AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0857640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 24 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCCTATATCAAATTATTT+TGG 0.192874 5_4:+53850089 None:intergenic
GTGATTCTTGCTGCTATTGC+AGG 0.287782 5_4:-53855930 Msa0857640:CDS
GCAATCCACCTCCTTATCTT+AGG 0.348042 5_4:-53855851 Msa0857640:CDS
GAGCCAAAATAATTTGATAT+AGG 0.367300 5_4:-53850092 Msa0857640:three_prime_UTR
AGAGAAATAAATTGCGAAAG+AGG 0.373985 5_4:-53850188 Msa0857640:three_prime_UTR
AGTTATACAACTTATCTCAT+TGG 0.388755 5_4:-53850055 Msa0857640:three_prime_UTR
TGCGAAAGAGGTATTGTTTG+AGG 0.403653 5_4:-53850176 Msa0857640:three_prime_UTR
TACAACTTATCTCATTGGTA+TGG 0.405466 5_4:-53850050 Msa0857640:three_prime_UTR
ATTATTGTTTCACATTGGTA+TGG 0.412975 5_4:-53849936 Msa0857640:three_prime_UTR
GACATATCTTGTTGCGAAAG+AGG 0.469198 5_4:-53855882 Msa0857640:CDS
CATTATGTTCGTGAAGTTTG+TGG 0.470458 5_4:-53855952 None:intergenic
CAACATGGGCGCCTAAGATA+AGG 0.483631 5_4:+53855840 None:intergenic
GAAGCACCAACCGCATTACA+TGG 0.495761 5_4:+53849977 None:intergenic
TTATTGTTTCACATTGGTAT+GGG 0.508546 5_4:-53849935 Msa0857640:three_prime_UTR
ACAACTTATCTCATTGGTAT+GGG 0.530116 5_4:-53850049 Msa0857640:three_prime_UTR
GCTATTGCAGGTGCTCTAGT+TGG 0.533237 5_4:-53855918 Msa0857640:CDS
TAAATGAAATTTGAAATGAA+AGG 0.563667 5_4:-53850222 Msa0857640:three_prime_UTR
TTGTAATTATTGTTTCACAT+TGG 0.604379 5_4:-53849941 Msa0857640:three_prime_UTR
GCTCTCCCATGTAATGCGGT+TGG 0.611718 5_4:-53849983 Msa0857640:three_prime_UTR
ATGATAGAAGAAGATACATG+AGG 0.647200 5_4:-53850248 Msa0857640:CDS
CATGGGCGCCTAAGATAAGG+AGG 0.647371 5_4:+53855843 None:intergenic
GGGCGCCTAAGATAAGGAGG+TGG 0.651110 5_4:+53855846 None:intergenic
AAGCACCAACCGCATTACAT+GGG 0.658781 5_4:+53849978 None:intergenic
AGAAGCTCTCCCATGTAATG+CGG 0.668418 5_4:-53849987 Msa0857640:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAACCATATTATATTAAA+GGG - chr5_4:53850388-53850407 Msa0857640:intron 10.0%
!! TAATTATGATATGTAAATTA+GGG + chr5_4:53850855-53850874 None:intergenic 10.0%
!! ATAATTATGATATGTAAATT+AGG + chr5_4:53850856-53850875 None:intergenic 10.0%
!! CAATTATTACTAAATATTAT+TGG - chr5_4:53852667-53852686 Msa0857640:intron 10.0%
!! AAATAATAAGAAATTAAAGT+CGG - chr5_4:53852706-53852725 Msa0857640:intron 10.0%
!! ATATATGTAACATATATATA+TGG - chr5_4:53853064-53853083 Msa0857640:intron 10.0%
!!! AATATCATATATTTTAGATA+AGG + chr5_4:53853290-53853309 None:intergenic 10.0%
!! TTCAAAATAAATATTATACA+CGG + chr5_4:53853451-53853470 None:intergenic 10.0%
!! TTTATAATAATTATAATGCA+CGG + chr5_4:53853870-53853889 None:intergenic 10.0%
!!! AGAAATAAATAATTTCTTTT+TGG - chr5_4:53854492-53854511 Msa0857640:intron 10.0%
!! TAAATCAATTAAATTAACAT+CGG - chr5_4:53854605-53854624 Msa0857640:intron 10.0%
!!! TTTATTCTTGAAATTTTTTT+TGG - chr5_4:53854782-53854801 Msa0857640:intron 10.0%
!!! TTTTTTAAATTCGAAATGAT+TGG + chr5_4:53850107-53850126 None:intergenic 15.0%
!! TGATATTATTATATATGAGA+AGG + chr5_4:53850133-53850152 None:intergenic 15.0%
!! ATATCACTAATAAGATTAAT+TGG - chr5_4:53850147-53850166 Msa0857640:three_prime_UTR 15.0%
!! GATAAACCATATTATATTAA+AGG - chr5_4:53850387-53850406 Msa0857640:intron 15.0%
!! TTTAACCCTTTAATATAATA+TGG + chr5_4:53850396-53850415 None:intergenic 15.0%
!!! ATATTTTTAACCCTTTAATA+TGG + chr5_4:53850434-53850453 None:intergenic 15.0%
!! AATTATGATATGTAAATTAG+GGG + chr5_4:53850854-53850873 None:intergenic 15.0%
!!! TATTTTTATTTTCTACCATT+TGG + chr5_4:53851019-53851038 None:intergenic 15.0%
!! GAAAATAAAAATAAAAGAGA+AGG - chr5_4:53851026-53851045 Msa0857640:intron 15.0%
!! ACAAAAAATGAAATATATTC+AGG - chr5_4:53851726-53851745 Msa0857640:intron 15.0%
!!! ACTTAGAAAAATCAATTTTT+CGG - chr5_4:53851818-53851837 Msa0857640:intron 15.0%
!! CTAGGTTAAAAAAAATTATT+TGG + chr5_4:53852352-53852371 None:intergenic 15.0%
!!! CAAATAATTTTTTTTAACCT+AGG - chr5_4:53852350-53852369 Msa0857640:intron 15.0%
!! AAAAAAAAATGTAGGAAAAT+AGG + chr5_4:53852421-53852440 None:intergenic 15.0%
!! CTATAGTTAAAAAAAAATGT+AGG + chr5_4:53852429-53852448 None:intergenic 15.0%
!! TCAAAATAAATATTATACAC+GGG + chr5_4:53853450-53853469 None:intergenic 15.0%
!! TTAGAAACAAATATTATACA+CGG + chr5_4:53853534-53853553 None:intergenic 15.0%
!!! TATAATTGATTTTATGATGT+TGG - chr5_4:53853675-53853694 Msa0857640:intron 15.0%
!!! ATAATTGATTTTATGATGTT+GGG - chr5_4:53853676-53853695 Msa0857640:intron 15.0%
!! AATTTATATTAATAACCACA+TGG - chr5_4:53853804-53853823 Msa0857640:intron 15.0%
!!! AATATAATAGAGTATTTCTA+TGG + chr5_4:53854216-53854235 None:intergenic 15.0%
!! GTTTAAAAAAAATTCTTCAT+GGG + chr5_4:53854251-53854270 None:intergenic 15.0%
!! TGTTTAAAAAAAATTCTTCA+TGG + chr5_4:53854252-53854271 None:intergenic 15.0%
!! ACTCATTAATTAAACTTAAA+TGG - chr5_4:53855030-53855049 Msa0857640:intron 15.0%
!! AATATGTATAGATACAAAAT+TGG - chr5_4:53855471-53855490 Msa0857640:intron 15.0%
!!! TAAATGAAATTTGAAATGAA+AGG - chr5_4:53855639-53855658 Msa0857640:intron 15.0%
!!! ATGATATGTGATTTTTTTAT+TGG - chr5_4:53855836-53855855 Msa0857640:intron 15.0%
!!! TGATATGTGATTTTTTTATT+GGG - chr5_4:53855837-53855856 Msa0857640:intron 15.0%
!! ACTCGATATAATATTATTTG+TGG - chr5_4:53850527-53850546 Msa0857640:intron 20.0%
!! ATTATGATATGTAAATTAGG+GGG + chr5_4:53850853-53850872 None:intergenic 20.0%
!! GAACGATTACAAATATAAAA+GGG + chr5_4:53851214-53851233 None:intergenic 20.0%
!! AGAACGATTACAAATATAAA+AGG + chr5_4:53851215-53851234 None:intergenic 20.0%
!! TCAACTATTATAACTTCTAA+TGG - chr5_4:53851276-53851295 Msa0857640:intron 20.0%
!! GATTGAACAATAATTTACTT+TGG + chr5_4:53851977-53851996 None:intergenic 20.0%
!!! ATATCCATTTTTATGCATTT+TGG + chr5_4:53851999-53852018 None:intergenic 20.0%
!! ATGATTAAAAATGACAACAT+TGG + chr5_4:53852472-53852491 None:intergenic 20.0%
!! TAATAATTTAAGTGTAGTGA+AGG + chr5_4:53852536-53852555 None:intergenic 20.0%
!! TAATGATATATTCATAGACA+TGG - chr5_4:53852584-53852603 Msa0857640:intron 20.0%
!! GAAGATTAAAAAAAAACTAC+CGG - chr5_4:53852636-53852655 Msa0857640:intron 20.0%
!!! AGTAATAATTGTGTTTTTAC+CGG + chr5_4:53852658-53852677 None:intergenic 20.0%
!!! TTTGAATTGTGATATTTTAG+AGG - chr5_4:53852829-53852848 Msa0857640:intron 20.0%
!! AATTTGTGGTACTTATTTAT+AGG + chr5_4:53852867-53852886 None:intergenic 20.0%
!!! ATATATTTTAGAGCAATTTG+TGG + chr5_4:53852881-53852900 None:intergenic 20.0%
!! TGTTTAAAAACTTGAATGTA+TGG - chr5_4:53853110-53853129 Msa0857640:intron 20.0%
!! TTGTAATTGTATTGTATAGA+CGG + chr5_4:53853261-53853280 None:intergenic 20.0%
!! TAGAAACAAATATTATACAC+GGG + chr5_4:53853533-53853552 None:intergenic 20.0%
!! TAAATTTGATAGATAGATAG+AGG + chr5_4:53854104-53854123 None:intergenic 20.0%
!! AGTTTAGTAAAATGTATAAG+AGG - chr5_4:53854719-53854738 Msa0857640:intron 20.0%
!!! TCTAAAATTATTTACTGTGA+GGG + chr5_4:53854859-53854878 None:intergenic 20.0%
!! GTTAACAAAAAGACATAATT+TGG - chr5_4:53854962-53854981 Msa0857640:intron 20.0%
!! ATAATTTGGTAGAGAAAAAA+TGG - chr5_4:53854976-53854995 Msa0857640:intron 20.0%
!!! AACTTAAATGGACTTAAATT+TGG - chr5_4:53855042-53855061 Msa0857640:intron 20.0%
!!! ATGCCTATATCAAATTATTT+TGG + chr5_4:53855775-53855794 None:intergenic 20.0%
!! TTGTAATTATTGTTTCACAT+TGG - chr5_4:53855920-53855939 Msa0857640:CDS 20.0%
!!! AGATCTTTTTCGATGTAAAA+AGG + chr5_4:53850323-53850342 None:intergenic 25.0%
! TTAGTCCTTGAATAAAGATA+TGG - chr5_4:53850350-53850369 Msa0857640:intron 25.0%
! GAATACCATATCTTTATTCA+AGG + chr5_4:53850358-53850377 None:intergenic 25.0%
! AATATGGTTTATCAAACTTC+TGG + chr5_4:53850380-53850399 None:intergenic 25.0%
!! TTTTTAACCCTTTAATATGG+CGG + chr5_4:53850431-53850450 None:intergenic 25.0%
! TTATCAAATAGCAAAAGAGA+AGG - chr5_4:53850754-53850773 Msa0857640:intron 25.0%
! TATCAAATAGCAAAAGAGAA+GGG - chr5_4:53850755-53850774 Msa0857640:intron 25.0%
!! AATATTTGGCTCACAATTAA+CGG + chr5_4:53850819-53850838 None:intergenic 25.0%
!! AAATAAAAGAGAAGGTGTAT+TGG - chr5_4:53851034-53851053 Msa0857640:intron 25.0%
! TATTGGAAGCTATATTATTG+TGG - chr5_4:53851051-53851070 Msa0857640:intron 25.0%
! TTATCTTCTCATAAGTATCT+TGG - chr5_4:53851309-53851328 Msa0857640:intron 25.0%
! ATTACATAAGCTTAATTCCT+TGG + chr5_4:53851493-53851512 None:intergenic 25.0%
! CAATGGAAATTCTGTTAATT+AGG - chr5_4:53851604-53851623 Msa0857640:intron 25.0%
! CAATCCAAAATGCATAAAAA+TGG - chr5_4:53851992-53852011 Msa0857640:intron 25.0%
! TGTAATTGTATTGTATAGAC+GGG + chr5_4:53853260-53853279 None:intergenic 25.0%
! ACTTCTTACTCTTTCATAAT+GGG + chr5_4:53853482-53853501 None:intergenic 25.0%
! AACTTCTTACTCTTTCATAA+TGG + chr5_4:53853483-53853502 None:intergenic 25.0%
! CCATCAATAATTATGTTACA+CGG + chr5_4:53853578-53853597 None:intergenic 25.0%
!!! CTCTAAAATTATTTACTGTG+AGG + chr5_4:53854860-53854879 None:intergenic 25.0%
!!! CTTATCTTTTTTCCTATTTC+CGG - chr5_4:53855067-53855086 Msa0857640:intron 25.0%
!! ACTTCATTTGATTCGTAAAA+AGG - chr5_4:53855206-53855225 Msa0857640:intron 25.0%
! GAGCCAAAATAATTTGATAT+AGG - chr5_4:53855769-53855788 Msa0857640:intron 25.0%
! AGTTATACAACTTATCTCAT+TGG - chr5_4:53855806-53855825 Msa0857640:intron 25.0%
! ATTATTGTTTCACATTGGTA+TGG - chr5_4:53855925-53855944 Msa0857640:CDS 25.0%
! TTATTGTTTCACATTGGTAT+GGG - chr5_4:53855926-53855945 Msa0857640:CDS 25.0%
!! TTAATAGTGGATCACAACAT+GGG + chr5_4:53850038-53850057 None:intergenic 30.0%
ATGTTGTGATCCACTATTAA+GGG - chr5_4:53850038-53850057 Msa0857640:three_prime_UTR 30.0%
! ACAAGAGAAACCAAGTTTTA+TGG + chr5_4:53850072-53850091 None:intergenic 30.0%
ATGATGATCATTGTACAAGA+CGG - chr5_4:53850259-53850278 Msa0857640:CDS 30.0%
! TTTTAACCCTTTAATATGGC+GGG + chr5_4:53850430-53850449 None:intergenic 30.0%
! GAATGAGCATAAATCGATTT+AGG - chr5_4:53850473-53850492 Msa0857640:intron 30.0%
! TGACTATTAACCCTAACTTT+TGG - chr5_4:53850503-53850522 Msa0857640:intron 30.0%
! GACTATTAACCCTAACTTTT+GGG - chr5_4:53850504-53850523 Msa0857640:intron 30.0%
GTAAATTCATGTCACAAAGA+CGG + chr5_4:53850584-53850603 None:intergenic 30.0%
GAAGCTAAGTAAACAATTGT+AGG - chr5_4:53850719-53850738 Msa0857640:intron 30.0%
AAGTAAACAATTGTAGGTTC+TGG - chr5_4:53850725-53850744 Msa0857640:intron 30.0%
TTAACGGTGAAAACTGATAA+AGG + chr5_4:53850803-53850822 None:intergenic 30.0%
GGGTTGTATTTGACAATATT+TGG + chr5_4:53850833-53850852 None:intergenic 30.0%
TAGCAATTTCACAATCTCTA+TGG - chr5_4:53850892-53850911 Msa0857640:intron 30.0%
!!! TGATACGAGTTTTTAGTTGA+TGG + chr5_4:53850977-53850996 None:intergenic 30.0%
AAGATGTTACATTCCGTAAA+AGG + chr5_4:53851131-53851150 None:intergenic 30.0%
AATAGCTGTTAGAAAAGAAC+AGG - chr5_4:53851170-53851189 Msa0857640:intron 30.0%
TTGAAACCATTTGCAAGAAT+AGG + chr5_4:53851376-53851395 None:intergenic 30.0%
CTAACTGGATTAAAGTATGT+TGG + chr5_4:53851632-53851651 None:intergenic 30.0%
CATACTTTAATCCAGTTAGT+TGG - chr5_4:53851633-53851652 Msa0857640:intron 30.0%
TTTAATCCAGTTAGTTGGTT+TGG - chr5_4:53851638-53851657 Msa0857640:intron 30.0%
! TTAATCCAGTTAGTTGGTTT+GGG - chr5_4:53851639-53851658 Msa0857640:intron 30.0%
! ACCTAAACTTGTATGCTTTT+GGG + chr5_4:53851782-53851801 None:intergenic 30.0%
CTAACAACTCTTGTCAATAA+TGG + chr5_4:53851929-53851948 None:intergenic 30.0%
GAATCTATTAGCAATTTGCA+GGG + chr5_4:53852040-53852059 None:intergenic 30.0%
AGAATCTATTAGCAATTTGC+AGG + chr5_4:53852041-53852060 None:intergenic 30.0%
TTGTTGTCTCATAACTAGAT+TGG - chr5_4:53852274-53852293 Msa0857640:intron 30.0%
TGTTGTCTCATAACTAGATT+GGG - chr5_4:53852275-53852294 Msa0857640:intron 30.0%
TTTGATCTTGAATTGATCCT+AGG + chr5_4:53852370-53852389 None:intergenic 30.0%
GACATGGATAAATATGCATT+AGG - chr5_4:53852600-53852619 Msa0857640:intron 30.0%
GTATGCAATGAAAAGTAAAG+TGG + chr5_4:53852904-53852923 None:intergenic 30.0%
GTATTGTATTTACTAACGCA+CGG - chr5_4:53853329-53853348 Msa0857640:intron 30.0%
TATTGTATTTACTAACGCAC+GGG - chr5_4:53853330-53853349 Msa0857640:intron 30.0%
GCATTAATAGCATGTACAAA+AGG - chr5_4:53853405-53853424 Msa0857640:intron 30.0%
CCGTGTAACATAATTATTGA+TGG - chr5_4:53853575-53853594 Msa0857640:intron 30.0%
!! TAGTCTTCAAGTTTTACACA+TGG - chr5_4:53853844-53853863 Msa0857640:intron 30.0%
TTTGATAGATAGATAGAGGA+TGG + chr5_4:53854100-53854119 None:intergenic 30.0%
AATATGAAAGCTGACCTTAA+GGG + chr5_4:53854343-53854362 None:intergenic 30.0%
AACATGTCCATTAAGAAATC+CGG + chr5_4:53855089-53855108 None:intergenic 30.0%
AAATATCACAATGAGTTACC+TGG - chr5_4:53855122-53855141 Msa0857640:intron 30.0%
GTGTTGCATCAATATTGAAA+AGG - chr5_4:53855326-53855345 Msa0857640:intron 30.0%
ACCTATTTGTAGAATTTGTG+TGG - chr5_4:53855379-53855398 Msa0857640:intron 30.0%
ACCACACAAATTCTACAAAT+AGG + chr5_4:53855383-53855402 None:intergenic 30.0%
AATCATGTTTGTTCTTCCTT+AGG + chr5_4:53855412-53855431 None:intergenic 30.0%
!! ATTGGTGTTATTGTACTTAC+CGG - chr5_4:53855489-53855508 Msa0857640:intron 30.0%
TGCACAAACAAAAAAAACAC+CGG + chr5_4:53855511-53855530 None:intergenic 30.0%
! ACTTTTCTGCAAAAACAGAT+TGG - chr5_4:53855550-53855569 Msa0857640:intron 30.0%
ATGATAGAAGAAGATACATG+AGG - chr5_4:53855613-53855632 Msa0857640:intron 30.0%
AGAGAAATAAATTGCGAAAG+AGG - chr5_4:53855673-53855692 Msa0857640:intron 30.0%
TACAACTTATCTCATTGGTA+TGG - chr5_4:53855811-53855830 Msa0857640:intron 30.0%
ACAACTTATCTCATTGGTAT+GGG - chr5_4:53855812-53855831 Msa0857640:intron 30.0%
!! CTTAATAGTGGATCACAACA+TGG + chr5_4:53850039-53850058 None:intergenic 35.0%
CATGTTGTGATCCACTATTA+AGG - chr5_4:53850037-53850056 Msa0857640:three_prime_UTR 35.0%
GGAAATGAAGCCATAAAACT+TGG - chr5_4:53850059-53850078 Msa0857640:three_prime_UTR 35.0%
TGATGATCATTGTACAAGAC+GGG - chr5_4:53850260-53850279 Msa0857640:CDS 35.0%
TTTAACCCTTTAATATGGCG+GGG + chr5_4:53850429-53850448 None:intergenic 35.0%
ATATCGAGTCCCAAAAGTTA+GGG + chr5_4:53850516-53850535 None:intergenic 35.0%
TATATCGAGTCCCAAAAGTT+AGG + chr5_4:53850517-53850536 None:intergenic 35.0%
! ATAGGCTCATCTAAGACATT+AGG - chr5_4:53850629-53850648 Msa0857640:intron 35.0%
! TAGGCTCATCTAAGACATTA+GGG - chr5_4:53850630-53850649 Msa0857640:intron 35.0%
CAGGTTAAGTGCAAGATATA+AGG - chr5_4:53850671-53850690 Msa0857640:intron 35.0%
AAACTGATAAAGGAGCGATT+AGG + chr5_4:53850793-53850812 None:intergenic 35.0%
CTTCAAACTCCAAATACTCA+AGG + chr5_4:53851086-53851105 None:intergenic 35.0%
TGTTACATTCCGTAAAAGGT+CGG + chr5_4:53851127-53851146 None:intergenic 35.0%
ATTGCTCCTATTCTTGCAAA+TGG - chr5_4:53851367-53851386 Msa0857640:intron 35.0%
AGAAAGATGCTTCACTAGAA+CGG + chr5_4:53851416-53851435 None:intergenic 35.0%
!! GAAGCATCTTTCTGGTTATT+CGG - chr5_4:53851423-53851442 Msa0857640:intron 35.0%
CACTCGAAATATAGTTTCCA+AGG - chr5_4:53851473-53851492 Msa0857640:intron 35.0%
TGACCTTTCTTTGCTCTTAA+TGG - chr5_4:53851572-53851591 Msa0857640:intron 35.0%
GTTCCATTAAGAGCAAAGAA+AGG + chr5_4:53851578-53851597 None:intergenic 35.0%
CTTAATGGAACGTAAGTCAA+TGG - chr5_4:53851587-53851606 Msa0857640:intron 35.0%
AAAATCCCAAACCAACTAAC+TGG + chr5_4:53851647-53851666 None:intergenic 35.0%
!!! ACTTGTATGCTTTTGGGATT+AGG + chr5_4:53851776-53851795 None:intergenic 35.0%
! TCCCAAAAGCATACAAGTTT+AGG - chr5_4:53851778-53851797 Msa0857640:intron 35.0%
! CACCTAAACTTGTATGCTTT+TGG + chr5_4:53851783-53851802 None:intergenic 35.0%
GAAGATGAAGTAGTGAAAGT+AGG + chr5_4:53851889-53851908 None:intergenic 35.0%
! CAACTCTTGTCAATAATGGA+TGG + chr5_4:53851925-53851944 None:intergenic 35.0%
AGCACAAGCTCAATTATTTG+TGG - chr5_4:53851950-53851969 Msa0857640:intron 35.0%
GCACAAGCTCAATTATTTGT+GGG - chr5_4:53851951-53851970 Msa0857640:intron 35.0%
AGATTCTAGACCTTGACTAA+TGG - chr5_4:53852054-53852073 Msa0857640:intron 35.0%
GATTCTAGACCTTGACTAAT+GGG - chr5_4:53852055-53852074 Msa0857640:intron 35.0%
AGGATATTACGTTAGATGTG+TGG + chr5_4:53852511-53852530 None:intergenic 35.0%
ATTTAAGTGTAGTGAAGGTG+AGG + chr5_4:53852531-53852550 None:intergenic 35.0%
! ATGTACAAAAGGCATATCAG+AGG - chr5_4:53853416-53853435 Msa0857640:intron 35.0%
GCTGTTATCACTAAAGAGAA+AGG + chr5_4:53853985-53854004 None:intergenic 35.0%
!! ATTCTTCATGGGTTTTGTAG+AGG + chr5_4:53854240-53854259 None:intergenic 35.0%
TTTAAACAAAGCAAGTACGC+CGG - chr5_4:53854264-53854283 Msa0857640:intron 35.0%
GAATATGAAAGCTGACCTTA+AGG + chr5_4:53854344-53854363 None:intergenic 35.0%
!!! CGGCTTATTTTACAGAACAT+CGG - chr5_4:53854625-53854644 Msa0857640:intron 35.0%
!!! GGCTTATTTTACAGAACATC+GGG - chr5_4:53854626-53854645 Msa0857640:intron 35.0%
CCATTAAGAAATCCGGAAAT+AGG + chr5_4:53855082-53855101 None:intergenic 35.0%
CCTATTTCCGGATTTCTTAA+TGG - chr5_4:53855079-53855098 Msa0857640:intron 35.0%
! CCAACAAATGTTCTTTTTGC+AGG + chr5_4:53855176-53855195 None:intergenic 35.0%
CCTGCAAAAAGAACATTTGT+TGG - chr5_4:53855173-53855192 Msa0857640:intron 35.0%
TTTGTGTGGTTATGAACCTA+AGG - chr5_4:53855393-53855412 Msa0857640:intron 35.0%
GACATATCTTGTTGCGAAAG+AGG - chr5_4:53849979-53849998 Msa0857640:three_prime_UTR 40.0%
GGCTTCATTTCCCTTAATAG+TGG + chr5_4:53850051-53850070 None:intergenic 40.0%
! TTTTTCCCCCGCCATATTAA+AGG - chr5_4:53850420-53850439 Msa0857640:intron 40.0%
! TTTTCCCCCGCCATATTAAA+GGG - chr5_4:53850421-53850440 Msa0857640:intron 40.0%
TTAACCCTTTAATATGGCGG+GGG + chr5_4:53850428-53850447 None:intergenic 40.0%
TGCACAATACAACCTTCCAA+TGG - chr5_4:53850604-53850623 Msa0857640:intron 40.0%
TACAACCTTCCAATGGTCAT+AGG - chr5_4:53850611-53850630 Msa0857640:intron 40.0%
TTAGATGAGCCTATGACCAT+TGG + chr5_4:53850623-53850642 None:intergenic 40.0%
! AGGCTCATCTAAGACATTAG+GGG - chr5_4:53850631-53850650 Msa0857640:intron 40.0%
!! ACAATTGTAGGTTCTGGACT+CGG - chr5_4:53850731-53850750 Msa0857640:intron 40.0%
AACTCGTATCAACTCGTTGA+AGG - chr5_4:53850986-53851005 Msa0857640:intron 40.0%
GTTGAAGGAAGAACTCCAAA+TGG - chr5_4:53851001-53851020 Msa0857640:intron 40.0%
CCAAATACTCAAGGTAGACT+TGG + chr5_4:53851077-53851096 None:intergenic 40.0%
CCAAGTCTACCTTGAGTATT+TGG - chr5_4:53851074-53851093 Msa0857640:intron 40.0%
! CCATCAAATCCGACCTTTTA+CGG - chr5_4:53851115-53851134 Msa0857640:intron 40.0%
GAAAAGAACAGGCTTGTGTT+AGG - chr5_4:53851181-53851200 Msa0857640:intron 40.0%
! GTTCTAGTGAAGCATCTTTC+TGG - chr5_4:53851415-53851434 Msa0857640:intron 40.0%
GATGAAGTAGTGAAAGTAGG+AGG + chr5_4:53851886-53851905 None:intergenic 40.0%
CAGGGTCAATTTGAAGATGT+CGG + chr5_4:53852022-53852041 None:intergenic 40.0%
ATCGTTTGTCCCATTAGTCA+AGG + chr5_4:53852067-53852086 None:intergenic 40.0%
GGCTGGCAAAATATCTAGTT+AGG - chr5_4:53852296-53852315 Msa0857640:intron 40.0%
CAACATTGGAGAGAATGTTG+AGG + chr5_4:53852458-53852477 None:intergenic 40.0%
! AATTTTCACATGGTGGCTGA+TGG + chr5_4:53854013-53854032 None:intergenic 40.0%
ATCAGCCACCATGTGAAAAT+TGG - chr5_4:53854012-53854031 Msa0857640:intron 40.0%
! AACGTCCAATTTTCACATGG+TGG + chr5_4:53854020-53854039 None:intergenic 40.0%
! GAGAACGTCCAATTTTCACA+TGG + chr5_4:53854023-53854042 None:intergenic 40.0%
TGATACAGATGACGCTGTTA+TGG + chr5_4:53854072-53854091 None:intergenic 40.0%
TCAAGATCTGCGTTAGAAGT+TGG + chr5_4:53854162-53854181 None:intergenic 40.0%
ACATCTCCTGCAACATTAAG+TGG - chr5_4:53854681-53854700 Msa0857640:intron 40.0%
GTTCTTCCACTTAATGTTGC+AGG + chr5_4:53854690-53854709 None:intergenic 40.0%
! GAGTATTTTGTTCCAGTAGC+AGG + chr5_4:53855014-53855033 None:intergenic 40.0%
ATCACAATGAGTTACCTGGA+TGG - chr5_4:53855126-53855145 Msa0857640:intron 40.0%
!! TGCGAAAGAGGTATTGTTTG+AGG - chr5_4:53855685-53855704 Msa0857640:intron 40.0%
GTGATTCTTGCTGCTATTGC+AGG - chr5_4:53849931-53849950 Msa0857640:three_prime_UTR 45.0%
GCAATCCACCTCCTTATCTT+AGG - chr5_4:53850010-53850029 Msa0857640:three_prime_UTR 45.0%
TCATTGTACAAGACGGGCAA+CGG - chr5_4:53850266-53850285 Msa0857640:CDS 45.0%
ATGAGCCTATGACCATTGGA+AGG + chr5_4:53850619-53850638 None:intergenic 45.0%
! GGCTCATCTAAGACATTAGG+GGG - chr5_4:53850632-53850651 Msa0857640:intron 45.0%
CCGTAAAAGGTCGGATTTGA+TGG + chr5_4:53851118-53851137 None:intergenic 45.0%
GTCTCATAACTAGATTGGGC+TGG - chr5_4:53852279-53852298 Msa0857640:intron 45.0%
ACATTACAACACGTGCCATG+TGG + chr5_4:53853822-53853841 None:intergenic 45.0%
! TGACCTTAAGGGCATATCAG+CGG + chr5_4:53854332-53854351 None:intergenic 45.0%
! GATGTTGTTGTTGTCCATCC+AGG + chr5_4:53855143-53855162 None:intergenic 45.0%
AGAAGCTCTCCCATGTAATG+CGG - chr5_4:53855874-53855893 Msa0857640:CDS 45.0%
AAGCACCAACCGCATTACAT+GGG + chr5_4:53855886-53855905 None:intergenic 45.0%
!!! GTTATTTTTTATAATTTTTT+TGG - chr5_4:53852998-53853017 Msa0857640:intron 5.0%
!! TTAATATTTAAATTATTTCA+TGG - chr5_4:53853365-53853384 Msa0857640:intron 5.0%
GCTATTGCAGGTGCTCTAGT+TGG - chr5_4:53849943-53849962 Msa0857640:three_prime_UTR 50.0%
CAACATGGGCGCCTAAGATA+AGG + chr5_4:53850024-53850043 None:intergenic 50.0%
! TCTAAGACATTAGGGGGCTG+TGG - chr5_4:53850638-53850657 Msa0857640:intron 50.0%
TAAAAATCGTCCACCCCGAC+AGG + chr5_4:53852958-53852977 None:intergenic 50.0%
TTTCACATGGTGGCTGATGG+TGG + chr5_4:53854010-53854029 None:intergenic 50.0%
GGACGTTCTCCACCATATTC+CGG - chr5_4:53854033-53854052 Msa0857640:intron 50.0%
TTATGGTAGCCATCGGTGAC+CGG + chr5_4:53854055-53854074 None:intergenic 50.0%
GACGCTGTTATGGTAGCCAT+CGG + chr5_4:53854062-53854081 None:intergenic 50.0%
! GTTTTTGCCATGGCGGTTTC+TGG + chr5_4:53854301-53854320 None:intergenic 50.0%
! GAACACGGTTTTTGCCATGG+CGG + chr5_4:53854308-53854327 None:intergenic 50.0%
! TGTTGCTGTTAGCCTGCTAC+TGG - chr5_4:53854999-53855018 Msa0857640:intron 50.0%
! GAAGCACCAACCGCATTACA+TGG + chr5_4:53855887-53855906 None:intergenic 50.0%
CATGGGCGCCTAAGATAAGG+AGG + chr5_4:53850021-53850040 None:intergenic 55.0%
GGGCTGTGGTCAAAGAAGTC+AGG - chr5_4:53850652-53850671 Msa0857640:intron 55.0%
! AGAATACCCGTGCTGACGCA+CGG - chr5_4:53852929-53852948 Msa0857640:intron 55.0%
CATCGGTGACCGGAATATGG+TGG + chr5_4:53854045-53854064 None:intergenic 55.0%
CACCATATTCCGGTCACCGA+TGG - chr5_4:53854043-53854062 Msa0857640:intron 55.0%
AGCCATCGGTGACCGGAATA+TGG + chr5_4:53854048-53854067 None:intergenic 55.0%
!! GTTTCTGGTACGGTGGTTGC+CGG + chr5_4:53854286-53854305 None:intergenic 55.0%
!! TGCCATGGCGGTTTCTGGTA+CGG + chr5_4:53854296-53854315 None:intergenic 55.0%
! GGCGAACACGGTTTTTGCCA+TGG + chr5_4:53854311-53854330 None:intergenic 55.0%
TCGCCGCTGATATGCCCTTA+AGG - chr5_4:53854326-53854345 Msa0857640:intron 55.0%
CATCGGGCTCTACTGTTGAC+TGG - chr5_4:53854642-53854661 Msa0857640:intron 55.0%
GCTCTCCCATGTAATGCGGT+TGG - chr5_4:53855878-53855897 Msa0857640:CDS 55.0%
GGGCGCCTAAGATAAGGAGG+TGG + chr5_4:53850018-53850037 None:intergenic 60.0%
! GAATACCCGTGCTGACGCAC+GGG - chr5_4:53852930-53852949 Msa0857640:intron 60.0%
!! CACATGGTGGCTGATGGTGG+TGG + chr5_4:53854007-53854026 None:intergenic 60.0%
!! CATGGCGGTTTCTGGTACGG+TGG + chr5_4:53854293-53854312 None:intergenic 60.0%
CACCGTACCAGAAACCGCCA+TGG - chr5_4:53854291-53854310 Msa0857640:intron 60.0%
GGGCATATCAGCGGCGAACA+CGG + chr5_4:53854323-53854342 None:intergenic 60.0%
AGGTACCCGTGCGTCAGCAC+GGG + chr5_4:53852938-53852957 None:intergenic 65.0%
CAGGTACCCGTGCGTCAGCA+CGG + chr5_4:53852939-53852958 None:intergenic 65.0%
GCTGACGCACGGGTACCTGT+CGG - chr5_4:53852940-53852959 Msa0857640:intron 65.0%
CTGACGCACGGGTACCTGTC+GGG - chr5_4:53852941-53852960 Msa0857640:intron 65.0%
TGACGCACGGGTACCTGTCG+GGG - chr5_4:53852942-53852961 Msa0857640:intron 65.0%
CGCACGGGTACCTGTCGGGG+TGG - chr5_4:53852945-53852964 Msa0857640:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 53849913 53855970 53849913 ID=Msa0857640;Name=Msa0857640
chr5_4 mRNA 53849913 53855970 53849913 ID=Msa0857640-mRNA-1;Parent=Msa0857640;Name=Msa0857640-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0.33|0.66|0|0|3|329|80
chr5_4 exon 53849913 53850351 53849913 ID=Msa0857640-mRNA-1:exon:16718;Parent=Msa0857640-mRNA-1
chr5_4 exon 53854018 53854023 53854018 ID=Msa0857640-mRNA-1:exon:16717;Parent=Msa0857640-mRNA-1
chr5_4 exon 53855844 53855970 53855844 ID=Msa0857640-mRNA-1:exon:16716;Parent=Msa0857640-mRNA-1
chr5_4 CDS 53855844 53855970 53855844 ID=Msa0857640-mRNA-1:cds;Parent=Msa0857640-mRNA-1
chr5_4 CDS 53854018 53854023 53854018 ID=Msa0857640-mRNA-1:cds;Parent=Msa0857640-mRNA-1
chr5_4 CDS 53850242 53850351 53850242 ID=Msa0857640-mRNA-1:cds;Parent=Msa0857640-mRNA-1
chr5_4 three_prime_UTR 53849913 53850241 53849913 ID=Msa0857640-mRNA-1:three_prime_utr;Parent=Msa0857640-mRNA-1
Gene Sequence

>Msa0857640

ATGTTCGTGAAGTTTGTGGTGATTCTTGCTGCTATTGCAGGTGCTCTAGTTGGCAATGTACAAAGTGACATATCTTGTTGCGAAAGAGGAGAAATATGCAATCCACCTCCTTATCTTAGGCGCCCATATTCTCAGAAGAATGTTTTTTTCAACTTTTCTGCAAAAACAGATTGGAGTTTAAGATTACAAAGACATGATGAAAATGAAGAACAAAATGATAGAAGAAGATACATGAGGAAGTAA

Protein sequence

>Msa0857640

MFVKFVVILAAIAGALVGNVQSDISCCERGEICNPPPYLRRPYSQKNVFFNFSAKTDWSLRLQRHDENEEQNDRRRYMRK*