AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0777230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0777230 MtrunA17_Chr5g0432431 95.556 135 6 0 1 135 1 135 1.59e-92 263
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0777230 AT2G30330.1 60.526 114 45 0 22 135 37 150 6.33e-47 149
Msa0777230 AT2G30330.2 49.020 102 51 1 22 123 37 137 5.33e-29 103

Find 27 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGATGATGAATGTGAATT+AGG 0.250869 5_2:-56080616 None:intergenic
TATAATTTACATTCAGAATA+AGG 0.252420 5_2:-56082391 None:intergenic
TGTTTGAACTCACAGGAAAT+TGG 0.285667 5_2:+56082121 Msa0777230:intron
TATTGAACTTAAGAACATTC+TGG 0.317080 5_2:+56080506 None:intergenic
TATTTATTAGCGATTAGTTT+TGG 0.338331 5_2:+56082530 Msa0777230:three_prime_UTR
TGTAGCACTGGTTGTTGATT+TGG 0.339031 5_2:+56082449 Msa0777230:three_prime_UTR
TAAGTATATTTGACAAATCA+TGG 0.376425 5_2:+56082474 Msa0777230:three_prime_UTR
AAGAAAAGCAGAACGCGTTT+CGG 0.387718 5_2:+56080688 Msa0777230:CDS
AAATTGGAGACTTTGAGAAT+TGG 0.394379 5_2:+56082137 Msa0777230:CDS
ACGCGTTTCGGATCTGTTAG+TGG 0.417704 5_2:+56080700 Msa0777230:CDS
TTCACCAAGAGTGATCTTGC+AGG 0.439554 5_2:+56082212 Msa0777230:exon
TGAGAATTGGATGAAGATCA+TGG 0.464193 5_2:+56082150 Msa0777230:CDS
TTGTAAATGATGAATATGAT+TGG 0.472448 5_2:+56082416 Msa0777230:three_prime_UTR
TTGTTTCTCAACAAAATAAG+TGG 0.484512 5_2:+56082344 Msa0777230:three_prime_UTR
TTCTCTTAACACTGCTCTCA+AGG 0.509830 5_2:+56080850 Msa0777230:CDS
ACACGCAGAATCAAAGGGAT+TGG 0.536514 5_2:+56080577 Msa0777230:CDS
GCAACCTGCAAGATCACTCT+TGG 0.544451 5_2:-56082216 None:intergenic
GAACTTAAGAACATTCTGGT+TGG 0.547859 5_2:+56080510 Msa0777230:five_prime_UTR
TGCGAGATTCGTGAAGCAGA+CGG 0.550609 5_2:+56080805 Msa0777230:CDS
TAACACACACGCAGAATCAA+AGG 0.552685 5_2:+56080571 Msa0777230:CDS
GGCATCTGATAATGTAGCAC+TGG 0.553243 5_2:+56082437 Msa0777230:three_prime_UTR
TGTTTCTCAACAAAATAAGT+GGG 0.555171 5_2:+56082345 Msa0777230:three_prime_UTR
AACACACACGCAGAATCAAA+GGG 0.575682 5_2:+56080572 Msa0777230:CDS
CTGTTAGTGGAAGCAGTGAA+TGG 0.587369 5_2:+56080713 Msa0777230:CDS
TGATGTTGGGAATTATGCCT+AGG 0.602251 5_2:-56082297 None:intergenic
TCGTGAAGCAGACGGATCAG+TGG 0.638660 5_2:+56080813 Msa0777230:CDS
TTAGTGGAAGCAGTGAATGG+TGG 0.711454 5_2:+56080716 Msa0777230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTAAAATTTTATTAGATAA+AGG + chr5_2:56082320-56082339 Msa0777230:three_prime_UTR 10.0%
!!! TGTAAAATTTTATTAGATAA+AGG + chr5_2:56082320-56082339 Msa0777230:three_prime_UTR 10.0%
!!! ATAAAATTTTACATGATGTT+GGG - chr5_2:56082313-56082332 None:intergenic 15.0%
!!! AATAAAATTTTACATGATGT+TGG - chr5_2:56082314-56082333 None:intergenic 15.0%
!! TATAATTTACATTCAGAATA+AGG - chr5_2:56082394-56082413 None:intergenic 15.0%
!!! ATAAAATTTTACATGATGTT+GGG - chr5_2:56082313-56082332 None:intergenic 15.0%
!!! AATAAAATTTTACATGATGT+TGG - chr5_2:56082314-56082333 None:intergenic 15.0%
!! TATAATTTACATTCAGAATA+AGG - chr5_2:56082394-56082413 None:intergenic 15.0%
!! TTTGTAAATGTTTATTCTTG+TGG + chr5_2:56081585-56081604 Msa0777230:intron 20.0%
!! TTGTAAATGATGAATATGAT+TGG + chr5_2:56082416-56082435 Msa0777230:three_prime_UTR 20.0%
!! TAAGTATATTTGACAAATCA+TGG + chr5_2:56082474-56082493 Msa0777230:three_prime_UTR 20.0%
!!! TATTTATTAGCGATTAGTTT+TGG + chr5_2:56082530-56082549 Msa0777230:three_prime_UTR 20.0%
!! TTTGTAAATGTTTATTCTTG+TGG + chr5_2:56081585-56081604 Msa0777230:intron 20.0%
!! TTGTAAATGATGAATATGAT+TGG + chr5_2:56082416-56082435 Msa0777230:three_prime_UTR 20.0%
!! TAAGTATATTTGACAAATCA+TGG + chr5_2:56082474-56082493 Msa0777230:three_prime_UTR 20.0%
!!! TATTTATTAGCGATTAGTTT+TGG + chr5_2:56082530-56082549 Msa0777230:three_prime_UTR 20.0%
! AATACACAAAAACAAGTGAA+TGG + chr5_2:56080535-56080554 Msa0777230:exon 25.0%
! GTAGTGTTTGGTAAAATTAA+CGG + chr5_2:56081047-56081066 Msa0777230:intron 25.0%
! AGACATAACATACTTCTATT+CGG - chr5_2:56081451-56081470 None:intergenic 25.0%
! ATTCCTTCTCCAAAAAAATT+TGG + chr5_2:56081518-56081537 Msa0777230:intron 25.0%
! TTAAGGTCGTTAAAGATTTA+AGG + chr5_2:56081815-56081834 Msa0777230:intron 25.0%
! CATATGTGCAATAATAAAGA+CGG + chr5_2:56081948-56081967 Msa0777230:intron 25.0%
! CAAAATTCAATAAAAGACAC+TGG - chr5_2:56081994-56082013 None:intergenic 25.0%
! TAATCTGTATTAGTCAAGTT+AGG + chr5_2:56082026-56082045 Msa0777230:intron 25.0%
!!! AAAATTTTGTTTGAACTCAC+AGG + chr5_2:56082114-56082133 Msa0777230:intron 25.0%
! GATAGAAAAATGAATGGAAA+GGG - chr5_2:56082278-56082297 None:intergenic 25.0%
!! TTGTTTCTCAACAAAATAAG+TGG + chr5_2:56082344-56082363 Msa0777230:three_prime_UTR 25.0%
! TGTTTCTCAACAAAATAAGT+GGG + chr5_2:56082345-56082364 Msa0777230:three_prime_UTR 25.0%
! AATACACAAAAACAAGTGAA+TGG + chr5_2:56080535-56080554 Msa0777230:exon 25.0%
! GTAGTGTTTGGTAAAATTAA+CGG + chr5_2:56081047-56081066 Msa0777230:intron 25.0%
! AGACATAACATACTTCTATT+CGG - chr5_2:56081451-56081470 None:intergenic 25.0%
! ATTCCTTCTCCAAAAAAATT+TGG + chr5_2:56081518-56081537 Msa0777230:intron 25.0%
! TTAAGGTCGTTAAAGATTTA+AGG + chr5_2:56081815-56081834 Msa0777230:intron 25.0%
! CATATGTGCAATAATAAAGA+CGG + chr5_2:56081948-56081967 Msa0777230:intron 25.0%
! CAAAATTCAATAAAAGACAC+TGG - chr5_2:56081994-56082013 None:intergenic 25.0%
! TAATCTGTATTAGTCAAGTT+AGG + chr5_2:56082026-56082045 Msa0777230:intron 25.0%
!!! AAAATTTTGTTTGAACTCAC+AGG + chr5_2:56082114-56082133 Msa0777230:intron 25.0%
! GATAGAAAAATGAATGGAAA+GGG - chr5_2:56082278-56082297 None:intergenic 25.0%
!! TTGTTTCTCAACAAAATAAG+TGG + chr5_2:56082344-56082363 Msa0777230:three_prime_UTR 25.0%
! TGTTTCTCAACAAAATAAGT+GGG + chr5_2:56082345-56082364 Msa0777230:three_prime_UTR 25.0%
! TGTGATGATGAATGTGAATT+AGG - chr5_2:56080619-56080638 None:intergenic 30.0%
ACTATCCTCTATAAGTTCAT+CGG - chr5_2:56080996-56081015 None:intergenic 30.0%
CTGATTGAATTTGTAGTGTT+TGG + chr5_2:56081035-56081054 Msa0777230:intron 30.0%
TAAAGTGACGATTAGAAAAC+AGG + chr5_2:56081157-56081176 Msa0777230:intron 30.0%
CCAATGATTCCACAATATAA+AGG - chr5_2:56081358-56081377 None:intergenic 30.0%
CCTTTATATTGTGGAATCAT+TGG + chr5_2:56081355-56081374 Msa0777230:intron 30.0%
ACATAACATACTTCTATTCG+GGG - chr5_2:56081449-56081468 None:intergenic 30.0%
GACATAACATACTTCTATTC+GGG - chr5_2:56081450-56081469 None:intergenic 30.0%
!!! CAACCAAATTTTTTTGGAGA+AGG - chr5_2:56081524-56081543 None:intergenic 30.0%
!!! CCATCACAACCAAATTTTTT+TGG - chr5_2:56081530-56081549 None:intergenic 30.0%
CCAAAAAAATTTGGTTGTGA+TGG + chr5_2:56081527-56081546 Msa0777230:intron 30.0%
ATTCACCAATAACCCAAAAA+TGG - chr5_2:56081561-56081580 None:intergenic 30.0%
!! TTGTGGTTTGTTCCAAATTA+TGG + chr5_2:56081602-56081621 Msa0777230:intron 30.0%
CTTTATTGTGCACCATAATT+TGG - chr5_2:56081617-56081636 None:intergenic 30.0%
TGTTCATGTTAATGTGCTTA+AGG + chr5_2:56081798-56081817 Msa0777230:intron 30.0%
TAAAGATTTAAGGATGATGC+AGG + chr5_2:56081825-56081844 Msa0777230:intron 30.0%
! AAATTGGAGACTTTGAGAAT+TGG + chr5_2:56082137-56082156 Msa0777230:CDS 30.0%
GGATAGAAAAATGAATGGAA+AGG - chr5_2:56082279-56082298 None:intergenic 30.0%
!! TCCATTCATTTTTCTATCCT+AGG + chr5_2:56082280-56082299 Msa0777230:three_prime_UTR 30.0%
! TGTGATGATGAATGTGAATT+AGG - chr5_2:56080619-56080638 None:intergenic 30.0%
ACTATCCTCTATAAGTTCAT+CGG - chr5_2:56080996-56081015 None:intergenic 30.0%
CTGATTGAATTTGTAGTGTT+TGG + chr5_2:56081035-56081054 Msa0777230:intron 30.0%
TAAAGTGACGATTAGAAAAC+AGG + chr5_2:56081157-56081176 Msa0777230:intron 30.0%
CCAATGATTCCACAATATAA+AGG - chr5_2:56081358-56081377 None:intergenic 30.0%
CCTTTATATTGTGGAATCAT+TGG + chr5_2:56081355-56081374 Msa0777230:intron 30.0%
ACATAACATACTTCTATTCG+GGG - chr5_2:56081449-56081468 None:intergenic 30.0%
GACATAACATACTTCTATTC+GGG - chr5_2:56081450-56081469 None:intergenic 30.0%
!!! CAACCAAATTTTTTTGGAGA+AGG - chr5_2:56081524-56081543 None:intergenic 30.0%
!!! CCATCACAACCAAATTTTTT+TGG - chr5_2:56081530-56081549 None:intergenic 30.0%
CCAAAAAAATTTGGTTGTGA+TGG + chr5_2:56081527-56081546 Msa0777230:intron 30.0%
ATTCACCAATAACCCAAAAA+TGG - chr5_2:56081561-56081580 None:intergenic 30.0%
!! TTGTGGTTTGTTCCAAATTA+TGG + chr5_2:56081602-56081621 Msa0777230:intron 30.0%
CTTTATTGTGCACCATAATT+TGG - chr5_2:56081617-56081636 None:intergenic 30.0%
TGTTCATGTTAATGTGCTTA+AGG + chr5_2:56081798-56081817 Msa0777230:intron 30.0%
TAAAGATTTAAGGATGATGC+AGG + chr5_2:56081825-56081844 Msa0777230:intron 30.0%
! AAATTGGAGACTTTGAGAAT+TGG + chr5_2:56082137-56082156 Msa0777230:CDS 30.0%
GGATAGAAAAATGAATGGAA+AGG - chr5_2:56082279-56082298 None:intergenic 30.0%
!! TCCATTCATTTTTCTATCCT+AGG + chr5_2:56082280-56082299 Msa0777230:three_prime_UTR 30.0%
GAACTTAAGAACATTCTGGT+TGG + chr5_2:56080510-56080529 Msa0777230:five_prime_UTR 35.0%
!!! CTTCGCTTTTTCAGTTTGAT+TGG - chr5_2:56080657-56080676 None:intergenic 35.0%
TATAGCCGATGAACTTATAG+AGG + chr5_2:56080988-56081007 Msa0777230:intron 35.0%
CATCAGTATAGTGTTGCAAT+TGG - chr5_2:56081227-56081246 None:intergenic 35.0%
TGATGTTGATCTGACATAAG+CGG + chr5_2:56081242-56081261 Msa0777230:intron 35.0%
!!! TCCATCCTTTTGGAATCTAT+GGG + chr5_2:56081296-56081315 Msa0777230:intron 35.0%
GGTCACAATCCTTTATATTG+TGG + chr5_2:56081346-56081365 Msa0777230:intron 35.0%
TTGGAGAAGGAATCTAACAA+TGG - chr5_2:56081511-56081530 None:intergenic 35.0%
!!! ATGGTTGTCATGCCATTTTT+GGG + chr5_2:56081546-56081565 Msa0777230:intron 35.0%
!!! TCATGCCATTTTTGGGTTAT+TGG + chr5_2:56081553-56081572 Msa0777230:intron 35.0%
AGGAGTTTGGTTGTTGAAAT+AGG + chr5_2:56081845-56081864 Msa0777230:intron 35.0%
TGAAATAGGCATCAATCTTG+TGG + chr5_2:56081859-56081878 Msa0777230:intron 35.0%
GCAATAATAAAGACGGAGAT+AGG + chr5_2:56081955-56081974 Msa0777230:intron 35.0%
TGTTTGAACTCACAGGAAAT+TGG + chr5_2:56082121-56082140 Msa0777230:intron 35.0%
TGAGAATTGGATGAAGATCA+TGG + chr5_2:56082150-56082169 Msa0777230:CDS 35.0%
GCCTAGGATAGAAAAATGAA+TGG - chr5_2:56082284-56082303 None:intergenic 35.0%
GAACTTAAGAACATTCTGGT+TGG + chr5_2:56080510-56080529 Msa0777230:five_prime_UTR 35.0%
!!! CTTCGCTTTTTCAGTTTGAT+TGG - chr5_2:56080657-56080676 None:intergenic 35.0%
TATAGCCGATGAACTTATAG+AGG + chr5_2:56080988-56081007 Msa0777230:intron 35.0%
CATCAGTATAGTGTTGCAAT+TGG - chr5_2:56081227-56081246 None:intergenic 35.0%
TGATGTTGATCTGACATAAG+CGG + chr5_2:56081242-56081261 Msa0777230:intron 35.0%
!!! TCCATCCTTTTGGAATCTAT+GGG + chr5_2:56081296-56081315 Msa0777230:intron 35.0%
GGTCACAATCCTTTATATTG+TGG + chr5_2:56081346-56081365 Msa0777230:intron 35.0%
TTGGAGAAGGAATCTAACAA+TGG - chr5_2:56081511-56081530 None:intergenic 35.0%
!!! ATGGTTGTCATGCCATTTTT+GGG + chr5_2:56081546-56081565 Msa0777230:intron 35.0%
!!! TCATGCCATTTTTGGGTTAT+TGG + chr5_2:56081553-56081572 Msa0777230:intron 35.0%
AGGAGTTTGGTTGTTGAAAT+AGG + chr5_2:56081845-56081864 Msa0777230:intron 35.0%
TGAAATAGGCATCAATCTTG+TGG + chr5_2:56081859-56081878 Msa0777230:intron 35.0%
GCAATAATAAAGACGGAGAT+AGG + chr5_2:56081955-56081974 Msa0777230:intron 35.0%
TGTTTGAACTCACAGGAAAT+TGG + chr5_2:56082121-56082140 Msa0777230:intron 35.0%
TGAGAATTGGATGAAGATCA+TGG + chr5_2:56082150-56082169 Msa0777230:CDS 35.0%
GCCTAGGATAGAAAAATGAA+TGG - chr5_2:56082284-56082303 None:intergenic 35.0%
TAACACACACGCAGAATCAA+AGG + chr5_2:56080571-56080590 Msa0777230:CDS 40.0%
AACACACACGCAGAATCAAA+GGG + chr5_2:56080572-56080591 Msa0777230:CDS 40.0%
AAGAAAAGCAGAACGCGTTT+CGG + chr5_2:56080688-56080707 Msa0777230:CDS 40.0%
TTCTCTTAACACTGCTCTCA+AGG + chr5_2:56080850-56080869 Msa0777230:CDS 40.0%
! GTCACTTTATCACGAGCTTA+CGG - chr5_2:56081146-56081165 None:intergenic 40.0%
ATAAGCGGCTTCTTCTTATG+TGG + chr5_2:56081257-56081276 Msa0777230:intron 40.0%
TAAGCGGCTTCTTCTTATGT+GGG + chr5_2:56081258-56081277 Msa0777230:intron 40.0%
!!! CTCCATCCTTTTGGAATCTA+TGG + chr5_2:56081295-56081314 Msa0777230:intron 40.0%
!! CTATTCGGGGCTTTAGAAAA+AGG - chr5_2:56081436-56081455 None:intergenic 40.0%
!!! GATGGTTGTCATGCCATTTT+TGG + chr5_2:56081545-56081564 Msa0777230:intron 40.0%
CTCAATCAACTCAAGAAAGC+AGG - chr5_2:56081654-56081673 None:intergenic 40.0%
TTAAGGATGATGCAGGAGTT+TGG + chr5_2:56081832-56081851 Msa0777230:intron 40.0%
TGATGTTGGGAATTATGCCT+AGG - chr5_2:56082300-56082319 None:intergenic 40.0%
!! TGTAGCACTGGTTGTTGATT+TGG + chr5_2:56082449-56082468 Msa0777230:three_prime_UTR 40.0%
TAACACACACGCAGAATCAA+AGG + chr5_2:56080571-56080590 Msa0777230:CDS 40.0%
AACACACACGCAGAATCAAA+GGG + chr5_2:56080572-56080591 Msa0777230:CDS 40.0%
AAGAAAAGCAGAACGCGTTT+CGG + chr5_2:56080688-56080707 Msa0777230:CDS 40.0%
TTCTCTTAACACTGCTCTCA+AGG + chr5_2:56080850-56080869 Msa0777230:CDS 40.0%
! GTCACTTTATCACGAGCTTA+CGG - chr5_2:56081146-56081165 None:intergenic 40.0%
ATAAGCGGCTTCTTCTTATG+TGG + chr5_2:56081257-56081276 Msa0777230:intron 40.0%
TAAGCGGCTTCTTCTTATGT+GGG + chr5_2:56081258-56081277 Msa0777230:intron 40.0%
!!! CTCCATCCTTTTGGAATCTA+TGG + chr5_2:56081295-56081314 Msa0777230:intron 40.0%
!! CTATTCGGGGCTTTAGAAAA+AGG - chr5_2:56081436-56081455 None:intergenic 40.0%
!!! GATGGTTGTCATGCCATTTT+TGG + chr5_2:56081545-56081564 Msa0777230:intron 40.0%
CTCAATCAACTCAAGAAAGC+AGG - chr5_2:56081654-56081673 None:intergenic 40.0%
TTAAGGATGATGCAGGAGTT+TGG + chr5_2:56081832-56081851 Msa0777230:intron 40.0%
TGATGTTGGGAATTATGCCT+AGG - chr5_2:56082300-56082319 None:intergenic 40.0%
!! TGTAGCACTGGTTGTTGATT+TGG + chr5_2:56082449-56082468 Msa0777230:three_prime_UTR 40.0%
ACACGCAGAATCAAAGGGAT+TGG + chr5_2:56080577-56080596 Msa0777230:CDS 45.0%
CTGTTAGTGGAAGCAGTGAA+TGG + chr5_2:56080713-56080732 Msa0777230:CDS 45.0%
TTAGTGGAAGCAGTGAATGG+TGG + chr5_2:56080716-56080735 Msa0777230:CDS 45.0%
ACTTTATCACGAGCTTACGG+TGG - chr5_2:56081143-56081162 None:intergenic 45.0%
AAGCGGCTTCTTCTTATGTG+GGG + chr5_2:56081259-56081278 Msa0777230:intron 45.0%
CAAAAGGATGGAGAGTCATG+TGG - chr5_2:56081288-56081307 None:intergenic 45.0%
! CACATGACTCTCCATCCTTT+TGG + chr5_2:56081286-56081305 Msa0777230:intron 45.0%
GCCCATAGATTCCAAAAGGA+TGG - chr5_2:56081300-56081319 None:intergenic 45.0%
TCGAGCCCATAGATTCCAAA+AGG - chr5_2:56081304-56081323 None:intergenic 45.0%
TGATCTTCGCTGCAACATCA+TGG - chr5_2:56081397-56081416 None:intergenic 45.0%
GGCACACTTACACTGACAAA+TGG + chr5_2:56081880-56081899 Msa0777230:intron 45.0%
TTCACCAAGAGTGATCTTGC+AGG + chr5_2:56082212-56082231 Msa0777230:exon 45.0%
! GGCATCTGATAATGTAGCAC+TGG + chr5_2:56082437-56082456 Msa0777230:three_prime_UTR 45.0%
ACACGCAGAATCAAAGGGAT+TGG + chr5_2:56080577-56080596 Msa0777230:CDS 45.0%
CTGTTAGTGGAAGCAGTGAA+TGG + chr5_2:56080713-56080732 Msa0777230:CDS 45.0%
TTAGTGGAAGCAGTGAATGG+TGG + chr5_2:56080716-56080735 Msa0777230:CDS 45.0%
ACTTTATCACGAGCTTACGG+TGG - chr5_2:56081143-56081162 None:intergenic 45.0%
AAGCGGCTTCTTCTTATGTG+GGG + chr5_2:56081259-56081278 Msa0777230:intron 45.0%
CAAAAGGATGGAGAGTCATG+TGG - chr5_2:56081288-56081307 None:intergenic 45.0%
! CACATGACTCTCCATCCTTT+TGG + chr5_2:56081286-56081305 Msa0777230:intron 45.0%
GCCCATAGATTCCAAAAGGA+TGG - chr5_2:56081300-56081319 None:intergenic 45.0%
TCGAGCCCATAGATTCCAAA+AGG - chr5_2:56081304-56081323 None:intergenic 45.0%
TGATCTTCGCTGCAACATCA+TGG - chr5_2:56081397-56081416 None:intergenic 45.0%
GGCACACTTACACTGACAAA+TGG + chr5_2:56081880-56081899 Msa0777230:intron 45.0%
TTCACCAAGAGTGATCTTGC+AGG + chr5_2:56082212-56082231 Msa0777230:exon 45.0%
! GGCATCTGATAATGTAGCAC+TGG + chr5_2:56082437-56082456 Msa0777230:three_prime_UTR 45.0%
ACGCGTTTCGGATCTGTTAG+TGG + chr5_2:56080700-56080719 Msa0777230:CDS 50.0%
TGCGAGATTCGTGAAGCAGA+CGG + chr5_2:56080805-56080824 Msa0777230:CDS 50.0%
AGCGGCTTCTTCTTATGTGG+GGG + chr5_2:56081260-56081279 Msa0777230:intron 50.0%
! AGACCGTGTTGCTACTATCG+CGG + chr5_2:56081325-56081344 Msa0777230:intron 50.0%
TGACCGCGATAGTAGCAACA+CGG - chr5_2:56081331-56081350 None:intergenic 50.0%
GCAACCTGCAAGATCACTCT+TGG - chr5_2:56082219-56082238 None:intergenic 50.0%
ACGCGTTTCGGATCTGTTAG+TGG + chr5_2:56080700-56080719 Msa0777230:CDS 50.0%
TGCGAGATTCGTGAAGCAGA+CGG + chr5_2:56080805-56080824 Msa0777230:CDS 50.0%
AGCGGCTTCTTCTTATGTGG+GGG + chr5_2:56081260-56081279 Msa0777230:intron 50.0%
! AGACCGTGTTGCTACTATCG+CGG + chr5_2:56081325-56081344 Msa0777230:intron 50.0%
TGACCGCGATAGTAGCAACA+CGG - chr5_2:56081331-56081350 None:intergenic 50.0%
GCAACCTGCAAGATCACTCT+TGG - chr5_2:56082219-56082238 None:intergenic 50.0%
TCGTGAAGCAGACGGATCAG+TGG + chr5_2:56080813-56080832 Msa0777230:CDS 55.0%
TCGTGAAGCAGACGGATCAG+TGG + chr5_2:56080813-56080832 Msa0777230:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 56080508 56082553 56080508 ID=Msa0777230;Name=Msa0777230
chr5_2 mRNA 56080508 56082553 56080508 ID=Msa0777230-mRNA-1;Parent=Msa0777230;Name=Msa0777230-mRNA-1;_AED=0.02;_eAED=0.02;_QI=46|1|1|1|1|1|2|328|135
chr5_2 exon 56080508 56080871 56080508 ID=Msa0777230-mRNA-1:exon:16564;Parent=Msa0777230-mRNA-1
chr5_2 exon 56082136 56082553 56082136 ID=Msa0777230-mRNA-1:exon:16565;Parent=Msa0777230-mRNA-1
chr5_2 five_prime_UTR 56080508 56080553 56080508 ID=Msa0777230-mRNA-1:five_prime_utr;Parent=Msa0777230-mRNA-1
chr5_2 CDS 56080554 56080871 56080554 ID=Msa0777230-mRNA-1:cds;Parent=Msa0777230-mRNA-1
chr5_2 CDS 56082136 56082225 56082136 ID=Msa0777230-mRNA-1:cds;Parent=Msa0777230-mRNA-1
chr5_2 three_prime_UTR 56082226 56082553 56082226 ID=Msa0777230-mRNA-1:three_prime_utr;Parent=Msa0777230-mRNA-1
Gene Sequence

>Msa0777230

ATGGAAGAACGCGATGTTAACACACACGCAGAATCAAAGGGATTGGAAGATTCATTACAAAACCTAATTCACATTCATCATCACAAATCTCTCATTCTCACCAATCAAACTGAAAAAGCGAAGAAAGATGCAATAAGAAAAGCAGAACGCGTTTCGGATCTGTTAGTGGAAGCAGTGAATGGTGGTGTTCAAGATTCGTTTATTTATCAGAAGAGAATTGAGCTCGAAATTCGAGCTCTTGCTGTTACTATTGCGAGATTCGTGAAGCAGACGGATCAGTGGCTTAATGCTACTCATTCTCTTAACACTGCTCTCAAGGAAATTGGAGACTTTGAGAATTGGATGAAGATCATGGAATACGATTTTAAAAGTATCAATGCAGCTATACACAATATTCACCAAGAGTGA

Protein sequence

>Msa0777230

MEERDVNTHAESKGLEDSLQNLIHIHHHKSLILTNQTEKAKKDAIRKAERVSDLLVEAVNGGVQDSFIYQKRIELEIRALAVTIARFVKQTDQWLNATHSLNTALKEIGDFENWMKIMEYDFKSINAAIHNIHQE*