AlfalfaGEDB | Msa1035750

M. sativa cultivar zhongmu-4 / Msa1035750

KEGG: K12817
GO: GO:0000350 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008298 GO:0008380 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0046700 GO:0048519 GO:0050789 GO:0051179 GO:0051641 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0071020 GO:0071021 GO:0071025 GO:0071027 GO:0071028 GO:0071030 GO:0071033 GO:0071048 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901361 GO:1901575 GO:1990904
PFAM: PF08799.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1035750	XP_013449742.1	99.027	411	4	0	1	411	1	411	0.0	839

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1035750	sp\|Q99633\|PRP18_HUMAN	35.204	392	188	9	1	376	1	342	7.84e-63	208

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1035750	A0A072UD53	99.027	411	4	0	1	411	1	411	0.0	839

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0115790	Msa1035750	0.809064	2.276047e-50	-8.615850e-47
Msa0137480	Msa1035750	0.804379	2.222592e-49	-8.615850e-47
Msa0878220	Msa1035750	0.810473	1.132670e-50	-8.615850e-47
Msa1035750	Msa1117240	0.808352	3.230351e-50	-8.615850e-47
Msa1035750	Msa1341060	0.819662	1.032380e-52	-8.615850e-47
Msa1035750	Msa1392980	0.804293	2.315797e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1035750	MtrunA17_Chr7g0259901	99.027	411	4	0	1	411	1	411	0.0	839

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1035750	AT1G03140.1	70.519	424	108	3	1	411	1	420	0.0	563
Msa1035750	AT1G54590.1	65.411	292	76	7	122	407	85	357	6.24e-127	371

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Find 136 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAATTAACTATCTCT+TGG	0.424273	7_1:-71729078	None:intergenic
AAACAACCTGTGACGTTATT+CGG	0.305283	7_1:+71725371	Msa1035750:CDS
AAGAAGTCATCCGCCGTCTC+CGG	0.452806	7_1:+71725342	Msa1035750:CDS
AAGCGGCAGAAGGCGGAGGA+TGG	0.550000	7_1:+71725551	Msa1035750:CDS
AATGGACCATTATATCAGGC+TGG	0.593837	7_1:+71728753	Msa1035750:CDS
AATTAACTATCTCTTGGAGC+AGG	0.536566	7_1:-71729072	None:intergenic
ACAATGATGCGAGACTCGAT+CGG	0.606783	7_1:+71725399	Msa1035750:CDS
ACAGGAGTTGCGTGAGATGG+CGG	0.582423	7_1:+71725745	Msa1035750:CDS
ACGGAGAAGCGGACGGCTAA+AGG	0.445518	7_1:+71725770	Msa1035750:CDS
ACTGCTTTAGATGGCAGTGT+CGG	0.551623	7_1:-71728946	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGGATTTGAAAAGGATGA+AGG	+	chr7_1:71725652-71725671	Msa1035750:CDS	30.0%
TTCCTACAAAACTTAAACAG+CGG	-	chr7_1:71725842-71725861	None:intergenic	30.0%
AAACAATTTGTAAGCATGTC+CGG	-	chr7_1:71726592-71726611	None:intergenic	30.0%
TGGACTTGAAACATATGATT+TGG	+	chr7_1:71726639-71726658	Msa1035750:intron	30.0%
GGGAGAGTTTCTTTAAATTT+AGG	-	chr7_1:71726851-71726870	None:intergenic	30.0%
GAGGTTTACATGGATAAAAT+TGG	-	chr7_1:71727096-71727115	None:intergenic	30.0%
TTACATGAATAAAGTGGATG+AGG	-	chr7_1:71727115-71727134	None:intergenic	30.0%
TGAGGTTTACATGAATAAAG+TGG	-	chr7_1:71727121-71727140	None:intergenic	30.0%
TTACATGAATAAAGTGGATG+AGG	-	chr7_1:71727115-71727134	None:intergenic	30.0%
ATCAGAGTACAGTACAAAAT+TGG	-	chr7_1:71727242-71727261	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	71724937	71729425	71724937	ID=Msa1035750;Name=Msa1035750
chr7_1	mRNA	71724937	71729425	71724937	ID=Msa1035750-mRNA-1;Parent=Msa1035750;Name=Msa1035750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=107\|1\|1\|1\|1\|1\|2\|333\|411
chr7_1	exon	71724937	71725865	71724937	ID=Msa1035750-mRNA-1:exon:17356;Parent=Msa1035750-mRNA-1
chr7_1	exon	71728679	71729425	71728679	ID=Msa1035750-mRNA-1:exon:17357;Parent=Msa1035750-mRNA-1
chr7_1	five_prime_UTR	71724937	71725043	71724937	ID=Msa1035750-mRNA-1:five_prime_utr;Parent=Msa1035750-mRNA-1
chr7_1	CDS	71725044	71725865	71725044	ID=Msa1035750-mRNA-1:cds;Parent=Msa1035750-mRNA-1
chr7_1	CDS	71728679	71729092	71728679	ID=Msa1035750-mRNA-1:cds;Parent=Msa1035750-mRNA-1
chr7_1	three_prime_UTR	71729093	71729425	71729093	ID=Msa1035750-mRNA-1:three_prime_utr;Parent=Msa1035750-mRNA-1

Gene Sequence

>Msa1035750

ATGGACCTTCTAAAGCAAGAGCTTCTCAAAAAACGCCAATCCCTAGCCGAAGAAACCGGCGGCAAGAAATTCTTCAAACGCTCCGAGATCCAACAGAAACAAATCCAAAAACTCCGCGAAGAAGAAAAACGCGAACTCGAAGCCAAATCCAAAAAACGCAACTCAACCACCTCCGACACCGTCTCCACCGTAACAACCTCATCAACCAACGCTTCCTCCTCCGTCACCTCCGCCGCTGCTTCATCCAGCGCTTCCCTCCCCGACGAACAAAACATAGACAGCCTCGTCCTTCCTAAACAAGAAGTCATCCGCCGTCTCCGGTTTCTAAAACAACCTGTGACGTTATTCGGCGAAGACAATGATGCGAGACTCGATCGGCTTAAATACGTTCTCAAAGCTGGATTGTTTGAAGTGGATAGTGATATGACGGAAGGACAGACGAATGATTTCTTGCGTGATATTGCGGAGTTGAGGAAGAGGCAGAAGACGGGGATTTTGAGTGATAGGAAGCGGCAGAAGGCGGAGGATGGTGCTGCTGAGGATGGTGATGGTGGTGCTGGTGATGATGATTTGAGTGATTGTGGTGGATCTAGTGGTGGTGATAATGATAAGGATTTGAAAAGGATGAAGGCGAATTTCGATGAGCTGTGTGATGAGGATAAGATTTTGGTGTTTTTTAAGAAGCTGTTGAATGAGTGGAAACAGGAGTTGCGTGAGATGGCGGAGACGGAGAAGCGGACGGCTAAAGGGAAGTCTATGGTTGCTACCTTCAAGCAGTGTGCGCGATACTTGAACCCGCTGTTTAAGTTTTGTAGGAAAAAGGTTCTTCAGGATGACATTCGGCAGGCACTAATGTTGATGGTTGACTGCTGTATGAGGCGAGATTATCTGGCTGCAATGGACCATTATATCAGGCTGGCTATCGGGAATGCTCCCTGGCCTATCGGTGTTACTATGGTTGGTATTCACGAAAGATCTGCCCGTGAAAAGATCTACACAAATAGTGTTGCTCACATCATGAATGATGAAACAACTCGTAAGTACTTACAATCAGTGAAGAGGTTAATGACATTTTGCCAACGGCGTTACCCGACACTGCCATCTAAAGCAGTTGAGTTTAACAGTTTGGCAAATGGGAGTGATCTGCAGTCACTTTTAGCAGAAGAGAGATTTAGTGGGGGCAATCAGTCGTCTGAGGAGAGGCTTAGGATAATGCCTGCTCCAAGAGATAGTTAA

Protein sequence

>Msa1035750

MDLLKQELLKKRQSLAEETGGKKFFKRSEIQQKQIQKLREEEKRELEAKSKKRNSTTSDTVSTVTTSSTNASSSVTSAAASSSASLPDEQNIDSLVLPKQEVIRRLRFLKQPVTLFGEDNDARLDRLKYVLKAGLFEVDSDMTEGQTNDFLRDIAELRKRQKTGILSDRKRQKAEDGAAEDGDGGAGDDDLSDCGGSSGGDNDKDLKRMKANFDELCDEDKILVFFKKLLNEWKQELREMAETEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLQDDIRQALMLMVDCCMRRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTLPSKAVEFNSLANGSDLQSLLAEERFSGGNQSSEERLRIMPAPRDS*