
GAGGATTCGAGAGTTCTCAA+GGG 0.691262 3_1:+92647194 Msa0388250:CDS
AATCAAGAAGAATGATACGT+GGG 0.699347 3_1:-92647274 None:intergenic
TTAGTGCAATCAGAAGACTG+AGG 0.785980 3_1:+92647495 Msa0388250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATATTTTCAAACATTTT+AGG + chr3_1:92645867-92645886 Msa0388250:intron 10.0%
!! AGATATTAAAAATTATATCA+AGG + chr3_1:92647145-92647164 Msa0388250:CDS 10.0%
!!! TAATTATTCTTAAGAAATTT+TGG + chr3_1:92648855-92648874 Msa0388250:three_prime_UTR 10.0%
!!! AATTATTCTTAAGAAATTTT+GGG + chr3_1:92648856-92648875 Msa0388250:three_prime_UTR 10.0%
!!! TTGAAAATGATTTTAAACAT+AGG + chr3_1:92643551-92643570 Msa0388250:intron 15.0%
!!! ACAACGTTAAATTTTTTTTT+AGG - chr3_1:92643592-92643611 None:intergenic 15.0%
!!! TAGATTATTCTTTTAAAATG+TGG - chr3_1:92643660-92643679 None:intergenic 15.0%
!! TGTTTAACATCAATATATAT+AGG - chr3_1:92644962-92644981 None:intergenic 15.0%
!!! TTTTTTTTTGCTTATAACTT+GGG - chr3_1:92646076-92646095 None:intergenic 15.0%
!!! TTTTTTTTTTGCTTATAACT+TGG - chr3_1:92646077-92646096 None:intergenic 15.0%
!!! AAAGTTTTTTGCTTATAATT+TGG + chr3_1:92646442-92646461 Msa0388250:intron 15.0%
!!! AAGTTTTTTGCTTATAATTT+GGG + chr3_1:92646443-92646462 Msa0388250:intron 15.0%
!!! TTAGGAAATAAAACTATTTT+AGG + chr3_1:92646566-92646585 Msa0388250:intron 15.0%
!!! TTATTTGAAGTTAAGAAAAT+TGG + chr3_1:92647614-92647633 Msa0388250:CDS 15.0%
!! GAATAATTAAATACTTAAAG+AGG - chr3_1:92648844-92648863 None:intergenic 15.0%
!!! AAATGAAAACATTTTCAGAT+CGG - chr3_1:92642567-92642586 None:intergenic 20.0%
!!! ATTTTATTACCAAATGATTC+TGG - chr3_1:92643483-92643502 None:intergenic 20.0%
!!! AAATGATTTTAAACATAGGT+TGG + chr3_1:92643555-92643574 Msa0388250:intron 20.0%
!!! TCAATTTTAACTTTGTACAT+GGG - chr3_1:92643705-92643724 None:intergenic 20.0%
!!! TAAGCATAGCTTTTTAAATA+TGG + chr3_1:92643807-92643826 Msa0388250:intron 20.0%
!!! TTGTTGTTTCTAATTTAATG+TGG + chr3_1:92643990-92644009 Msa0388250:intron 20.0%
!!! TTGTTTTCTTAAATTACTAC+AGG - chr3_1:92644169-92644188 None:intergenic 20.0%
!! AATAAGAAAATATTTAGCCT+CGG - chr3_1:92644384-92644403 None:intergenic 20.0%
!!! TGGTAATTTTTATAAGAGTT+TGG + chr3_1:92644454-92644473 Msa0388250:intron 20.0%
!! TGATAGGAAAAAAAAACTTA+CGG - chr3_1:92645457-92645476 None:intergenic 20.0%
!!! TTTTTTTTTCCTATCAAGAT+TGG + chr3_1:92645461-92645480 Msa0388250:intron 20.0%
!! TTCTATATTCCGATTATTTA+TGG + chr3_1:92645547-92645566 Msa0388250:intron 20.0%
!!! TTTTTGTTAATCAATGCAAT+TGG + chr3_1:92645965-92645984 Msa0388250:intron 20.0%
!!! GGAAATAAAACTATTTTGTT+TGG - chr3_1:92646155-92646174 None:intergenic 20.0%
!! TTGGAACAACAAATTTAAAT+TGG + chr3_1:92646411-92646430 Msa0388250:intron 20.0%
!!! TTTTTGCTTATAATTTGAGA+CGG + chr3_1:92646480-92646499 Msa0388250:intron 20.0%
!!! ATTTGTTTTGATTTTCAATG+TGG + chr3_1:92646518-92646537 Msa0388250:intron 20.0%
!! TTATTTATACACTATTAGCT+AGG - chr3_1:92646634-92646653 None:intergenic 20.0%
!! CTTATAGTAGCATTAAATTT+GGG - chr3_1:92646781-92646800 None:intergenic 20.0%
!! ACTTATAGTAGCATTAAATT+TGG - chr3_1:92646782-92646801 None:intergenic 20.0%
!! ATAATTCAATAGATCTAGAA+AGG - chr3_1:92647032-92647051 None:intergenic 20.0%
!!! AAATAATGATGGATAGTTTT+CGG - chr3_1:92648384-92648403 None:intergenic 20.0%
!! TAAAAATAAATGGATAACGA+AGG - chr3_1:92648432-92648451 None:intergenic 20.0%
!!! TATCCATTTATTTTTAAACG+AGG + chr3_1:92648436-92648455 Msa0388250:intron 20.0%
!!! TCTGATAATGTTTTGTATTA+TGG + chr3_1:92648562-92648581 Msa0388250:intron 20.0%
!!! CTGATAATGTTTTGTATTAT+GGG + chr3_1:92648563-92648582 Msa0388250:intron 20.0%
!!! TTTTTGTTCTAAATGACTCA+TGG + chr3_1:92642853-92642872 Msa0388250:intron 25.0%
!!! GATTTCGAATGTATTGATTA+TGG + chr3_1:92642979-92642998 Msa0388250:intron 25.0%
!!! TTGTGTATTGGTTTATGTTT+TGG + chr3_1:92643278-92643297 Msa0388250:intron 25.0%
! TCTAATGTGAAAACAAAATG+TGG - chr3_1:92643512-92643531 None:intergenic 25.0%
! AAATGTGGACAGATATAAAA+TGG - chr3_1:92643645-92643664 None:intergenic 25.0%
!!! CTCAATTTTAACTTTGTACA+TGG - chr3_1:92643706-92643725 None:intergenic 25.0%
! GAATGTTGTTAGAAAATAAG+CGG + chr3_1:92643725-92643744 Msa0388250:intron 25.0%
! AATGTTGTTAGAAAATAAGC+GGG + chr3_1:92643726-92643745 Msa0388250:intron 25.0%
!! ATAGCTTTTTAAATATGGAG+TGG + chr3_1:92643812-92643831 Msa0388250:intron 25.0%
! TGATATAATTCGTACAACAT+TGG + chr3_1:92644038-92644057 Msa0388250:CDS 25.0%
! GATATAATTCGTACAACATT+GGG + chr3_1:92644039-92644058 Msa0388250:CDS 25.0%
! TAACATCATATGTAAGTTGT+AGG + chr3_1:92644493-92644512 Msa0388250:intron 25.0%
! AGTTTACAGGAAAAAAGAAT+AGG - chr3_1:92644600-92644619 None:intergenic 25.0%
!! ATTTTATTGATATTGCTTCG+TGG + chr3_1:92644715-92644734 Msa0388250:intron 25.0%
!! ATTACTGATGTTATTTGTGT+GGG - chr3_1:92644991-92645010 None:intergenic 25.0%
!! AATTACTGATGTTATTTGTG+TGG - chr3_1:92644992-92645011 None:intergenic 25.0%
! AGGAGAATTTAAATTACTAC+GGG - chr3_1:92645036-92645055 None:intergenic 25.0%
! GAGGAGAATTTAAATTACTA+CGG - chr3_1:92645037-92645056 None:intergenic 25.0%
! ATGTGTTGTCATATACTAAA+TGG + chr3_1:92645141-92645160 Msa0388250:intron 25.0%
! ATTAATACGATACATTACCT+CGG - chr3_1:92645300-92645319 None:intergenic 25.0%
! TAATGTATCGTATTAATCAG+CGG + chr3_1:92645303-92645322 Msa0388250:intron 25.0%
!! GTACACAATTTTATACTGTA+AGG - chr3_1:92645335-92645354 None:intergenic 25.0%
! AAAAATGTACCAATCTTGAT+AGG - chr3_1:92645473-92645492 None:intergenic 25.0%
! TATATTCCGATTATTTATGG+AGG + chr3_1:92645550-92645569 Msa0388250:intron 25.0%
! TATGTCAAGAAGAAATTCAA+AGG - chr3_1:92645689-92645708 None:intergenic 25.0%
! TTTCGTTCATCAATAGAATT+GGG - chr3_1:92645716-92645735 None:intergenic 25.0%
!! TTTTCGTTCATCAATAGAAT+TGG - chr3_1:92645717-92645736 None:intergenic 25.0%
! TGAGCAAAGAATATCATATT+TGG - chr3_1:92645847-92645866 None:intergenic 25.0%
!!! TTTTAGGTTGATGTTTAACT+TGG + chr3_1:92645883-92645902 Msa0388250:intron 25.0%
! ATTGGTTATTATTCATGTGA+TGG + chr3_1:92645983-92646002 Msa0388250:intron 25.0%
! ATTATTCATGTGATGGTTAT+TGG + chr3_1:92645990-92646009 Msa0388250:intron 25.0%
! AATACTATGAAGGGTAATTT+AGG - chr3_1:92646176-92646195 None:intergenic 25.0%
!!! AGTTGTTTTGATTTTCAATG+TGG - chr3_1:92646206-92646225 None:intergenic 25.0%
! TAAAGCAGTTGAATTGAAAA+AGG - chr3_1:92646603-92646622 None:intergenic 25.0%
! TGAACAGGACTAAAATTTAA+TGG + chr3_1:92646703-92646722 Msa0388250:intron 25.0%
! GAACAGGACTAAAATTTAAT+GGG + chr3_1:92646704-92646723 Msa0388250:intron 25.0%
! CATTCACTATTGTTAAATGA+TGG + chr3_1:92646848-92646867 Msa0388250:intron 25.0%
! AAATTATATCAAGGTTGAGA+AGG + chr3_1:92647154-92647173 Msa0388250:CDS 25.0%
! AGTAATGTTTAACAAAGATG+TGG + chr3_1:92647217-92647236 Msa0388250:CDS 25.0%
! AATAATACAGTACAAGCTTT+GGG - chr3_1:92647677-92647696 None:intergenic 25.0%
! TAATAATACAGTACAAGCTT+TGG - chr3_1:92647678-92647697 None:intergenic 25.0%
! AAGCTTGTACTGTATTATTA+AGG + chr3_1:92647678-92647697 Msa0388250:CDS 25.0%
! AGCTTGTACTGTATTATTAA+GGG + chr3_1:92647679-92647698 Msa0388250:CDS 25.0%
! AATATCAATAACTAACCTGT+AGG - chr3_1:92647742-92647761 None:intergenic 25.0%
!!! TCCTAACTTTTAATTCATTC+TGG + chr3_1:92648018-92648037 Msa0388250:intron 25.0%
! ACCAGAATGAATTAAAAGTT+AGG - chr3_1:92648022-92648041 None:intergenic 25.0%
!! TAATTCTTGTTGATTATCAG+TGG + chr3_1:92648051-92648070 Msa0388250:intron 25.0%
! TGAAAATTATAGCATGCAAA+TGG + chr3_1:92648248-92648267 Msa0388250:intron 25.0%
! TTGCCTCGTTTAAAAATAAA+TGG - chr3_1:92648442-92648461 None:intergenic 25.0%
! AAACTTGATATGCGATTATA+TGG + chr3_1:92649119-92649138 Msa0388250:three_prime_UTR 25.0%
! AAATCGAAAGCGTAAAAGAA+GGG - chr3_1:92642649-92642668 None:intergenic 30.0%
! AAAATCGAAAGCGTAAAAGA+AGG - chr3_1:92642650-92642669 None:intergenic 30.0%
!! GCTTTAAGAAGAAGATACTT+TGG + chr3_1:92642716-92642735 Msa0388250:five_prime_UTR 30.0%
AAAAAAAGCTAACGCGTAAA+GGG - chr3_1:92642838-92642857 None:intergenic 30.0%
ATTTCGTATGAGTTCATGTT+TGG + chr3_1:92642888-92642907 Msa0388250:intron 30.0%
ATACATAAAACCAGTTCACT+CGG - chr3_1:92642933-92642952 None:intergenic 30.0%
!!! GAACTGGTTTTATGTATGTT+TGG + chr3_1:92642936-92642955 Msa0388250:intron 30.0%
! GTTTCAAGTAGAATCAAATC+TGG + chr3_1:92643117-92643136 Msa0388250:intron 30.0%
TCAATTTCACAAAGTGTGTT+TGG - chr3_1:92643194-92643213 None:intergenic 30.0%
! ATGTGCAATGGTTTATGTTT+TGG + chr3_1:92643235-92643254 Msa0388250:intron 30.0%
ACGTAAAAGTGATTGTGTAT+TGG + chr3_1:92643266-92643285 Msa0388250:intron 30.0%
TTGAGTGTAAGAATCATGTT+TGG + chr3_1:92643335-92643354 Msa0388250:intron 30.0%
! TTCTGGAGAGAAAATTGATT+GGG - chr3_1:92643466-92643485 None:intergenic 30.0%
! ATTCTGGAGAGAAAATTGAT+TGG - chr3_1:92643467-92643486 None:intergenic 30.0%
! ATTTTCTCTCCAGAATCATT+TGG + chr3_1:92643471-92643490 Msa0388250:intron 30.0%
TCACATTAGAGAATGCATTA+TGG + chr3_1:92643522-92643541 Msa0388250:intron 30.0%
!!! ATTTTAACTTTGTACATGGG+TGG - chr3_1:92643702-92643721 None:intergenic 30.0%
CACATCAGAATTAAAACCAA+AGG - chr3_1:92643759-92643778 None:intergenic 30.0%
ATATGTAAGTTGTAGGTTCT+GGG + chr3_1:92644500-92644519 Msa0388250:intron 30.0%
! TTTTTCCTGTAAACTACAAC+AGG + chr3_1:92644605-92644624 Msa0388250:intron 30.0%
AAACAAAGAGAAAGTAAACG+TGG - chr3_1:92644815-92644834 None:intergenic 30.0%
!! TTCATACTTTCTGAAATTGC+TGG + chr3_1:92644833-92644852 Msa0388250:intron 30.0%
TTAAATTACTACGGGTATCA+GGG - chr3_1:92645028-92645047 None:intergenic 30.0%
TTTAAATTACTACGGGTATC+AGG - chr3_1:92645029-92645048 None:intergenic 30.0%
GTAATTTAAATTCTCCTCTC+TGG + chr3_1:92645039-92645058 Msa0388250:intron 30.0%
TAGTATATGACAACACATTC+TGG - chr3_1:92645139-92645158 None:intergenic 30.0%
!!! TACTTTTTCCCTGATTTATC+AGG + chr3_1:92645169-92645188 Msa0388250:intron 30.0%
AAAAGCAACCTGATAAATCA+GGG - chr3_1:92645180-92645199 None:intergenic 30.0%
AAAAAGCAACCTGATAAATC+AGG - chr3_1:92645181-92645200 None:intergenic 30.0%
ACTATTTGTGCAATCTATCT+AGG - chr3_1:92645581-92645600 None:intergenic 30.0%
TAGATTGCACAAATAGTTTG+TGG + chr3_1:92645584-92645603 Msa0388250:intron 30.0%
! AGATTGCACAAATAGTTTGT+GGG + chr3_1:92645585-92645604 Msa0388250:intron 30.0%
AAGCAAACAGAATTGCAATA+TGG - chr3_1:92645636-92645655 None:intergenic 30.0%
ACCAAATTCACAAGTCAATT+TGG + chr3_1:92645780-92645799 Msa0388250:CDS 30.0%
CCAAATTCACAAGTCAATTT+GGG + chr3_1:92645781-92645800 Msa0388250:CDS 30.0%
CAAATTCACAAGTCAATTTG+GGG + chr3_1:92645782-92645801 Msa0388250:CDS 30.0%
GGTAGAAAATTACAGTTATC+TGG - chr3_1:92645926-92645945 None:intergenic 30.0%
! TGTAATTTTCTACCAAAGCA+CGG + chr3_1:92645932-92645951 Msa0388250:intron 30.0%
! TTTTTGCTTATAACTTGGGA+CGG - chr3_1:92646072-92646091 None:intergenic 30.0%
TTTCTTAGTAAGTCTGATCT+TGG - chr3_1:92646109-92646128 None:intergenic 30.0%
AAAGAATTTAGGAGGTTCTA+AGG - chr3_1:92646249-92646268 None:intergenic 30.0%
TGAACAAGAAAGAATTTAGG+AGG - chr3_1:92646257-92646276 None:intergenic 30.0%
CAGTGAACAAGAAAGAATTT+AGG - chr3_1:92646260-92646279 None:intergenic 30.0%
AAATACTAGTTCCAAGGATT+AGG - chr3_1:92646336-92646355 None:intergenic 30.0%
GCTTATAATTTGGGTGAAAA+AGG + chr3_1:92646452-92646471 Msa0388250:intron 30.0%
AATACTATGAAGGGTGATTT+AGG + chr3_1:92646548-92646567 Msa0388250:intron 30.0%
TTATTTGTGCTCTTGTTCTT+TGG + chr3_1:92646659-92646678 Msa0388250:intron 30.0%
TGCACAGCTATAGTTATAAA+GGG - chr3_1:92646822-92646841 None:intergenic 30.0%
TAAATCCTGGAGTATAATCA+AGG - chr3_1:92647069-92647088 None:intergenic 30.0%
TATCTACATCTCTTAAACCA+TGG - chr3_1:92647130-92647149 None:intergenic 30.0%
AATCAAGAAGAATGATACGT+GGG - chr3_1:92647277-92647296 None:intergenic 30.0%
TAAGAAGTTCAGCATTTGTT+TGG - chr3_1:92647328-92647347 None:intergenic 30.0%
AACTTCTTAAAGAAGAAGAC+TGG + chr3_1:92647339-92647358 Msa0388250:CDS 30.0%
ATTGAAGTTTAAACCAGACT+TGG + chr3_1:92647415-92647434 Msa0388250:CDS 30.0%
GCTTGTACTGTATTATTAAG+GGG + chr3_1:92647680-92647699 Msa0388250:CDS 30.0%
! AAAAATCCAAAACTTGTTCC+TGG + chr3_1:92647855-92647874 Msa0388250:CDS 30.0%
TGGAATAGATTCAAAAGCAA+TGG - chr3_1:92648093-92648112 None:intergenic 30.0%
AATAGAAGTTAAAGAAGACC+AGG - chr3_1:92648226-92648245 None:intergenic 30.0%
TGACTTTGGCAAAATAATGA+TGG - chr3_1:92648395-92648414 None:intergenic 30.0%
CCATGTTTATTTCAGTACAA+CGG + chr3_1:92648476-92648495 Msa0388250:intron 30.0%
AGTCAAAAAAACAACGTCAA+GGG - chr3_1:92648789-92648808 None:intergenic 30.0%
AAGTCAAAAAAACAACGTCA+AGG - chr3_1:92648790-92648809 None:intergenic 30.0%
GTAGAGTTAAAAAATCTGCT+AGG + chr3_1:92648810-92648829 Msa0388250:three_prime_UTR 30.0%
ATAAAACATCAGCACAATCA+AGG - chr3_1:92648883-92648902 None:intergenic 30.0%
TAGAAAACCCTGGAAATGAA+TGG - chr3_1:92642420-92642439 None:intergenic 35.0%
CAAAATGAACTAGAAAACCC+TGG - chr3_1:92642430-92642449 None:intergenic 35.0%
!!! CAGGGTTTTCTAGTTCATTT+TGG + chr3_1:92642428-92642447 Msa0388250:five_prime_UTR 35.0%
!!! GGTTTTCTAGTTCATTTTGG+CGG + chr3_1:92642431-92642450 Msa0388250:five_prime_UTR 35.0%
! AAACCCTAAATCTGAAACGA+AGG - chr3_1:92642602-92642621 None:intergenic 35.0%
! AGAAGAAGATACTTTGGTTC+TGG + chr3_1:92642722-92642741 Msa0388250:five_prime_UTR 35.0%
!! AGATACTTTGGTTCTGGATT+TGG + chr3_1:92642728-92642747 Msa0388250:five_prime_UTR 35.0%
CAAAAAAAGCTAACGCGTAA+AGG - chr3_1:92642839-92642858 None:intergenic 35.0%
! AAAATTGATTCCGAGTGAAC+TGG + chr3_1:92642920-92642939 Msa0388250:intron 35.0%
TCAAGTAGAATCAAATCTGG+AGG + chr3_1:92643120-92643139 Msa0388250:intron 35.0%
ATCAATTATGCCTCCAAAAG+TGG + chr3_1:92643166-92643185 Msa0388250:intron 35.0%
AAAGTGACTTGAATGTGCAA+TGG + chr3_1:92643223-92643242 Msa0388250:intron 35.0%
CTTGATTCTAACTTGAAGCT+AGG - chr3_1:92643378-92643397 None:intergenic 35.0%
ATGTTTGTCTGTTCTCGAAT+AGG - chr3_1:92643419-92643438 None:intergenic 35.0%
GTGTTTCTTTCTCTCTAGTT+AGG + chr3_1:92643617-92643636 Msa0388250:intron 35.0%
!!! AAGCACTACTTAGTTTTGGT+CGG - chr3_1:92643948-92643967 None:intergenic 35.0%
! TAGCAAGCACTACTTAGTTT+TGG - chr3_1:92643952-92643971 None:intergenic 35.0%
! TTAATGTGGTTGTTGTTGAC+TGG + chr3_1:92644004-92644023 Msa0388250:intron 35.0%
!! ATCAAGAAGCATCTTTAGCA+TGG - chr3_1:92644073-92644092 None:intergenic 35.0%
ACTTATTGCCTATAAAGCAC+TGG + chr3_1:92644127-92644146 Msa0388250:intron 35.0%
TTGAATGTAATCCCATGTGT+TGG + chr3_1:92644194-92644213 Msa0388250:intron 35.0%
ACACCTTCAATCATAAGTGT+TGG + chr3_1:92644237-92644256 Msa0388250:intron 35.0%
!! AATCATAAGTGTTGGTGCTA+CGG + chr3_1:92644245-92644264 Msa0388250:intron 35.0%
ACGGAGCTTATAGCTTATTA+AGG + chr3_1:92644264-92644283 Msa0388250:intron 35.0%
TTTGCAATTGTCATTCACTG+AGG + chr3_1:92644306-92644325 Msa0388250:intron 35.0%
!! ACTGAGGTTCTAGCTTATTA+AGG + chr3_1:92644322-92644341 Msa0388250:intron 35.0%
CTGAGATGTACATAGTTTCT+TGG + chr3_1:92644418-92644437 Msa0388250:intron 35.0%
CATATGTAAGTTGTAGGTTC+TGG + chr3_1:92644499-92644518 Msa0388250:intron 35.0%
AGAATAGGTGTCTAAGTACT+CGG - chr3_1:92644585-92644604 None:intergenic 35.0%
CAATTCCTGTTGTAGTTTAC+AGG - chr3_1:92644613-92644632 None:intergenic 35.0%
GTAAACTACAACAGGAATTG+TGG + chr3_1:92644613-92644632 Msa0388250:intron 35.0%
!! TTCTGAAATTGCTGGCTTAT+TGG + chr3_1:92644841-92644860 Msa0388250:intron 35.0%
!! AAATTGCTGGCTTATTGGAA+TGG + chr3_1:92644846-92644865 Msa0388250:intron 35.0%
TGAACTGAGATTCTTTCACA+TGG + chr3_1:92645075-92645094 Msa0388250:intron 35.0%
GTTCTTGTCAATGAAAGCTT+CGG - chr3_1:92645257-92645276 None:intergenic 35.0%
TGCAGCATATAACAAAGCTT+TGG + chr3_1:92645379-92645398 Msa0388250:intron 35.0%
! AGCATATAACAAAGCTTTGG+AGG + chr3_1:92645382-92645401 Msa0388250:intron 35.0%
! TGAACTTTTGCAAATCCACT+TGG - chr3_1:92645510-92645529 None:intergenic 35.0%
ATTCCGATTATTTATGGAGG+TGG + chr3_1:92645553-92645572 Msa0388250:intron 35.0%
TGGGTAGTAATTCATAGTAC+AGG + chr3_1:92645609-92645628 Msa0388250:intron 35.0%
GGGTAGTAATTCATAGTACA+GGG + chr3_1:92645610-92645629 Msa0388250:intron 35.0%
CTATTGATGAACGAAAATGC+AGG + chr3_1:92645720-92645739 Msa0388250:intron 35.0%
!! CCCAAATTGACTTGTGAATT+TGG - chr3_1:92645784-92645803 None:intergenic 35.0%
TGCTGTGAGTATATTTCTCT+TGG + chr3_1:92645812-92645831 Msa0388250:intron 35.0%
AATTACATCAATCCGTGCTT+TGG - chr3_1:92645947-92645966 None:intergenic 35.0%
! TAGACAACTGTGTTGATGTT+AGG + chr3_1:92646017-92646036 Msa0388250:intron 35.0%
! AGACAACTGTGTTGATGTTA+GGG + chr3_1:92646018-92646037 Msa0388250:intron 35.0%
AGTACAGTGTAATGAAGATG+TGG - chr3_1:92646049-92646068 None:intergenic 35.0%
GGCGTGTAAAATACTATGAA+GGG - chr3_1:92646539-92646558 None:intergenic 35.0%
TGGCGTGTAAAATACTATGA+AGG - chr3_1:92646538-92646557 None:intergenic 35.0%
! AGGCTGATGTTTTCATTAGA+CGG - chr3_1:92646313-92646332 None:intergenic 35.0%
TCCTTGGAACTAGTATTTCA+CGG + chr3_1:92646338-92646357 Msa0388250:intron 35.0%
! CGGTAATTGAGTAGATGTTT+TGG + chr3_1:92646358-92646377 Msa0388250:intron 35.0%
! TTGCTTATAATTTGAGACGG+AGG + chr3_1:92646483-92646502 Msa0388250:intron 35.0%
! TGCTTATAATTTGAGACGGA+GGG + chr3_1:92646484-92646503 Msa0388250:intron 35.0%
TGGCGTGTAAAATACTATGA+AGG + chr3_1:92646538-92646557 Msa0388250:intron 35.0%
GGCGTGTAAAATACTATGAA+GGG + chr3_1:92646539-92646558 Msa0388250:intron 35.0%
GTGCACAGCTATAGTTATAA+AGG - chr3_1:92646823-92646842 None:intergenic 35.0%
CTATTGTTAAATGATGGCTG+TGG + chr3_1:92646854-92646873 Msa0388250:intron 35.0%
CATGCAATCAATGCTGTTAA+TGG - chr3_1:92647008-92647027 None:intergenic 35.0%
TAGCATCAATAGCTAAATCC+TGG - chr3_1:92647082-92647101 None:intergenic 35.0%
TATTGATGCTACTACAACAG+TGG + chr3_1:92647091-92647110 Msa0388250:CDS 35.0%
ATTGATGCTACTACAACAGT+GGG + chr3_1:92647092-92647111 Msa0388250:CDS 35.0%
CAATCAAGAAGAATGATACG+TGG - chr3_1:92647278-92647297 None:intergenic 35.0%
TTGCCCTCTTGAGTATAAAA+AGG + chr3_1:92647295-92647314 Msa0388250:CDS 35.0%
TGCCCTCTTGAGTATAAAAA+GGG + chr3_1:92647296-92647315 Msa0388250:CDS 35.0%
! CACCCTTTTTATACTCAAGA+GGG - chr3_1:92647301-92647320 None:intergenic 35.0%
! TCACCCTTTTTATACTCAAG+AGG - chr3_1:92647302-92647321 None:intergenic 35.0%
TGATAATAACCGAATTGCCA+AGG + chr3_1:92647523-92647542 Msa0388250:CDS 35.0%
!! ATTATTAAGGGGTGCTAGTA+AGG + chr3_1:92647691-92647710 Msa0388250:CDS 35.0%
TAGTAAGGATCTCTTGAATG+AGG + chr3_1:92647706-92647725 Msa0388250:CDS 35.0%
AGAAAGCAGCATGATCAAAT+AGG - chr3_1:92647785-92647804 None:intergenic 35.0%
TGAATCTATTCCACGTACTT+TGG + chr3_1:92648100-92648119 Msa0388250:CDS 35.0%
!! TCTTACTTTTCCTTGTAGTG+CGG - chr3_1:92648162-92648181 None:intergenic 35.0%
ATGCAAATGGAGAAAATGCA+TGG + chr3_1:92648261-92648280 Msa0388250:CDS 35.0%
AATGGAGAAAATGCATGGAT+TGG + chr3_1:92648266-92648285 Msa0388250:CDS 35.0%
!! ATTGGCATTGATGGAAATAC+TGG + chr3_1:92648284-92648303 Msa0388250:CDS 35.0%
CCGTTGTACTGAAATAAACA+TGG - chr3_1:92648479-92648498 None:intergenic 35.0%
!! TTTGTATTATGGGCTAGATC+TGG + chr3_1:92648573-92648592 Msa0388250:intron 35.0%
!! TTGTATTATGGGCTAGATCT+GGG + chr3_1:92648574-92648593 Msa0388250:intron 35.0%
AGTTTGTGCCTTCACATTAT+AGG - chr3_1:92648603-92648622 None:intergenic 35.0%
! AGGATTGATGATATAGTGAG+TGG + chr3_1:92648659-92648678 Msa0388250:CDS 35.0%
!! TCTCAATCTTAGGCTTTGAA+GGG - chr3_1:92648715-92648734 None:intergenic 35.0%
!! TTGTGCTGATGTTTTATACC+TGG + chr3_1:92648886-92648905 Msa0388250:three_prime_UTR 35.0%
TTGCTTAAACAAACAGTACC+AGG - chr3_1:92648907-92648926 None:intergenic 35.0%
TGTTCAAGTGTCATGCTTTA+TGG + chr3_1:92648944-92648963 Msa0388250:three_prime_UTR 35.0%
!!! TGTTGTTTTAAGATTGTGCC+AGG + chr3_1:92648980-92648999 Msa0388250:three_prime_UTR 35.0%
TGAAAACAAGCAACTCTCAA+TGG - chr3_1:92649025-92649044 None:intergenic 35.0%
TTTCAGAACATACATCGTTC+TGG + chr3_1:92649055-92649074 Msa0388250:three_prime_UTR 35.0%
TTCAGAACATACATCGTTCT+GGG + chr3_1:92649056-92649075 Msa0388250:three_prime_UTR 35.0%
ACAGTGTTCCATTCATTTCC+AGG + chr3_1:92642409-92642428 Msa0388250:five_prime_UTR 40.0%
CAGTGTTCCATTCATTTCCA+GGG + chr3_1:92642410-92642429 Msa0388250:five_prime_UTR 40.0%
CGTAGAAGTTACCTGAAGTT+GGG - chr3_1:92642537-92642556 None:intergenic 40.0%
CCACCTTCGTTTCAGATTTA+GGG + chr3_1:92642596-92642615 Msa0388250:intron 40.0%
AGGGCAAAACGAAGAAATAC+TGG - chr3_1:92642630-92642649 None:intergenic 40.0%
TGAGGACTGCATGATTTCTA+GGG - chr3_1:92642789-92642808 None:intergenic 40.0%
CTTACTGAGAACTACAACTG+AGG - chr3_1:92642807-92642826 None:intergenic 40.0%
TATGAGTTCATGTTTGGCTG+CGG + chr3_1:92642894-92642913 Msa0388250:intron 40.0%
!! AGTGTGTTTGGTTCCACTTT+TGG - chr3_1:92643182-92643201 None:intergenic 40.0%
TGGAGAGAAAATTGATTGGG+AGG - chr3_1:92643463-92643482 None:intergenic 40.0%
TGGGTGGCTGAAATGATATA+TGG - chr3_1:92643686-92643705 None:intergenic 40.0%
TTTGGTCGGTAATCAGTAAG+AGG - chr3_1:92643934-92643953 None:intergenic 40.0%
AAGATGCTTCTTGATGCTTC+TGG + chr3_1:92644078-92644097 Msa0388250:CDS 40.0%
TATCAGTGCCAGTGCTTTAT+AGG - chr3_1:92644138-92644157 None:intergenic 40.0%
CTGATATGACACCAACACAT+GGG - chr3_1:92644208-92644227 None:intergenic 40.0%
TCTGATATGACACCAACACA+TGG - chr3_1:92644209-92644228 None:intergenic 40.0%
! CTTATGATTGAAGGTGTGTC+CGG - chr3_1:92644234-92644253 None:intergenic 40.0%
GCACCAACACTTATGATTGA+AGG - chr3_1:92644243-92644262 None:intergenic 40.0%
CGGTGAATGACAATTGCAAA+CGG - chr3_1:92644364-92644383 None:intergenic 40.0%
TTTGCAATTGTCATTCACCG+AGG + chr3_1:92644364-92644383 Msa0388250:intron 40.0%
! TTCTTGGTGATTGCAAGATG+TGG + chr3_1:92644434-92644453 Msa0388250:intron 40.0%
GGAATTGTGGTAACAAACGA+TGG + chr3_1:92644626-92644645 Msa0388250:intron 40.0%
AGAATGAGAGACAAGTACCT+TGG - chr3_1:92644693-92644712 None:intergenic 40.0%
ACCACATCTGTCATCATTCT+TGG + chr3_1:92644923-92644942 Msa0388250:CDS 40.0%
ACCAAGAATGATGACAGATG+TGG - chr3_1:92644927-92644946 None:intergenic 40.0%
! TACGGGTATCAGGGAATTTT+AGG - chr3_1:92645019-92645038 None:intergenic 40.0%
AAAGCAACTTAACACCAGAG+AGG - chr3_1:92645056-92645075 None:intergenic 40.0%
!! TCTCATCATTTTTGTGCAGC+TGG + chr3_1:92645214-92645233 Msa0388250:intron 40.0%
TTACCTCGGCAAATAACTGT+AGG - chr3_1:92645286-92645305 None:intergenic 40.0%
!! AGGCATCGCAATTTTGTCAA+TGG - chr3_1:92645420-92645439 None:intergenic 40.0%
TTACGGTCTTGAGCATCAAT+AGG - chr3_1:92645440-92645459 None:intergenic 40.0%
! CTTTTGCAAATCCACTTGGA+GGG - chr3_1:92645506-92645525 None:intergenic 40.0%
! ACTTTTGCAAATCCACTTGG+AGG - chr3_1:92645507-92645526 None:intergenic 40.0%
GTGCCACCTCCATAAATAAT+CGG - chr3_1:92645559-92645578 None:intergenic 40.0%
GATGAGTGATGTATACTGCT+AGG - chr3_1:92645667-92645686 None:intergenic 40.0%
TTGATGAACGAAAATGCAGG+AGG + chr3_1:92645723-92645742 Msa0388250:intron 40.0%
AAATGCAGGAGGACAAATGT+TGG + chr3_1:92645734-92645753 Msa0388250:intron 40.0%
AATGCAGGAGGACAAATGTT+GGG + chr3_1:92645735-92645754 Msa0388250:intron 40.0%
TACTAGTTCCAAGGATTAGG+AGG - chr3_1:92646333-92646352 None:intergenic 40.0%
ACCGTGAAATACTAGTTCCA+AGG - chr3_1:92646342-92646361 None:intergenic 40.0%
!! TTGTTTCTGTTCGAGTGAAC+AGG + chr3_1:92646688-92646707 Msa0388250:intron 40.0%
GCAATCAATGCTGTTAATGG+AGG - chr3_1:92647005-92647024 None:intergenic 40.0%
GTTGTCCTTGATTATACTCC+AGG + chr3_1:92647061-92647080 Msa0388250:intron 40.0%
!! ACAACAGTGGGTGTTGATAT+TGG + chr3_1:92647104-92647123 Msa0388250:CDS 40.0%
GTTGGAGGAAGAATACATTG+AGG + chr3_1:92647376-92647395 Msa0388250:CDS 40.0%
TTCTCTGTAACAACCAAGTC+TGG - chr3_1:92647431-92647450 None:intergenic 40.0%
! AGACTTGGTTGTTACAGAGA+AGG + chr3_1:92647430-92647449 Msa0388250:CDS 40.0%
! GACTTGGTTGTTACAGAGAA+GGG + chr3_1:92647431-92647450 Msa0388250:CDS 40.0%
AGAGAAGGGTCTTAGTGATT+TGG + chr3_1:92647445-92647464 Msa0388250:CDS 40.0%
TTAGTGCAATCAGAAGACTG+AGG + chr3_1:92647495-92647514 Msa0388250:CDS 40.0%
TGAGGTTGAAAGAAACCTAC+AGG + chr3_1:92647724-92647743 Msa0388250:CDS 40.0%
GCAGCATGATCAAATAGGTT+TGG - chr3_1:92647780-92647799 None:intergenic 40.0%
TATGTTCCTAGCAACAGACA+TGG - chr3_1:92647832-92647851 None:intergenic 40.0%
! AATCCAAAACTTGTTCCTGG+AGG + chr3_1:92647858-92647877 Msa0388250:CDS 40.0%
CAGAAGAGTTCTTCTATCGA+AGG + chr3_1:92647918-92647937 Msa0388250:CDS 40.0%
!! TTCTATCGAAGGCATTGAGA+AGG + chr3_1:92647929-92647948 Msa0388250:CDS 40.0%
ATGCTTCATCCATGTTCGAT+GGG + chr3_1:92647988-92648007 Msa0388250:intron 40.0%
GAATTCAAACCCATCGAACA+TGG - chr3_1:92648000-92648019 None:intergenic 40.0%
! CAATTTTGTGCCAAAGTACG+TGG - chr3_1:92648113-92648132 None:intergenic 40.0%
CGTACTTTGGCACAAAATTG+TGG + chr3_1:92648113-92648132 Msa0388250:CDS 40.0%
ATTGTGGAGTAAACGTCATC+CGG + chr3_1:92648129-92648148 Msa0388250:CDS 40.0%
!! AATGCATGGATTGGCATTGA+TGG + chr3_1:92648275-92648294 Msa0388250:CDS 40.0%
TGCCAAAGTCACATTAGAGT+TGG + chr3_1:92648404-92648423 Msa0388250:intron 40.0%
GCCAAAGTCACATTAGAGTT+GGG + chr3_1:92648405-92648424 Msa0388250:intron 40.0%
TCCCAACTCTAATGTGACTT+TGG - chr3_1:92648409-92648428 None:intergenic 40.0%
! GTCTCAATCTTAGGCTTTGA+AGG - chr3_1:92648716-92648735 None:intergenic 40.0%
! AAGTGTGTTTTCAGTCTGGA+AGG - chr3_1:92648766-92648785 None:intergenic 40.0%
GAAAACAAACAGTTTCAGCC+TGG - chr3_1:92649001-92649020 None:intergenic 40.0%
TATCAAGTTTCACCGACACA+AGG - chr3_1:92649109-92649128 None:intergenic 40.0%
CGAGTGAGTAACAGAGAGAA+AGG - chr3_1:92642469-92642488 None:intergenic 45.0%
TGAAGTTGGGAGGTGGTTAA+AGG - chr3_1:92642524-92642543 None:intergenic 45.0%
TTTAACCACCTCCCAACTTC+AGG + chr3_1:92642523-92642542 Msa0388250:five_prime_UTR 45.0%
AGAAGTTACCTGAAGTTGGG+AGG - chr3_1:92642534-92642553 None:intergenic 45.0%
GCGTAGAAGTTACCTGAAGT+TGG - chr3_1:92642538-92642557 None:intergenic 45.0%
GCCACCTTCGTTTCAGATTT+AGG + chr3_1:92642595-92642614 Msa0388250:intron 45.0%
! CCCTAAATCTGAAACGAAGG+TGG - chr3_1:92642599-92642618 None:intergenic 45.0%
CTGAGGACTGCATGATTTCT+AGG - chr3_1:92642790-92642809 None:intergenic 45.0%
!! GTGTTTGGTTCCACTTTTGG+AGG - chr3_1:92643179-92643198 None:intergenic 45.0%
! ATAAGCGGGCTCTTAACCTT+TGG + chr3_1:92643740-92643759 Msa0388250:intron 45.0%
! TCCACGCTTTAAATGTGCAG+AGG + chr3_1:92643844-92643863 Msa0388250:intron 45.0%
! TCCTCTGCACATTTAAAGCG+TGG - chr3_1:92643848-92643867 None:intergenic 45.0%
!! GACTCTTTGAAACGTGAGTC+TGG + chr3_1:92643866-92643885 Msa0388250:CDS 45.0%
GGTGCATCATGCTAATATCC+AGG + chr3_1:92643895-92643914 Msa0388250:CDS 45.0%
TGCTAATATCCAGGCGTCAA+AGG + chr3_1:92643904-92643923 Msa0388250:CDS 45.0%
! TGTGGTTGTTGTTGACTGGA+AGG + chr3_1:92644008-92644027 Msa0388250:intron 45.0%
AGCATCTTTAGCATGGACCT+GGG - chr3_1:92644066-92644085 None:intergenic 45.0%
AAGCATCTTTAGCATGGACC+TGG - chr3_1:92644067-92644086 None:intergenic 45.0%
ATGCTTCTTGATGCTTCTGG+AGG + chr3_1:92644081-92644100 Msa0388250:CDS 45.0%
!! GTTGGTGTCATATCAGACAC+CGG + chr3_1:92644212-92644231 Msa0388250:intron 45.0%
GTGAGCAAGAACGTACTGTA+TGG - chr3_1:92644752-92644771 None:intergenic 45.0%
TTCTTGCTCACGTCCTTTGA+AGG + chr3_1:92644761-92644780 Msa0388250:intron 45.0%
CCAGAAAGTTGTGCCTTCAA+AGG - chr3_1:92644777-92644796 None:intergenic 45.0%
! CCTTTGAAGGCACAACTTTC+TGG + chr3_1:92644774-92644793 Msa0388250:intron 45.0%
ATCTCCGACTTCTTCGTCTT+GGG - chr3_1:92644900-92644919 None:intergenic 45.0%
CAATGAAAGCTTCGGCAACA+TGG - chr3_1:92645249-92645268 None:intergenic 45.0%
CATCCTACAGTTATTTGCCG+AGG + chr3_1:92645280-92645299 Msa0388250:CDS 45.0%
TTTGTCACAAACCCTCCAAG+TGG + chr3_1:92645492-92645511 Msa0388250:intron 45.0%
! TGCACAAATAGTTTGTGGGC+TGG + chr3_1:92645589-92645608 Msa0388250:intron 45.0%
! GCACAAATAGTTTGTGGGCT+GGG + chr3_1:92645590-92645609 Msa0388250:intron 45.0%
ATGCAGGAGGACAAATGTTG+GGG + chr3_1:92645736-92645755 Msa0388250:intron 45.0%
GGGCTTGTAAAAAGCTGCAT+AGG + chr3_1:92645756-92645775 Msa0388250:CDS 45.0%
! CAACTGTGTTGATGTTAGGG+AGG + chr3_1:92646021-92646040 Msa0388250:intron 45.0%
AACATCAGCCTCCTAATCCT+TGG + chr3_1:92646322-92646341 Msa0388250:intron 45.0%
GCCTATAACGTCACAATGGT+GGG - chr3_1:92646946-92646965 None:intergenic 45.0%
TGAGGATTCGAGAGTTCTCA+AGG + chr3_1:92647193-92647212 Msa0388250:CDS 45.0%
GAGGATTCGAGAGTTCTCAA+GGG + chr3_1:92647194-92647213 Msa0388250:CDS 45.0%
TCTTTCTCCTCATCTTGCCA+GGG - chr3_1:92647247-92647266 None:intergenic 45.0%
ATCTTTCTCCTCATCTTGCC+AGG - chr3_1:92647248-92647267 None:intergenic 45.0%
CTGGAGTCTCTTGTTGAAGT+TGG + chr3_1:92647358-92647377 Msa0388250:CDS 45.0%
GAGTCTCTTGTTGAAGTTGG+AGG + chr3_1:92647361-92647380 Msa0388250:CDS 45.0%
TGCCATTATCTGAGCAAGCA+TGG + chr3_1:92647470-92647489 Msa0388250:CDS 45.0%
CTCCATGCTTGCTCAGATAA+TGG - chr3_1:92647475-92647494 None:intergenic 45.0%
! CTGAAACTCTTTTGCATGCC+AGG + chr3_1:92647803-92647822 Msa0388250:intron 45.0%
!! CTGTTGTTTCGTTGAACCAG+TGG + chr3_1:92647965-92647984 Msa0388250:intron 45.0%
! AACATGGATGAAGCATCCAC+TGG - chr3_1:92647984-92648003 None:intergenic 45.0%
GATGCTTCATCCATGTTCGA+TGG + chr3_1:92647987-92648006 Msa0388250:intron 45.0%
!!! ATGCTCTTTTCTCTGAAGCC+TGG + chr3_1:92648205-92648224 Msa0388250:intron 45.0%
CTGGGATGCCTATAATGTGA+AGG + chr3_1:92648592-92648611 Msa0388250:CDS 45.0%
AAGCATGCATGCAGCTTCAA+TGG - chr3_1:92648636-92648655 None:intergenic 45.0%
AAGCTGCATGCATGCTTCTA+AGG + chr3_1:92648639-92648658 Msa0388250:CDS 45.0%
GAGTGGAATCAAGAAGAAGC+AGG + chr3_1:92648676-92648695 Msa0388250:CDS 45.0%
AAAGCCTAAGATTGAGACCG+AGG + chr3_1:92648718-92648737 Msa0388250:CDS 45.0%
AAGCCTAAGATTGAGACCGA+GGG + chr3_1:92648719-92648738 Msa0388250:CDS 45.0%
!! AGGGAAGTGTGTTTTCAGTC+TGG - chr3_1:92648770-92648789 None:intergenic 45.0%
! AGGCCTTTTATGCCTTGTGT+CGG + chr3_1:92649094-92649113 Msa0388250:three_prime_UTR 45.0%
TCACCGACACAAGGCATAAA+AGG - chr3_1:92649100-92649119 None:intergenic 45.0%
AGTTGGGAGGTGGTTAAAGG+AGG - chr3_1:92642521-92642540 None:intergenic 50.0%
AGTTACCTGAAGTTGGGAGG+TGG - chr3_1:92642531-92642550 None:intergenic 50.0%
CTGAAACGAAGGTGGCGAAT+CGG - chr3_1:92642591-92642610 None:intergenic 50.0%
! GAAACGTGAGTCTGGAGCAA+AGG + chr3_1:92643874-92643893 Msa0388250:CDS 50.0%
TTCGTACAACATTGGGACCC+AGG + chr3_1:92644046-92644065 Msa0388250:CDS 50.0%
TATTGCTCATCCAGCTGCCA+AGG + chr3_1:92644673-92644692 Msa0388250:CDS 50.0%
CATCTCCGACTTCTTCGTCT+TGG - chr3_1:92644901-92644920 None:intergenic 50.0%
CAAGACGAAGAAGTCGGAGA+TGG + chr3_1:92644899-92644918 Msa0388250:CDS 50.0%
! CATGCTAACTTGTGCCCCAA+GGG - chr3_1:92646757-92646776 None:intergenic 50.0%
! TCATGCTAACTTGTGCCCCA+AGG - chr3_1:92646758-92646777 None:intergenic 50.0%
CCTTCACGGATCGTCTAAGA+CGG - chr3_1:92646919-92646938 None:intergenic 50.0%
CGTCTTAGACGATCCGTGAA+GGG + chr3_1:92646917-92646936 Msa0388250:intron 50.0%
GCCCACCATTGTGACGTTAT+AGG + chr3_1:92646942-92646961 Msa0388250:intron 50.0%
GGCCTATAACGTCACAATGG+TGG - chr3_1:92646947-92646966 None:intergenic 50.0%
TGCGGCCTATAACGTCACAA+TGG - chr3_1:92646950-92646969 None:intergenic 50.0%
TGTGACGTTATAGGCCGCAA+TGG + chr3_1:92646951-92646970 Msa0388250:intron 50.0%
GCCGCAATGGCGTGTTTATA+GGG + chr3_1:92646964-92646983 Msa0388250:intron 50.0%
GCCCTATAAACACGCCATTG+CGG - chr3_1:92646968-92646987 None:intergenic 50.0%
!! GTGGGTGTTGATATTGGCCA+TGG + chr3_1:92647110-92647129 Msa0388250:CDS 50.0%
ATCAAGGTTGAGAAGGTCCC+TGG + chr3_1:92647161-92647180 Msa0388250:CDS 50.0%
AACAAAGATGTGGTTGCCCC+TGG + chr3_1:92647227-92647246 Msa0388250:CDS 50.0%
CTTTCTCCTCATCTTGCCAG+GGG - chr3_1:92647246-92647265 None:intergenic 50.0%
AACCGAATTGCCAAGGCATG+CGG + chr3_1:92647530-92647549 Msa0388250:CDS 50.0%
AATAACAGCACCGCATGCCT+TGG - chr3_1:92647543-92647562 None:intergenic 50.0%
GAACAGACCAGATGAGTTGC+AGG + chr3_1:92647565-92647584 Msa0388250:CDS 50.0%
TCAGACTCCTGCAACTCATC+TGG - chr3_1:92647575-92647594 None:intergenic 50.0%
GAGTTGCAGGAGTCTGATGT+CGG + chr3_1:92647578-92647597 Msa0388250:CDS 50.0%
TAGCAACAGACATGGCATCC+TGG - chr3_1:92647824-92647843 None:intergenic 50.0%
AGGATGCCATGTCTGTTGCT+AGG + chr3_1:92647823-92647842 Msa0388250:intron 50.0%
! CCACCTCCAGGAACAAGTTT+TGG - chr3_1:92647864-92647883 None:intergenic 50.0%
! CCAAAACTTGTTCCTGGAGG+TGG + chr3_1:92647861-92647880 Msa0388250:CDS 50.0%
GCAATGGCAGCAGCTTCATA+TGG - chr3_1:92648077-92648096 None:intergenic 50.0%
CTTGTAGTGCGGTCATTGTC+CGG - chr3_1:92648151-92648170 None:intergenic 50.0%
! TGCTGACATGAAAGAGCGCA+AGG + chr3_1:92648313-92648332 Msa0388250:CDS 50.0%
TCTCCCTCGGTCTCAATCTT+AGG - chr3_1:92648725-92648744 None:intergenic 50.0%
CTGGGTAAATGCGATTACGC+AGG + chr3_1:92649074-92649093 Msa0388250:three_prime_UTR 50.0%
GTGGTTAAAGGAGGAGGAGG+CGG - chr3_1:92642512-92642531 None:intergenic 55.0%
GAGGTGGTTAAAGGAGGAGG+AGG - chr3_1:92642515-92642534 None:intergenic 55.0%
TGGGAGGTGGTTAAAGGAGG+AGG - chr3_1:92642518-92642537 None:intergenic 55.0%
AGAGGATCACCTTTGACGCC+TGG - chr3_1:92643916-92643935 None:intergenic 55.0%
GAGACAAGTACCTTGGCAGC+TGG - chr3_1:92644686-92644705 None:intergenic 55.0%
CGCACCCAAGACGAAGAAGT+CGG + chr3_1:92644893-92644912 Msa0388250:CDS 55.0%
CCGTCTTAGACGATCCGTGA+AGG + chr3_1:92646916-92646935 Msa0388250:intron 55.0%
!! CAATGGTGGGCATCCCTTCA+CGG - chr3_1:92646933-92646952 None:intergenic 55.0%
GGCCGCAATGGCGTGTTTAT+AGG + chr3_1:92646963-92646982 Msa0388250:intron 55.0%
AATCCTCAAGCTGCGCACCA+GGG - chr3_1:92647181-92647200 None:intergenic 55.0%
CACCGCATGCCTTGGCAATT+CGG - chr3_1:92647535-92647554 None:intergenic 55.0%
CAGGAGTCTGATGTCGGTAC+TGG + chr3_1:92647584-92647603 Msa0388250:CDS 55.0%
!! TCTGATGTCGGTACTGGTGC+TGG + chr3_1:92647590-92647609 Msa0388250:CDS 55.0%
!! CTGATGTCGGTACTGGTGCT+GGG + chr3_1:92647591-92647610 Msa0388250:CDS 55.0%
ATCTCTGTAGCACCACCTCC+AGG - chr3_1:92647876-92647895 None:intergenic 55.0%
CGGACAATGACCGCACTACA+AGG + chr3_1:92648149-92648168 Msa0388250:CDS 55.0%
ATCAAGAAGAAGCAGGCCCC+TGG + chr3_1:92648683-92648702 Msa0388250:CDS 55.0%
! TGGAAGGATTTGCTCGCCGT+CGG - chr3_1:92648750-92648769 None:intergenic 55.0%
TGTGCCCCAACTTGTGCCCT+TGG + chr3_1:92646738-92646757 Msa0388250:intron 60.0%
GTGCCCCAACTTGTGCCCTT+GGG + chr3_1:92646739-92646758 Msa0388250:intron 60.0%
TGCCCCAACTTGTGCCCTTG+GGG + chr3_1:92646740-92646759 Msa0388250:intron 60.0%
! TGCCCCAAGGGCACAAGTTG+GGG - chr3_1:92646745-92646764 None:intergenic 60.0%
! GTGCCCCAAGGGCACAAGTT+GGG - chr3_1:92646746-92646765 None:intergenic 60.0%
! TGTGCCCCAAGGGCACAAGT+TGG - chr3_1:92646747-92646766 None:intergenic 60.0%
TCTGCCATGCCATTCCGCCA+CGG - chr3_1:92646885-92646904 None:intergenic 60.0%
GAATCCTCAAGCTGCGCACC+AGG - chr3_1:92647182-92647201 None:intergenic 60.0%
TGGTTGCCCCTGGCAAGATG+AGG + chr3_1:92647237-92647256 Msa0388250:CDS 60.0%
! CTTTGAAGGGCCTGCTCCAG+GGG - chr3_1:92648702-92648721 None:intergenic 60.0%
!! GCTTTGAAGGGCCTGCTCCA+GGG - chr3_1:92648703-92648722 None:intergenic 60.0%
AGGAGGAGGAGGCGGCGTTA+GGG - chr3_1:92642504-92642523 None:intergenic 65.0%
AAGGAGGAGGAGGCGGCGTT+AGG - chr3_1:92642505-92642524 None:intergenic 65.0%
AAGAAGCAGGCCCCTGGAGC+AGG + chr3_1:92648689-92648708 Msa0388250:CDS 65.0%
!! GGCTTTGAAGGGCCTGCTCC+AGG - chr3_1:92648704-92648723 None:intergenic 65.0%
GAGACCGAGGGAGATGCCGA+CGG + chr3_1:92648731-92648750 Msa0388250:CDS 65.0%
TGATGGCTGTGGCGCTGCCG+TGG + chr3_1:92646865-92646884 Msa0388250:intron 70.0%
! GCTGCCGTGGCGGAATGGCA+TGG + chr3_1:92646878-92646897 Msa0388250:intron 70.0%
GGTCCCTGGTGCGCAGCTTG+AGG + chr3_1:92647175-92647194 Msa0388250:CDS 70.0%
CTCGCCGTCGGCATCTCCCT+CGG - chr3_1:92648738-92648757 None:intergenic 70.0%
TGGCTGTGGCGCTGCCGTGG+CGG + chr3_1:92646868-92646887 Msa0388250:intron 75.0%
! GTGGCGCTGCCGTGGCGGAA+TGG + chr3_1:92646873-92646892 Msa0388250:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 92642394 92649156 92642394 ID=Msa0388250;Name=Msa0388250
chr3_1 mRNA 92642394 92649156 92642394 ID=Msa0388250-mRNA-1;Parent=Msa0388250;Name=Msa0388250-mRNA-1;_AED=0.07;_eAED=0.07;_QI=236|1|1|1|0.92|0.85|14|381|555
chr3_1 exon 92642394 92642544 92642394 ID=Msa0388250-mRNA-1:exon:26034;Parent=Msa0388250-mRNA-1
chr3_1 exon 92642712 92642821 92642712 ID=Msa0388250-mRNA-1:exon:26035;Parent=Msa0388250-mRNA-1
chr3_1 exon 92643864 92643925 92643864 ID=Msa0388250-mRNA-1:exon:26036;Parent=Msa0388250-mRNA-1
chr3_1 exon 92644030 92644102 92644030 ID=Msa0388250-mRNA-1:exon:26037;Parent=Msa0388250-mRNA-1
chr3_1 exon 92644627 92644694 92644627 ID=Msa0388250-mRNA-1:exon:26038;Parent=Msa0388250-mRNA-1
chr3_1 exon 92644875 92644944 92644875 ID=Msa0388250-mRNA-1:exon:26039;Parent=Msa0388250-mRNA-1
chr3_1 exon 92645233 92645301 92645233 ID=Msa0388250-mRNA-1:exon:26040;Parent=Msa0388250-mRNA-1
chr3_1 exon 92645384 92645455 92645384 ID=Msa0388250-mRNA-1:exon:26041;Parent=Msa0388250-mRNA-1
chr3_1 exon 92645742 92645815 92645742 ID=Msa0388250-mRNA-1:exon:26042;Parent=Msa0388250-mRNA-1
chr3_1 exon 92647083 92647745 92647083 ID=Msa0388250-mRNA-1:exon:26043;Parent=Msa0388250-mRNA-1
chr3_1 exon 92647825 92647950 92647825 ID=Msa0388250-mRNA-1:exon:26044;Parent=Msa0388250-mRNA-1
chr3_1 exon 92648071 92648175 92648071 ID=Msa0388250-mRNA-1:exon:26045;Parent=Msa0388250-mRNA-1
chr3_1 exon 92648260 92648334 92648260 ID=Msa0388250-mRNA-1:exon:26046;Parent=Msa0388250-mRNA-1
chr3_1 exon 92648590 92649156 92648590 ID=Msa0388250-mRNA-1:exon:26047;Parent=Msa0388250-mRNA-1
chr3_1 five_prime_UTR 92642394 92642544 92642394 ID=Msa0388250-mRNA-1:five_prime_utr;Parent=Msa0388250-mRNA-1
chr3_1 five_prime_UTR 92642712 92642796 92642712 ID=Msa0388250-mRNA-1:five_prime_utr;Parent=Msa0388250-mRNA-1
chr3_1 CDS 92642797 92642821 92642797 ID=Msa0388250-mRNA-1:cds;Parent=Msa0388250-mRNA-1
chr3_1 CDS 92643864 92643925 92643864 ID=Msa0388250-mRNA-1:cds;Parent=Msa0388250-mRNA-1
chr3_1 CDS 92644030 92644102 92644030 ID=Msa0388250-mRNA-1:cds;Parent=Msa0388250-mRNA-1
chr3_1 CDS 92644627 92644694 92644627 ID=Msa0388250-mRNA-1:cds;Parent=Msa0388250-mRNA-1
chr3_1 CDS 92644875 92644944 92644875 ID=Msa0388250-mRNA-1:cds;Parent=Msa0388250-mRNA-1
chr3_1 CDS 92645233 92645301 92645233 ID=Msa0388250-mRNA-1:cds;Parent=Msa0388250-mRNA-1
chr3_1 CDS 92645384 92645455 92645384 ID=Msa0388250-mRNA-1:cds;Parent=Msa0388250-mRNA-1
chr3_1 CDS 92645742 92645815 92645742 ID=Msa0388250-mRNA-1:cds;Parent=Msa0388250-mRNA-1
chr3_1 CDS 92647083 92647745 92647083 ID=Msa0388250-mRNA-1:cds;Parent=Msa0388250-mRNA-1
chr3_1 CDS 92647825 92647950 92647825 ID=Msa0388250-mRNA-1:cds;Parent=Msa0388250-mRNA-1
chr3_1 CDS 92648071 92648175 92648071 ID=Msa0388250-mRNA-1:cds;Parent=Msa0388250-mRNA-1
chr3_1 CDS 92648260 92648334 92648260 ID=Msa0388250-mRNA-1:cds;Parent=Msa0388250-mRNA-1
chr3_1 CDS 92648590 92648775 92648590 ID=Msa0388250-mRNA-1:cds;Parent=Msa0388250-mRNA-1
chr3_1 three_prime_UTR 92648776 92649156 92648776 ID=Msa0388250-mRNA-1:three_prime_utr;Parent=Msa0388250-mRNA-1
Gene Sequence

>Msa0388250

ATGCAGTCCTCAGTTGTAGTTCTCAAGGACTCTTTGAAACGTGAGTCTGGAGCAAAGGTGCATCATGCTAATATCCAGGCGTCAAAGGCTGTTGCTGATATAATTCGTACAACATTGGGACCCAGGTCCATGCTAAAGATGCTTCTTGATGCTTCTGGAGGAATTGTGGTAACAAACGATGGAAATGCTATCTTACGTGAATTAGATATTGCTCATCCAGCTGCCAAGTCTATGATTGAATTAAGTCGCACCCAAGACGAAGAAGTCGGAGATGGAACCACATCTGTCATCATTCTTGCTGGTGAGATGCTCCATGTTGCCGAAGCTTTCATTGACAAGAACTATCATCCTACAGTTATTTGCCGAGCATATAACAAAGCTTTGGAGGATGCTATTGCTGCCATTGACAAAATTGCGATGCCTATTGATGCTCAAGACCGAGGACAAATGTTGGGGCTTGTAAAAAGCTGCATAGGCACCAAATTCACAAGTCAATTTGGGGATTTAATTGCTGATTTAGCTATTGATGCTACTACAACAGTGGGTGTTGATATTGGCCATGGTTTAAGAGATGTAGATATTAAAAATTATATCAAGGTTGAGAAGGTCCCTGGTGCGCAGCTTGAGGATTCGAGAGTTCTCAAGGGAGTAATGTTTAACAAAGATGTGGTTGCCCCTGGCAAGATGAGGAGAAAGATTGTTAACCCACGTATCATTCTTCTTGATTGCCCTCTTGAGTATAAAAAGGGTGAAAACCAAACAAATGCTGAACTTCTTAAAGAAGAAGACTGGAGTCTCTTGTTGAAGTTGGAGGAAGAATACATTGAGGAGCTCTGCATGCAGATATTGAAGTTTAAACCAGACTTGGTTGTTACAGAGAAGGGTCTTAGTGATTTGGCATGCCATTATCTGAGCAAGCATGGAGTTAGTGCAATCAGAAGACTGAGGAAAACTGATAATAACCGAATTGCCAAGGCATGCGGTGCTGTTATTGTGAACAGACCAGATGAGTTGCAGGAGTCTGATGTCGGTACTGGTGCTGGGTTATTTGAAGTTAAGAAAATTGGAGACGAGTACTTTGCTTTTATTGTTGATTGCAAAGAACCCAAAGCTTGTACTGTATTATTAAGGGGTGCTAGTAAGGATCTCTTGAATGAGGTTGAAAGAAACCTACAGGATGCCATGTCTGTTGCTAGGAACATAATAAAAAATCCAAAACTTGTTCCTGGAGGTGGTGCTACAGAGATGACTGTGTCAGCTGCTTTGAAACAGAAGAGTTCTTCTATCGAAGGCATTGAGAAGTGGCCATATGAAGCTGCTGCCATTGCTTTTGAATCTATTCCACGTACTTTGGCACAAAATTGTGGAGTAAACGTCATCCGGACAATGACCGCACTACAAGGAAAACATGCAAATGGAGAAAATGCATGGATTGGCATTGATGGAAATACTGGTGTCATTGCTGACATGAAAGAGCGCAAGATCTGGGATGCCTATAATGTGAAGGCACAAACTTTTAAGACTGCCATTGAAGCTGCATGCATGCTTCTAAGGATTGATGATATAGTGAGTGGAATCAAGAAGAAGCAGGCCCCTGGAGCAGGCCCTTCAAAGCCTAAGATTGAGACCGAGGGAGATGCCGACGGCGAGCAAATCCTTCCAGACTGA
Protein sequence

>Msa0388250

MQSSVVVLKDSLKRESGAKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDIAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLHVAEAFIDKNYHPTVICRAYNKALEDAIAAIDKIAMPIDAQDRGQMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDIGHGLRDVDIKNYIKVEKVPGAQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDCPLEYKKGENQTNAELLKEEDWSLLLKLEEEYIEELCMQILKFKPDLVVTEKGLSDLACHYLSKHGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEYFAFIVDCKEPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATEMTVSAALKQKSSSIEGIEKWPYEAAAIAFESIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGVIADMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGAGPSKPKIETEGDADGEQILPD*