Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038350 | XP_003626454.1 | 95.918 | 392 | 11 | 4 | 1 | 390 | 1 | 389 | 0.0 | 752 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038350 | sp|Q99090|CPRF2_PETCR | 51.478 | 406 | 159 | 14 | 1 | 385 | 1 | 389 | 5.02e-108 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038350 | G7L1X5 | 95.918 | 392 | 11 | 4 | 1 | 390 | 1 | 389 | 0.0 | 752 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1038350 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046950 | Msa1038350 | 0.868499 | 6.239325e-66 | -8.615850e-47 |
| Msa0403750 | Msa1038350 | 0.818285 | 2.123022e-52 | -8.615850e-47 |
| Msa1038350 | Msa1087890 | 0.800614 | 1.326769e-48 | -8.615850e-47 |
| Msa1038350 | Msa1129420 | 0.870673 | 1.221522e-66 | -8.615850e-47 |
| Msa1038350 | Msa1385970 | 0.804536 | 2.060666e-49 | -8.615850e-47 |
| Msa1038350 | Msa1417110 | 0.803706 | 3.066559e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038350 | MtrunA17_Chr7g0274141 | 95.918 | 392 | 11 | 4 | 1 | 390 | 1 | 389 | 0.0 | 752 |
| Msa1038350 | MtrunA17_Chr1g0190761 | 56.020 | 407 | 151 | 12 | 1 | 386 | 1 | 400 | 1.69e-127 | 373 |
| Msa1038350 | MtrunA17_Chr3g0139301 | 52.174 | 138 | 59 | 3 | 150 | 280 | 76 | 213 | 5.63e-31 | 119 |
| Msa1038350 | MtrunA17_Chr1g0147491 | 51.724 | 145 | 59 | 3 | 150 | 285 | 117 | 259 | 2.90e-25 | 105 |
| Msa1038350 | MtrunA17_Chr3g0139571 | 58.904 | 73 | 30 | 0 | 195 | 267 | 2 | 74 | 2.49e-17 | 76.3 |
| Msa1038350 | MtrunA17_Chr4g0035414 | 40.000 | 115 | 59 | 1 | 172 | 286 | 17 | 121 | 2.91e-16 | 75.5 |
| Msa1038350 | MtrunA17_Chr3g0144941 | 39.785 | 93 | 56 | 0 | 192 | 284 | 27 | 119 | 1.00e-14 | 71.2 |
| Msa1038350 | MtrunA17_Chr8g0341311 | 40.816 | 98 | 53 | 1 | 170 | 267 | 54 | 146 | 6.04e-14 | 69.7 |
| Msa1038350 | MtrunA17_Chr8g0378901 | 35.238 | 105 | 68 | 0 | 180 | 284 | 20 | 124 | 9.27e-14 | 68.6 |
| Msa1038350 | MtrunA17_Chr7g0225661 | 40.816 | 98 | 53 | 1 | 170 | 267 | 64 | 156 | 9.97e-14 | 69.3 |
| Msa1038350 | MtrunA17_Chr6g0456061 | 47.297 | 74 | 39 | 0 | 195 | 268 | 90 | 163 | 6.90e-13 | 67.0 |
| Msa1038350 | MtrunA17_Chr1g0155551 | 29.114 | 158 | 89 | 3 | 164 | 308 | 9 | 156 | 5.93e-12 | 63.5 |
| Msa1038350 | MtrunA17_Chr7g0220571 | 42.857 | 91 | 44 | 1 | 177 | 267 | 77 | 159 | 4.09e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038350 | AT5G28770.2 | 44.845 | 388 | 130 | 14 | 1 | 383 | 1 | 309 | 2.30e-71 | 226 |
| Msa1038350 | AT5G28770.1 | 44.531 | 384 | 130 | 14 | 1 | 383 | 1 | 302 | 1.64e-67 | 216 |
| Msa1038350 | AT5G28770.3 | 47.985 | 273 | 90 | 9 | 1 | 268 | 1 | 226 | 1.20e-53 | 178 |
| Msa1038350 | AT4G02640.3 | 36.335 | 322 | 157 | 7 | 1 | 284 | 1 | 312 | 3.60e-38 | 142 |
| Msa1038350 | AT3G54620.1 | 34.400 | 375 | 170 | 14 | 1 | 324 | 1 | 350 | 4.79e-38 | 141 |
| Msa1038350 | AT4G02640.4 | 36.335 | 322 | 151 | 7 | 1 | 284 | 1 | 306 | 5.17e-38 | 141 |
| Msa1038350 | AT4G02640.2 | 36.335 | 322 | 157 | 7 | 1 | 284 | 1 | 312 | 5.22e-38 | 142 |
| Msa1038350 | AT4G02640.1 | 36.335 | 322 | 151 | 7 | 1 | 284 | 1 | 306 | 7.67e-38 | 141 |
| Msa1038350 | AT5G24800.1 | 54.478 | 134 | 51 | 4 | 152 | 276 | 71 | 203 | 1.68e-35 | 132 |
| Msa1038350 | AT5G28770.4 | 43.590 | 234 | 80 | 9 | 1 | 229 | 1 | 187 | 5.72e-31 | 118 |
| Msa1038350 | AT3G54620.3 | 32.800 | 375 | 159 | 16 | 1 | 324 | 1 | 333 | 9.49e-26 | 107 |
| Msa1038350 | AT3G30530.1 | 39.796 | 98 | 56 | 1 | 170 | 267 | 59 | 153 | 6.09e-13 | 67.0 |
| Msa1038350 | AT2G04038.1 | 42.857 | 98 | 51 | 1 | 170 | 267 | 54 | 146 | 9.72e-13 | 66.2 |
| Msa1038350 | AT1G75390.1 | 37.963 | 108 | 62 | 1 | 193 | 300 | 39 | 141 | 1.08e-12 | 66.2 |
| Msa1038350 | AT2G18160.1 | 39.759 | 83 | 50 | 0 | 192 | 274 | 28 | 110 | 2.06e-12 | 65.5 |
| Msa1038350 | AT1G13600.1 | 38.776 | 98 | 54 | 1 | 170 | 267 | 67 | 158 | 2.34e-11 | 63.2 |
Find 91 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCAGGATGCTCTCTAAT+AGG | 0.224164 | 7_1:-75166601 | Msa1038350:intron |
| GAGAAAGAAAGACAAGAAAA+TGG | 0.227493 | 7_1:-75168511 | Msa1038350:exon |
| GTAGTAGAATGCGGCCCTTC+TGG | 0.234391 | 7_1:-75167154 | Msa1038350:intron |
| CTGAAATAACGGAGCAATAT+TGG | 0.250912 | 7_1:-75168470 | Msa1038350:CDS |
| TATTGATTCTGAGGATTATC+AGG | 0.285549 | 7_1:-75168256 | Msa1038350:CDS |
| ATTGTAACAGCAGGTTTCTT+TGG | 0.288769 | 7_1:+75167070 | None:intergenic |
| GAGACAGTTAAAAGATTTAC+TGG | 0.291659 | 7_1:-75165908 | Msa1038350:CDS |
| ATATGTTCCAAACATGCTTC+TGG | 0.308555 | 7_1:+75165361 | None:intergenic |
| CCATCTTATCCTTCTGAACT+TGG | 0.332509 | 7_1:-75167354 | Msa1038350:CDS |
| CTCATGGCAATAGGGATCTT+TGG | 0.341962 | 7_1:-75167409 | Msa1038350:intron |
| AATTCTCCCAGAAGCATGTT+TGG | 0.344998 | 7_1:-75165368 | Msa1038350:three_prime_UTR |
| AATTCCTGGAGATAGGAATT+AGG | 0.346220 | 7_1:-75165417 | Msa1038350:three_prime_UTR |
| CCTGCCACGGGTGGCTAGCT+TGG | 0.382757 | 7_1:-75165618 | Msa1038350:CDS |
| GACATTAGATTATTCGATAA+GGG | 0.396715 | 7_1:+75165752 | None:intergenic |
| AAGATATCAAAGTTGCTGTT+GGG | 0.398915 | 7_1:-75167105 | Msa1038350:CDS |
| TTTCAGGATGCTCTCTAATA+GGG | 0.402739 | 7_1:-75166600 | Msa1038350:intron |
| TCCTTCTGAACTTGGACCTC+TGG | 0.404582 | 7_1:-75167346 | Msa1038350:CDS |
| ATTCTATCACTTGTCTTCTT+CGG | 0.406886 | 7_1:+75165565 | None:intergenic |
| TATTAGGTCTCTGAATTAAG+AGG | 0.408366 | 7_1:-75166410 | Msa1038350:intron |
| TGCTATTTATTTGAAAGTTT+AGG | 0.413601 | 7_1:-75165487 | Msa1038350:three_prime_UTR |
| GCTCAAAAGTCAACAAGAAT+AGG | 0.417159 | 7_1:+75165464 | None:intergenic |
| GTTGAAGTTGAAGATGAAGA+AGG | 0.422904 | 7_1:+75168321 | None:intergenic |
| CTTAGATTAATTAGATATGA+TGG | 0.427179 | 7_1:-75165256 | Msa1038350:three_prime_UTR |
| CCAAGCTAGCCACCCGTGGC+AGG | 0.428000 | 7_1:+75165618 | None:intergenic |
| GGACATTAGATTATTCGATA+AGG | 0.443150 | 7_1:+75165751 | None:intergenic |
| ATGGGAATGTCATTATTTGA+TGG | 0.455802 | 7_1:-75165845 | Msa1038350:CDS |
| GAGATACAACAAAGATGAAT+CGG | 0.458250 | 7_1:-75168422 | Msa1038350:CDS |
| GATGGTTGTGATCCATTGTC+AGG | 0.462284 | 7_1:+75167372 | None:intergenic |
| TATGTTCCAAACATGCTTCT+GGG | 0.465520 | 7_1:+75165362 | None:intergenic |
| ACAGCAGGTGGGAACAAGAT+AGG | 0.465620 | 7_1:-75165653 | Msa1038350:CDS |
| GGGATCTTTGGTCAAATCTC+AGG | 0.465850 | 7_1:-75167397 | Msa1038350:CDS |
| AAAGATATCAAAGTTGCTGT+TGG | 0.472379 | 7_1:-75167106 | Msa1038350:CDS |
| CTGGGAAAATTCCTGGAGAT+AGG | 0.474134 | 7_1:-75165424 | Msa1038350:three_prime_UTR |
| GAGGGAGAGATTAATATGAA+TGG | 0.483459 | 7_1:-75167007 | Msa1038350:CDS |
| AGAAACCTGCTGTTACAATC+AGG | 0.485844 | 7_1:-75167066 | Msa1038350:CDS |
| GGACCTCTGGCTACTTTGAA+AGG | 0.489971 | 7_1:-75167333 | Msa1038350:intron |
| AATGTCTGAGGTATCATCAA+TGG | 0.491343 | 7_1:-75165864 | Msa1038350:CDS |
| GGCGCAAGCAAGATCAAGCT+TGG | 0.492090 | 7_1:+75168221 | None:intergenic |
| GCAGGTTTCTTTGGCATGCA+AGG | 0.503853 | 7_1:+75167079 | None:intergenic |
| GTTATCAATTGCTGAAATAA+CGG | 0.504761 | 7_1:-75168481 | Msa1038350:CDS |
| AGAGGAGCTAATAATAGATC+GGG | 0.505089 | 7_1:-75165716 | Msa1038350:CDS |
| ATGTCTGAGGTATCATCAAT+GGG | 0.509553 | 7_1:-75165863 | Msa1038350:CDS |
| TTATTTGGATCTTCTTGCAC+AGG | 0.510884 | 7_1:+75165788 | None:intergenic |
| CTATCCTAATTCCTATCTCC+AGG | 0.511568 | 7_1:+75165413 | None:intergenic |
| GCGCCGCCGTCGCTAAGTCG+AGG | 0.516197 | 7_1:-75168203 | Msa1038350:CDS |
| CGCCGCCGTCGCTAAGTCGA+GGG | 0.517985 | 7_1:-75168202 | Msa1038350:intron |
| GAGAGGAGCTAATAATAGAT+CGG | 0.524926 | 7_1:-75165717 | Msa1038350:CDS |
| GAATCGGAGTGATTCAGAAT+GGG | 0.529997 | 7_1:-75168406 | Msa1038350:CDS |
| CCAAGTTCAGAAGGATAAGA+TGG | 0.531261 | 7_1:+75167354 | None:intergenic |
| AGCTCCTCTCATATCATGAC+TGG | 0.535117 | 7_1:+75165730 | None:intergenic |
| CAATAATAGTATTGATTCTG+AGG | 0.537078 | 7_1:-75168265 | Msa1038350:CDS |
| TAGGAATTAGGATAGCCAAT+AGG | 0.537249 | 7_1:-75165405 | Msa1038350:three_prime_UTR |
| ACTTCGAAAGCGTGCAAGGA+AGG | 0.541198 | 7_1:-75168444 | Msa1038350:CDS |
| TGAATCGGAGTGATTCAGAA+TGG | 0.545437 | 7_1:-75168407 | Msa1038350:CDS |
| GCCAGAGGTCCAAGTTCAGA+AGG | 0.550767 | 7_1:+75167345 | None:intergenic |
| CATCTTCAGAGTCGAATTCG+TGG | 0.551475 | 7_1:-75165593 | Msa1038350:CDS |
| GTGCAGAAGAACACCACAGC+AGG | 0.553290 | 7_1:-75165668 | Msa1038350:CDS |
| CAGAAGAACACCACAGCAGG+TGG | 0.554335 | 7_1:-75165665 | Msa1038350:CDS |
| AGATATCAAAGTTGCTGTTG+GGG | 0.555327 | 7_1:-75167104 | Msa1038350:CDS |
| AACAAATTCCCTGCCACGGG+TGG | 0.555330 | 7_1:-75165627 | Msa1038350:CDS |
| AAGATTTACTGGATCGAACC+CGG | 0.558877 | 7_1:-75165897 | Msa1038350:CDS |
| CAAGCTAGCCACCCGTGGCA+GGG | 0.562427 | 7_1:+75165619 | None:intergenic |
| GTTGACTTCGAAAGCGTGCA+AGG | 0.565558 | 7_1:-75168448 | Msa1038350:CDS |
| TGTTGAAACATTAAGAGCTA+AGG | 0.568741 | 7_1:-75166300 | Msa1038350:intron |
| TCTAAGTTACACATCAGTCA+TGG | 0.569320 | 7_1:+75165273 | None:intergenic |
| CAGACATTGCATTAAACACC+GGG | 0.574406 | 7_1:+75165879 | None:intergenic |
| ACAATCAGGTCAACAACAAG+TGG | 0.576759 | 7_1:-75167052 | Msa1038350:CDS |
| ATCAGACGATGAGGAAGCTG+AGG | 0.576946 | 7_1:-75167026 | Msa1038350:CDS |
| TATCTTGTTCCCACCTGCTG+TGG | 0.581141 | 7_1:+75165655 | None:intergenic |
| TTTAACTGAGCTTGAAACAC+AGG | 0.587276 | 7_1:-75166540 | Msa1038350:intron |
| TAGATGGATCATTTCCAGAA+GGG | 0.588378 | 7_1:+75167140 | None:intergenic |
| ACGAACAAATTCCCTGCCAC+GGG | 0.590000 | 7_1:-75165630 | Msa1038350:CDS |
| TTAGATGGATCATTTCCAGA+AGG | 0.596302 | 7_1:+75167139 | None:intergenic |
| TCAGACATTGCATTAAACAC+CGG | 0.598502 | 7_1:+75165878 | None:intergenic |
| GTTGACCTGATTGTAACAGC+AGG | 0.601239 | 7_1:+75167061 | None:intergenic |
| AAATCTCAGGATCCTGACAA+TGG | 0.601386 | 7_1:-75167384 | Msa1038350:CDS |
| TATTCATATGTAGTAGAATG+CGG | 0.601644 | 7_1:-75167163 | Msa1038350:intron |
| GACGAACAAATTCCCTGCCA+CGG | 0.607260 | 7_1:-75165631 | Msa1038350:CDS |
| GCATCAGCTGATGACTCAGA+AGG | 0.620005 | 7_1:+75165818 | None:intergenic |
| CTGATGCAAAACGAGTAAGA+AGG | 0.628581 | 7_1:-75166973 | Msa1038350:intron |
| TCAGACGATGAGGAAGCTGA+GGG | 0.659901 | 7_1:-75167025 | Msa1038350:CDS |
| ATGTCCAGTCATGATATGAG+AGG | 0.664118 | 7_1:-75165734 | Msa1038350:CDS |
| GGTGTTTAATGCAATGTCTG+AGG | 0.664829 | 7_1:-75165876 | Msa1038350:CDS |
| TTTGAGATTGACATCAACTG+TGG | 0.668031 | 7_1:+75168290 | None:intergenic |
| AAGTGGATCATCAGACGATG+AGG | 0.668470 | 7_1:-75167035 | Msa1038350:CDS |
| TGTTCCAAGCTAGCCACCCG+TGG | 0.670248 | 7_1:+75165614 | None:intergenic |
| TACCCTCGACTTAGCGACGG+CGG | 0.681240 | 7_1:+75168200 | None:intergenic |
| AAACCTTTCAAAGTAGCCAG+AGG | 0.696494 | 7_1:+75167330 | None:intergenic |
| AGAAGAACACCACAGCAGGT+GGG | 0.698564 | 7_1:-75165664 | Msa1038350:CDS |
| ATATACCCTCGACTTAGCGA+CGG | 0.708838 | 7_1:+75168197 | None:intergenic |
| CTTCAGAGTCGAATTCGTGG+TGG | 0.718456 | 7_1:-75165590 | Msa1038350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATAAAATACTTAATTAA+GGG | + | chr7_1:75167153-75167172 | None:intergenic | 10.0% |
| !! | TTGTATAAAATACTTAATTA+AGG | + | chr7_1:75167154-75167173 | None:intergenic | 10.0% |
| !! | TAGTAAATTAAATTGTATCA+GGG | + | chr7_1:75165697-75165716 | None:intergenic | 15.0% |
| !! | ATAGTAAATTAAATTGTATC+AGG | + | chr7_1:75165698-75165717 | None:intergenic | 15.0% |
| !!! | TCTTTATTTTGTAATTTAGA+TGG | + | chr7_1:75166681-75166700 | None:intergenic | 15.0% |
| !!! | ATAAGTTATTTCTATAATCA+TGG | + | chr7_1:75167096-75167115 | None:intergenic | 15.0% |
| !! | AAAAATGAGAACAATATAAA+GGG | + | chr7_1:75167856-75167875 | None:intergenic | 15.0% |
| !! | TAAAAATGAGAACAATATAA+AGG | + | chr7_1:75167857-75167876 | None:intergenic | 15.0% |
| !!! | TTATATTGTTCTCATTTTTA+AGG | - | chr7_1:75167857-75167876 | Msa1038350:intron | 15.0% |
| !!! | TACTATATATTTTTTGTGTG+TGG | - | chr7_1:75165712-75165731 | Msa1038350:CDS | 20.0% |
| !!! | TATAGCTTTTGAGAATATTA+CGG | + | chr7_1:75165834-75165853 | None:intergenic | 20.0% |
| !! | TTAATTCTGTCAACATATAT+GGG | + | chr7_1:75166024-75166043 | None:intergenic | 20.0% |
| !! | TTTAATTCTGTCAACATATA+TGG | + | chr7_1:75166025-75166044 | None:intergenic | 20.0% |
| !!! | TGCTATTTATTTGAAAGTTT+AGG | - | chr7_1:75168315-75168334 | Msa1038350:CDS | 20.0% |
| !!! | CTAGTCTAATTTTTTTAACT+GGG | - | chr7_1:75168360-75168379 | Msa1038350:CDS | 20.0% |
| !! | CTTAGATTAATTAGATATGA+TGG | - | chr7_1:75168546-75168565 | Msa1038350:five_prime_UTR | 20.0% |
| ! | GTTATCAATTGCTGAAATAA+CGG | - | chr7_1:75165321-75165340 | Msa1038350:three_prime_UTR | 25.0% |
| !!! | CAATAATAGTATTGATTCTG+AGG | - | chr7_1:75165537-75165556 | Msa1038350:three_prime_UTR | 25.0% |
| ! | TTTGTGCATGTTTGATATTA+CGG | - | chr7_1:75165890-75165909 | Msa1038350:CDS | 25.0% |
| ! | ACAATTCTGTCAACATATAT+GGG | + | chr7_1:75165996-75166015 | None:intergenic | 25.0% |
| !!! | TAATTGGCTTGATAATTGTT+TGG | + | chr7_1:75166210-75166229 | None:intergenic | 25.0% |
| ! | AAACAATTATCAAGCCAATT+AGG | - | chr7_1:75166209-75166228 | Msa1038350:intron | 25.0% |
| !!! | TAGTTTTGATTCTTCAAAGT+TGG | - | chr7_1:75166299-75166318 | Msa1038350:intron | 25.0% |
| !! | ATGTTTTCTTTTACTACTCA+TGG | - | chr7_1:75166377-75166396 | Msa1038350:CDS | 25.0% |
| !!! | ACTTTGAAAGGTTTGATTTT+TGG | - | chr7_1:75166481-75166500 | Msa1038350:intron | 25.0% |
| ! | AAACATGGTAAATACATTGA+AGG | - | chr7_1:75166559-75166578 | Msa1038350:CDS | 25.0% |
| !! | GTAGTAGATCACAATTTTAA+GGG | - | chr7_1:75166586-75166605 | Msa1038350:CDS | 25.0% |
| ! | TATTCATATGTAGTAGAATG+CGG | - | chr7_1:75166639-75166658 | Msa1038350:intron | 25.0% |
| ! | AACACTTGTGAAATTATTTG+AGG | - | chr7_1:75166952-75166971 | Msa1038350:intron | 25.0% |
| ! | ACACTTGTGAAATTATTTGA+GGG | - | chr7_1:75166953-75166972 | Msa1038350:intron | 25.0% |
| ! | AACTATCATAGAGATTTGAA+GGG | + | chr7_1:75167024-75167043 | None:intergenic | 25.0% |
| ! | AAACTATCATAGAGATTTGA+AGG | + | chr7_1:75167025-75167044 | None:intergenic | 25.0% |
| ! | ATTTGAACGACTAATTAAGA+TGG | + | chr7_1:75167346-75167365 | None:intergenic | 25.0% |
| !! | AGCAGAATTGTTGAATTTTT+GGG | + | chr7_1:75167456-75167475 | None:intergenic | 25.0% |
| ! | TACTTTACTAGTAGTAAAAC+TGG | - | chr7_1:75167542-75167561 | Msa1038350:intron | 25.0% |
| ! | ACACATAAATCAATTGGAAA+TGG | + | chr7_1:75167803-75167822 | None:intergenic | 25.0% |
| !! | TCCAATTGATTTATGTGTAT+TGG | - | chr7_1:75167805-75167824 | Msa1038350:intron | 25.0% |
| ! | GGTTGAAAAAAGTGATTATT+TGG | + | chr7_1:75168032-75168051 | None:intergenic | 25.0% |
| ! | GACATTAGATTATTCGATAA+GGG | + | chr7_1:75168053-75168072 | None:intergenic | 25.0% |
| !!! | GCTAGTCTAATTTTTTTAAC+TGG | - | chr7_1:75168359-75168378 | Msa1038350:CDS | 25.0% |
| ! | TATATGCTGCTATTCTTTTC+TGG | + | chr7_1:75165257-75165276 | None:intergenic | 30.0% |
| GAGAAAGAAAGACAAGAAAA+TGG | - | chr7_1:75165291-75165310 | Msa1038350:three_prime_UTR | 30.0% | |
| GAGATACAACAAAGATGAAT+CGG | - | chr7_1:75165380-75165399 | Msa1038350:three_prime_UTR | 30.0% | |
| ! | GTTGTTCACGTAAAAACTTT+TGG | + | chr7_1:75165426-75165445 | None:intergenic | 30.0% |
| !! | TATTGATTCTGAGGATTATC+AGG | - | chr7_1:75165546-75165565 | Msa1038350:three_prime_UTR | 30.0% |
| ! | GTGTGCATATGTTAATCTTT+TGG | + | chr7_1:75165764-75165783 | None:intergenic | 30.0% |
| ! | CACAATTTTACGTGTATGTT+TGG | - | chr7_1:75165781-75165800 | Msa1038350:CDS | 30.0% |
| TACGTGTATGTTTGGATATT+CGG | - | chr7_1:75165789-75165808 | Msa1038350:CDS | 30.0% | |
| !! | ATTAATTTGCGAAATTGGGA+TGG | - | chr7_1:75165916-75165935 | Msa1038350:CDS | 30.0% |
| ATGTGACTTTGGTAAAATCA+CGG | + | chr7_1:75165946-75165965 | None:intergenic | 30.0% | |
| GTTTATTATCGATGTGACTT+TGG | + | chr7_1:75165957-75165976 | None:intergenic | 30.0% | |
| GACAATTCTGTCAACATATA+TGG | + | chr7_1:75165997-75166016 | None:intergenic | 30.0% | |
| AAGCTTAAATGAAAACCTAG+TGG | + | chr7_1:75166167-75166186 | None:intergenic | 30.0% | |
| AATTAACAAGCACTCCTAAT+TGG | + | chr7_1:75166226-75166245 | None:intergenic | 30.0% | |
| ! | TTTTACTACTCATGGCAATA+GGG | - | chr7_1:75166385-75166404 | Msa1038350:CDS | 30.0% |
| TGGTAAATACATTGAAGGAA+AGG | - | chr7_1:75166564-75166583 | Msa1038350:CDS | 30.0% | |
| ! | GGTAGTAGATCACAATTTTA+AGG | - | chr7_1:75166585-75166604 | Msa1038350:CDS | 30.0% |
| AAAGATATCAAAGTTGCTGT+TGG | - | chr7_1:75166696-75166715 | Msa1038350:intron | 30.0% | |
| ! | AAGATATCAAAGTTGCTGTT+GGG | - | chr7_1:75166697-75166716 | Msa1038350:intron | 30.0% |
| TCAAATAAGTCAATCTAAGC+AGG | + | chr7_1:75166915-75166934 | None:intergenic | 30.0% | |
| TATTAGGTCTCTGAATTAAG+AGG | - | chr7_1:75167392-75167411 | Msa1038350:CDS | 30.0% | |
| ! | CAGCAGAATTGTTGAATTTT+TGG | + | chr7_1:75167457-75167476 | None:intergenic | 30.0% |
| TGTTGAAACATTAAGAGCTA+AGG | - | chr7_1:75167502-75167521 | Msa1038350:intron | 30.0% | |
| CTAGTAAAGTAGTTAAAGCA+AGG | + | chr7_1:75167533-75167552 | None:intergenic | 30.0% | |
| !! | TTTGGATTTTCAAGAAGAGT+CGG | - | chr7_1:75167685-75167704 | Msa1038350:intron | 30.0% |
| GCCAATACACATAAATCAAT+TGG | + | chr7_1:75167809-75167828 | None:intergenic | 30.0% | |
| !!! | TCTCATTTTTAAGGTGAAGA+TGG | - | chr7_1:75167866-75167885 | Msa1038350:intron | 30.0% |
| GAGACAGTTAAAAGATTTAC+TGG | - | chr7_1:75167894-75167913 | Msa1038350:intron | 30.0% | |
| ATGGGAATGTCATTATTTGA+TGG | - | chr7_1:75167957-75167976 | Msa1038350:intron | 30.0% | |
| GGACATTAGATTATTCGATA+AGG | + | chr7_1:75168054-75168073 | None:intergenic | 30.0% | |
| ATTCTATCACTTGTCTTCTT+CGG | + | chr7_1:75168240-75168259 | None:intergenic | 30.0% | |
| !! | TTTTTAACTGGGAAAATTCC+TGG | - | chr7_1:75168371-75168390 | Msa1038350:CDS | 30.0% |
| !!! | TTGTTTCTTTTAAGGCCTAT+TGG | + | chr7_1:75168415-75168434 | None:intergenic | 30.0% |
| !! | GGGAGAATTTGTTTCTTTTA+AGG | + | chr7_1:75168423-75168442 | None:intergenic | 30.0% |
| ! | CTGAAATAACGGAGCAATAT+TGG | - | chr7_1:75165332-75165351 | Msa1038350:three_prime_UTR | 35.0% |
| GTTGAAGTTGAAGATGAAGA+AGG | + | chr7_1:75165484-75165503 | None:intergenic | 35.0% | |
| ! | TTTGAGATTGACATCAACTG+TGG | + | chr7_1:75165515-75165534 | None:intergenic | 35.0% |
| TGGATATTCGGTCAAAATCA+CGG | - | chr7_1:75165801-75165820 | Msa1038350:CDS | 35.0% | |
| !! | GCGGATTAATTTGCGAAATT+GGG | - | chr7_1:75165912-75165931 | Msa1038350:CDS | 35.0% |
| GAATGCATGAATCATGCAAT+TGG | + | chr7_1:75166145-75166164 | None:intergenic | 35.0% | |
| ! | CTTTTACTACTCATGGCAAT+AGG | - | chr7_1:75166384-75166403 | Msa1038350:CDS | 35.0% |
| CATGTCTGCATATGTGAAAA+CGG | - | chr7_1:75166533-75166552 | Msa1038350:intron | 35.0% | |
| ATGTGAAAACGGTGAAAACA+TGG | - | chr7_1:75166544-75166563 | Msa1038350:CDS | 35.0% | |
| TAGATGGATCATTTCCAGAA+GGG | + | chr7_1:75166665-75166684 | None:intergenic | 35.0% | |
| TTAGATGGATCATTTCCAGA+AGG | + | chr7_1:75166666-75166685 | None:intergenic | 35.0% | |
| ! | AGATATCAAAGTTGCTGTTG+GGG | - | chr7_1:75166698-75166717 | Msa1038350:intron | 35.0% |
| ATTGTAACAGCAGGTTTCTT+TGG | + | chr7_1:75166735-75166754 | None:intergenic | 35.0% | |
| GAGGGAGAGATTAATATGAA+TGG | - | chr7_1:75166795-75166814 | Msa1038350:intron | 35.0% | |
| ! | TTACTCGTTTTGCATCAGTA+GGG | + | chr7_1:75166827-75166846 | None:intergenic | 35.0% |
| ! | GTAATGAATGTGTTTTGCAC+AGG | - | chr7_1:75166851-75166870 | Msa1038350:intron | 35.0% |
| AAATTATTTGAGGGAGATCG+TGG | - | chr7_1:75166962-75166981 | Msa1038350:intron | 35.0% | |
| TTTCAGGATGCTCTCTAATA+GGG | - | chr7_1:75167202-75167221 | Msa1038350:intron | 35.0% | |
| TTTAACTGAGCTTGAAACAC+AGG | - | chr7_1:75167262-75167281 | Msa1038350:intron | 35.0% | |
| AGAAGAGAATGCAGAAGAAA+TGG | + | chr7_1:75167310-75167329 | None:intergenic | 35.0% | |
| AGAATCTTGATCCAAGTAGT+AGG | + | chr7_1:75167577-75167596 | None:intergenic | 35.0% | |
| GTGACTACTTAGATTAGGAT+CGG | - | chr7_1:75167638-75167657 | Msa1038350:intron | 35.0% | |
| TCAGACATTGCATTAAACAC+CGG | + | chr7_1:75167927-75167946 | None:intergenic | 35.0% | |
| ! | AATGTCTGAGGTATCATCAA+TGG | - | chr7_1:75167938-75167957 | Msa1038350:intron | 35.0% |
| ! | ATGTCTGAGGTATCATCAAT+GGG | - | chr7_1:75167939-75167958 | Msa1038350:intron | 35.0% |
| TTATTTGGATCTTCTTGCAC+AGG | + | chr7_1:75168017-75168036 | None:intergenic | 35.0% | |
| GAGAGGAGCTAATAATAGAT+CGG | - | chr7_1:75168085-75168104 | Msa1038350:intron | 35.0% | |
| AGAGGAGCTAATAATAGATC+GGG | - | chr7_1:75168086-75168105 | Msa1038350:intron | 35.0% | |
| GCTCAAAAGTCAACAAGAAT+AGG | + | chr7_1:75168341-75168360 | None:intergenic | 35.0% | |
| AATTCCTGGAGATAGGAATT+AGG | - | chr7_1:75168385-75168404 | Msa1038350:CDS | 35.0% | |
| TAGGAATTAGGATAGCCAAT+AGG | - | chr7_1:75168397-75168416 | Msa1038350:CDS | 35.0% | |
| TATGTTCCAAACATGCTTCT+GGG | + | chr7_1:75168443-75168462 | None:intergenic | 35.0% | |
| ATATGTTCCAAACATGCTTC+TGG | + | chr7_1:75168444-75168463 | None:intergenic | 35.0% | |
| TCTAAGTTACACATCAGTCA+TGG | + | chr7_1:75168532-75168551 | None:intergenic | 35.0% | |
| TGAATCGGAGTGATTCAGAA+TGG | - | chr7_1:75165395-75165414 | Msa1038350:three_prime_UTR | 40.0% | |
| GAATCGGAGTGATTCAGAAT+GGG | - | chr7_1:75165396-75165415 | Msa1038350:three_prime_UTR | 40.0% | |
| ATATTCGGTCAAAATCACGG+TGG | - | chr7_1:75165804-75165823 | Msa1038350:CDS | 40.0% | |
| GTGCATGTTTGATATTACGG+CGG | - | chr7_1:75165893-75165912 | Msa1038350:CDS | 40.0% | |
| !! | GGCGGATTAATTTGCGAAAT+TGG | - | chr7_1:75165911-75165930 | Msa1038350:CDS | 40.0% |
| !! | ACTTGTTCTAAGGTAGGAGA+AGG | + | chr7_1:75166061-75166080 | None:intergenic | 40.0% |
| !! | ACTAGCACTTGTTCTAAGGT+AGG | + | chr7_1:75166067-75166086 | None:intergenic | 40.0% |
| AGACACTAGCACTTGTTCTA+AGG | + | chr7_1:75166071-75166090 | None:intergenic | 40.0% | |
| CATGATTCATGCATTCCACT+AGG | - | chr7_1:75166149-75166168 | Msa1038350:intron | 40.0% | |
| AAATCTCAGGATCCTGACAA+TGG | - | chr7_1:75166418-75166437 | Msa1038350:intron | 40.0% | |
| CCAAGTTCAGAAGGATAAGA+TGG | + | chr7_1:75166451-75166470 | None:intergenic | 40.0% | |
| CCATCTTATCCTTCTGAACT+TGG | - | chr7_1:75166448-75166467 | Msa1038350:intron | 40.0% | |
| AAACCTTTCAAAGTAGCCAG+AGG | + | chr7_1:75166475-75166494 | None:intergenic | 40.0% | |
| AGAAACCTGCTGTTACAATC+AGG | - | chr7_1:75166736-75166755 | Msa1038350:intron | 40.0% | |
| ACAATCAGGTCAACAACAAG+TGG | - | chr7_1:75166750-75166769 | Msa1038350:intron | 40.0% | |
| ! | CTTACTCGTTTTGCATCAGT+AGG | + | chr7_1:75166828-75166847 | None:intergenic | 40.0% |
| CTGATGCAAAACGAGTAAGA+AGG | - | chr7_1:75166829-75166848 | Msa1038350:intron | 40.0% | |
| ! | GTTTTGCACAGGAAATCTTC+TGG | - | chr7_1:75166862-75166881 | Msa1038350:intron | 40.0% |
| AGGCAATGTCATTAGGCATT+AGG | + | chr7_1:75167183-75167202 | None:intergenic | 40.0% | |
| TCCTGAAAGGCAATGTCATT+AGG | + | chr7_1:75167190-75167209 | None:intergenic | 40.0% | |
| !! | CTATTAGAGAGCATCCTGAA+AGG | + | chr7_1:75167203-75167222 | None:intergenic | 40.0% |
| CTTTCAGGATGCTCTCTAAT+AGG | - | chr7_1:75167201-75167220 | Msa1038350:intron | 40.0% | |
| GGTTATAGAAGCCTACTACT+TGG | - | chr7_1:75167563-75167582 | Msa1038350:intron | 40.0% | |
| AGTTTACGCAATCAGCACAT+CGG | - | chr7_1:75167616-75167635 | Msa1038350:intron | 40.0% | |
| CATCGGTGACTACTTAGATT+AGG | - | chr7_1:75167633-75167652 | Msa1038350:intron | 40.0% | |
| GGTTACTACTGGATTCAGAT+CGG | + | chr7_1:75167734-75167753 | None:intergenic | 40.0% | |
| ATCAGTGCAATGGTTACTAC+TGG | + | chr7_1:75167745-75167764 | None:intergenic | 40.0% | |
| GAATCCAGCAATATTCCAAC+TGG | - | chr7_1:75167770-75167789 | Msa1038350:intron | 40.0% | |
| AAGATTTACTGGATCGAACC+CGG | - | chr7_1:75167905-75167924 | Msa1038350:intron | 40.0% | |
| CAGACATTGCATTAAACACC+GGG | + | chr7_1:75167926-75167945 | None:intergenic | 40.0% | |
| GGTGTTTAATGCAATGTCTG+AGG | - | chr7_1:75167926-75167945 | Msa1038350:intron | 40.0% | |
| ATGTCCAGTCATGATATGAG+AGG | - | chr7_1:75168068-75168087 | Msa1038350:intron | 40.0% | |
| CTATCCTAATTCCTATCTCC+AGG | + | chr7_1:75168392-75168411 | None:intergenic | 40.0% | |
| ! | AATTCTCCCAGAAGCATGTT+TGG | - | chr7_1:75168434-75168453 | Msa1038350:CDS | 40.0% |
| ATATACCCTCGACTTAGCGA+CGG | + | chr7_1:75165608-75165627 | None:intergenic | 45.0% | |
| TGTGTGGCAATCTGCTTTCA+TGG | - | chr7_1:75165728-75165747 | Msa1038350:CDS | 45.0% | |
| GTGTGGCAATCTGCTTTCAT+GGG | - | chr7_1:75165729-75165748 | Msa1038350:CDS | 45.0% | |
| CTCATGGCAATAGGGATCTT+TGG | - | chr7_1:75166393-75166412 | Msa1038350:CDS | 45.0% | |
| GGGATCTTTGGTCAAATCTC+AGG | - | chr7_1:75166405-75166424 | Msa1038350:CDS | 45.0% | |
| GATGGTTGTGATCCATTGTC+AGG | + | chr7_1:75166433-75166452 | None:intergenic | 45.0% | |
| GTTGACCTGATTGTAACAGC+AGG | + | chr7_1:75166744-75166763 | None:intergenic | 45.0% | |
| AAGTGGATCATCAGACGATG+AGG | - | chr7_1:75166767-75166786 | Msa1038350:intron | 45.0% | |
| GCCTAATGACATTGCCTTTC+AGG | - | chr7_1:75167186-75167205 | Msa1038350:intron | 45.0% | |
| !! | GTGCTGATTGCGTAAACTCA+AGG | + | chr7_1:75167614-75167633 | None:intergenic | 45.0% |
| GGATGCTTGAGATTCAACCT+CGG | - | chr7_1:75167659-75167678 | Msa1038350:intron | 45.0% | |
| !! | CTTGAAAATCCAAAGCACCG+AGG | + | chr7_1:75167679-75167698 | None:intergenic | 45.0% |
| GATTCACGCAATCAGTGCAA+TGG | + | chr7_1:75167755-75167774 | None:intergenic | 45.0% | |
| CCTTCCAGTTGGAATATTGC+TGG | + | chr7_1:75167777-75167796 | None:intergenic | 45.0% | |
| CCAGCAATATTCCAACTGGA+AGG | - | chr7_1:75167774-75167793 | Msa1038350:intron | 45.0% | |
| ! | GGAAATGGATTCCTTCCAGT+TGG | + | chr7_1:75167788-75167807 | None:intergenic | 45.0% |
| AGCTCCTCTCATATCATGAC+TGG | + | chr7_1:75168075-75168094 | None:intergenic | 45.0% | |
| CATCTTCAGAGTCGAATTCG+TGG | - | chr7_1:75168209-75168228 | Msa1038350:CDS | 45.0% | |
| CTGGGAAAATTCCTGGAGAT+AGG | - | chr7_1:75168378-75168397 | Msa1038350:CDS | 45.0% | |
| !!! | ATATAATATTCTATTTTATT+AGG | - | chr7_1:75167376-75167395 | Msa1038350:CDS | 5.0% |
| ! | GTTGACTTCGAAAGCGTGCA+AGG | - | chr7_1:75165354-75165373 | Msa1038350:three_prime_UTR | 50.0% |
| ! | ACTTCGAAAGCGTGCAAGGA+AGG | - | chr7_1:75165358-75165377 | Msa1038350:three_prime_UTR | 50.0% |
| TCCTTCTGAACTTGGACCTC+TGG | - | chr7_1:75166456-75166475 | Msa1038350:intron | 50.0% | |
| ! | GGACCTCTGGCTACTTTGAA+AGG | - | chr7_1:75166469-75166488 | Msa1038350:intron | 50.0% |
| GCAGGTTTCTTTGGCATGCA+AGG | + | chr7_1:75166726-75166745 | None:intergenic | 50.0% | |
| ATCAGACGATGAGGAAGCTG+AGG | - | chr7_1:75166776-75166795 | Msa1038350:intron | 50.0% | |
| TCAGACGATGAGGAAGCTGA+GGG | - | chr7_1:75166777-75166796 | Msa1038350:intron | 50.0% | |
| !! | GAGATTCAACCTCGGTGCTT+TGG | - | chr7_1:75167667-75167686 | Msa1038350:intron | 50.0% |
| GCATCAGCTGATGACTCAGA+AGG | + | chr7_1:75167987-75168006 | None:intergenic | 50.0% | |
| AGAAGAACACCACAGCAGGT+GGG | - | chr7_1:75168138-75168157 | Msa1038350:intron | 50.0% | |
| TATCTTGTTCCCACCTGCTG+TGG | + | chr7_1:75168150-75168169 | None:intergenic | 50.0% | |
| ACAGCAGGTGGGAACAAGAT+AGG | - | chr7_1:75168149-75168168 | Msa1038350:intron | 50.0% | |
| GACGAACAAATTCCCTGCCA+CGG | - | chr7_1:75168171-75168190 | Msa1038350:intron | 50.0% | |
| ACGAACAAATTCCCTGCCAC+GGG | - | chr7_1:75168172-75168191 | Msa1038350:intron | 50.0% | |
| CTTCAGAGTCGAATTCGTGG+TGG | - | chr7_1:75168212-75168231 | Msa1038350:CDS | 50.0% | |
| GGCGCAAGCAAGATCAAGCT+TGG | + | chr7_1:75165584-75165603 | None:intergenic | 55.0% | |
| GCCAGAGGTCCAAGTTCAGA+AGG | + | chr7_1:75166460-75166479 | None:intergenic | 55.0% | |
| GTAGTAGAATGCGGCCCTTC+TGG | - | chr7_1:75166648-75166667 | Msa1038350:intron | 55.0% | |
| GTGCAGAAGAACACCACAGC+AGG | - | chr7_1:75168134-75168153 | Msa1038350:intron | 55.0% | |
| CAGAAGAACACCACAGCAGG+TGG | - | chr7_1:75168137-75168156 | Msa1038350:intron | 55.0% | |
| AACAAATTCCCTGCCACGGG+TGG | - | chr7_1:75168175-75168194 | Msa1038350:intron | 55.0% | |
| TACCCTCGACTTAGCGACGG+CGG | + | chr7_1:75165605-75165624 | None:intergenic | 60.0% | |
| TGTTCCAAGCTAGCCACCCG+TGG | + | chr7_1:75168191-75168210 | None:intergenic | 60.0% | |
| CAAGCTAGCCACCCGTGGCA+GGG | + | chr7_1:75168186-75168205 | None:intergenic | 65.0% | |
| CGCCGCCGTCGCTAAGTCGA+GGG | - | chr7_1:75165600-75165619 | Msa1038350:CDS | 70.0% | |
| CCAAGCTAGCCACCCGTGGC+AGG | + | chr7_1:75168187-75168206 | None:intergenic | 70.0% | |
| ! | CCTGCCACGGGTGGCTAGCT+TGG | - | chr7_1:75168184-75168203 | Msa1038350:intron | 70.0% |
| GCGCCGCCGTCGCTAAGTCG+AGG | - | chr7_1:75165599-75165618 | Msa1038350:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 75165254 | 75168570 | 75165254 | ID=Msa1038350;Name=Msa1038350 |
| chr7_1 | mRNA | 75165254 | 75168570 | 75165254 | ID=Msa1038350-mRNA-1;Parent=Msa1038350;Name=Msa1038350-mRNA-1;_AED=0.08;_eAED=0.08;_QI=56|0.8|0.83|1|1|1|6|317|390 |
| chr7_1 | exon | 75165254 | 75165945 | 75165254 | ID=Msa1038350-mRNA-1:exon:19132;Parent=Msa1038350-mRNA-1 |
| chr7_1 | exon | 75166301 | 75166426 | 75166301 | ID=Msa1038350-mRNA-1:exon:19131;Parent=Msa1038350-mRNA-1 |
| chr7_1 | exon | 75166541 | 75166616 | 75166541 | ID=Msa1038350-mRNA-1:exon:19130;Parent=Msa1038350-mRNA-1 |
| chr7_1 | exon | 75166974 | 75167172 | 75166974 | ID=Msa1038350-mRNA-1:exon:19129;Parent=Msa1038350-mRNA-1 |
| chr7_1 | exon | 75167334 | 75167418 | 75167334 | ID=Msa1038350-mRNA-1:exon:19128;Parent=Msa1038350-mRNA-1 |
| chr7_1 | exon | 75168203 | 75168570 | 75168203 | ID=Msa1038350-mRNA-1:exon:19127;Parent=Msa1038350-mRNA-1 |
| chr7_1 | five_prime_UTR | 75168515 | 75168570 | 75168515 | ID=Msa1038350-mRNA-1:five_prime_utr;Parent=Msa1038350-mRNA-1 |
| chr7_1 | CDS | 75168203 | 75168514 | 75168203 | ID=Msa1038350-mRNA-1:cds;Parent=Msa1038350-mRNA-1 |
| chr7_1 | CDS | 75167334 | 75167418 | 75167334 | ID=Msa1038350-mRNA-1:cds;Parent=Msa1038350-mRNA-1 |
| chr7_1 | CDS | 75166974 | 75167172 | 75166974 | ID=Msa1038350-mRNA-1:cds;Parent=Msa1038350-mRNA-1 |
| chr7_1 | CDS | 75166541 | 75166616 | 75166541 | ID=Msa1038350-mRNA-1:cds;Parent=Msa1038350-mRNA-1 |
| chr7_1 | CDS | 75166301 | 75166426 | 75166301 | ID=Msa1038350-mRNA-1:cds;Parent=Msa1038350-mRNA-1 |
| chr7_1 | CDS | 75165571 | 75165945 | 75165571 | ID=Msa1038350-mRNA-1:cds;Parent=Msa1038350-mRNA-1 |
| chr7_1 | three_prime_UTR | 75165254 | 75165570 | 75165254 | ID=Msa1038350-mRNA-1:three_prime_utr;Parent=Msa1038350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
